lowQualScore : 1
lowQualScore : 3 2 5 2
lowQualScore : . . . .
lowQualScore : 9 7 5 2
consensus : AAAGACGACATGATGGGCAAAACTGTGAACGAGCGAGCCTTCCCTCAGGCCGTTCAGGCCTTTGA
Reference ( gi|36613 ) : AAACACGACATGATGGGCAAAACTGTGAACGAGTGAGCCTTTCCTCAGGCCGTTCAGGCCTTTGA
gi|36614 : AAAGACGACATGGTGGGCAAAACTGTGAACGTGTGAGCCATCTCTCAGGCCGTTCGGGCCTTTGA
gi|36615 : AAAGACGACTTGATGGGCAAAACTGTGAACATGTGAGCCTTCCCACAGGCCATTCAGGCCTTTGA
gi|36616 : AAAGACAACATGATGGGCAAATCTTTGAATGAGTGAGCCTTCCCTTAGGCCGTTTGGGCCTTTGA
gi|36619 : AAAGACGACATGATGGGCAAGACTG--AATGAGAGAGCCTTACCTCAGGCCATTCAAGCCTTTGA
gi|36618 : AAAGACGACATGCTGGTTAAAACCGTGAACGAGACAGCCTTCCCTCAGGCCGTTTAGCCCTTTGA
gi|36623 : AAATATGACATGACGGGCATAATTGCGAACAAGCAAGCCTTCCCTCGGGTCGTTAAAACCTTTGA
gi|36621 : AAAGACGACATGATGGGCAAAACTGTATCCGGGTGAGCCTTCCCTCAGG
gi|36622 : AAAGACGCCATTCCGGTCAAAACCGTGAACGAGAGAGCC-TTCCCCAGTCCGTTTAGCCCTTTGA
gi|36620 : CGACATGACGGGCAAAACTGAGAACAAGCGAGCTTTCCATCAAGTCGTTCAGGCCTTTG
gi|36624 : aaagcCGACATGATGGACTAAACTGTGAACGAGTGAGTC------CAGGCCGATCAGGCCTTCGA
gi|36617 : aaagaacgtGACATGGTGAGCAAAACTGTGAACAAGCGAGCTTTCCCTCGGGCCGTTCAGGCCCCTG
gi|36625 : aaagaaaTGAGCAAAACTGTGAACGAGTGAGCCTTCCTTTAGACCGTTCGGACCTTTGA
gi|36626 : gAAAACTGTGAACAAGCGAGCCTTTCCTCAGGCCGTTCAGGTCTTTGA
gi|36632 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36631 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36630 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36629 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36628 : AGCGAGCCTTCCCTCAGGCCTTTCAGGCCTTTGA
gi|36627 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36634 : AGCGAGCCTTCCCTCAGGCCTTTTAGGCCTTTGA
gi|36633 : AGCGAGCCTTCCCTTAGGCCCTTCAGGCCTTTGA
gi|36635 : AGTGAGCCTTCCCTCAGGCCTTTCAGGCCTT
Alignments
lowQualScore : 7777 3 1
lowQualScore : .... . .
lowQualScore : 1111 3 7
consensus : AAAGA----C-GACATGATGGGCAAAACTGTGAACGAGCGAGCCTTCCCTCAGGCCGTTCAGGCCTTTGA
Reference ( family-763 ) : AAAGA----C-GACATGATGGGCAAAACTGTGAACGAGCGAGCCTTCCCTCAGGCCGTTCAGGCCTTTGA
gi|36613 : AAACA----C-GACATGATGGGCAAAACTGTGAACGAGTGAGCCTTTCCTCAGGCCGTTCAGGCCTTTGA
gi|36614 : AAAGA----C-GACATGGTGGGCAAAACTGTGAACGTGTGAGCCATCTCTCAGGCCGTTCGGGCCTTTGA
gi|36615 : AAAGA----C-GACTTGATGGGCAAAACTGTGAACATGTGAGCCTTCCCACAGGCCATTCAGGCCTTTGA
gi|36616 : AAAGA----C-AACATGATGGGCAAATCTTTGAATGAGTGAGCCTTCCCTTAGGCCGTTTGGGCCTTTGA
gi|36617 : AAAGA----AAGACATGGTGAGCAAAACTGTGAACAAGCGAGCTTTCCCTCGGGCCGTTCAGGCCCCTG
gi|36618 : AAAGA----C-GACATGCTGGTTAAAACCGTGAACGAGACAGCCTTCCCTCAGGCCGTTTAGCCCTTTGA
gi|36619 : AAAGA----C-GACATGATGGGCAAGACTG--AATGAGAGAGCCTTACCTCAGGCCATTCAAGCCTTTGA
gi|36620 : AAAGC----C-GACATGACGGGCAAAACTGAGAACAAGCGAGCTTTCCATCAAGTCGTTCAGGCCTTTG
gi|36621 : AAAGA----C-GACATGATGGGCAAAACTGTATCCGGGTGAGCCTTCCCTCAGG
gi|36622 : AAAGA----C-GCCATTCCGGTCAAAACCGTGAACGAGAGAGCCTTCCC-CAGTCCGTTTAGCCCTTTGA
gi|36623 : AAATA----T-GACATGACGGGCATAATTGCGAACAAGCAAGCCTTCCCTCGGGTCGTTAAAACCTTTGA
gi|36624 : AAAGAACGTC-GACATGATGGACTAAACTGTGAACGAGTGAGTC------CAGGCCGATCAGGCCTTCGA
gi|36625 : TGAGCAAAACTGTGAACGAGTGAGCCTTCCTTTAGACCGTTCGGACCTTTGA
gi|36626 : gAAAACTGTGAACAAGCGAGCCTTTCCTCAGGCCGTTCAGGTCTTTGA
gi|36627 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36628 : AGCGAGCCTTCCCTCAGGCCTTTCAGGCCTTTGA
gi|36629 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36630 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36631 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36632 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36633 : AGCGAGCCTTCCCTTAGGCCCTTCAGGCCTTTGA
gi|36634 : AGCGAGCCTTCCCTCAGGCCTTTTAGGCCTTTGA
gi|36635 : AGTGAGCCTTCCCTCAGGCCTTTCAGGCCTT
Alignments
lowQualScore : 7777 3 1
lowQualScore : .... . .
lowQualScore : 1111 3 7
consensus : AAAGA----C-GACATGATGGGCAAAACTGTGAACGAGCGAGCCTTCCCTCAGGCCGTTCAGGCCTTTGA
Reference ( family-763 ) : AAAGA----C-GACATGATGGGCAAAACTGTGAACGAGCGAGCCTTCCCTCAGGCCGTTCAGGCCTTTGA
gi|36613 : AAACA----C-GACATGATGGGCAAAACTGTGAACGAGTGAGCCTTTCCTCAGGCCGTTCAGGCCTTTGA
gi|36614 : AAAGA----C-GACATGGTGGGCAAAACTGTGAACGTGTGAGCCATCTCTCAGGCCGTTCGGGCCTTTGA
gi|36615 : AAAGA----C-GACTTGATGGGCAAAACTGTGAACATGTGAGCCTTCCCACAGGCCATTCAGGCCTTTGA
gi|36616 : AAAGA----C-AACATGATGGGCAAATCTTTGAATGAGTGAGCCTTCCCTTAGGCCGTTTGGGCCTTTGA
gi|36617 : AAAGA----AAGACATGGTGAGCAAAACTGTGAACAAGCGAGCTTTCCCTCGGGCCGTTCAGGCCCCTG
gi|36618 : AAAGA----C-GACATGCTGGTTAAAACCGTGAACGAGACAGCCTTCCCTCAGGCCGTTTAGCCCTTTGA
gi|36619 : AAAGA----C-GACATGATGGGCAAGACTG--AATGAGAGAGCCTTACCTCAGGCCATTCAAGCCTTTGA
gi|36620 : AAAGC----C-GACATGACGGGCAAAACTGAGAACAAGCGAGCTTTCCATCAAGTCGTTCAGGCCTTTG
gi|36621 : AAAGA----C-GACATGATGGGCAAAACTGTATCCGGGTGAGCCTTCCCTCAGG
gi|36622 : AAAGA----C-GCCATTCCGGTCAAAACCGTGAACGAGAGAGCCTTCCC-CAGTCCGTTTAGCCCTTTGA
gi|36623 : AAATA----T-GACATGACGGGCATAATTGCGAACAAGCAAGCCTTCCCTCGGGTCGTTAAAACCTTTGA
gi|36624 : AAAGAACGTC-GACATGATGGACTAAACTGTGAACGAGTGAGTC------CAGGCCGATCAGGCCTTCGA
gi|36625 : TGAGCAAAACTGTGAACGAGTGAGCCTTCCTTTAGACCGTTCGGACCTTTGA
gi|36626 : gAAAACTGTGAACAAGCGAGCCTTTCCTCAGGCCGTTCAGGTCTTTGA
gi|36627 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36628 : AGCGAGCCTTCCCTCAGGCCTTTCAGGCCTTTGA
gi|36629 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36630 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36631 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36632 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36633 : AGCGAGCCTTCCCTTAGGCCCTTCAGGCCTTTGA
gi|36634 : AGCGAGCCTTCCCTCAGGCCTTTTAGGCCTTTGA
gi|36635 : AGTGAGCCTTCCCTCAGGCCTTTCAGGCCTT
blockSeqs : ACGT A G
blockSeqs : . . A
blockSeqs : . . G
blockSeqs : . . G
blockSeqs : . . G
blockSeqs : . . A
blockSeqs : . . G
blockSeqs : . . G
blockSeqs : . . G
blockSeqs : . . G
blockSeqs : . . G
blockSeqs : G
blockSeqs : C
blockSeqs : T
blockSeqs : C
blockSeqs : C
blockSeqs : C
blockSeqs : C
blockSeqs : C
blockSeqs : T
blockSeqs : T
blockSeqCons :
originalCons : AAAGA----C-GACATGATGGGCAAAACTGTGAACGAGCGAGCCTTCCCTCAGGCCGTTCAGGCCTTTGA
finalCons : AAAGA----C-GACATGATGGGCAAAACTGTGAACGAGCGAGCCTTCCCTCAGGCCGTTCAGGCCTTTGA
Alignments
lowQualScore : 7777 3 1
lowQualScore : .... . .
lowQualScore : 1111 3 7
consensus : AAAGA----C-GACATGATGGGCAAAACTGTGAACGAGCGAGCCTTCCCTCAGGCCGTTCAGGCCTTTGA
Reference ( family-763 ) : AAAGA----C-GACATGATGGGCAAAACTGTGAACGAGCGAGCCTTCCCTCAGGCCGTTCAGGCCTTTGA
gi|36613 : AAACA----C-GACATGATGGGCAAAACTGTGAACGAGTGAGCCTTTCCTCAGGCCGTTCAGGCCTTTGA
gi|36614 : AAAGA----C-GACATGGTGGGCAAAACTGTGAACGTGTGAGCCATCTCTCAGGCCGTTCGGGCCTTTGA
gi|36615 : AAAGA----C-GACTTGATGGGCAAAACTGTGAACATGTGAGCCTTCCCACAGGCCATTCAGGCCTTTGA
gi|36616 : AAAGA----C-AACATGATGGGCAAATCTTTGAATGAGTGAGCCTTCCCTTAGGCCGTTTGGGCCTTTGA
gi|36617 : AAAGA----AAGACATGGTGAGCAAAACTGTGAACAAGCGAGCTTTCCCTCGGGCCGTTCAGGCCCCTG
gi|36618 : AAAGA----C-GACATGCTGGTTAAAACCGTGAACGAGACAGCCTTCCCTCAGGCCGTTTAGCCCTTTGA
gi|36619 : AAAGA----C-GACATGATGGGCAAGACTG--AATGAGAGAGCCTTACCTCAGGCCATTCAAGCCTTTGA
gi|36620 : AAAGC----C-GACATGACGGGCAAAACTGAGAACAAGCGAGCTTTCCATCAAGTCGTTCAGGCCTTTG
gi|36621 : AAAGA----C-GACATGATGGGCAAAACTGTATCCGGGTGAGCCTTCCCTCAGG
gi|36622 : AAAGA----C-GCCATTCCGGTCAAAACCGTGAACGAGAGAGCCTTCCC-CAGTCCGTTTAGCCCTTTGA
gi|36623 : AAATA----T-GACATGACGGGCATAATTGCGAACAAGCAAGCCTTCCCTCGGGTCGTTAAAACCTTTGA
gi|36624 : AAAGAACGTC-GACATGATGGACTAAACTGTGAACGAGTGAGTC------CAGGCCGATCAGGCCTTCGA
gi|36625 : TGAGCAAAACTGTGAACGAGTGAGCCTTCCTTTAGACCGTTCGGACCTTTGA
gi|36626 : gAAAACTGTGAACAAGCGAGCCTTTCCTCAGGCCGTTCAGGTCTTTGA
gi|36627 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36628 : AGCGAGCCTTCCCTCAGGCCTTTCAGGCCTTTGA
gi|36629 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36630 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36631 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36632 : AGCGAGCCTTCCCTCAGGCCCTTCAGGCCTTTGA
gi|36633 : AGCGAGCCTTCCCTTAGGCCCTTCAGGCCTTTGA
gi|36634 : AGCGAGCCTTCCCTCAGGCCTTTTAGGCCTTTGA
gi|36635 : AGTGAGCCTTCCCTCAGGCCTTTCAGGCCTT