lowQualScore : 111111 111111 1111 111111 111 1111
lowQualScore : 3 555555 5 44 3 7 1 2 444 1 2 444 2 6 7 0 6666 3 222222 2 0 0 1 8 2 333 33 0000 2 2 2 4 222222 333 0 5 2 2 9999 22 5 2 33 666 1 4 2 2 33 1 000 9999 22 4 2 8 11 444 6 0 66 3 3 1 4 7
lowQualScore : . ...... . .. . . . . ... . . ... . . . . .... . ...... . . . . . . ... .. .... . . . . ...... ... . . . . .... .. . . .. ... . . . . .. . ... .... .. . . . .. ... . . .. . . . . .
lowQualScore : 3 999999 9 55 5 4 9 4 111 6 1 222 1 2 1 7 1111 9 888888 1 5 9 1 2 8 999 11 3333 2 2 2 7 222222 999 3 3 2 2 1111 77 6 0 11 333 2 4 4 8 11 2 888 6666 66 4 5 6 88 444 0 8 77 3 3 0 7 2
consensus : CCAACCCATNTCGCCNGA-A-ATNGC-TGCAGTNGGCGTA-TATT---TGCCAGCTCCCAGAA-A--GAATCG-CATNGCTCTATTTTG---TATNGC-----GT-CTATACACGAAAANG---A--TTTAA-NGCCCCATATTGCA-GCNCCGTACGAT--ATA---ACAGGCCANA-CA-A--NTGAA-TCAAACAA--CTTTGTA--NATACNTTATAGGGCATNC--CACC---TAANC-NTTTATATTTNGCAA-TNAATAG---ACCNAGGGCACGACCGGC-GCTT-TGAGCCACTATTTTTGCTGT
Reference ( gi|45929 ) : CCAACCCATATCGCCTGA-A-ATGGT-TGCAGTAGGTGTA-TATT---TGCCAGTTCCCAGAA-A--AAATCG-CATCGCCCTATTTTG---TATTGA-----AT-TTATGCACGAATAAG---A--TTTAA-AGCCCCATATTGTA-GCTCCATACGAT--ATA---ACAGACCAAA-CA-A--GTGAA-TTAAACAA--CTTTGTA--AATACTTTATGGGGCATTC--CACC---TAAGC-TTTTATACCTGGCAA-TAAGTAA---ACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGT
gi|45930 : CCAACCCATATCGCCTGA-A-ATGGC-TGCAGTAGGTGTA-TATT---TGCCAGTTCCCAGAA-A--AAATCG-CATCGCCCTATTTTG---TATTGA-----AT-TTATGCACGAATAAG---A--TTTAA-CGCCCCATATTGTA-GCTCCATACGAT--ATA---ACAGACCAAA-CA-A--GTGAA-TTAAACAA--CTTTGTA--AATACTTTATGGGGCATTC--CACC---TAAGC-TTTTATACCTGGCAA-TAAGTAA---ACATAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGT
gi|45932 : CCAACCCATGTCGCCTGA-A-ATGGC-TGCAGTAGGTGTA-TATT---TGCCAGTTCCTAGAA-A--AAATCG-CATCGCTCTATTTTG---TATTGA-----AT-TTATGCACGAATAGG---A--TTTAA-CGCCCCATACTGTA-GCTCCATACGAT--ATA---ACAGACCAAA-CA-A--GCGAA-TCAATCAA--CTGTGTA--AATACTTTATGGGGCGTTC--CACC---TAAGC-TTTTATACCTGGCAA-TAAGTAA---ACCTAGAGCACGACCAGC-GCTT-TGAGTCACTATTTTTGCTGT
gi|45931 : CCAACCCATGTCGCCTGA-A-ATGGC-TGCAGTAGGTGTA-TATT---TGCCAGTTCCTAGAA-A--AAATCG-CATCGCTCTATTTTG---TATTGA-----AT-TTATGCACGAATAGG---A--TTTAA-CGCCCCATACTGTA-GCTCCATACGAT--ATA---ACAGACCAAA-CA-A--GCGAA-TCAATCAA--CTGTGTA--AATACTTTATGGGGCGTTC--CACC---TAAGC-TTTTATACCTGGCAA-TAAGTAA---ACCTAGAGCACGACCAGC-GCTT-TGAGTCACTATTTTTGCTGT
gi|45934 : CCAACCCATATCGCCTGA-A-ATGGC-TGCGGTAGGTGTA-TATT---TGCCAGTTCCCAGAA-ATAAAATCT-CATCGCTTTATTTTG---TATTTA-----AT-TAATGCACGAATAAG---A--TTTAA-AGCCCCCTATTGTA-GCTCCATACGAT--ATA---AC------------------AA-TCAAACAA--CTTTGTA--AATACCTAACGGGGCATTC--CACC---TAAGC-GTTTATACCTGGTAA-TAAGTAA---ACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGC
gi|45935 : CCAGCCCATATCAGCT--------GT-TGGA------GTA-TATT---TGCCATCTCCAAGAT-A--AAAACG-CATTGCTCCATTTTG---AATTG-------TGTTGTACATGAATATG---A--TTTAA-AGCCCCAAATGGCA-GCACTGTACGAA--ATA---ACTGGCTAGA-CA-C--AAGAA-TAAAAAAG--TTATGAA--AAAACGTCATAAGGCATAC--CGCC---CATAC-TTTTATATTTTGCAA-TCAGTAA---ACCCAATGCACGACTGGC-ACTT-TGAGCAAC-ATTTTT
gi|45933 : aaggcatCCAGCCCATATCACCAGC-C-ACAGT-AGATGTTGGGGTA-TATT---TGCCAACTCCAAGAT-A--AAAACG-CATTGCTCTATTTTA---AATCGT-----GT-TGATACATGAATATG---A--TTTAA-AGCTCCA-ATGGCA-GCACCGTACGAA--ATA---ACTGACCAGA-CA-C--AACAA-TCAAA-AAGTTTTTTTA--AAAACATCATAAGGCATAC--CGCC---CATAC-TTTTATAagtcataa
gi|45919 : CCAAGCCATTTCACCAAC-A-ATAGC-TGAATTTTGCGTA-TATT---TGCCAACCCCCAAAA-A--GAATCG-CATAGCACGATTATG---AACAGC-----AT-CAATACATGAAAATG---A--TTTAC-AACCCCATATTGAA-GCCCCATA--ATTAATT---ACAGGCCATA-CA-A--TGGAG-TCATAAAG--CTTTGTA--TATACATTATAAGGAACTC--CTCCAATTA----TTTTGCATTTAGCAATTAAAT-G---ACCAAGGGCACGACTTCC-ACTC-TGCGCGACAGCTTTAGCTGTatttacaacatttttag
gi|45928 : gacgaacaatagtaggttgCCATCCCATATCACCAGA-C-ATTGC-GGCTGTTGGTGAG-AATT---TACAGACTCCTA-AA-A--GAACCAACAT-GCTCTATTTTGAGCCATT--------T-TTATACACGAAAATGTCCA--TTT-----CCCCATATGGCA-GCCCCATACGAA--ATA---ATATACTATA-CC-A--GTGAG-TCATACAA--CTTTGTA--TATACATTATATAGCATAC--CACCAAGTAA----TTTATATTTTGCTA-TTAACAC---TCCAAGTGCTCTACCGTCAGATTGTGAGACA--ACGTTTGCAGTaa
gi|45918 : gttgCCAAGTCATTTCACC-GA-CTACTGC-TGCATTTGGCGTA-TAAT---TGCCAACCCCAAGAA-A--GAATCG-CATAGCAC-----GG---TAATGACCAGCAT-CAATACATGGAAATG---A--TTTAC-AACCCCATATTGCA-GCCCCATA-GTTA-ATT---ACAGGCCATA-CA-A---TGAAGTCATAAAG--TTTTGTA--TATACGTTATATGGGACTC--CTCC----AATCAATTTACAATTAGTAA-TTAAAAG---ACCAAGGGCACGACTTCC-TCTC-TGCGCGACAGCTTTAGCTGTaa
gi|45926 : gacgaacaatagtaggttgCCAACCTATTTCACCAGC-A-GTCGC-TGCATTTGGAGCG-TATT---TTCCTACCCCCAAAA-A--GAATAG-CATAGCTCGATTTTG---GATGGC-----GT-CTACACAAGAAAAAG---ACATTTCA---CCCCATATTGCA-GCACCATATGCA--ACG---GCTGGCCAAACCATA--CTG---TCATATAA--TTTTGTG--AAAACATTATACGGCATAC--CACC---TAGAG-ATTCATATTTTGCTA-TTAAAAG---ACCGAGAGCaa
gi|45920 : ggttggcacCCAAGCCATTTCACC-GACA-ATTGC-TGAATTTGGCGTG-TATT---TGCTAACTCTCAGCATA--GCATAG-TA-CGCT-TATTA------ATAGC-----GT-CAATACATGAAAATG---A--TTTAC-ACCCCCAAATTGCA-GTCCCATA---T--TTATTTACAGACCATA-CA-ATGGTGAC-ATAA--GG--TTTTG-----------TATGGGAC-TCCTTCAAT---TAA----TTTGCATTAAGCAA-TTAAAAG---ACCAAGGGTACGACTTTC-ACTC-TGCGCTACAGCTTTAGCTGT
gi|45927 : gacgaacaatagtaggttgCAACCTATTTCACAAGC-A-GTTGTCTGCATTTGGAGTG-TACT-----CTAACCCCCAAAA-T--GAATCG-CATAGCTCGATTTTG---GATGGC-----GT-CTACACAAGAAaa
gi|45925 : ggttgacactCCATATCGCC----A-GCCAT-TGCAGCCGACGGAGCATTACGTGTC-GTACCAAGAA-A--CGCTCT-CATAGCTCTGTGTTG---TATAGC-----AT-CTATACATGAGAAAG---A--TCGAG-TTCCCCA-AATGTCTGCACTGTAAGCT--ACA---ACGGACCATA-CC-A--TTGAG-TAAAACAA--TTTTGTA--TACACATTATACCGCATAC--CTTC---TCATG-TTTTAAATTTTGCAA-TTAACAG---ACCaa
gi|45936 : aggtttccatgAGGTGTA-TATT---TGCCAGTTCCCAAAA-A--AAATAG-CATCGCTCTATTTTG---TATTGA-----AT-TTATGCACGAATAAG---A--TTTAA-CGCCCCATATTGTA-GCTCCATACGAT--ATA---GCTGGCCAAA-CA-A--GTGAA-TCAAACAA--CTTTGTA--AATACTTTATGGGGCATTC--CACT---TAAGC-TTTTATACCTGACAA-TAAGTAA---ACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGT
gi|45917 : ctgaatatattccGGTGTA-TATT---TGCCAGCCCCAAGAA-A--GAATCG-CATAGCACGGTTATG---AACAGC-----AT-CAATACATGAAAATG---A--TTTAC-AACCCCATATTGAA-GCCCCATA--ATTAATT---ACAGGCCATA-CA-A--TGGAG-TCATAAAG--TTTTGTA--TATACGTTATATGGGACTC--C-TC---TAATCAATTTACATTTAGCAA-T---TAAATTACCAATGGCACAACTTCC-ACTC-TGCGC
gi|45923 : gacgaacaatagtaggttgcctagccatttcaccgactactgctgaatttGGCGTA-TATT---TGCCAACCCCAAGAA-A--GAATCG-TATAGCACGGTTATG---AACAGC-----AT-CAATAGATGAA-AAT---A--ATTAACAACCCAATATTGCA-GCCTCATA--ATTAATT---ACAGGCCAAA-CA-A--TTGAG-TCATAAAA--GTTTGTATCAACGTTATATGGGAC--TC--CTCCAA-TAAA---TTTACATTTAGCAA-TTAAAAG---ACCAAGGGCACGA--------TT-T---CCACTATgatagctttagctgt
gi|45937 : caatagtaggttgccaagccatttcatcgacaactgctgatttt-TATT---TGCCAGTTCCCAGAA-A--AA-TAG-CATCGCTCTATTTTG---TATTGA-----AT-TTAAGCACGAAAAAG---A--TTTAA-CGCCCCATATTGCA-GCTCCATACCAT--ATA---ATAGCCCAAA-CA-A--GCGAA-TCAAACAA--CTTTATA--GATATTGTAAAGGGCATCC--CACC---gcacgatagcttttaatgtaa
gi|45939 : AGAA-A--TGCTCT-CATAGCTCTACTCTG---TATAGC-----GT-CTTTACATGAGAAAG---A--TTGTG-TTCTCCAAATAGCT-GCACCGTATGCT--ACA---ATAGACCACA-CT-A--TTGAC-TCAAACAG--TTTTGTA--TAAACTTTATATGGCATAC--CACC---CAATT-ATTTATATTTTGCAA-TTAACAG---ACCaa
gi|45938 : AGAA-A--TGCTCT-CATAGCTCTACTCTG---TATAGC-----GT-CTTTACATGAGAAAG---A--TTGTG-TTCTCCAAATAGCT-GCACCGTATGCT--ACA---ATAGACCACA-CT-A--TTGAC-TCAAACAG--TTTTGTA--TAAACTTTATATGGCATAC--CACC---CAATT-ATTTATATTTTGCAA-TTAACAG---ACC
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|45924 ): TAGTGATTGCTCCCAGCCTGTGTCACCGAGCACTCCGGCATTTGGCGTATATCGCCCTACCCCGAGAAAGAATCTGGCTGCACGTAGCTGCACAGTTTTTATACAAGCATGTTGCTTACTTCCCCATATGGCAGCCCCGTAGTTGATTGTGCTCCACACCATGGTATCGTATAGTTTCGTGTATGTTCCAAATGGTAAGCCCCCAAACGATTTAAACTTAGAAATGACAAGACTTAGTGC
Unaligned ( gi|45922 ): GAACAATGATAGGTTACCAGCCATTTCAGCGACAATTTGGCGACTAATCCCTTAAAATATCATATAGCACGATAACGAACAGCGCCAATACATAAAAACTCCGTAATGCAGTCCGACAAGCAAAAAACAATGTCCATACAATGGGGTCTTAAAGTTTTGAATATATGCT
Unaligned ( gi|45921 ): GGCAAATAATAGTAGGTTCACCTATAATTTAAGAATTTGGTGTATCCGAAAAAAGGATCACATAGAACGACTATGCATAGCATCAAAACATGAAAGCGATTTATAACATCATATTGAAGCCCCA
Alignments
lowQualScore : 111111111 1111
lowQualScore : 1 2 1 77 1 2 1 1 4 2 1 1 444 1 2 333 3 1 22 0 1 1 1 333 22 888 1 1 000000000 333 1 1 1 2 2 7777 22 1 1 22 1 0 1 3 1 22 2 444 4444 1 1 4 1 2 88 3 3 0 4 1
lowQualScore : . . . .. . . . . . . . . ... . . ... . . .. . . . . ... .. ... . . ......... ... . . . . . .... .. . . .. . . . . . .. . ... .... . . . . . .. . . . . .
lowQualScore : 0 4 8 11 0 4 8 0 1 1 7 8 000 8 8 222 9 0 66 4 4 6 0 333 66 000 0 2 333333333 555 9 8 7 0 0 0000 88 4 6 88 7 8 7 6 0 88 6 222 4444 0 0 4 0 5 55 1 1 2 6 4
consensus : CCAACCCATNTCGCCGGCAATNG-CTGCAGTTGGCGTAT-ATTTGCCAGCTCCCAGAA-A--GAATCG-CATNGCTCTATTT---TGNATNGCGTCTATACACGAAAANG---A--TTTANNGCCCCATATTGCAGCCCCGTA--CGA-T--ATA---ACAGACCANA-CA-A--NTGAA-TCAAACAA--CTTTGTANATACNTTATANGGCATNC--CACC--TAANC-NTTTATACTTNGCAATTAANAGACCNAGGGCACGACCGGC-GCTT-TGAGCCACTATTTTTGCTGT
Reference ( family-764 ) : CCAACCCATNTCGCCNGAAATNG-CTGCAGTNGGCGTAT-ATTTGCCAGCTCCCAGAA-A--GAATCG-CATNGCTCTATTT---TGTATNGCGTCTATACACGAAAANG---A--TTTAANGCCCCATATTGCAGCNCCGTA--CGA-T--ATA---ACAGGCCANA-CA-A--NTGAA-TCAAACAA--CTTTGTANATACNTTATAGGGCATNC--CACC--TAANC-NTTTATATTTNGCAATNAATAGACCNAGGGCACGACCGGC-GCTT-TGAGCCACTATTTTTGCTGT
gi|45917 : CCATTTCACCGACTACTG-CTGAATTTGGTGTAT-ATTTGCCAGCCCCAAGAA-A--GAATCG-CATAGCACGGTTA---TGAACAGCATCAATACATGAAAATG---A--TTTACAACCCCATATTGAAGCCCCATA----A-TTAATT---ACAGGCCATA-CA-A--TGGAG-TCATAAAG--TTTTGTATATACGTTATATGGGACTC--C-TC--TAATCAATTTACATTTAGCAATTAAATTACCAATGGCACAACTTCC-ACTC-TGCGCGATAGCTTTAGCTGT
gi|45918 : gacgaacaatagtaggttgcctagCCAAGTCATTTCACCGACTACTG-CTGCATTTGGCGTAT-AATTGCCAACCCCAAGAA-A--GAATCG-CATAGCACGGTAA---TGACCAGCATCAATACATGGAAATG---A--TTTACAACCCCATATTGCAGCCCCATA---GT-TA-ATT---ACAGGCCATA-CA-A---TGAAGTCATAAAG--TTTTGTATATACGTTATATGGGACTC--CTCC---AATCAATTTACAATTAGTAATTAAAAGACCAAGGGCACGACTTCC-TCTC-TGCGCGACAGCTTTAGCTGT
gi|45919 : gacgaacaatagtaggttgCCAAGCCATTTCACCAACAATAG-CTGAATTTTGCGTAT-ATTTGCCAACCCCCAAAA-A--GAATCG-CATAGCACGATTA---TGAACAGCATCAATACATGAAAATG---A--TTTACAACCCCATATTGAAGCCCCATA----A-TTAATT---ACAGGCCATA-CA-A--TGGAG-TCATAAAG--CTTTGTATATACATTATAAGGAACTC--CTCC---AATTATTTTGCATTTAGCAATTAAATGACCAAGGGCACGACTTCC-ACTC-TGCGCGACAGCTTTAGCTGTaa
gi|45920 : gacgaacaatagtaggttgCCAAGCCATTTCACCGACAATTG-CTGAATTTGGCGTGT-ATTTGCTAACTCTCAGCATA--GCATAG-TA-CGCT-TATTA------ATAGCGTCAATACATGAAAATG---A--TTTACACCCCCAAATTGCAGTCCCAT-----A-T--TTATTTACAGACCATA-CA-ATGGTGA---CATAAGG--TTTTG---------TATGGGAC-TCCTTCAAT--TAA----TTTGCATTAAGCAATTAAAAGACCAAGGGTACGACTTTC-ACTC-TGCGCTACAGCTTTAGCTGTaa
gi|45921 : gacgaacaatagtaggttgAAAA-A--GGATCA-CATAGAACGACTA---TGCATAGCATCAAAACATGAAAGCG---A--TTTATAACATCATATTGAAGCCCCaa
gi|45923 : ggcaaataatagtaggttcacctataatttaagaatttggtgtatccgaCCAAGCCATTTCATCGACAACTG-CTGATTTTGGCGTAT-ATTTGCCAACCCCAAGAA-A--GAATCG-TATAGCACGGTTA---TGAACAGCATCAATAGATGAAAATA---A--TTAACAACCCAATATTGCAGCCTCATA----A-TTAATT---ACAGGCCAAA-CA-A--TTGAG-TCATAAAA--GTTTGTATCAACGTTATATGGGACTC--CTCCAATAA---ATTTACATTTAGCAATTAAAAGACCAAGGGCACGA--------TT-T---CCACTATa
gi|45924 : caatagtaggttgCCAGCCTGTGTCACCGAGCACTC-CGGCATTTGGCGTAT-ATCGCCCTACCCCGAGAA-A--GAATC----TGGCTGCACGTAGCTGCACAGTTTTTATACAAGCATGTT---G--CTTACTTCCCCATATGGCAGCCCCGTAGTTGATT--GTG---CT---CCACA-CC-A--TGGTA-TCGTATAG--TTTCGTGTATGTTCCAAATGGTAAGC--C-CC--CAAACGATTTAAACTTAGAAATGACAAGACTTAGTGCgcacgatagcttttaatgtaa
gi|45925 : tagtgattgctcCCATATCGCCAGCCATTG-CAGCCGACGGAGCATTACGTGTC-GTACCAAGAA-A--CGCTCT-CATAGCTCTGTGT---TGTATAGCATCTATACATGAGAAAG---A--TCGAGTTCCCCAAATGTCTGCACTGTA--AGC-T--ACA---ACGGACCATA-CC-A--TTGAG-TAAAACAA--TTTTGTATACACATTATACCGCATAC--CTTC--TCATG-TTTTAAATTTTGCAATTAACAGACC
gi|45926 : aggtttccatgCCAACCTATTTCACCAGCAGTCG-CTGCATTTGGAGCGT-ATTTTCCTACCCCCAAAA-A--GAATAG-CATAGCTCGATTT---TGGATGGCGTCTACACAAGAAAAAG---ACATTTCA--CCCCATATTGCAGCACCATA--TGC-A--ACG---GCTGGCCAAACCATA--CTG---TCATATAA--TTTTGTGAAAACATTATACGGCATAC--CACC--TAGAG-ATTCATATTTTGCTATTAAAAGACCGAGAGC
gi|45927 : ggttggcacCAACCTATTTCACAAGCAGTTGTCTGCATTTGGAGTGT-ACT--CTAACCCCCAAAA-T--GAATCG-CATAGCTCGATTT---TGGATGGCGTCTACACAAGAAAA
gi|45928 : ggttgacactCCATCCCATATCACCAGACATTG-CGGCTGTTGGTGAGA-ATTTACAGACTCCTA-AA-A--GAACCAACAT-GCTCTATTT---TGAGCCATTTTTATACACGAAAATGTCCA--TTT----CCCCATATGGCAGCCCCATA--CGA-A--ATA---ATATACTATA-CC-A--GTGAG-TCATACAA--CTTTGTATATACATTATATAGCATAC--CACC--AAGTA-ATTTATATTTTGCTATTAACACTCCAAGTGCTCTACCGTCAGATTGTGAGACA--ACGTTTGCAGT
gi|45929 : gttgCCAACCCATATCGCCTGAAATGG-TTGCAGTAGGTGTAT-ATTTGCCAGTTCCCAGAA-A--AAATCG-CATCGCCCTATTT---TGTATTGAATTTATGCACGAATAAG---A--TTTAAAGCCCCATATTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GTGAA-TTAAACAA--CTTTGTAAATACTTTATGGGGCATTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGTaa
gi|45930 : CCAACCCATATCGCCTGAAATGG-CTGCAGTAGGTGTAT-ATTTGCCAGTTCCCAGAA-A--AAATCG-CATCGCCCTATTT---TGTATTGAATTTATGCACGAATAAG---A--TTTAACGCCCCATATTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GTGAA-TTAAACAA--CTTTGTAAATACTTTATGGGGCATTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACATAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGT
gi|45931 : CCAACCCATGTCGCCTGAAATGG-CTGCAGTAGGTGTAT-ATTTGCCAGTTCCTAGAA-A--AAATCG-CATCGCTCTATTT---TGTATTGAATTTATGCACGAATAGG---A--TTTAACGCCCCATACTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GCGAA-TCAATCAA--CTGTGTAAATACTTTATGGGGCGTTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGTCACTATTTTTGCTGT
gi|45932 : CCAACCCATGTCGCCTGAAATGG-CTGCAGTAGGTGTAT-ATTTGCCAGTTCCTAGAA-A--AAATCG-CATCGCTCTATTT---TGTATTGAATTTATGCACGAATAGG---A--TTTAACGCCCCATACTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GCGAA-TCAATCAA--CTGTGTAAATACTTTATGGGGCGTTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGTCACTATTTTTGCTGT
gi|45933 : CCAGCCCATATCACCAGCCACAG-TAGATGTTGGGGTAT-ATTTGCCAACTCCAAGAT-A--AAAACG-CATTGCTCTATTT---TAAATCGTGTTGATACATGAATATG---A--TTTAAAGCTCCA-ATGGCAGCACCGTA--CGA-A--ATA---ACTGACCAGA-CA-C--AACAA-TCAAA-AAGTTTTTTTAAAAACATCATAAGGCATAC--CGCC--CATAC-TTTTATAATTTACAA
gi|45934 : CCAACCCATATCGCCTGAAATGG-CTGCGGTAGGTGTAT-ATTTGCCAGTTCCCAGAA-ATAAAATCT-CATCGCTTTATTT---TGTATTTAATTAATGCACGAATAAG---A--TTTAAAGCCCCCTATTGTAGCTCCATA--CGA-T--ATA---AC------------------AA-TCAAACAA--CTTTGTAAATACCTAACGGGGCATTC--CACC--TAAGC-GTTTATACCTGGTAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCcatttttag
gi|45935 : CCAGCCCATATC---------AG-CT---GTTGGAGTAT-ATTTGCCATCTCCAAGAT-A--AAAACG-CATTGCTCCATTT---TGAATTGTGT-TGTACATGAATATG---A--TTTAAAGCCCCAAATGGCAGCACTGTA--CGA-A--ATA---ACTGGCTAGA-CA-C--AAGAA-TAAAAAAG--TTATGAAAAAACGTCATAAGGCATAC--CGCC--CATAC-TTTTATATTTTGCAATCAGTAAACCCAATGCACGACTGGC-ACTT-TGAGCAAC-ATTTTT
gi|45936 : aaggcatGGTGTAT-ATTTGCCAGTTCCCAAAA-A--AAATAG-CATCGCTCTATTT---TGTATTGAATTTATGCACGAATAAG---A--TTTAACGCCCCATATTGTAGCTCCATA--CGA-T--ATA---GCTGGCCAAA-CA-A--GTGAA-TCAAACAA--CTTTGTAAATACTTTATGGGGCATTC--CACT--TAAGC-TTTTATACCTGACAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGTagtcataa
gi|45937 : ctgaatatattccaT-ATTTGCCAGTTCCCAGAA-A---AATAG-CATCGCTCTATTT---TGTATTGAATTTAAGCACGAAAAAG---A--TTTAACGCCCCATATTGCAGCTCCATA--CCA-T--ATA---ATAGCCCAAA-CA-A--GCGAA-TCAAACAA--CTTTATAGATATTGTAAAGGGCATCC--CACC--
gi|45938 : AGAA-A--TGCTCT-CATAGCTCTACTC---TGTATAGCGTCTTTACATGAGAAAG---A--TTGTGTTCTCCAAATAGCTGCACCGTA--TGC-T--ACA---ATAGACCACA-CT-A--TTGAC-TCAAACAG--TTTTGTATAAACTTTATATGGCATAC--CACC--CAATT-ATTTATATTTTGCAATTAACAGACCaa
gi|45939 : AGAA-A--TGCTCT-CATAGCTCTACTC---TGTATAGCGTCTTTACATGAGAAAG---A--TTGTGTTCTCCAAATAGCTGCACCGTA--TGC-T--ACA---ATAGACCACA-CT-A--TTGAC-TCAAACAG--TTTTGTATAAACTTTATATGGCATAC--CACC--CAATT-ATTTATATTTTGCAATTAACAGACC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|45922 ): GAACAATGATAGGTTACCAGCCATTTCAGCGACAATTTGGCGACTAATCCCTTAAAATATCATATAGCACGATAACGAACAGCGCCAATACATAAAAACTCCGTAATGCAGTCCGACAAGCAAAAAACAATGTCCATACAATGGGGTCTTAAAGTTTTGAATATATGCT
Alignments
lowQualScore : 111111111 1111
lowQualScore : 1 2 66 0 1 2 0 3 4 2 1 1 444 1 2 3333 1 1 22 0 1 1 1 333 2 1 222222222 333 1 1 2 2 7777 22 1 1 22 1 0 1 1 1 22 2 444 4444 1 1 1 1 1 2 88 3 3 0 4 1
lowQualScore : . . .. . . . . . . . . . ... . . .... . . .. . . . . ... . . ......... ... . . . . .... .. . . .. . . . . . .. . ... .... . . . . . . .. . . . . .
lowQualScore : 0 4 88 3 0 4 3 2 1 1 7 8 000 8 8 7777 0 0 66 4 4 6 0 777 5 2 777777777 555 9 7 0 0 0000 88 4 6 88 7 8 7 0 0 88 6 222 4444 1 0 8 0 0 5 55 1 1 2 6 4
consensus : CCAACCCATNTCGCCG-GCAATNG-CTGCANTTGGCGTAT-ATTTGCCAGCTCCCAGAA-A--GAATCG-CATNGCTCTATTT---TGNATNGCGTCTATACACGAAAANGATTTANNGCCCCATATTGCAGCCCCGTA--CGA-T--ATA---ACAGACCANA-CA-A--NTGAA-TCAAACAA--CTTTGTANATACNTTATANGGCATNC--CACC--TAANC-NTTTATACTTNGCAATTAANAGACCNAGGGCACGACCGGC-GCTT-TGAGCCACTATTTTTGCTGT
Reference ( family-764 ) : CCAACCCATNTCGCCG-GCAATNG-CTGCAGTTGGCGTAT-ATTTGCCAGCTCCCAGAA-A--GAATCG-CATNGCTCTATTT---TGNATNGCGTCTATACACGAAAANGATTTANNGCCCCATATTGCAGCCCCGTA--CGA-T--ATA---ACAGACCANA-CA-A--NTGAA-TCAAACAA--CTTTGTANATACNTTATANGGCATNC--CACC--TAANC-NTTTATACTTNGCAATTAANAGACCNAGGGCACGACCGGC-GCTT-TGAGCCACTATTTTTGCTGT
gi|45917 : CCATTTCACCG-ACTACTG-CTGAATTTGGTGTAT-ATTTGCCAGCCCCAAGAA-A--GAATCG-CATAGCACGGTTA---TGAACAGCATCAATACATGAAAATGATTTACAACCCCATATTGAAGCCCCATA----A-TTAATT---ACAGGCCATA-CA-A--TGGAG-TCATAAAG--TTTTGTATATACGTTATATGGGACTC--C-TC--TAATCAATTTACATTTAGCAATTAAATTACCAATGGCACAACTTCC-ACTC-TGCGCGATAGCTTTAGCTGT
gi|45918 : gacgaacaatagtaggttgcctagCCAAGTCATTTCACCG-ACTACTG-CTGCATTTGGCGTAT-AATTGCCAACCCCAAGAA-A--GAATCG-CATAGCACGGTAA---TGACCAGCATCAATACATGGAAATGATTTACAACCCCATATTGCAGCCCCATA---GT-TA-ATT---ACAGGCCATA-CA-A---TGAAGTCATAAAG--TTTTGTATATACGTTATATGGGACTC--CTCC---AATCAATTTACAATTAGTAATTAAAAGACCAAGGGCACGACTTCC-TCTC-TGCGCGACAGCTTTAGCTGT
gi|45919 : gacgaacaatagtaggttgCCAAGCCATTTCACCA-ACAATAG-CTGAATTTTGCGTAT-ATTTGCCAACCCCCAAAA-A--GAATCG-CATAGCACGATTA---TGAACAGCATCAATACATGAAAATGATTTACAACCCCATATTGAAGCCCCATA----A-TTAATT---ACAGGCCATA-CA-A--TGGAG-TCATAAAG--CTTTGTATATACATTATAAGGAACTC--CTCC---AATTATTTTGCATTTAGCAATTAAATGACCAAGGGCACGACTTCC-ACTC-TGCGCGACAGCTTTAGCTGTaa
gi|45920 : gacgaacaatagtaggttgCCAAGCCATTTCACCG-ACAATTG-CTGAATTTGGCGTGT-ATTTGCTAACTCTCAGCATA--GCATAG-TA-CGCT-TATT------AATAGCGTCAATACATGAAAATGATTTACACCCCCAAATTGCAGTCCCATA------T--TTATTTACAGACCATA-CA-ATGGTGA---CATAAGG--TTTTG---------TATGGGAC-TCCTTCAAT--TAA----TTTGCATTAAGCAATTAAAAGACCAAGGGTACGACTTTC-ACTC-TGCGCTACAGCTTTAGCTGTaa
gi|45921 : gacgaacaatagtaggttgAAAA-A--GGATCA-CATAGAACGACTA---TGCATAGCATCAAAACATGAAAGCGATTTATAACATCATATTGAAGCCCCaa
gi|45923 : ggcaaataatagtaggttcacctataatttaagaatttggtgtatccgaCCAAGCCATTTCATCG-ACAACTG-CTGATTTTGGCGTAT-ATTTGCCAACCCCAAGAA-A--GAATCG-TATAGCACGGTTA---TGAACAGCATCAATAGATGAAAATAATTAACAACCCAATATTGCAGCCTCATA----A-TTAATT---ACAGGCCAAA-CA-A--TTGAG-TCATAAAA--GTTTGTATCAACGTTATATGGGACTC--CTCCAATAA---ATTTACATTTAGCAATTAAAAGACCAAGGGCACGA--------TT-T---CCACTATa
gi|45924 : caatagtaggttgCCAGCCTGTGTCACCGAGCACTC--CGGCATTTGGCGTAT-ATCGCCCTACCCCGAGAA-A--GAATC----TGGCTGCACGTAGCTGCACAGTTTTTATACAAGCATGTTGCTTACTTCCCCATATGGCAGCCCCGTAGTTGATT--GTG---CT---CCACA-CC-A--TGGTA-TCGTATAG--TTTCGTGTATGTTCCAAATGGTAAGC--C-CC--CAAACGATTTAAACTTAGAAATGACAAGACTTAGTGCgcacgatagcttttaatgtaa
gi|45925 : tagtgattgctcCCATATCGCCA-GCCATTG-CAGCCGACGGAGCATTACGTGTC-GTACCAAGAA-A--CGCTCT-CATAGCTCTGTGT---TGTATAGCATCTATACATGAGAAAGATCGAGTTCCCCAAATGTCTGCACTGTA--AGC-T--ACA---ACGGACCATA-CC-A--TTGAG-TAAAACAA--TTTTGTATACACATTATACCGCATAC--CTTC--TCATG-TTTTAAATTTTGCAATTAACAGACC
gi|45926 : aggtttccatgCCAACCTATTTCACCA-GCAGTCG-CTGCATTTGGAGCGT-ATTTTCCTACCCCCAAAA-A--GAATAG-CATAGCTCGATTT---TGGATGGCGTCTACACAAGAAAAAGACATTTCACCCCATATTGCAGCACCATA--TGC-A--ACG---GCTGGCCAAACCATA--CTG---TCATATAA--TTTTGTGAAAACATTATACGGCATAC--CACC--TAGAG-ATTCATATTTTGCTATTAAAAGACCGAGAGC
gi|45927 : ggttggcacCAACCTATTTCACAA-GCAGTTGTCTGCATTTGGAGTGT-ACT--CTAACCCCCAAAA-T--GAATCG-CATAGCTCGATTT---TGGATGGCGTCTACACAAGAAAA
gi|45928 : ggttgacactCCATCCCATATCACCA-GACATTG-CGGCTGTTGGTGAGA-ATTTACAGACTCCTA-AA-A--GAACCAACAT-GCTCTATTT---TGAGCCATTTTTATACACGAAAATG-TCCATTTCCCCATATGGCAGCCCCATA--CGA-A--ATA---ATATACTATA-CC-A--GTGAG-TCATACAA--CTTTGTATATACATTATATAGCATAC--CACC--AAGTA-ATTTATATTTTGCTATTAACACTCCAAGTGCTCTACCGTCAGATTGTGAGACA--ACGTTTGCAGT
gi|45929 : gttgCCAACCCATATCGCCT-GAAATGG-TTGCAGTAGGTGTAT-ATTTGCCAGTTCCCAGAA-A--AAATCG-CATCGCCCTATTT---TGTATTGAATTTATGCACGAATAAGATTTAAAGCCCCATATTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GTGAA-TTAAACAA--CTTTGTAAATACTTTATGGGGCATTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGTaa
gi|45930 : CCAACCCATATCGCCT-GAAATGG-CTGCAGTAGGTGTAT-ATTTGCCAGTTCCCAGAA-A--AAATCG-CATCGCCCTATTT---TGTATTGAATTTATGCACGAATAAGATTTAACGCCCCATATTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GTGAA-TTAAACAA--CTTTGTAAATACTTTATGGGGCATTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACATAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGT
gi|45931 : CCAACCCATGTCGCCT-GAAATGG-CTGCAGTAGGTGTAT-ATTTGCCAGTTCCTAGAA-A--AAATCG-CATCGCTCTATTT---TGTATTGAATTTATGCACGAATAGGATTTAACGCCCCATACTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GCGAA-TCAATCAA--CTGTGTAAATACTTTATGGGGCGTTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGTCACTATTTTTGCTGT
gi|45932 : CCAACCCATGTCGCCT-GAAATGG-CTGCAGTAGGTGTAT-ATTTGCCAGTTCCTAGAA-A--AAATCG-CATCGCTCTATTT---TGTATTGAATTTATGCACGAATAGGATTTAACGCCCCATACTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GCGAA-TCAATCAA--CTGTGTAAATACTTTATGGGGCGTTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGTCACTATTTTTGCTGT
gi|45933 : CCAGCCCATATCACCA-GCCACAG-TAGATGTTGGGGTAT-ATTTGCCAACTCCAAGAT-A--AAAACG-CATTGCTCTATTT---TAAATCGTGTTGATACATGAATATGATTTAAAGCTCCA-ATGGCAGCACCGTA--CGA-A--ATA---ACTGACCAGA-CA-C--AACAA-TCAAA-AAGTTTTTTTAAAAACATCATAAGGCATAC--CGCC--CATAC-TTTTATAATTTACAA
gi|45934 : CCAACCCATATCGCCT-GAAATGG-CTGCGGTAGGTGTAT-ATTTGCCAGTTCCCAGAA-ATAAAATCT-CATCGCTTTATTT---TGTATTTAATTAATGCACGAATAAGATTTAAAGCCCCCTATTGTAGCTCCATA--CGA-T--ATA---AC------------------AA-TCAAACAA--CTTTGTAAATACCTAACGGGGCATTC--CACC--TAAGC-GTTTATACCTGGTAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCcatttttag
gi|45935 : CCAGCCCATATC----------AG-CTG---TTGGAGTAT-ATTTGCCATCTCCAAGAT-A--AAAACG-CATTGCTCCATTT---TGAATTGTGT-TGTACATGAATATGATTTAAAGCCCCAAATGGCAGCACTGTA--CGA-A--ATA---ACTGGCTAGA-CA-C--AAGAA-TAAAAAAG--TTATGAAAAAACGTCATAAGGCATAC--CGCC--CATAC-TTTTATATTTTGCAATCAGTAAACCCAATGCACGACTGGC-ACTT-TGAGCAAC-ATTTTT
gi|45936 : aaggcatGGTGTAT-ATTTGCCAGTTCCCAAAA-A--AAATAG-CATCGCTCTATTT---TGTATTGAATTTATGCACGAATAAGATTTAACGCCCCATATTGTAGCTCCATA--CGA-T--ATA---GCTGGCCAAA-CA-A--GTGAA-TCAAACAA--CTTTGTAAATACTTTATGGGGCATTC--CACT--TAAGC-TTTTATACCTGACAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGTagtcataa
gi|45937 : ctgaatatattccaT-ATTTGCCAGTTCCCAGAA-A---AATAG-CATCGCTCTATTT---TGTATTGAATTTAAGCACGAAAAAGATTTAACGCCCCATATTGCAGCTCCATA--CCA-T--ATA---ATAGCCCAAA-CA-A--GCGAA-TCAAACAA--CTTTATAGATATTGTAAAGGGCATCC--CACC--
gi|45938 : AGAA-A--TGCTCT-CATAGCTCTACTC---TGTATAGCGTCTTTACATGAGAAAGATTGTGTTCTCCAAATAGCTGCACCGTA--TGC-T--ACA---ATAGACCACA-CT-A--TTGAC-TCAAACAG--TTTTGTATAAACTTTATATGGCATAC--CACC--CAATT-ATTTATATTTTGCAATTAACAGACCaa
gi|45939 : AGAA-A--TGCTCT-CATAGCTCTACTC---TGTATAGCGTCTTTACATGAGAAAGATTGTGTTCTCCAAATAGCTGCACCGTA--TGC-T--ACA---ATAGACCACA-CT-A--TTGAC-TCAAACAG--TTTTGTATAAACTTTATATGGCATAC--CACC--CAATT-ATTTATATTTTGCAATTAACAGACC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|45922 ): GAACAATGATAGGTTACCAGCCATTTCAGCGACAATTTGGCGACTAATCCCTTAAAATATCATATAGCACGATAACGAACAGCGCCAATACATAAAAACTCCGTAATGCAGTCCGACAAGCAAAAAACAATGTCCATACAATGGGGTCTTAAAGTTTTGAATATATGCT
Alignments
lowQualScore : 11 1111
lowQualScore : 1 3 8888888 1 2 333 3 1 1 333 1 2 0 4444 1 1 22 0 1 2 1 333 1 1 888 2 00 333 1 0 1 2 2 7777 22 1 2 22 1 0 1 1 1 22 1 555 4444 0 1 2 1 1 2 88 3 3 0 4 1
lowQualScore : . . ....... . . ... . . . ... . . . .... . . .. . . . . ... . . ... . .. ... . . . . . .... .. . . .. . . . . . .. . ... .... . . . . . . .. . . . . .
lowQualScore : 0 1 8888888 0 5 444 4 0 9 555 9 9 4 3333 0 0 99 8 2 1 0 111 9 8 111 1 88 777 6 3 7 1 1 8888 66 9 2 99 7 5 7 0 0 99 8 000 2222 8 0 5 0 0 5 55 1 1 2 6 4
consensus : CCAACCCATNTCGCCG-GC---AATNG-CTGCATTTGGCGTATATTTGCCAGCTCCCAGAA-A--GAATCG-CATNGCTCTATTT---TGNATNGCGTCTATACACGAANANGATTTANNGCCCCATATTGCAGCCCCATA--CGA-T--ATA---ACAGGCCANA-CA-A--GTGAA-TCAAACAG--CTTTGTANATACNTTATANGGCATNC--CACC--TAANC-NTTTATACTTNGCAATNAGNAGACCNAGGGCACGACCGGC-GCTT-TGAGCCACTATTTTTGCTGT
Reference ( family-764 ) : CCAACCCATNTCGCCG-GC---AATNG-CTGCANTTGGCGTATATTTGCCAGCTCCCAGAA-A--GAATCG-CATNGCTCTATTT---TGNATNGCGTCTATACACGAAAANGATTTANNGCCCCATATTGCAGCCCCGTA--CGA-T--ATA---ACAGACCANA-CA-A--NTGAA-TCAAACAA--CTTTGTANATACNTTATANGGCATNC--CACC--TAANC-NTTTATACTTNGCAATTAANAGACCNAGGGCACGACCGGC-GCTT-TGAGCCACTATTTTTGCTGT
gi|45917 : CCATTTCACCG-AC---TACTG-CTGAATTTGGTGTATATTTGCCAGCCCCAAGAA-A--GAATCG-CATAGCACGGTTA---TGAACAGCATCAATACATGAAAATGATTTACAACCCCATATTGAAGCCCCATA----A-TTAATT---ACAGGCCATA-CA-A--TGGAG-TCATAAAG--TTTTGTATATACGTTATATGGGACTC--C-TC--TAATCAATTTACATTTAGCAATTAAATTACCAATGGCACAACTTCC-ACTC-TGCGCGATAGCTTTAGCTGT
gi|45918 : gacgaacaatagtaggttgcctagCCAAGTCATTTCACCG-AC---TACTG-CTGCATTTGGCGTATAATTGCCAACCCCAAGAA-A--GAATCG-CATAGCACGGTAA---TGACCAGCATCAATACATGGAAATGATTTACAACCCCATATTGCAGCCCCATA---GT-TA-ATT---ACAGGCCATA-CA-A---TGAAGTCATAAAG--TTTTGTATATACGTTATATGGGACTC--CTCC---AATCAATTTACAATTAGTAATTAAAAGACCAAGGGCACGACTTCC-TCTC-TGCGCGACAGCTTTAGCTGT
gi|45919 : gacgaacaatagtaggttgCCAAGCCATTTCACCA-AC---AATAG-CTGAATTTTGCGTATATTTGCCAACCCCCAAAA-A--GAATCG-CATAGCACGATTA---TGAACAGCATCAATACATGAAAATGATTTACAACCCCATATTGAAGCCCCATA----A-TTAATT---ACAGGCCATA-CA-A--TGGAG-TCATAAAG--CTTTGTATATACATTATAAGGAACTC--CTCC---AATTATTTTGCATTTAGCAATTAAATGACCAAGGGCACGACTTCC-ACTC-TGCGCGACAGCTTTAGCTGTaa
gi|45920 : gacgaacaatagtaggttgCCAAGCCATTTCACCG-AC---AATTG-CTGAATTTGGCGTGTATTTGCTAACTCTCAGCATA--GCATAG-TA-CGCT-TATT------AATAGCGTCAATACATGAAAATGATTTACACCCCCAAATTGCAGTCCCAT-----A-T--TTATTTACAGACCATA-CA-ATGGTGA---CATAAGG--TTTTG---------TATGGGAC-TCCTTCAAT--TAA----TTTGCATTAAGCAATTAAAAGACCAAGGGTACGACTTTC-ACTC-TGCGCTACAGCTTTAGCTGTaa
gi|45921 : gacgaacaatagtaggttgAAAA-A--GGATCA-CATAGAACGACTA---TGCATAGCATCAAAACATGAAAGCGATTTATAACATCATATTGAAGCCCCaa
gi|45923 : ggcaaataatagtaggttcacctataatttaagaatttggtgtatccgaCCAAGCCATTTCATCG-AC---AACTG-CTGATTTTGGCGTATATTTGCCAACCCCAAGAA-A--GAATCG-TATAGCACGGTTA---TGAACAGCATCAATAGATGAAAATAATTAACAACCCAATATTGCAGCCTCATA----A-TTAATT---ACAGGCCAAA-CA-A--TTGAG-TCATAAAA--GTTTGTATCAACGTTATATGGGACTC--CTCCAATAA---ATTTACATTTAGCAATTAAAAGACCAAGGGCACGA--------TT-T---CCACTATa
gi|45924 : caatagtaggttgCCAGCCTGTGTCACCGAGC---ACTC--CGGCATTTGGCGTATATCGCCCTACCCCGAGAA-A--GAATC----TGGCTGCACGTAGCTGCACAGTTTTTATACAAGCATGTTGCTTACTTCCCCATATGGCAGCCCCGTAGTTGATT--GTG---CT---CCACA-CC-A--TGGTA-TCGTATAG--TTTCGTGTATGTTCCAAATGGTAAGC--C-CC--CAAACGATTTAAACTTAGAAATGACAAGACTTAGTGCgcacgatagcttttaatgtaa
gi|45926 : tagtgattgctcCCAACCTATTTCACCA-GC---AGTCG-CTGCATTTGGAGCGTATTTTCCTACCCCCAAAA-A--GAATAG-CATAGCTCGATTT---TGGATGGCGTCTACACAAGAAAAAGACATTTCACCCCATATTGCAGCACCATA--TGC-A--ACG---GCTGGCCAAACCATA--CTG---TCATATAA--TTTTGTGAAAACATTATACGGCATAC--CACC--TAGAG-ATTCATATTTTGCTATTAAAAGACCGAGAGC
gi|45927 : ggttggcacCAACCTATTTCACAA-GC---AGTTGTCTGCATTTGGAGTGTACT--CTAACCCCCAAAA-T--GAATCG-CATAGCTCGATTT---TGGATGGCGTCTACACAAGAAAA
gi|45928 : ggttgacactCCATCCCATATCACCA-GA---CATTG-CGGCTGTTGGTGAGAATTTACAGACTCCTA-AA-A--GAACCAACAT-GCTCTATTT---TGAGCCATTTTTATACACGAAAATG-TCCATTTCCCCATATGGCAGCCCCATA--CGA-A--ATA---ATATACTATA-CC-A--GTGAG-TCATACAA--CTTTGTATATACATTATATAGCATAC--CACC--AAGTA-ATTTATATTTTGCTATTAACACTCCAAGTGCTCTACCGTCAGATTGTGAGACA--ACGTTTGCAGT
gi|45929 : gttgCCAACCCATATCGCCT-GA---AATGG-TTGCAGTAGGTGTATATTTGCCAGTTCCCAGAA-A--AAATCG-CATCGCCCTATTT---TGTATTGAATTTATGCACGAATAAGATTTAAAGCCCCATATTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GTGAA-TTAAACAA--CTTTGTAAATACTTTATGGGGCATTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGTaa
gi|45930 : CCAACCCATATCGCCT-GA---AATGG-CTGCAGTAGGTGTATATTTGCCAGTTCCCAGAA-A--AAATCG-CATCGCCCTATTT---TGTATTGAATTTATGCACGAATAAGATTTAACGCCCCATATTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GTGAA-TTAAACAA--CTTTGTAAATACTTTATGGGGCATTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACATAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGT
gi|45931 : CCAACCCATGTCGCCT-GA---AATGG-CTGCAGTAGGTGTATATTTGCCAGTTCCTAGAA-A--AAATCG-CATCGCTCTATTT---TGTATTGAATTTATGCACGAATAGGATTTAACGCCCCATACTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GCGAA-TCAATCAA--CTGTGTAAATACTTTATGGGGCGTTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGTCACTATTTTTGCTGT
gi|45932 : CCAACCCATGTCGCCT-GA---AATGG-CTGCAGTAGGTGTATATTTGCCAGTTCCTAGAA-A--AAATCG-CATCGCTCTATTT---TGTATTGAATTTATGCACGAATAGGATTTAACGCCCCATACTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GCGAA-TCAATCAA--CTGTGTAAATACTTTATGGGGCGTTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGTCACTATTTTTGCTGT
gi|45933 : CCAGCCCATATCACCA-GCCACAGTAG-ATG---TTGGGGTATATTTGCCAACTCCAAGAT-A--AAAACG-CATTGCTCTATTT---TAAATCGTGTTGATACATGAATATGATTTAAAGCTCCA-ATGGCAGCACCGTA--CGA-A--ATA---ACTGACCAGA-CA-C--AACAA-TCAAA-AAGTTTTTTTAAAAACATCATAAGGCATAC--CGCC--CATAC-TTTTATAATTTACAA
gi|45934 : CCAACCCATATCGCCT-GA---AATGG-CTGCGGTAGGTGTATATTTGCCAGTTCCCAGAA-ATAAAATCT-CATCGCTTTATTT---TGTATTTAATTAATGCACGAATAAGATTTAAAGCCCCCTATTGTAGCTCCATA--CGA-T--ATA---AC------------------AA-TCAAACAA--CTTTGTAAATACCTAACGGGGCATTC--CACC--TAAGC-GTTTATACCTGGTAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCcatttttag
gi|45935 : CCAGCCCATATC-------------AG-CTG---TTGGAGTATATTTGCCATCTCCAAGAT-A--AAAACG-CATTGCTCCATTT---TGAATTGTGT-TGTACATGAATATGATTTAAAGCCCCAAATGGCAGCACTGTA--CGA-A--ATA---ACTGGCTAGA-CA-C--AAGAA-TAAAAAAG--TTATGAAAAAACGTCATAAGGCATAC--CGCC--CATAC-TTTTATATTTTGCAATCAGTAAACCCAATGCACGACTGGC-ACTT-TGAGCAAC-ATTTTT
gi|45936 : aaggcatGGTGTATATTTGCCAGTTCCCAAAA-A--AAATAG-CATCGCTCTATTT---TGTATTGAATTTATGCACGAATAAGATTTAACGCCCCATATTGTAGCTCCATA--CGA-T--ATA---GCTGGCCAAA-CA-A--GTGAA-TCAAACAA--CTTTGTAAATACTTTATGGGGCATTC--CACT--TAAGC-TTTTATACCTGACAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGTagtcataa
gi|45937 : ctgaatatattccaTATTTGCCAGTTCCCAGAA-A---AATAG-CATCGCTCTATTT---TGTATTGAATTTAAGCACGAAAAAGATTTAACGCCCCATATTGCAGCTCCATA--CCA-T--ATA---ATAGCCCAAA-CA-A--GCGAA-TCAAACAA--CTTTATAGATATTGTAAAGGGCATCC--CACC--
gi|45938 : AGAA-A--TGCTCT-CATAGCTCTACTC---TGTATAGCGTCTTTACATGAGAAAGATTGTGTTCTCCAAATAGCTGCACCGTA--TGC-T--ACA---ATAGACCACA-CT-A--TTGAC-TCAAACAG--TTTTGTATAAACTTTATATGGCATAC--CACC--CAATT-ATTTATATTTTGCAATTAACAGACCaa
gi|45939 : AGAA-A--TGCTCT-CATAGCTCTACTC---TGTATAGCGTCTTTACATGAGAAAGATTGTGTTCTCCAAATAGCTGCACCGTA--TGC-T--ACA---ATAGACCACA-CT-A--TTGAC-TCAAACAG--TTTTGTATAAACTTTATATGGCATAC--CACC--CAATT-ATTTATATTTTGCAATTAACAGACC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|45922 ): GAACAATGATAGGTTACCAGCCATTTCAGCGACAATTTGGCGACTAATCCCTTAAAATATCATATAGCACGATAACGAACAGCGCCAATACATAAAAACTCCGTAATGCAGTCCGACAAGCAAAAAACAATGTCCATACAATGGGGTCTTAAAGTTTTGAATATATGCT
Unaligned ( gi|45925 ): AGGTTTCCATGCCATATCGCCAGCCATTGCAGCCGACGGAGCATTACGTGTCGTACCAAGAAACGCTCTCATAGCTCTGTGTTGTATAGCATCTATACATGAGAAAGATCGAGTTCCCCAAATGTCTGCACTGTAAGCTACAACGGACCATACCATTGAGTAAAACAATTTTGTATACACATTATACCGCATACCTTCTCATGTTTTAAATTTTGCAATTAACAGACC
Alignments
lowQualScore : 11 1111
lowQualScore : 1 3 8888888 1 2 222 3 1 1 333 1 2 0 4444 1 1 22 0 1 1 1 333 1 888 2 00 333 1 1 1 2 2 8888 22 22 0 22 1 0 1 1 1 22 1 555 4444 0 1 1 1 1 2 88 3 3 0 4 1
lowQualScore : . . ....... . . ... . . . ... . . . .... . . .. . . . . ... . ... . .. ... . . . . . .... .. .. . .. . . . . . .. . ... .... . . . . . . .. . . . . .
lowQualScore : 0 1 8888888 0 5 666 6 7 9 555 9 9 4 3333 0 0 99 8 2 0 0 111 9 111 1 88 777 6 5 7 1 1 9999 66 77 9 33 7 5 7 0 0 99 8 000 2222 8 0 0 0 0 5 55 1 1 2 6 4
consensus : CCAACCCATNTCGCCG-GC---AATNG-CTGCATTTGGCGTATATTTGCCAGCTCCCAGAA-A--GAATCG-CATNGCTCTATTT---TGNATNGCGTCTATACACGAANANGATTTANNGCCCCATATTGCAGCCCCATA--CGA-T--ATA---ACAGGCCANA-CA-A--GTGAA-TCA-AACAG-CTTTGTANATACNTTATANGGCATNC--CACC--TAANC-NTTTATACTTNGCAATNAGNAGACCNAGGGCACGACCGGC-GCTT-TGAGCCACTATTTTTGCTGT
Reference ( family-764 ) : CCAACCCATNTCGCCG-GC---AATNG-CTGCATTTGGCGTATATTTGCCAGCTCCCAGAA-A--GAATCG-CATNGCTCTATTT---TGNATNGCGTCTATACACGAANANGATTTANNGCCCCATATTGCAGCCCCATA--CGA-T--ATA---ACAGGCCANA-CA-A--GTGAA-TCA-AACAG-CTTTGTANATACNTTATANGGCATNC--CACC--TAANC-NTTTATACTTNGCAATNAGNAGACCNAGGGCACGACCGGC-GCTT-TGAGCCACTATTTTTGCTGT
gi|45917 : CCATTTCACCG-AC---TACTG-CTGAATTTGGTGTATATTTGCCAGCCCCAAGAA-A--GAATCG-CATAGCACGGTTA---TGAACAGCATCAATACATGAAAATGATTTACAACCCCATATTGAAGCCCCATA----A-TTAATT---ACAGGCCATA-CA-A--TGGAG-TCA-TAAAG-TTTTGTATATACGTTATATGGGACTC--C-TC--TAATCAATTTACATTTAGCAATTAAATTACCAATGGCACAACTTCC-ACTC-TGCGCGATAGCTTTAGCTGT
gi|45918 : gacgaacaatagtaggttgcctagCCAAGTCATTTCACCG-AC---TACTG-CTGCATTTGGCGTATAATTGCCAACCCCAAGAA-A--GAATCG-CATAGCACGGTAA---TGACCAGCATCAATACATGGAAATGATTTACAACCCCATATTGCAGCCCCATA---GT-TA-ATT---ACAGGCCATA-CA-A---TGAAGTCA-TAAAG-TTTTGTATATACGTTATATGGGACTC--CTCC---AATCAATTTACAATTAGTAATTAAAAGACCAAGGGCACGACTTCC-TCTC-TGCGCGACAGCTTTAGCTGT
gi|45919 : gacgaacaatagtaggttgCCAAGCCATTTCACCA-AC---AATAG-CTGAATTTTGCGTATATTTGCCAACCCCCAAAA-A--GAATCG-CATAGCACGATTA---TGAACAGCATCAATACATGAAAATGATTTACAACCCCATATTGAAGCCCCATA----A-TTAATT---ACAGGCCATA-CA-A--TGGAG-TCA-TAAAG-CTTTGTATATACATTATAAGGAACTC--CTCC---AATTATTTTGCATTTAGCAATTAAATGACCAAGGGCACGACTTCC-ACTC-TGCGCGACAGCTTTAGCTGTaa
gi|45920 : gacgaacaatagtaggttgCCAAGCCATTTCACCG-AC---AATTG-CTGAATTTGGCGTGTATTTGCTAACTCTCAGCATA--GCATAG-TA-CGCT-TATT------AATAGCGTCAATACATGAAAATGATTTACACCCCCAAATTGCAGTCCCAT-----A-T--TTATTTACAGACCATA-CA-ATGGTGA---CA-TAAGG-TTTTG---------TATGGGAC-TCCTTCAAT--TAA----TTTGCATTAAGCAATTAAAAGACCAAGGGTACGACTTTC-ACTC-TGCGCTACAGCTTTAGCTGTaa
gi|45921 : gacgaacaatagtaggttgATTTGGTGTAT-----CCGA-----AAAA-A--GGATCA-CATAGAACGACTA---TGCATAGCATCAAAACATGAAAGCGATTTATAACATCATATTGAAGCCCCAaa
gi|45923 : ggcaaataatagtaggttcacctataatttaagaCCAAGCCATTTCATCG-AC---AACTG-CTGATTTTGGCGTATATTTGCCAACCCCAAGAA-A--GAATCG-TATAGCACGGTTA---TGAACAGCATCAATAGATGAAAATAATTAACAACCCAATATTGCAGCCTCATA----A-TTAATT---ACAGGCCAAA-CA-A--TTGAG-TCATAAAAG--TTTGTATCAACGTTATATGGGACTC--CTCCAATAA---ATTTACATTTAGCAATTAAAAGACCAAGGGCACGA--------TT-T---CCACTAT
gi|45924 : caatagtaggttgCCAGCCTGTGTCACCGAGC---ACTC--CGGCATTTGGCGTATATCGCCCTACCCCGAGAA-A--GAATC----TGGCTGCACGTAGCTGCACAGTTTTTATACAAGCATGTTGCTTACTTCCCCATATGGCAGCCCCGTAGTTGATT--GTG---CT---CCACA-CC-A--TGGTA-TCG-TATAG-TTTCGTGTATGTTCCAAATGGTAAGC--C-CC--CAAACGATTTAAACTTAGAAATGACAAGACTTAGTGCgcacgatagcttttaatgtaa
gi|45926 : tagtgattgctcCCAACCTATTTCACCA-GC---AGTCG-CTGCATTTGGAGCGTATTTTCCTACCCCCAAAA-A--GAATAG-CATAGCTCGATTT---TGGATGGCGTCTACACAAGAAAAAGACATTTCACCCCATATTGCAGCACCATA--TGC-A--ACG---GCTGGCCAAACCATA--CTG---TCA-TATAA-TTTTGTGAAAACATTATACGGCATAC--CACC--TAGAG-ATTCATATTTTGCTATTAAAAGACCGAGAGC
gi|45927 : ggttggcacCAACCTATTTCACAA-GC---AGTTGTCTGCATTTGGAGTGTACT--CTAACCCCCAAAA-T--GAATCG-CATAGCTCGATTT---TGGATGGCGTCTACACAAGAAAA
gi|45928 : ggttgacactCCATCCCATATCACCA-GA---CATTG-CGGCTGTTGGTGAGAATTTACAGACTCCTA-AA-A--GAACCAACAT-GCTCTATTT---TGAGCCATTTTTATACACGAAAATG-TCCATTTCCCCATATGGCAGCCCCATA--CGA-A--ATA---ATATACTATA-CC-A--GTGAG-TCA-TACAA-CTTTGTATATACATTATATAGCATAC--CACC--AAGTA-ATTTATATTTTGCTATTAACACTCCAAGTGCTCTACCGTCAGATTGTGAGACA--ACGTTTGCAGT
gi|45929 : gttgCCAACCCATATCGCCT-GA---AATGG-TTGCAGTAGGTGTATATTTGCCAGTTCCCAGAA-A--AAATCG-CATCGCCCTATTT---TGTATTGAATTTATGCACGAATAAGATTTAAAGCCCCATATTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GTGAA-TTA-AACAA-CTTTGTAAATACTTTATGGGGCATTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGTaa
gi|45930 : CCAACCCATATCGCCT-GA---AATGG-CTGCAGTAGGTGTATATTTGCCAGTTCCCAGAA-A--AAATCG-CATCGCCCTATTT---TGTATTGAATTTATGCACGAATAAGATTTAACGCCCCATATTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GTGAA-TTA-AACAA-CTTTGTAAATACTTTATGGGGCATTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACATAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGT
gi|45931 : CCAACCCATGTCGCCT-GA---AATGG-CTGCAGTAGGTGTATATTTGCCAGTTCCTAGAA-A--AAATCG-CATCGCTCTATTT---TGTATTGAATTTATGCACGAATAGGATTTAACGCCCCATACTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GCGAA-TCA-ATCAA-CTGTGTAAATACTTTATGGGGCGTTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGTCACTATTTTTGCTGT
gi|45932 : CCAACCCATGTCGCCT-GA---AATGG-CTGCAGTAGGTGTATATTTGCCAGTTCCTAGAA-A--AAATCG-CATCGCTCTATTT---TGTATTGAATTTATGCACGAATAGGATTTAACGCCCCATACTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GCGAA-TCA-ATCAA-CTGTGTAAATACTTTATGGGGCGTTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGTCACTATTTTTGCTGT
gi|45933 : CCAGCCCATATCACCA-GCCACAGTAG-ATG---TTGGGGTATATTTGCCAACTCCAAGAT-A--AAAACG-CATTGCTCTATTT---TAAATCGTGTTGATACATGAATATGATTTAAAGCTCCA-ATGGCAGCACCGTA--CGA-A--ATA---ACTGACCAGA-CA-C--AACAA-TCA-AAAAGTTTTTTTAAAAACATCATAAGGCATAC--CGCC--CATAC-TTTTATAATTTACAA
gi|45934 : CCAACCCATATCGCCT-GA---AATGG-CTGCGGTAGGTGTATATTTGCCAGTTCCCAGAA-ATAAAATCT-CATCGCTTTATTT---TGTATTTAATTAATGCACGAATAAGATTTAAAGCCCCCTATTGTAGCTCCATA--CGA-T--ATA---AC------------------AA-TCA-AACAA-CTTTGTAAATACCTAACGGGGCATTC--CACC--TAAGC-GTTTATACCTGGTAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCcatttttag
gi|45935 : CCAGCCCATATC-------------AG-CTG---TTGGAGTATATTTGCCATCTCCAAGAT-A--AAAACG-CATTGCTCCATTT---TGAATTGTGT-TGTACATGAATATGATTTAAAGCCCCAAATGGCAGCACTGTA--CGA-A--ATA---ACTGGCTAGA-CA-C--AAGAA-TAA-AAAAG-TTATGAAAAAACGTCATAAGGCATAC--CGCC--CATAC-TTTTATATTTTGCAATCAGTAAACCCAATGCACGACTGGC-ACTT-TGAGCAAC-ATTTTT
gi|45936 : aaggcatGGTGTATATTTGCCAGTTCCCAAAA-A--AAATAG-CATCGCTCTATTT---TGTATTGAATTTATGCACGAATAAGATTTAACGCCCCATATTGTAGCTCCATA--CGA-T--ATA---GCTGGCCAAA-CA-A--GTGAA-TCA-AACAA-CTTTGTAAATACTTTATGGGGCATTC--CACT--TAAGC-TTTTATACCTGACAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGTagtcataa
gi|45937 : ctgaatatattccaTATTTGCCAGTTCCCAGAA-A---AATAG-CATCGCTCTATTT---TGTATTGAATTTAAGCACGAAAAAGATTTAACGCCCCATATTGCAGCTCCATA--CCA-T--ATA---ATAGCCCAAA-CA-A--GCGAA-TCA-AACAA-CTTTATAGATATTGTAAAGGGCATCC--CACC--
gi|45938 : AGAA-A--TGCTCT-CATAGCTCTACTC---TGTATAGCGTCTTTACATGAGAAAGATTGTGTTCTCCAAATAGCTGCACCGTA--TGC-T--ACA---ATAGACCACA-CT-A--TTGAC-TCA-AACAG-TTTTGTATAAACTTTATATGGCATAC--CACC--CAATT-ATTTATATTTTGCAATTAACAGACCaa
gi|45939 : AGAA-A--TGCTCT-CATAGCTCTACTC---TGTATAGCGTCTTTACATGAGAAAGATTGTGTTCTCCAAATAGCTGCACCGTA--TGC-T--ACA---ATAGACCACA-CT-A--TTGAC-TCA-AACAG-TTTTGTATAAACTTTATATGGCATAC--CACC--CAATT-ATTTATATTTTGCAATTAACAGACC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|45922 ): GAACAATGATAGGTTACCAGCCATTTCAGCGACAATTTGGCGACTAATCCCTTAAAATATCATATAGCACGATAACGAACAGCGCCAATACATAAAAACTCCGTAATGCAGTCCGACAAGCAAAAAACAATGTCCATACAATGGGGTCTTAAAGTTTTGAATATATGCT
Unaligned ( gi|45925 ): AGGTTTCCATGCCATATCGCCAGCCATTGCAGCCGACGGAGCATTACGTGTCGTACCAAGAAACGCTCTCATAGCTCTGTGTTGTATAGCATCTATACATGAGAAAGATCGAGTTCCCCAAATGTCTGCACTGTAAGCTACAACGGACCATACCATTGAGTAAAACAATTTTGTATACACATTATACCGCATACCTTCTCATGTTTTAAATTTTGCAATTAACAGACC
Alignments
lowQualScore : 11 1111
lowQualScore : 1 3 8888888 1 2 222 3 1 1 333 1 2 0 4444 1 1 22 0 1 1 1 333 1 888 2 00 333 1 1 1 2 2 8888 22 22 0 22 1 0 1 1 1 22 1 555 4444 0 1 1 1 1 2 88 3 3 0 4 1
lowQualScore : . . ....... . . ... . . . ... . . . .... . . .. . . . . ... . ... . .. ... . . . . . .... .. .. . .. . . . . . .. . ... .... . . . . . . .. . . . . .
lowQualScore : 0 1 8888888 0 5 666 6 7 9 555 9 9 4 3333 0 0 99 8 2 0 0 111 9 111 1 88 777 6 5 7 1 1 9999 66 77 9 33 7 5 7 0 0 99 8 000 2222 8 0 0 0 0 5 55 1 1 2 6 4
consensus : CCAACCCATNTCGCCG-GC---AATNG-CTGCATTTGGCGTATATTTGCCAGCTCCCAGAA-A--GAATCG-CATNGCTCTATTT---TGNATNGCGTCTATACACGAANANGATTTANNGCCCCATATTGCAGCCCCATA--CGA-T--ATA---ACAGGCCANA-CA-A--GTGAA-TCA-AACAG-CTTTGTANATACNTTATANGGCATNC--CACC--TAANC-NTTTATACTTNGCAATNAGNAGACCNAGGGCACGACCGGC-GCTT-TGAGCCACTATTTTTGCTGT
Reference ( family-764 ) : CCAACCCATNTCGCCG-GC---AATNG-CTGCATTTGGCGTATATTTGCCAGCTCCCAGAA-A--GAATCG-CATNGCTCTATTT---TGNATNGCGTCTATACACGAANANGATTTANNGCCCCATATTGCAGCCCCATA--CGA-T--ATA---ACAGGCCANA-CA-A--GTGAA-TCA-AACAG-CTTTGTANATACNTTATANGGCATNC--CACC--TAANC-NTTTATACTTNGCAATNAGNAGACCNAGGGCACGACCGGC-GCTT-TGAGCCACTATTTTTGCTGT
gi|45917 : CCATTTCACCG-AC---TACTG-CTGAATTTGGTGTATATTTGCCAGCCCCAAGAA-A--GAATCG-CATAGCACGGTTA---TGAACAGCATCAATACATGAAAATGATTTACAACCCCATATTGAAGCCCCATA----A-TTAATT---ACAGGCCATA-CA-A--TGGAG-TCA-TAAAG-TTTTGTATATACGTTATATGGGACTC--C-TC--TAATCAATTTACATTTAGCAATTAAATTACCAATGGCACAACTTCC-ACTC-TGCGCGATAGCTTTAGCTGT
gi|45918 : gacgaacaatagtaggttgcctagCCAAGTCATTTCACCG-AC---TACTG-CTGCATTTGGCGTATAATTGCCAACCCCAAGAA-A--GAATCG-CATAGCACGGTAA---TGACCAGCATCAATACATGGAAATGATTTACAACCCCATATTGCAGCCCCATA---GT-TA-ATT---ACAGGCCATA-CA-A---TGAAGTCA-TAAAG-TTTTGTATATACGTTATATGGGACTC--CTCC---AATCAATTTACAATTAGTAATTAAAAGACCAAGGGCACGACTTCC-TCTC-TGCGCGACAGCTTTAGCTGT
gi|45919 : gacgaacaatagtaggttgCCAAGCCATTTCACCA-AC---AATAG-CTGAATTTTGCGTATATTTGCCAACCCCCAAAA-A--GAATCG-CATAGCACGATTA---TGAACAGCATCAATACATGAAAATGATTTACAACCCCATATTGAAGCCCCATA----A-TTAATT---ACAGGCCATA-CA-A--TGGAG-TCA-TAAAG-CTTTGTATATACATTATAAGGAACTC--CTCC---AATTATTTTGCATTTAGCAATTAAATGACCAAGGGCACGACTTCC-ACTC-TGCGCGACAGCTTTAGCTGTaa
gi|45920 : gacgaacaatagtaggttgCCAAGCCATTTCACCG-AC---AATTG-CTGAATTTGGCGTGTATTTGCTAACTCTCAGCATA--GCATAG-TA-CGCT-TATT------AATAGCGTCAATACATGAAAATGATTTACACCCCCAAATTGCAGTCCCAT-----A-T--TTATTTACAGACCATA-CA-ATGGTGA---CA-TAAGG-TTTTG---------TATGGGAC-TCCTTCAAT--TAA----TTTGCATTAAGCAATTAAAAGACCAAGGGTACGACTTTC-ACTC-TGCGCTACAGCTTTAGCTGTaa
gi|45921 : gacgaacaatagtaggttgATTTGGTGTAT-----CCGA-----AAAA-A--GGATCA-CATAGAACGACTA---TGCATAGCATCAAAACATGAAAGCGATTTATAACATCATATTGAAGCCCCAaa
gi|45923 : ggcaaataatagtaggttcacctataatttaagaCCAAGCCATTTCATCG-AC---AACTG-CTGATTTTGGCGTATATTTGCCAACCCCAAGAA-A--GAATCG-TATAGCACGGTTA---TGAACAGCATCAATAGATGAAAATAATTAACAACCCAATATTGCAGCCTCATA----A-TTAATT---ACAGGCCAAA-CA-A--TTGAG-TCATAAAAG--TTTGTATCAACGTTATATGGGACTC--CTCCAATAA---ATTTACATTTAGCAATTAAAAGACCAAGGGCACGA--------TT-T---CCACTAT
gi|45924 : caatagtaggttgCCAGCCTGTGTCACCGAGC---ACTC--CGGCATTTGGCGTATATCGCCCTACCCCGAGAA-A--GAATC----TGGCTGCACGTAGCTGCACAGTTTTTATACAAGCATGTTGCTTACTTCCCCATATGGCAGCCCCGTAGTTGATT--GTG---CT---CCACA-CC-A--TGGTA-TCG-TATAG-TTTCGTGTATGTTCCAAATGGTAAGC--C-CC--CAAACGATTTAAACTTAGAAATGACAAGACTTAGTGCgcacgatagcttttaatgtaa
gi|45926 : tagtgattgctcCCAACCTATTTCACCA-GC---AGTCG-CTGCATTTGGAGCGTATTTTCCTACCCCCAAAA-A--GAATAG-CATAGCTCGATTT---TGGATGGCGTCTACACAAGAAAAAGACATTTCACCCCATATTGCAGCACCATA--TGC-A--ACG---GCTGGCCAAACCATA--CTG---TCA-TATAA-TTTTGTGAAAACATTATACGGCATAC--CACC--TAGAG-ATTCATATTTTGCTATTAAAAGACCGAGAGC
gi|45927 : ggttggcacCAACCTATTTCACAA-GC---AGTTGTCTGCATTTGGAGTGTACT--CTAACCCCCAAAA-T--GAATCG-CATAGCTCGATTT---TGGATGGCGTCTACACAAGAAAA
gi|45928 : ggttgacactCCATCCCATATCACCA-GA---CATTG-CGGCTGTTGGTGAGAATTTACAGACTCCTA-AA-A--GAACCAACAT-GCTCTATTT---TGAGCCATTTTTATACACGAAAATG-TCCATTTCCCCATATGGCAGCCCCATA--CGA-A--ATA---ATATACTATA-CC-A--GTGAG-TCA-TACAA-CTTTGTATATACATTATATAGCATAC--CACC--AAGTA-ATTTATATTTTGCTATTAACACTCCAAGTGCTCTACCGTCAGATTGTGAGACA--ACGTTTGCAGT
gi|45929 : gttgCCAACCCATATCGCCT-GA---AATGG-TTGCAGTAGGTGTATATTTGCCAGTTCCCAGAA-A--AAATCG-CATCGCCCTATTT---TGTATTGAATTTATGCACGAATAAGATTTAAAGCCCCATATTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GTGAA-TTA-AACAA-CTTTGTAAATACTTTATGGGGCATTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGTaa
gi|45930 : CCAACCCATATCGCCT-GA---AATGG-CTGCAGTAGGTGTATATTTGCCAGTTCCCAGAA-A--AAATCG-CATCGCCCTATTT---TGTATTGAATTTATGCACGAATAAGATTTAACGCCCCATATTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GTGAA-TTA-AACAA-CTTTGTAAATACTTTATGGGGCATTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACATAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGT
gi|45931 : CCAACCCATGTCGCCT-GA---AATGG-CTGCAGTAGGTGTATATTTGCCAGTTCCTAGAA-A--AAATCG-CATCGCTCTATTT---TGTATTGAATTTATGCACGAATAGGATTTAACGCCCCATACTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GCGAA-TCA-ATCAA-CTGTGTAAATACTTTATGGGGCGTTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGTCACTATTTTTGCTGT
gi|45932 : CCAACCCATGTCGCCT-GA---AATGG-CTGCAGTAGGTGTATATTTGCCAGTTCCTAGAA-A--AAATCG-CATCGCTCTATTT---TGTATTGAATTTATGCACGAATAGGATTTAACGCCCCATACTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GCGAA-TCA-ATCAA-CTGTGTAAATACTTTATGGGGCGTTC--CACC--TAAGC-TTTTATACCTGGCAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGTCACTATTTTTGCTGT
gi|45933 : CCAGCCCATATCACCA-GCCACAGTAG-ATG---TTGGGGTATATTTGCCAACTCCAAGAT-A--AAAACG-CATTGCTCTATTT---TAAATCGTGTTGATACATGAATATGATTTAAAGCTCCA-ATGGCAGCACCGTA--CGA-A--ATA---ACTGACCAGA-CA-C--AACAA-TCA-AAAAGTTTTTTTAAAAACATCATAAGGCATAC--CGCC--CATAC-TTTTATAATTTACAA
gi|45934 : CCAACCCATATCGCCT-GA---AATGG-CTGCGGTAGGTGTATATTTGCCAGTTCCCAGAA-ATAAAATCT-CATCGCTTTATTT---TGTATTTAATTAATGCACGAATAAGATTTAAAGCCCCCTATTGTAGCTCCATA--CGA-T--ATA---AC------------------AA-TCA-AACAA-CTTTGTAAATACCTAACGGGGCATTC--CACC--TAAGC-GTTTATACCTGGTAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCcatttttag
gi|45935 : CCAGCCCATATC-------------AG-CTG---TTGGAGTATATTTGCCATCTCCAAGAT-A--AAAACG-CATTGCTCCATTT---TGAATTGTGT-TGTACATGAATATGATTTAAAGCCCCAAATGGCAGCACTGTA--CGA-A--ATA---ACTGGCTAGA-CA-C--AAGAA-TAA-AAAAG-TTATGAAAAAACGTCATAAGGCATAC--CGCC--CATAC-TTTTATATTTTGCAATCAGTAAACCCAATGCACGACTGGC-ACTT-TGAGCAAC-ATTTTT
gi|45936 : aaggcatGGTGTATATTTGCCAGTTCCCAAAA-A--AAATAG-CATCGCTCTATTT---TGTATTGAATTTATGCACGAATAAGATTTAACGCCCCATATTGTAGCTCCATA--CGA-T--ATA---GCTGGCCAAA-CA-A--GTGAA-TCA-AACAA-CTTTGTAAATACTTTATGGGGCATTC--CACT--TAAGC-TTTTATACCTGACAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGTagtcataa
gi|45937 : ctgaatatattccaTATTTGCCAGTTCCCAGAA-A---AATAG-CATCGCTCTATTT---TGTATTGAATTTAAGCACGAAAAAGATTTAACGCCCCATATTGCAGCTCCATA--CCA-T--ATA---ATAGCCCAAA-CA-A--GCGAA-TCA-AACAA-CTTTATAGATATTGTAAAGGGCATCC--CACC--
gi|45938 : AGAA-A--TGCTCT-CATAGCTCTACTC---TGTATAGCGTCTTTACATGAGAAAGATTGTGTTCTCCAAATAGCTGCACCGTA--TGC-T--ACA---ATAGACCACA-CT-A--TTGAC-TCA-AACAG-TTTTGTATAAACTTTATATGGCATAC--CACC--CAATT-ATTTATATTTTGCAATTAACAGACCaa
gi|45939 : AGAA-A--TGCTCT-CATAGCTCTACTC---TGTATAGCGTCTTTACATGAGAAAGATTGTGTTCTCCAAATAGCTGCACCGTA--TGC-T--ACA---ATAGACCACA-CT-A--TTGAC-TCA-AACAG-TTTTGTATAAACTTTATATGGCATAC--CACC--CAATT-ATTTATATTTTGCAATTAACAGACC
blockSeqs : T A AGCCAC T T CAT C A T TAA A A TAGC A A CA T A T CAA C GTT T TA TTT A G T C T TGGT AG TA TT T G T T TT T AAT TCAA A T A A G TC A G A T
blockSeqs : T A GAGC A . AAT C C . G . A A A A CA T A T CAA C T . TA . A G T . . TG G T T T A A T . T T TTAT A T A A G TC . . A T
blockSeqs : T A GAC T . AAT C C . G . C A A A CG T A T CAC C C . A . A A T . . TT G T C T G G C . A C ACGA A T A A G TT . . A T
blockSeqs : T A AAC T . ATT T A . G . A A C A CA T A C TAA C C . . . A G A . . TG A T T T T T T . T T AGA A T A A G GT . . T A
blockSeqs : G A GAC C . CAT C G . G . A A A A CA T A T CAA C C . . . T G C . . CT G T T A A T G . A A TAA A G A T T AG . . T A
blockSeqs : T A GAC C . CAT C C . G . G T C A TT A T T CTT C C . . . A A A . . GT A T T T A C A . A T GCT T T A G A AG . . T A
blockSeqs : T A AGC T . CAT A C . G . A T G G CG A A A TCA A C . . . A A T . . GT A T C A T T A . A T GCT T T C A T AG . . T T
blockSeqs : A A AGC T . CTG A T . G . A T G G CG A A T TTT C C . . . A A A . . GT A A C A T G T . A T GCT G A T T A AG . . T T
blockSeqs : A G AGA G . CAG T C . G . C T A C TT C A A AAG T C . . . A A A . . GC A A C A T G T . A T GCT G A T T A AG . . T A
blockSeqs : A G TGA G . CAG T C . G . C T T T AA C T A ACG T C . . . A A A . . GC A A C A T G T . A C ACT G A T T A GG . . T
blockSeqs : G G TGA G . CAG T T . A . C T T T AA C T G ACG T C . . . T A A . . AA A A C A A G T . G T GCG G A T T A AG . . .
blockSeqs : G G TGA G . CAG T T . A . C T T T AA C T G ACG T C . . . T G G . . AA A A C A C A A . A C ACT T A T T A . . . .
blockSeqs : A A TGA A . CGG T A . A . T T T T AA C T T AAG A T . . . T G G . . GT A A T A G G T . G T GCT G C T C T
blockSeqs : A G TGA G . . G C . A . C T A C TG T T A AAG T T . . . A C A . . GC A A C A T A A . A C TTA T A T T A
blockSeqs : A . . A . . T A . A . T T T T AA C T T AAG A . . . . A A A . . TT C A C G T G T . A C TTA G T C
blockSeqs : A C . A . C T A T TG T T A ACG T . . . . A A C . . TT C A T T T G C . A . A T T C
blockSeqs : T C . A . C T T T AA C T A ACG T . . . . . . C . . T . A T T T T A . A . . T
blockSeqs : . . T . A C T T AA C A A GTT A . . . . . . . . . . . A . . . T A . .
blockSeqs : . T . A C T A CG T A A GTT A
blockSeqs : . . . . . T A CG T A
blockSeqCons : C** ** GCT*
originalCons : CCAACCCATNTCGCCG-GC---AATNG-CTGCATTTGGCGTATATTTGCCAGCTCCCAGAA-A--GAATCG-CATNGCTCTATTT---TGNATNGCGTCTATACACGAANANGATTTANNGCCCCATATTGCAGCCCCATA--CGA-T--ATA---ACAGGCCANA-CA-A--GTGAA-TCA-AACAG-CTTTGTANATACNTTATANGGCATNC--CACC--TAANC-NTTTATACTTNGCAATNAGNAGACCNAGGGCACGACCGGC-GCTT-TGAGCCACTATTTTTGCTGT
finalCons : CCAACCCATNTCGCCG-GC---AATNG-CTGCATTTGGCGTATATTTGCCAGCTCCCAGAA-A--GAATCG-CATNGCTCTATTT---TGNATNGCGTCTATACACGAANANGATTTANNGCCCCATATTGCAGCCCCATAC--GA-T--ATA---ACAGGCCANA-CA-A--GTGAA-TCA-AACAG-CTTTGTANATACNTTATANGGCATNC--CACC--TAAGCT-TTTATACTTNGCAATNAGNAGACCNAGGGCACGACCGGC-GCTT-TGAGCCACTATTTTTGCTGT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|45922 ): GAACAATGATAGGTTACCAGCCATTTCAGCGACAATTTGGCGACTAATCCCTTAAAATATCATATAGCACGATAACGAACAGCGCCAATACATAAAAACTCCGTAATGCAGTCCGACAAGCAAAAAACAATGTCCATACAATGGGGTCTTAAAGTTTTGAATATATGCT
Unaligned ( gi|45925 ): AGGTTTCCATGCCATATCGCCAGCCATTGCAGCCGACGGAGCATTACGTGTCGTACCAAGAAACGCTCTCATAGCTCTGTGTTGTATAGCATCTATACATGAGAAAGATCGAGTTCCCCAAATGTCTGCACTGTAAGCTACAACGGACCATACCATTGAGTAAAACAATTTTGTATACACATTATACCGCATACCTTCTCATGTTTTAAATTTTGCAATTAACAGACC
Alignments
lowQualScore : 11 111111
lowQualScore : 1 3 8888888 1 2 222 3 1 1 333 1 2 0 4444 1 1 22 0 1 1 1 333 1 888 2 00 333 1 1 1 2 2 8888 22 22 0 22 1 0 1 1 1 22 1 7777 888888 0 1 1 1 1 2 88 3 3 0 4 1
lowQualScore : . . ....... . . ... . . . ... . . . .... . . .. . . . . ... . ... . .. ... . . . . . .... .. .. . .. . . . . . .. . .... ...... . . . . . . .. . . . . .
lowQualScore : 0 1 8888888 0 5 666 6 7 9 555 9 9 4 3333 0 0 99 8 2 0 0 111 9 111 1 88 777 6 5 7 1 1 9999 66 77 9 33 7 5 7 0 0 99 8 2222 999999 8 0 0 0 0 5 55 1 1 2 6 4
consensus : CCAACCCATNTCGCCG-GC---AATNG-CTGCATTTGGCGTATATTTGCCAGCTCCCAGAA-A--GAATCG-CATNGCTCTATTT---TGNATNGCGTCTATACACGAANANGATTTANNGCCCCATATTGCAGCCCCATA--CGA-T--ATA---ACAGGCCANA-CA-A--GTGAA-TCA-AACAG-CTTTGTANATACNTTATANGGCATNC--CACC---TAAGC-N--TTTATACTTNGCAATNAGNAGACCNAGGGCACGACCGGC-GCTT-TGAGCCACTATTTTTGCTGT
Reference ( family-764 ) : CCAACCCATNTCGCCG-GC---AATNG-CTGCATTTGGCGTATATTTGCCAGCTCCCAGAA-A--GAATCG-CATNGCTCTATTT---TGNATNGCGTCTATACACGAANANGATTTANNGCCCCATATTGCAGCCCCATA--CGA-T--ATA---ACAGGCCANA-CA-A--GTGAA-TCA-AACAG-CTTTGTANATACNTTATANGGCATNC--CACC---TAAGC-T--TTTATACTTNGCAATNAGNAGACCNAGGGCACGACCGGC-GCTT-TGAGCCACTATTTTTGCTGT
gi|45917 : CCATTTCACCG-AC---TACTG-CTGAATTTGGTGTATATTTGCCAGCCCCAAGAA-A--GAATCG-CATAGCACGGTTA---TGAACAGCATCAATACATGAAAATGATTTACAACCCCATATTGAAGCCCCATA----A-TTAATT---ACAGGCCATA-CA-A--TGGAG-TCA-TAAAG-TTTTGTATATACGTTATATGGGACTC--C-TC---TAATCAA--TTTACATTTAGCAATTAAATTACCAATGGCACAACTTCC-ACTC-TGCGCGATAGCTTTAGCTGT
gi|45918 : gacgaacaatagtaggttgcctagCCAAGTCATTTCACCG-AC---TACTG-CTGCATTTGGCGTATAATTGCCAACCCCAAGAA-A--GAATCG-CATAGCACGGTAA---TGACCAGCATCAATACATGGAAATGATTTACAACCCCATATTGCAGCCCCATA---GT-TA-ATT---ACAGGCCATA-CA-A---TGAAGTCA-TAAAG-TTTTGTATATACGTTATATGGGACTC--CTCC----AATCAA--TTTACAATTAGTAATTAAAAGACCAAGGGCACGACTTCC-TCTC-TGCGCGACAGCTTTAGCTGT
gi|45919 : gacgaacaatagtaggttgCCAAGCCATTTCACCA-AC---AATAG-CTGAATTTTGCGTATATTTGCCAACCCCCAAAA-A--GAATCG-CATAGCACGATTA---TGAACAGCATCAATACATGAAAATGATTTACAACCCCATATTGAAGCCCCATA----A-TTAATT---ACAGGCCATA-CA-A--TGGAG-TCA-TAAAG-CTTTGTATATACATTATAAGGAACTC--CTCCAATTA----T--TTTGCATTTAGCAATTAAATGACCAAGGGCACGACTTCC-ACTC-TGCGCGACAGCTTTAGCTGTaa
gi|45920 : gacgaacaatagtaggttgCCAAGCCATTTCACCG-AC---AATTG-CTGAATTTGGCGTGTATTTGCTAACTCTCAGCATA--GCATAG-TA-CGCT-TATT------AATAGCGTCAATACATGAAAATGATTTACACCCCCAAATTGCAGTCCCAT-----A-T--TTATTTACAGACCATA-CA-ATGGTGA---CA-TAAGG-TTTTG---------TATGGGAC-TCCTTCAAT---TAA------TTTGCATTAAGCAATTAAAAGACCAAGGGTACGACTTTC-ACTC-TGCGCTACAGCTTTAGCTGTaa
gi|45921 : gacgaacaatagtaggttgATTTGGTGTAT-----CCGA-----AAAA-A--GGATCA-CATAGAACGACTA---TGCATAGCATCAAAACATGAAAGCGATTTATAACATCATATTGAAGCCCCAaa
gi|45923 : ggcaaataatagtaggttcacctataatttaagaCCAAGCCATTTCATCG-AC---AACTG-CTGATTTTGGCGTATATTTGCCAACCCCAAGAA-A--GAATCG-TATAGCACGGTTA---TGAACAGCATCAATAGATGAAAATAATTAACAACCCAATATTGCAGCCTCATA----A-TTAATT---ACAGGCCAAA-CA-A--TTGAG-TCATAAAAG--TTTGTATCAACGTTATATGGGACTC--CTCCAA-TAAA-----TTTACATTTAGCAATTAAAAGACCAAGGGCACGA--------TT-T---CCACTAT
gi|45924 : caatagtaggttgCCAGCCTGTGTCACCGAGC---ACTC--CGGCATTTGGCGTATATCGCCCTACCCCGAGAA-A--GAATC----TGGCTGCACGTAGCTGCACAGTTTTTATACAAGCATGTTGCTTACTTCCCCATATGGCAGCCCCGTAGTTGATT--GTG---CT---CCACA-CC-A--TGGTA-TCG-TATAG-TTTCGTGTATGTTCCAAATGGTAAGC--C-CC---CAAAC-GA-TTTAAACTTAGAAATGACAAGACTTAGTGCgcacgatagcttttaatgtaa
gi|45926 : tagtgattgctcCCAACCTATTTCACCA-GC---AGTCG-CTGCATTTGGAGCGTATTTTCCTACCCCCAAAA-A--GAATAG-CATAGCTCGATTT---TGGATGGCGTCTACACAAGAAAAAGACATTTCACCCCATATTGCAGCACCATA--TGC-A--ACG---GCTGGCCAAACCATA--CTG---TCA-TATAA-TTTTGTGAAAACATTATACGGCATAC--CACC---TAGAG-A--TTCATATTTTGCTATTAAAAGACCGAGAGC
gi|45927 : ggttggcacCAACCTATTTCACAA-GC---AGTTGTCTGCATTTGGAGTGTACT--CTAACCCCCAAAA-T--GAATCG-CATAGCTCGATTT---TGGATGGCGTCTACACAAGAAAA
gi|45928 : ggttgacactCCATCCCATATCACCA-GA---CATTG-CGGCTGTTGGTGAGAATTTACAGACTCCTA-AA-A--GAACCAACAT-GCTCTATTT---TGAGCCATTTTTATACACGAAAATG-TCCATTTCCCCATATGGCAGCCCCATA--CGA-A--ATA---ATATACTATA-CC-A--GTGAG-TCA-TACAA-CTTTGTATATACATTATATAGCATAC--CACC----AAG--TAATTTATATTTTGCTATTAACACTCCAAGTGCTCTACCGTCAGATTGTGAGACA--ACGTTTGCAGT
gi|45929 : gttgCCAACCCATATCGCCT-GA---AATGG-TTGCAGTAGGTGTATATTTGCCAGTTCCCAGAA-A--AAATCG-CATCGCCCTATTT---TGTATTGAATTTATGCACGAATAAGATTTAAAGCCCCATATTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GTGAA-TTA-AACAA-CTTTGTAAATACTTTATGGGGCATTC--CACC---TAAGC-T--TTTATACCTGGCAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGTaa
gi|45930 : CCAACCCATATCGCCT-GA---AATGG-CTGCAGTAGGTGTATATTTGCCAGTTCCCAGAA-A--AAATCG-CATCGCCCTATTT---TGTATTGAATTTATGCACGAATAAGATTTAACGCCCCATATTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GTGAA-TTA-AACAA-CTTTGTAAATACTTTATGGGGCATTC--CACC---TAAGC-T--TTTATACCTGGCAATAAGTAAACATAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGT
gi|45931 : CCAACCCATGTCGCCT-GA---AATGG-CTGCAGTAGGTGTATATTTGCCAGTTCCTAGAA-A--AAATCG-CATCGCTCTATTT---TGTATTGAATTTATGCACGAATAGGATTTAACGCCCCATACTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GCGAA-TCA-ATCAA-CTGTGTAAATACTTTATGGGGCGTTC--CACC---TAAGC-T--TTTATACCTGGCAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGTCACTATTTTTGCTGT
gi|45932 : CCAACCCATGTCGCCT-GA---AATGG-CTGCAGTAGGTGTATATTTGCCAGTTCCTAGAA-A--AAATCG-CATCGCTCTATTT---TGTATTGAATTTATGCACGAATAGGATTTAACGCCCCATACTGTAGCTCCATA--CGA-T--ATA---ACAGACCAAA-CA-A--GCGAA-TCA-ATCAA-CTGTGTAAATACTTTATGGGGCGTTC--CACC---TAAGC-T--TTTATACCTGGCAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGTCACTATTTTTGCTGT
gi|45933 : CCAGCCCATATCACCA-GCCACAGTAG-ATG---TTGGGGTATATTTGCCAACTCCAAGAT-A--AAAACG-CATTGCTCTATTT---TAAATCGTGTTGATACATGAATATGATTTAAAGCTCCA-ATGGCAGCACCGTA--CGA-A--ATA---ACTGACCAGA-CA-C--AACAA-TCA-AAAAGTTTTTTTAAAAACATCATAAGGCATAC--CGCC---CATAC-T--TTTATAATTTACAA
gi|45934 : CCAACCCATATCGCCT-GA---AATGG-CTGCGGTAGGTGTATATTTGCCAGTTCCCAGAA-ATAAAATCT-CATCGCTTTATTT---TGTATTTAATTAATGCACGAATAAGATTTAAAGCCCCCTATTGTAGCTCCATA--CGA-T--ATA---AC------------------AA-TCA-AACAA-CTTTGTAAATACCTAACGGGGCATTC--CACC---TAAGC-G--TTTATACCTGGTAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCcatttttag
gi|45935 : CCAGCCCATATC-------------AG-CTG---TTGGAGTATATTTGCCATCTCCAAGAT-A--AAAACG-CATTGCTCCATTT---TGAATTGTGT-TGTACATGAATATGATTTAAAGCCCCAAATGGCAGCACTGTA--CGA-A--ATA---ACTGGCTAGA-CA-C--AAGAA-TAA-AAAAG-TTATGAAAAAACGTCATAAGGCATAC--CGCC---CATAC-T--TTTATATTTTGCAATCAGTAAACCCAATGCACGACTGGC-ACTT-TGAGCAAC-ATTTTT
gi|45936 : aaggcatGGTGTATATTTGCCAGTTCCCAAAA-A--AAATAG-CATCGCTCTATTT---TGTATTGAATTTATGCACGAATAAGATTTAACGCCCCATATTGTAGCTCCATA--CGA-T--ATA---GCTGGCCAAA-CA-A--GTGAA-TCA-AACAA-CTTTGTAAATACTTTATGGGGCATTC--CACT---TAAGC-T--TTTATACCTGACAATAAGTAAACCTAGAGCACGACCAGC-GCTT-TGAGCCACTATTTTTGCAGTagtcataa
gi|45937 : ctgaatatattccaTATTTGCCAGTTCCCAGAA-A---AATAG-CATCGCTCTATTT---TGTATTGAATTTAAGCACGAAAAAGATTTAACGCCCCATATTGCAGCTCCATA--CCA-T--ATA---ATAGCCCAAA-CA-A--GCGAA-TCA-AACAA-CTTTATAGATATTGTAAAGGGCATCC--CACC---
gi|45938 : AGAA-A--TGCTCT-CATAGCTCTACTC---TGTATAGCGTCTTTACATGAGAAAGATTGTGTTCTCCAAATAGCTGCACCGTA--TGC-T--ACA---ATAGACCACA-CT-A--TTGAC-TCA-AACAG-TTTTGTATAAACTTTATATGGCATAC--CACC---CAATT-A--TTTATATTTTGCAATTAACAGACCaa
gi|45939 : AGAA-A--TGCTCT-CATAGCTCTACTC---TGTATAGCGTCTTTACATGAGAAAGATTGTGTTCTCCAAATAGCTGCACCGTA--TGC-T--ACA---ATAGACCACA-CT-A--TTGAC-TCA-AACAG-TTTTGTATAAACTTTATATGGCATAC--CACC---CAATT-A--TTTATATTTTGCAATTAACAGACC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|45922 ): GAACAATGATAGGTTACCAGCCATTTCAGCGACAATTTGGCGACTAATCCCTTAAAATATCATATAGCACGATAACGAACAGCGCCAATACATAAAAACTCCGTAATGCAGTCCGACAAGCAAAAAACAATGTCCATACAATGGGGTCTTAAAGTTTTGAATATATGCT
Unaligned ( gi|45925 ): AGGTTTCCATGCCATATCGCCAGCCATTGCAGCCGACGGAGCATTACGTGTCGTACCAAGAAACGCTCTCATAGCTCTGTGTTGTATAGCATCTATACATGAGAAAGATCGAGTTCCCCAAATGTCTGCACTGTAAGCTACAACGGACCATACCATTGAGTAAAACAATTTTGTATACACATTATACCGCATACCTTCTCATGTTTTAAATTTTGCAATTAACAGACC