lowQualScore : 6666 1 111 1 1
lowQualScore : 6 3 9999 3 77 2 1 444 22 4 5 2 2 2 4 5 4 4 0 2 33 2 33 3
lowQualScore : . . .... . .. . . ... .. . . . . . . . . . . . .. . .. .
lowQualScore : 0 8 2222 8 00 0 7 666 66 5 4 1 1 0 9 0 2 8 8 2 22 2 22 3
consensus : ATACTGTAGAATCTGGTAAATAAGCGCATA----CTTG-AATATAAGCGTATACCAAAA-TTAAGCGCATACGGCCTTACCGTCATTCT-GTATGTGATAATAAGCGCAT-G-CT-AAACTCTTACCGTAATTTTGTGTTAGA-AATAG--GCGC--ATATCCCAATACAGG-TATACAAACAAAT
Reference ( gi|77289 ) : ATATTGTAGAATCTGGTAAATAAGCACATAGTTACTTG-AATATAAGTGTATACCAAAA-TAAAGCGCATACGGCCTTACCGTCGACCT-ATATGCGATTATAAGCGCAT-G-TT-AAACTCTTACCGTCATTTTGTGTAAGA-AATAG--GCAC--ATATCCCAATACAGG-TATACAAACAAAT
gi|77291 : ATACTGTAGAATCTGGTAAATAAGCGCATA----CTTG-AATGTAAGCGTATACCAAAAATTAAGCACAAATGATCTTACCATCAACCT-ATATGCGATAATGAGCCCAT-G-TT-AAACTCTTACCGTCATTTTGTATTAGA-AATAG--GCGC--ATATCCCAATACAGA-TATACAAACAAAT
gi|77292 : ATACTGTAGAACCTGGTAAATAAGCGCATA----CTTG-AATATAAGC-TACACCAAAA-TTAAGCG-ATACAACCTTCCCGTCAACCT-ATATGCGATAATAAGCGCAT-G-TT-GAACTCTTAACGTCATTTC------GA-AATAG--GCGC--ATATCCCAATACAGG-TATACAAA
gi|77290 : ATACTGTACAATCTGGTAAATAAGTGCATA----CTTG-AATATAAGCGTATACCAAAA-TTAAACACATATTGCCTTACTGTCAACCT-ATATGTGATAATATGTGCAG-G-CT-AAACTCTTACCGTCATTTTGAGTTAGA-AAATG--GTGC--ATATGCCAATACAGG-TATATAAACAAAT
gi|77287 : ATACTATAGTATCTGGTAAATAAGCGCATA----CTTG-AA-----GTGTATACCAAAA-TTAAGCACATACAGCCATACCATCATTCT-TTATGTGATAATAAGGGCAT-G-CT-AAAATCTTACCGTAATTTTGTGTTGAA-AATAG--GCAC--ATATCCAAATACAGG-CATACAAACAAA
gi|77297 : ATACTGTAGAATC----------GCA------TACTTG-ACTGTAAACATATATCAAAA-ATAAGCATATACGGTCCTACCATCAACTT-ATATGCGATAATAAGTGCAT-G-CT-TAACTCTTACCATCATTTTGTATTAGT-AATAG--GTGC--ATATCCCAATACAGGTTAT-CACATAAAT
gi|77294 : ATACTGTAAAATCTGGTAAATAAGC-CGTA----CTTG-AATATAAGCATATACAAAAA-TATAGCGCATACGGCCTTACTGTCATTCT-GTATGTGATAATAA---------TC-AAA-----GC-----TTTTGTGTTAAA-AATAG--GCGC--ATATCCCA--ACAGT-TATATAAAC
gi|77293 : ATACTATAGAATATGGTAAATAAATGCATA----CTTG-AATATAAGCGTACACCAAAA-GTAAGCACATAGGGCCTAACTGTCATTCT-GTATGTGATAATAAACGCAT-G-TCAAAACTCTTACCTTAACTTTGTCTTAAA-ATTAG--GTACTTACATTTTTATACA
gi|77295 : ATACTATAAAATCTGGTCAATTAGCACA-A---ACTTG-AATATGAATGTACACCAAAA-ATAAGTGCATAGGACCTTATCTCCATTCT-GTAAGTGATAATAAGCACAT-G-TC-AAATTCTAATCTTAATGTTGTCTTAAA-ATTTG--GTGC--ATATCCAAATACAGG-TATACGAA-AAAT
gi|77298 : ATACTGTAGAATCTGGTAAATAAGCGTATA----CTCG-AATATAAGAGTATACCAAAA-TTAAGCGCATACGGCCTTACCGTCAGCCTAATATTTAATGATAA
gi|77296 : ATACTTTTGAATCTGGTTAAAAGGCGCATA----CTTA-ATTATAAGAGTACA-----A-CAAAGCGCGTAAGGCCTTTCCGTCATTCT-GTATGTGATTATAAGCGCAT-G-CC-AAATCGTTACCGTAATTTTGTCTTAAA-ATTAG--GCGC--ATACC
gi|77288 : ATACTGTAGAATCTGGTAAATAAGCATATATGCACTTG-AAT
gi|77299 : ATACTGTATAATCTTGTAAATAAGCGCA----TACCTG-AA
gi|77300 : TACTGTAGAATCTGGTAAATAAGTGCATA----CTTG-AATATAAGGGTATACCAACA-TTAAGAGCATACAGCCTTGCAGTCATTTT-GTATGTGATAATAAGCGCAT-G-CT-AAAATCAGACCGTAATTTTGT-TAA-A-AATAA--ACAC--ATATCCCAATACA
gi|77301 : TACTATAGAATCTGGTAAATAAGCGCATA----CTTG-AACAT----------------TAA-GCGCATATGGCGTTACCATCATTCT-GTATGTGATAATAAGTGCAT-G-CT-AAAATCATACCATAATATTGTGTTAAA-CATAG--GCTC--ATATCCCAACACAGG-TACACAAACAAATt
gi|77302 : TACTGTAGAATCTGGTAAATAAGTGCATA----CTTG-AATATAAGGGTATACCAAAA-TTAAGAGCATACAGCCTTGCAGTCATTTT-GTATGTGAT--TAAGCGCAT-G-CT-AAAATCAGACCGTAAT
gi|77303 : ACTGTAAAATCTGGTAAATAAGCGTATA----CTTG-AATATAAGCAAATACAAAAA-TTAAGCGCATACAGCCTTACTGTCATTCT-G-A-GTGATAATAAGCGCAT-G-AT-ACTATCTGACCGTAATTTTGTGTTAAC-AACAG--ACAC--ATATCCTAATACATG-TATACAAACAAAT
gi|77304 : ACTGTAGAATCTGGTAAATATTTACATA----CTTG-AATATGAGCATATACCAAAA-TTAGGCACATATATCCTTACCAACATTCT-GTATGTGATTGTAAGTGCAT-GCTT-AAA-TCTTACTGTAATTTT
gi|77305 : AGCATCTTGTAAATATGCACATA----CTTG-AATTTAAGT--------------AAGCGCATAC--------CGTCATTTT-GTATGAGATAATAAGTGCAT-G-CT-AAAATCTTGCTGTAATTTTGTGTTAAA-A
gi|77306 : AATCTGGTAAATAAGCGCATA----CTTG-AATATAAGCATATACCAAAA-TTAACCGCATACGGCCTTACCGTCAACCT-ATTTGTAATAATAAGCGCAT-T-TT-AAGCTCTTCCCGTCATTTTGTGTTAGA-AATAG--GCGC--ATAACCCAACACATG-TATACCAATAAAT
gi|77308 : TACTTGGAATGTAAGCGTTTACCAAAA-TTAAGGGCATACGGCTTTACCACCAATCT-ATGTGTGATAATAAGC-CATTG-TT-AAACTCTTACCGCCATTTTGTATTAGA-AATAG--ACGC--ATATCCCAATACAGA-TATACAAGCAA
gi|77307 : ataaatgcaTACTTGGAATGTAAGCGTTTACCAAAA-TTAAGGACATACAGCTTTACTACCAATCT-ATGTGTGATAATAAGCTCAT-G-TT-AAACTCTTACCGCCATTTTGTATTAGA-AATAGTCACAC--ATATCCCAATACAGA-TATACAAACAA
gi|77309 : ataaatgcaAAA-TAA-GCGCATAGGGCATTACCGTCATTCT-GTATGGGATAATAAGCACAT-G-TC-AAATTCTTACCTTAATTTTGTCTTAAA-ATTAG--GTGC--ATA
gi|77305 : T-AAGCGCATACCGTCATTTTGTATGAGATAATAA--GTGC--AT
Alignments
lowQualScore : 3333 3333 3 1 1 2 1 2 555 1 1 0 33 3
lowQualScore : .... .... . . . . . . ... . . . .. .
lowQualScore : 9999 9999 6 1 9 0 9 0 555 1 8 5 22 1
consensus : ATACTGTAGAATCTGGTAAATAAGCGCAT----A----CTTG-AATATAAGCGTATACCAAAA-TTAAGCGCATACGGCCTTACCGTCANTCT-GTATGTGATAATAAGCGCAT-G---CTAAACTCTTACCGTAATTTTGTGTTAGAAATAG--GCGCATATCCCAATACAGGTATA-CAAACAAAT
Reference ( family-762 ) : ATACTGTAGAATCTGGTAAATAAGCGCAT----A----CTTG-AATATAAGCGTATACCAAAA-TTAAGCGCATACGGCCTTACCGTCATTCT-GTATGTGATAATAAGCGCAT-G---CTAAACTCTTACCGTAATTTTGTGTTAGAAATAG--GCGCATATCCCAATACAGGTATA-CAAACAAAT
gi|77287 : ATACTATAGTATCTGGTAAATAAGCGCAT----A----CTTG-AA-----GTGTATACCAAAA-TTAAGCACATACAGCCATACCATCATTCT-TTATGTGATAATAAGGGCAT-G---CTAAAATCTTACCGTAATTTTGTGTTGAAAATAG--GCACATATCCAAATACAGGCATA-CAAACAAA
gi|77288 : ATACTGTAGAATCTGGTAAATAAGCATATATGCA----CTTG-AAT
gi|77289 : ATATTGTAGAATCTGGTAAATAAGCACAT----AGTTACTTG-AATATAAGTGTATACCAAAA-TAAAGCGCATACGGCCTTACCGTCGACCT-ATATGCGATTATAAGCGCAT-G---TTAAACTCTTACCGTCATTTTGTGTAAGAAATAG--GCACATATCCCAATACAGGTATA-CAAACAAAT
gi|77290 : ATACTGTACAATCTGGTAAATAAGTGCAT----A----CTTG-AATATAAGCGTATACCAAAA-TTAAACACATATTGCCTTACTGTCAACCT-ATATGTGATAATATGTGCAG-G---CTAAACTCTTACCGTCATTTTGAGTTAGAAAATG--GTGCATATGCCAATACAGGTATA-TAAACAAAT
gi|77291 : ATACTGTAGAATCTGGTAAATAAGCGCAT----A----CTTG-AATGTAAGCGTATACCAAAAATTAAGCACAAATGATCTTACCATCAACCT-ATATGCGATAATGAGCCCAT-G---TTAAACTCTTACCGTCATTTTGTATTAGAAATAG--GCGCATATCCCAATACAGATATA-CAAACAAAT
gi|77292 : ATACTGTAGAACCTGGTAAATAAGCGCAT----A----CTTG-AATATAAGC-TACACCAAAA-TTAAGCG-ATACAACCTTCCCGTCAACCT-ATATGCGATAATAAGCGCAT-G---TTGAACTCTTAACGTCATTTC------GAAATAG--GCGCATATCCCAATACAGGTATA-CAAA
gi|77293 : ATACTATAGAATATGGTAAATAAATGCAT----A----CTTG-AATATAAGCGTACACCAAAA-GTAAGCACATAGGGCCTAACTGTCATTCT-GTATGTGATAATAAACGCAT-GT--CAAAACTCTTACCTTAACTTTGTCTTAAAATTAG--G
gi|77294 : ATACTGTAAAATCTGGTAAATAAGC-CGT----A----CTTG-AATATAAGCATATACAAAAA-TATAGCGCATACGGCCTTACTGTCATTCT-GTATGTGATAATAATCA----------AAGC-----------TTTTGTGTTAAAAATAG--GCGCATATCCCA--ACAGTTATA-TAAACtacttacatttttataca
gi|77295 : ATACTATAAAATCTGGTCAATTAGCACAA----A----CTTG-AATATGAATGTACACCAAAA-ATAAGTGCATAGGACCTTATCTCCATTCT-GTAAGTGATAATAAGCACAT-G---TCAAATTCTAATCTTAATGTTGTCTTAAAATTTG--GTGCATATCCAAATACAGGTATA-CGAA-AAAT
gi|77296 : ATACTTTTGAATCTGGTTAAAAGGCGCAT----A----CTTA-ATTATAAGAGTACAACAAA------GCGCGTAAGGCCTTTCCGTCATTCT-GTATGTGATTATAAGCGCAT-G---CCAAATCGTTACCGTAATTTTGTCTTAAAATTAG--GCGCATACC
gi|77297 : ATACTGTAGAATC------------GCAT----A----CTTG-ACTGTAAACATATATCAAAA-ATAAGCATATACGGTCCTACCATCAACTT-ATATGCGATAATAAGTGCAT-G---CTTAACTCTTACCATCATTTTGTATTAGTAATAG--GTGCATATCCCAATACAGGT-TATCACATAAAT
gi|77298 : ATACTGTAGAATCTGGTAAATAAGCGTAT----A----CTCG-AATATAAGAGTATACCAAAA-TTAAGCGCATACGGCCTTACCGTCAGCCTAATATTTAATGATAA
gi|77299 : ATACTGTATAATCTTGTAAATAAGCGCAT----A----CCTG-AA
gi|77300 : TACTGTAGAATCTGGTAAATAAGTGCAT----A----CTTG-AATATAAGGGTATACCAACA-TTAAGAGCATACAGCCTTGCAGTCATTTT-GTATGTGATAATAAGCGCAT-G---CTAAAATCAGACCGTAATTT--TGTTAAAAATAA--ACACATATCCCAATACA
gi|77301 : TACTATAGAATCTGGTAAATAAGCGCAT----A----CTTG-AACAT-----------------TAAGCGCATATGGCGTTACCATCATTCT-GTATGTGATAATAAGTGCAT-G---CTAAAATCATACCATAATATTGTGTTAAACATAG--GCTCATATCCCAACACAGGTACA-CAAACAAATt
gi|77302 : TACTGTAGAATCTGGTAAATAAGTGCAT----A----CTTG-AATATAAGGGTATACCAAAA-TTAAGAGCATACAGCCTTGCAGTCATTTT-GTATGTGAT--TAAGCGCAT-G---CTAAAATCAGACCGTAAT
gi|77303 : ACTGTAAAATCTGGTAAATAAGCGTAT----A----CTTG-AATATAAGCAAATACAAAAA-TTAAGCGCATACAGCCTTACTGTCATTCT-G-A-GTGATAATAAGCGCAT-GATACTA---TCTGACCGTAATTTTGTGTTAACAACAG--ACACATATCCTAATACATGTATA-CAAACAAAT
gi|77304 : ACTGTAGAATCTGGTAAATATTTACAT----A----CTTG-AATATGAGCATATACCAAAA-TTAGGCACATATATCCTTACCAACATTCT-GTATGTGATTGTAAGTGCAT-G---CTTAAATCTTACTGTAATTTT
gi|77305 : AGCATCTTGTAAATATGCACAT----A----CTTG-AATTTAAG--------------TAAGCGCATAC--------CGTCATTTT-GTATGAGATAATAAGTGCAT-G---CTAAAATCTTGCTGTAATTTTGTGTTAAAA
gi|77306 : AATCTGGTAAATAAGCGCAT----A----CTTG-AATATAAGCATATACCAAAA-TTAACCGCATACGGCCTTACCGTCAACCT-ATTTGTAATAATAAGCGCAT-T---TTAAGCTCTTCCCGTCATTTTGTGTTAGAAATAG--GCGCATAACCCAACACATGTATA-CCAATAAAT
gi|77307 : ATAAATGCAT----A----CTTGGAATGTAAGCGTTTACCAAAA-TTAAGGACATACAGCTTTACTACCAATCT-ATGTGTGATAATAAGCTCAT-G---TTAAACTCTTACCGCCATTTTGTATTAGAAATAGTCACACATATCCCAATACAGATATA-CAAACAA
gi|77308 : ATAAATGCAT----A----CTTGGAATGTAAGCGTTTACCAAAA-TTAAGGGCATACGGCTTTACCACCAATCT-ATGTGTGATAATAAGC-CATTG---TTAAACTCTTACCGCCATTTTGTATTAGAAATAG--ACGCATATCCCAATACAGATATA-CAAGCAA
gi|77309 : AAA-T-AAGCGCATAGGGCATTACCGTCATTCT-GTATGGGATAATAAGCACAT-G---TCAAATTCTTACCTTAATTTTGTCTTAAAATTAG--GTGCATA
Alignments
lowQualScore : 3333 3333 3 1 1 1 1 2 555 1 1 0 33 3
lowQualScore : .... .... . . . . . . ... . . . .. .
lowQualScore : 9999 9999 6 1 9 0 9 0 555 1 8 5 22 1
consensus : ATACTGTAGAATCTGGTAAATAAGCGCAT----A----CTTG-AATATAAGCGTATACCAAAA-TTAAGCGCATACGGCCTTACCGTCANTCT-GTATGTGATAATAAGCGCAT-G---CTAAACTCTTACCGTAATTTTGTGTTAGAAATAG--GCGCATATCCCAATACAGGTATA-CAAACAAAT
Reference ( family-762 ) : ATACTGTAGAATCTGGTAAATAAGCGCAT----A----CTTG-AATATAAGCGTATACCAAAA-TTAAGCGCATACGGCCTTACCGTCANTCT-GTATGTGATAATAAGCGCAT-G---CTAAACTCTTACCGTAATTTTGTGTTAGAAATAG--GCGCATATCCCAATACAGGTATA-CAAACAAAT
gi|77287 : ATACTATAGTATCTGGTAAATAAGCGCAT----A----CTTG-AA-----GTGTATACCAAAA-TTAAGCACATACAGCCATACCATCATTCT-TTATGTGATAATAAGGGCAT-G---CTAAAATCTTACCGTAATTTTGTGTTGAAAATAG--GCACATATCCAAATACAGGCATA-CAAACAAA
gi|77288 : ATACTGTAGAATCTGGTAAATAAGCATATATGCA----CTTG-AAT
gi|77289 : ATATTGTAGAATCTGGTAAATAAGCACAT----AGTTACTTG-AATATAAGTGTATACCAAAA-TAAAGCGCATACGGCCTTACCGTCGACCT-ATATGCGATTATAAGCGCAT-G---TTAAACTCTTACCGTCATTTTGTGTAAGAAATAG--GCACATATCCCAATACAGGTATA-CAAACAAAT
gi|77290 : ATACTGTACAATCTGGTAAATAAGTGCAT----A----CTTG-AATATAAGCGTATACCAAAA-TTAAACACATATTGCCTTACTGTCAACCT-ATATGTGATAATATGTGCAG-G---CTAAACTCTTACCGTCATTTTGAGTTAGAAAATG--GTGCATATGCCAATACAGGTATA-TAAACAAAT
gi|77291 : ATACTGTAGAATCTGGTAAATAAGCGCAT----A----CTTG-AATGTAAGCGTATACCAAAAATTAAGCACAAATGATCTTACCATCAACCT-ATATGCGATAATGAGCCCAT-G---TTAAACTCTTACCGTCATTTTGTATTAGAAATAG--GCGCATATCCCAATACAGATATA-CAAACAAAT
gi|77292 : ATACTGTAGAACCTGGTAAATAAGCGCAT----A----CTTG-AATATAAGC-TACACCAAAA-TTAAGCG-ATACAACCTTCCCGTCAACCT-ATATGCGATAATAAGCGCAT-G---TTGAACTCTTAACGTCATTTC------GAAATAG--GCGCATATCCCAATACAGGTATA-CAAA
gi|77293 : ATACTATAGAATATGGTAAATAAATGCAT----A----CTTG-AATATAAGCGTACACCAAAA-GTAAGCACATAGGGCCTAACTGTCATTCT-GTATGTGATAATAAACGCAT-GT--CAAAACTCTTACCTTAACTTTGTCTTAAAATTAG--G
gi|77294 : ATACTGTAAAATCTGGTAAATAAGC-CGT----A----CTTG-AATATAAGCATATACAAAAA-TATAGCGCATACGGCCTTACTGTCATTCT-GTATGTGATAATAATCA----------AAGC-----------TTTTGTGTTAAAAATAG--GCGCATATCCCA--ACAGTTATA-TAAACtacttacatttttataca
gi|77295 : ATACTATAAAATCTGGTCAATTAGCACAA----A----CTTG-AATATGAATGTACACCAAAA-ATAAGTGCATAGGACCTTATCTCCATTCT-GTAAGTGATAATAAGCACAT-G---TCAAATTCTAATCTTAATGTTGTCTTAAAATTTG--GTGCATATCCAAATACAGGTATA-CGAA-AAAT
gi|77296 : ATACTTTTGAATCTGGTTAAAAGGCGCAT----A----CTTA-ATTATAAGAGTACAACAAA------GCGCGTAAGGCCTTTCCGTCATTCT-GTATGTGATTATAAGCGCAT-G---CCAAATCGTTACCGTAATTTTGTCTTAAAATTAG--GCGCATACC
gi|77297 : ATACTGTAGAATC------------GCAT----A----CTTG-ACTGTAAACATATATCAAAA-ATAAGCATATACGGTCCTACCATCAACTT-ATATGCGATAATAAGTGCAT-G---CTTAACTCTTACCATCATTTTGTATTAGTAATAG--GTGCATATCCCAATACAGGT-TATCACATAAAT
gi|77298 : ATACTGTAGAATCTGGTAAATAAGCGTAT----A----CTCG-AATATAAGAGTATACCAAAA-TTAAGCGCATACGGCCTTACCGTCAGCCTAATATTTAATGATAA
gi|77299 : ATACTGTATAATCTTGTAAATAAGCGCAT----A----CCTG-AA
gi|77300 : TACTGTAGAATCTGGTAAATAAGTGCAT----A----CTTG-AATATAAGGGTATACCAACA-TTAAGAGCATACAGCCTTGCAGTCATTTT-GTATGTGATAATAAGCGCAT-G---CTAAAATCAGACCGTAATTT--TGTTAAAAATAA--ACACATATCCCAATACA
gi|77301 : TACTATAGAATCTGGTAAATAAGCGCAT----A----CTTG-AACAT-----------------TAAGCGCATATGGCGTTACCATCATTCT-GTATGTGATAATAAGTGCAT-G---CTAAAATCATACCATAATATTGTGTTAAACATAG--GCTCATATCCCAACACAGGTACA-CAAACAAATt
gi|77302 : TACTGTAGAATCTGGTAAATAAGTGCAT----A----CTTG-AATATAAGGGTATACCAAAA-TTAAGAGCATACAGCCTTGCAGTCATTTT-GTATGTGAT--TAAGCGCAT-G---CTAAAATCAGACCGTAAT
gi|77303 : ACTGTAAAATCTGGTAAATAAGCGTAT----A----CTTG-AATATAAGCAAATACAAAAA-TTAAGCGCATACAGCCTTACTGTCATTCT-G-A-GTGATAATAAGCGCAT-GATACTA---TCTGACCGTAATTTTGTGTTAACAACAG--ACACATATCCTAATACATGTATA-CAAACAAAT
gi|77304 : ACTGTAGAATCTGGTAAATATTTACAT----A----CTTG-AATATGAGCATATACCAAAA-TTAGGCACATATATCCTTACCAACATTCT-GTATGTGATTGTAAGTGCAT-G---CTTAAATCTTACTGTAATTTT
gi|77305 : AGCATCTTGTAAATATGCACAT----A----CTTG-AATTTAAG--------------TAAGCGCATAC--------CGTCATTTT-GTATGAGATAATAAGTGCAT-G---CTAAAATCTTGCTGTAATTTTGTGTTAAAA
gi|77306 : AATCTGGTAAATAAGCGCAT----A----CTTG-AATATAAGCATATACCAAAA-TTAACCGCATACGGCCTTACCGTCAACCT-ATTTGTAATAATAAGCGCAT-T---TTAAGCTCTTCCCGTCATTTTGTGTTAGAAATAG--GCGCATAACCCAACACATGTATA-CCAATAAAT
gi|77307 : ATAAATGCAT----A----CTTGGAATGTAAGCGTTTACCAAAA-TTAAGGACATACAGCTTTACTACCAATCT-ATGTGTGATAATAAGCTCAT-G---TTAAACTCTTACCGCCATTTTGTATTAGAAATAGTCACACATATCCCAATACAGATATA-CAAACAA
gi|77308 : ATAAATGCAT----A----CTTGGAATGTAAGCGTTTACCAAAA-TTAAGGGCATACGGCTTTACCACCAATCT-ATGTGTGATAATAAGC-CATTG---TTAAACTCTTACCGCCATTTTGTATTAGAAATAG--ACGCATATCCCAATACAGATATA-CAAGCAA
gi|77309 : AAA-T-AAGCGCATAGGGCATTACCGTCATTCT-GTATGGGATAATAAGCACAT-G---TCAAATTCTTACCTTAATTTTGTCTTAAAATTAG--GTGCATA
blockSeqs : ATGC GTTA G T A A A T ATA C C TC T
blockSeqs : . . G C . A . . T C C . .
blockSeqs : . . . C . A . . . C C . .
blockSeqs : . . . C . A . . . C C . .
blockSeqs : . . . C . T . . . C A . .
blockSeqs : . . . C . T . . . C A . .
blockSeqs : . . . T . T . . . T A . .
blockSeqs : . . . A . T . . . T C . .
blockSeqs : . . . C . A . . . C A . .
blockSeqs : . . . A . G . . . A A . .
blockSeqs : . . . G . T . . . A A . .
blockSeqs : . . . G . T . . . A A . .
blockSeqs : . . . C . T . . . A A .
blockSeqs : . . . C . T . . . A A .
blockSeqs : . . . C . T . . . C C .
blockSeqs : . . . C . T . . . C C .
blockSeqs : . . . C . A . . . C C
blockSeqs : . . . . . A . . . T A
blockSeqs : . . . . . A . . . . .
blockSeqs : . . . . T .
blockSeqs : . . .
blockSeqCons :
originalCons : ATACTGTAGAATCTGGTAAATAAGCGCAT----A----CTTG-AATATAAGCGTATACCAAAA-TTAAGCGCATACGGCCTTACCGTCANTCT-GTATGTGATAATAAGCGCAT-G---CTAAACTCTTACCGTAATTTTGTGTTAGAAATAG--GCGCATATCCCAATACAGGTATA-CAAACAAAT
finalCons : ATACTGTAGAATCTGGTAAATAAGCGCAT----A----CTTG-AATATAAGCGTATACCAAAA-TTAAGCGCATACGGCCTTACCGTCANTCT-GTATGTGATAATAAGCGCAT-G---CTAAACTCTTACCGTAATTTTGTGTTAGAAATAG--GCGCATATCCCAATACAGGTATA-CAAACAAAT
Alignments
lowQualScore : 3333 3333 3 1 1 1 1 2 555 1 1 0 33 3
lowQualScore : .... .... . . . . . . ... . . . .. .
lowQualScore : 9999 9999 6 1 9 0 9 0 555 1 8 5 22 1
consensus : ATACTGTAGAATCTGGTAAATAAGCGCAT----A----CTTG-AATATAAGCGTATACCAAAA-TTAAGCGCATACGGCCTTACCGTCANTCT-GTATGTGATAATAAGCGCAT-G---CTAAACTCTTACCGTAATTTTGTGTTAGAAATAG--GCGCATATCCCAATACAGGTATA-CAAACAAAT
Reference ( family-762 ) : ATACTGTAGAATCTGGTAAATAAGCGCAT----A----CTTG-AATATAAGCGTATACCAAAA-TTAAGCGCATACGGCCTTACCGTCANTCT-GTATGTGATAATAAGCGCAT-G---CTAAACTCTTACCGTAATTTTGTGTTAGAAATAG--GCGCATATCCCAATACAGGTATA-CAAACAAAT
gi|77287 : ATACTATAGTATCTGGTAAATAAGCGCAT----A----CTTG-AA-----GTGTATACCAAAA-TTAAGCACATACAGCCATACCATCATTCT-TTATGTGATAATAAGGGCAT-G---CTAAAATCTTACCGTAATTTTGTGTTGAAAATAG--GCACATATCCAAATACAGGCATA-CAAACAAA
gi|77288 : ATACTGTAGAATCTGGTAAATAAGCATATATGCA----CTTG-AAT
gi|77289 : ATATTGTAGAATCTGGTAAATAAGCACAT----AGTTACTTG-AATATAAGTGTATACCAAAA-TAAAGCGCATACGGCCTTACCGTCGACCT-ATATGCGATTATAAGCGCAT-G---TTAAACTCTTACCGTCATTTTGTGTAAGAAATAG--GCACATATCCCAATACAGGTATA-CAAACAAAT
gi|77290 : ATACTGTACAATCTGGTAAATAAGTGCAT----A----CTTG-AATATAAGCGTATACCAAAA-TTAAACACATATTGCCTTACTGTCAACCT-ATATGTGATAATATGTGCAG-G---CTAAACTCTTACCGTCATTTTGAGTTAGAAAATG--GTGCATATGCCAATACAGGTATA-TAAACAAAT
gi|77291 : ATACTGTAGAATCTGGTAAATAAGCGCAT----A----CTTG-AATGTAAGCGTATACCAAAAATTAAGCACAAATGATCTTACCATCAACCT-ATATGCGATAATGAGCCCAT-G---TTAAACTCTTACCGTCATTTTGTATTAGAAATAG--GCGCATATCCCAATACAGATATA-CAAACAAAT
gi|77292 : ATACTGTAGAACCTGGTAAATAAGCGCAT----A----CTTG-AATATAAGC-TACACCAAAA-TTAAGCG-ATACAACCTTCCCGTCAACCT-ATATGCGATAATAAGCGCAT-G---TTGAACTCTTAACGTCATTTC------GAAATAG--GCGCATATCCCAATACAGGTATA-CAAA
gi|77293 : ATACTATAGAATATGGTAAATAAATGCAT----A----CTTG-AATATAAGCGTACACCAAAA-GTAAGCACATAGGGCCTAACTGTCATTCT-GTATGTGATAATAAACGCAT-GT--CAAAACTCTTACCTTAACTTTGTCTTAAAATTAG--G
gi|77294 : ATACTGTAAAATCTGGTAAATAAGC-CGT----A----CTTG-AATATAAGCATATACAAAAA-TATAGCGCATACGGCCTTACTGTCATTCT-GTATGTGATAATAATCA----------AAGC-----------TTTTGTGTTAAAAATAG--GCGCATATCCCA--ACAGTTATA-TAAACtacttacatttttataca
gi|77295 : ATACTATAAAATCTGGTCAATTAGCACAA----A----CTTG-AATATGAATGTACACCAAAA-ATAAGTGCATAGGACCTTATCTCCATTCT-GTAAGTGATAATAAGCACAT-G---TCAAATTCTAATCTTAATGTTGTCTTAAAATTTG--GTGCATATCCAAATACAGGTATA-CGAA-AAAT
gi|77296 : ATACTTTTGAATCTGGTTAAAAGGCGCAT----A----CTTA-ATTATAAGAGTACAACAAA------GCGCGTAAGGCCTTTCCGTCATTCT-GTATGTGATTATAAGCGCAT-G---CCAAATCGTTACCGTAATTTTGTCTTAAAATTAG--GCGCATACC
gi|77297 : ATACTGTAGAATC------------GCAT----A----CTTG-ACTGTAAACATATATCAAAA-ATAAGCATATACGGTCCTACCATCAACTT-ATATGCGATAATAAGTGCAT-G---CTTAACTCTTACCATCATTTTGTATTAGTAATAG--GTGCATATCCCAATACAGGT-TATCACATAAAT
gi|77298 : ATACTGTAGAATCTGGTAAATAAGCGTAT----A----CTCG-AATATAAGAGTATACCAAAA-TTAAGCGCATACGGCCTTACCGTCAGCCTAATATTTAATGATAA
gi|77299 : ATACTGTATAATCTTGTAAATAAGCGCAT----A----CCTG-AA
gi|77300 : TACTGTAGAATCTGGTAAATAAGTGCAT----A----CTTG-AATATAAGGGTATACCAACA-TTAAGAGCATACAGCCTTGCAGTCATTTT-GTATGTGATAATAAGCGCAT-G---CTAAAATCAGACCGTAATTT--TGTTAAAAATAA--ACACATATCCCAATACA
gi|77301 : TACTATAGAATCTGGTAAATAAGCGCAT----A----CTTG-AACAT-----------------TAAGCGCATATGGCGTTACCATCATTCT-GTATGTGATAATAAGTGCAT-G---CTAAAATCATACCATAATATTGTGTTAAACATAG--GCTCATATCCCAACACAGGTACA-CAAACAAATt
gi|77302 : TACTGTAGAATCTGGTAAATAAGTGCAT----A----CTTG-AATATAAGGGTATACCAAAA-TTAAGAGCATACAGCCTTGCAGTCATTTT-GTATGTGAT--TAAGCGCAT-G---CTAAAATCAGACCGTAAT
gi|77303 : ACTGTAAAATCTGGTAAATAAGCGTAT----A----CTTG-AATATAAGCAAATACAAAAA-TTAAGCGCATACAGCCTTACTGTCATTCT-G-A-GTGATAATAAGCGCAT-GATACTA---TCTGACCGTAATTTTGTGTTAACAACAG--ACACATATCCTAATACATGTATA-CAAACAAAT
gi|77304 : ACTGTAGAATCTGGTAAATATTTACAT----A----CTTG-AATATGAGCATATACCAAAA-TTAGGCACATATATCCTTACCAACATTCT-GTATGTGATTGTAAGTGCAT-G---CTTAAATCTTACTGTAATTTT
gi|77305 : AGCATCTTGTAAATATGCACAT----A----CTTG-AATTTAAG--------------TAAGCGCATAC--------CGTCATTTT-GTATGAGATAATAAGTGCAT-G---CTAAAATCTTGCTGTAATTTTGTGTTAAAA
gi|77306 : AATCTGGTAAATAAGCGCAT----A----CTTG-AATATAAGCATATACCAAAA-TTAACCGCATACGGCCTTACCGTCAACCT-ATTTGTAATAATAAGCGCAT-T---TTAAGCTCTTCCCGTCATTTTGTGTTAGAAATAG--GCGCATAACCCAACACATGTATA-CCAATAAAT
gi|77307 : ATAAATGCAT----A----CTTGGAATGTAAGCGTTTACCAAAA-TTAAGGACATACAGCTTTACTACCAATCT-ATGTGTGATAATAAGCTCAT-G---TTAAACTCTTACCGCCATTTTGTATTAGAAATAGTCACACATATCCCAATACAGATATA-CAAACAA
gi|77308 : ATAAATGCAT----A----CTTGGAATGTAAGCGTTTACCAAAA-TTAAGGGCATACGGCTTTACCACCAATCT-ATGTGTGATAATAAGC-CATTG---TTAAACTCTTACCGCCATTTTGTATTAGAAATAG--ACGCATATCCCAATACAGATATA-CAAGCAA
gi|77309 : AAA-T-AAGCGCATAGGGCATTACCGTCATTCT-GTATGGGATAATAAGCACAT-G---TCAAATTCTTACCTTAATTTTGTCTTAAAATTAG--GTGCATA