lowQualScore : 1 111111111111 1 11
lowQualScore : 4444 3 1 4444 2 5 2 777777 33 5 5 111111111111 22 22 2 5 0 2 1 5 33 5 2 2
lowQualScore : .... . . .... . . . ...... .. . . ............ .. .. . . . . . . .. . . .
lowQualScore : 0000 4 1 0000 7 7 0 555555 55 6 4 222222222222 99 99 0 1 1 1 9 2 33 1 2 4
consensus : TGTCCAGTATACCA----TCTTCGGATTTCGTTAACATG----TTCACTCAATGGTGTAAATGGTGGCAAA-AA-----CGTATAGACCACGGAGGAGAGTATTTTGAGAAGGAGTGACTCAGTAA----AT-----TTGAT--ACA--AAAGCACC-TGTTTANAATATTGACGTCG-GTTTTTGNTGAATACAACGTCATCATTTTGCCCCGACATA-TCTAACTGCTATGCTTTGAATAGCGC-CTT-ATTT
Reference ( gi|33222 ) : TGTCCAGTATACCA----TCTTCAGATTTCGTTAACATG----TTCACTCAATAGTGTAAATGGTGGCAAA-AA-----CGTATAGACCACGGAGGAGAGTATTTTGAGAAGAAGCGACACAGTAA----AT-----TTGAT--ACA--AAAGCACC-TATTTAGAATATTGACGTCG-GTTTTTGTTGAATACAACGTTATCATTTTGCCCCGACATA-ACTAACTGCCATGCTTTGAATAGCGC-CTT-ATTT
gi|33224 : TGTCCAGTATACCA----TCTTCTGATTTTGTTAACATG----TTCACTGAATGGTGTAAATGGTGGCAAA-AA-----CGTATAGCCCATGGAGGAGAGTATTTTGAGAA-AAGTGACTCAGTAA----AT-----TTGAT--GCA--AAAGCACC-TGTTAAAAATATTGACGTCG-TTTTTTGTTGAAT---ACGTCATCATTTTGCCCCGACATA-TCTAACTGCTATGCTTTGAATAGTGC-CTT-ATTT
gi|33225 : TGTTCAGTATACCA----TCTTCGAATTTCATAAACATG----TTCACTCAGTGGTGTAAATGGTAGCAAA-AA-----CGTATAGACCACGGAGGACAGTATTTTGAGAAGAAGTGACTCAGAAA----AT-----TTGAT--ACA--AAAGCACC-TATTTTTAATATTGACATCT-ATTTTTGTTGAATACAACGTCATCGTTTTGCCCCGACATA-TCTAACTGCTATGTTTTGAATAGTGC-CTT-TTTT
gi|33226 : TGTCCAGTATACCA----TCTTCTGATTTTGTTAACATG----TTCACTGAATGGTGTAAATGATGGCAAATAA-----AGTATAGACCACAGAGGAGAGTATTTTGAGAAGAAGTAACTCAGTAA----TT-----TTGAT--ACA--AAAGCACC-TGTTTAAAATATTGACGTCA-TTTTTTGTTGTATACAACGTCATCATTTTGCCCAGACATA-TCTAACTGCTATGCTTTGAAAAGTGC-CTT-ATTT
gi|33227 : TGTCCAGTATACCA----TCTTGAGATTTCATTAACATA----TTCACTCAATGGTGTAAATGGTGGCAAA-AA-----CATACATACCATGAATGCGAGTATTTTGAGAATGAGTGACTCAGTAA----AT-----TTGAT--ACA--AAGGCACC-TATTTAAAATATTGACGTC--GTTTTTTTTGAAT---ACGTCATCATTTTGCCCCAACATA-ACTAACTGCTATGCTTTGACTAGCGC-CTT-ATTT
gi|33229 : TGTCAAGTATAC-A----TCTTGAGATTTTGTTAACACA----TTTGTTCAATGGTGTAAATGGTGCCAAA-AA-----CGTAAAGACCATGGATGAGGGTATTTCGAAAAGAAGTGACTCAGTAA----AT-----TTGAT--ACA--AAAGCACC-TGTTTAAAATATTGACGTCG-GTTTTTGTTGAATACAACGTCATCATTTTGCCCTGACATA-TCTAACTGCTCTGCTTTGAACAGTGC-CTTAATTT
gi|33228 : TGTCCAGTATACCA----TCTTTGGATTTAGTTAACATG----TTTACTGAATGGTGTAAATGGTGGCAAA-AA-----TATATAGATCATGGAGGAGAGTATTTTGAGAAGGAGTGACTCAGTAA----AT-----TTTAT--ACA--AAAGCACC-CATTT-GAATAATGACGTCATTTTTTTGTTGAATATAACCTCATCAGTTTGCCCCCACATA-TCTAACTGCTATACTTTGAATAGTGC-CTT-ATTT
gi|33220 : TGTCCAGCATACCA----TCTTCGGATTTCGTTGACATG----TACACTAAATGGTGTAAACGGTGGCAAA-AA-----TGTATAGACAACGGAGGAGAGTATTTTGAGAAAGAGTGACTCGGTAATGGCA--------GAT--ACA--AAAGCACC-TGTTTTTTATACTGACGTTG-GTTTTTGGTGAATACAACGTCAACATTTTGCCCCGACATA-CATAACTGTTATGGTTTCAATAGCGC-CTT-ATTT
gi|33219 : TGTCCAGCATACCA----TCTTCGGATTTCGTTGACATG----TACACTAAATGGTGTAAACGGTGGCAAA-AA-----TGTATAGACAACGGAGGAGAGTATTTTGAGAAAGAGTGACTCGGTAATGGCA--------GAT--ACA--AAAGCACC-TGTTTTTTATACTGACGTTG-GTTTTTGGTGAATACAACGTCAACATTTTGCCCCGACATA-CATAACTGTTATGGTTTCAATAGCGC-CTT-ATTT
gi|33221 : TGTCCAGCATACCA----TCTTCGGATTTCGTTTACATG----TACACTAAATGGTGTAAACGTTGGCAAA-AA-----TGTATAGACCACGGAGGAGAGTATTTTAAGAAAGAGTGACTGGGTAA----AT-----GTGAT--ACG--AAAGCACCGTTTTTAT-TTACTGACGTCG-GGTTTTGGTGAATACAACGTCAACATTTTGCCCCGACATA-CATAACTGTTATGGTTTCAATAGCGT-CTT-ATTT
gi|33231 : TGTCCAGTATACCA----TCTTCTGATTTTGTTAACTTG----TTCACTGAATGATGTAAATGATGGCAAA-AA-----CATATAGACCATGGAGGAGA-----------------------GTAA----AT-----TTGATACACA--AAAGCACC-TGTTTAAAATATTGACGTCA---TTTTGTTGAATACAACGTCATCATTTTGCCCCGCTATA-TCTAACTGTTATGCTTTGAATAGTGC-CTT-ATTT
gi|33230 : TGTCCAATATACCA----TCTTCTGATTTCGTTGACATG----TTTACTCAATGGTGTAAATGGTGACAAA-AAAGTATAGTATAGATCATGGAGGAGAGTATTTTGAGAAGAAGTGACTCAGTAA----ATGAAAACAGAC--ATG--AAAGCACC-TGTTTATAATATTGACATTG-GTTTTTGGTGAATATAATGTCGTCATTTTGCC----CGTA-TTTAACAGTTATGCTTTGAATAGCTT-CTT-ATTT
gi|33223 : TGTCCAGCATACCA----TCTTCAGATTTCATTTATATG----TACACTAAATGGTGTAATTGGTGACAAC-AA-----TGT-TAGACCACGGAGGAGAGTATTTTGAGAAAGAGTGACTGAGTAA----AT-----GTGAT--ATG--AAAGCATC-TGTTTATTATACTGAATTTG-GTTTTTGGTGAATACAAAGTCAACATTTTGCCCCGAAATA-TATAACTGCTATGGTATGAATAGCGC-CTT-ATTT
gi|33232 : TGTCAAGTATACCA----TCTTTTGATTTCGTTAACATG----TTCACTCAATGGTGTAAATGGTGGCAAA-TA-----CGTAAAGATCTCGGGGGATAGTGTTTTGAGAAGGATTTACTCAGTAA----A-----------------------------TTTAAAATATTGACAACG-TTTTTGGTTGAAAACAACGTCATCCTTTTGCTCCGACATA-TCTAATTGCTATGCTTTGAATAGCGC-CTT-AT
gi|33234 : TGTCCAGAATACCA----TCTTCGGAT----------------TTCACTCAATGGTGTAAATGGTGGCAAA-AT-----CATACTAACCATGGAGGA------TTTGAGAAGGAGTGACTCAGTAT----TT-----TTGAT--ACA--AAAGCACC-TTTTTGAAATATTGAAATTG-GTTTTTGTTG------ACGTCATCATTTTGCCCTGATATA-ACAAACTGCTATGCTTTGAATAGCAC-CTT-ATTT
gi|33233 : TATCAAGCATACCA----TCTTCAGATCTCGTTGACATA----TTCACTGAATGGTGAAAACAATGGCAAA-AAA----TGTACAGACCGCGGATGAGAGTATTTTGAGAAGAAATGGATCAGCAA----AT-----GTGAT--ATG--AAAGCACC-TGTTTATTACACTGGTGTCG-G-TTTTGGCGAATACAACGTCGTCAATTTG-CCCGACATA-TCTA
gi|33235 : TGTCCAGTATACCA----TCTTCAGATTTAGTTTACATG----TTCACTCAATGGTTTAAACGGTGGCAAA-AA-----TGTATAGATCATGGAGGAGAGTAGTTTGAGAAGGAGTGACTCATTCA----AT-----GTGAT--ATA--AAAGCACT-TGTTCATAATATTG
gi|33236 : TGTCCAGTATACCA----TCTTGAGATTTCGTTAACATA----T------AA----ATAAGTTATGGCAAA-AG-----TCTACGGAC
gi|33237 : TGTCCAGTATACCA----TCTTCTGATTTTATTAATA-G----TAAACTTAATAG
gi|33238 : TCCAGTATACCA----TCTTCGGATTTCGTTTACATGCATGTTCACTCAATGTTGTAAATAGTGGTAAA-TA-----TGTATAGACCATGGAAGAGAGTATTTCTAGAAGGGGTGACACAGTAA----A-------TGAT--ATATGAAAGCATC-TTTTTATAATATTGACGTTG-GTTCTTGGTGAATACTATGTCGTCATTTTGTCCTGACATA-TGTAACTGTTATGCTTTGAATAGCGC-CT
gi|33239 : TCCAGCGTACCAGCCATCTTCAGATTTCATTCACATG----TTCACTCAATGGTGTAAATGGTGAC-AA-AA-----TGTATAGAACAAGGAAGAGAGTATTTTGAGA-----C------GT-G----AT-----TTG---------AAAGTACC-TGTTTATATTACTGACATCG-G-TTTTGGTGAATACAATGTCTTCATTTTGCCCCGACATATAC-AACTGTCATGGTTTGAATAGCAC-CTT-GTCT
gi|33240 : AGTATAC-A----TCTTGAGATTTC-TTAACATA----TTCACTCAATGGTTTAAATGGTGGTAAA-AA-----CATATAGACCATGAATGAGAGTATTTTGAGAATGAGTGACTCAGTAA----AT-----TTGAT--ACA--AAAGCACC-TATCTAAAATATTGACGTCG-GTTTTTGTTGAAT---ACGTCATCATTTTGCCCCGACATA-ACCAACTGCTATGCTTTGACAAGCGC-CTT-ATTT
gi|33241 : C-TGTTTGTAATATCAACGTCA-ATTTTGGC--GATACAACGTTGTCATTTTGTCCCGACATA-TTTAACTGTTATTGTTTGAAAACCGCACCT-ATTT
Alignments
lowQualScore : 3333 3 0 3333 2 1 66666 666666 8888 22 22 1 1 2 1 2 2
lowQualScore : .... . . .... . . ..... ...... .... .. .. . . . . . .
lowQualScore : 9999 4 6 9999 1 9 77777 444444 5555 88 88 9 0 0 0 1 2
consensus : TGTCCAGTATACCA----TCTTCGGATTTCGTTAACATG----TTCACTCAATGGTGTAAATGGTGGCAAA-AA-----CGTATAGACCACGGAGGAGAGTATTTTGAGAAGGAGTGACTCAGTAAAT-----TT----GAT--ACA--AAAGCACC-TGTTTANAATATTGACGTCG-GTTTTTGTTGAATACAACGTCATCATTTTGCCCCGACATATCTAACTGCTATGCTTTGAATAGCGC-CTT-ATTT
Reference ( family-759 ) : TGTCCAGTATACCA----TCTTCGGATTTCGTTAACATG----TTCACTCAATGGTGTAAATGGTGGCAAA-AA-----CGTATAGACCACGGAGGAGAGTATTTTGAGAAGGAGTGACTCAGTAAAT-----TT----GAT--ACA--AAAGCACC-TGTTTANAATATTGACGTCG-GTTTTTGNTGAATACAACGTCATCATTTTGCCCCGACATATCTAACTGCTATGCTTTGAATAGCGC-CTT-ATTT
gi|33219 : TGTCCAGCATACCA----TCTTCGGATTTCGTTGACATG----TACACTAAATGGTGTAAACGGTGGCAAA-AA-----TGTATAGACAACGGAGGAGAGTATTTTGAGAAAGAGTGACTCGGTAA--------TGGCAGAT--ACA--AAAGCACC-TGTTTTTTATACTGACGTTG-GTTTTTGGTGAATACAACGTCAACATTTTGCCCCGACATACATAACTGTTATGGTTTCAATAGCGC-CTT-ATTT
gi|33220 : TGTCCAGCATACCA----TCTTCGGATTTCGTTGACATG----TACACTAAATGGTGTAAACGGTGGCAAA-AA-----TGTATAGACAACGGAGGAGAGTATTTTGAGAAAGAGTGACTCGGTAA--------TGGCAGAT--ACA--AAAGCACC-TGTTTTTTATACTGACGTTG-GTTTTTGGTGAATACAACGTCAACATTTTGCCCCGACATACATAACTGTTATGGTTTCAATAGCGC-CTT-ATTT
gi|33221 : TGTCCAGCATACCA----TCTTCGGATTTCGTTTACATG----TACACTAAATGGTGTAAACGTTGGCAAA-AA-----TGTATAGACCACGGAGGAGAGTATTTTAAGAAAGAGTGACTGGGTAAAT-----GT----GAT--ACG--AAAGCACCGTTTTTAT-TTACTGACGTCG-GGTTTTGGTGAATACAACGTCAACATTTTGCCCCGACATACATAACTGTTATGGTTTCAATAGCGT-CTT-ATTT
gi|33222 : TGTCCAGTATACCA----TCTTCAGATTTCGTTAACATG----TTCACTCAATAGTGTAAATGGTGGCAAA-AA-----CGTATAGACCACGGAGGAGAGTATTTTGAGAAGAAGCGACACAGTAAAT-----TT----GAT--ACA--AAAGCACC-TATTTAGAATATTGACGTCG-GTTTTTGTTGAATACAACGTTATCATTTTGCCCCGACATAACTAACTGCCATGCTTTGAATAGCGC-CTT-ATTT
gi|33223 : TGTCCAGCATACCA----TCTTCAGATTTCATTTATATG----TACACTAAATGGTGTAATTGGTGACAAC-AA-----TGT-TAGACCACGGAGGAGAGTATTTTGAGAAAGAGTGACTGAGTAAAT-----GT----GAT--ATG--AAAGCATC-TGTTTATTATACTGAATTTG-GTTTTTGGTGAATACAAAGTCAACATTTTGCCCCGAAATATATAACTGCTATGGTATGAATAGCGC-CTT-ATTT
gi|33224 : TGTCCAGTATACCA----TCTTCTGATTTTGTTAACATG----TTCACTGAATGGTGTAAATGGTGGCAAA-AA-----CGTATAGCCCATGGAGGAGAGTATTTTGAGAA-AAGTGACTCAGTAAAT-----TT----GAT--GCA--AAAGCACC-TGTTAAAAATATTGACGTCG-TTTTTTGTTGAAT---ACGTCATCATTTTGCCCCGACATATCTAACTGCTATGCTTTGAATAGTGC-CTT-ATTT
gi|33225 : TGTTCAGTATACCA----TCTTCGAATTTCATAAACATG----TTCACTCAGTGGTGTAAATGGTAGCAAA-AA-----CGTATAGACCACGGAGGACAGTATTTTGAGAAGAAGTGACTCAGAAAAT-----TT----GAT--ACA--AAAGCACC-TATTTTTAATATTGACATCT-ATTTTTGTTGAATACAACGTCATCGTTTTGCCCCGACATATCTAACTGCTATGTTTTGAATAGTGC-CTT-TTTT
gi|33226 : TGTCCAGTATACCA----TCTTCTGATTTTGTTAACATG----TTCACTGAATGGTGTAAATGATGGCAAATAA-----AGTATAGACCACAGAGGAGAGTATTTTGAGAAGAAGTAACTCAGTAATT-----TT----GAT--ACA--AAAGCACC-TGTTTAAAATATTGACGTCA-TTTTTTGTTGTATACAACGTCATCATTTTGCCCAGACATATCTAACTGCTATGCTTTGAAAAGTGC-CTT-ATTT
gi|33227 : TGTCCAGTATACCA----TCTTGAGATTTCATTAACATA----TTCACTCAATGGTGTAAATGGTGGCAAA-AA-----CATACATACCATGAATGCGAGTATTTTGAGAATGAGTGACTCAGTAAAT-----TT----GAT--ACA--AAGGCACC-TATTTAAAATATTGACGTC--GTTTTTTTTGAAT---ACGTCATCATTTTGCCCCAACATAACTAACTGCTATGCTTTGACTAGCGC-CTT-ATTT
gi|33228 : TGTCCAGTATACCA----TCTTTGGATTTAGTTAACATG----TTTACTGAATGGTGTAAATGGTGGCAAA-AA-----TATATAGATCATGGAGGAGAGTATTTTGAGAAGGAGTGACTCAGTAAAT-----TT----TAT--ACA--AAAGCACC-CATTT-GAATAATGACGTCATTTTTTTGTTGAATATAACCTCATCAGTTTGCCCCCACATATCTAACTGCTATACTTTGAATAGTGC-CTT-ATTT
gi|33229 : TGTCAAGTATAC-A----TCTTGAGATTTTGTTAACACA----TTTGTTCAATGGTGTAAATGGTGCCAAA-AA-----CGTAAAGACCATGGATGAGGGTATTTCGAAAAGAAGTGACTCAGTAAAT-----TT----GAT--ACA--AAAGCACC-TGTTTAAAATATTGACGTCG-GTTTTTGTTGAATACAACGTCATCATTTTGCCCTGACATATCTAACTGCTCTGCTTTGAACAGTGC-CTTAATTT
gi|33230 : TGTCCAATATACCA----TCTTCTGATTTCGTTGACATG----TTTACTCAATGGTGTAAATGGTGACAAA-AAAGTATAGTATAGATCATGGAGGAGAGTATTTTGAGAAGAAGTGACTCAGTAAATGAAAACA----GAC--ATG--AAAGCACC-TGTTTATAATATTGACATTG-GTTTTTGGTGAATATAATGTCGTCATTTTGCC----CGTATTTAACAGTTATGCTTTGAATAGCTT-CTT-ATTT
gi|33231 : TGTCCAGTATACCA----TCTTCTGATTTTGTTAACTTG----TTCACTGAATGATGTAAATGATGGCAAA-AA-----CATATAGACCATGGAGGAGAGTA-----------------------AAT-----TT----GATACACA--AAAGCACC-TGTTTAAAATATTGACGTCA---TTTTGTTGAATACAACGTCATCATTTTGCCCCGCTATATCTAACTGTTATGCTTTGAATAGTGC-CTT-ATTT
gi|33232 : TGTCAAGTATACCA----TCTTTTGATTTCGTTAACATG----TTCACTCAATGGTGTAAATGGTGGCAAA-TA-----CGTAAAGATCTCGGGGGATAGTGTTTTGAGAAGGATTTACTCAGTAAA---------------------------------TTTAAAATATTGACAACG-TTTTTGGTTGAAAACAACGTCATCCTTTTGCTCCGACATATCTAATTGCTATGCTTTGAATAGCGC-CTT-AT
gi|33233 : TATCAAGCATACCA----TCTTCAGATCTCGTTGACATA----TTCACTGAATGGTGAAAACAATGGCAAA-AAA----TGTACAGACCGCGGATGAGAGTATTTTGAGAAGAAATGGATCAGCAAAT-----GT----GAT--ATG--AAAGCACC-TGTTTATTACACTGGTGTCG-G-TTTTGGCGAATACAACGTCGTCAATTTG-CCCGACATATCTA
gi|33234 : TGTCCAGAATACCA----TCTTCGGAT----------------TTCACTCAATGGTGTAAATGGTGGCAAA-AT-----CATACTAACCATGGAGGA------TTTGAGAAGGAGTGACTCAGTATTT-----TT----GAT--ACA--AAAGCACC-TTTTTGAAATATTGAAATTG-GTTTTTGTTG------ACGTCATCATTTTGCCCTGATATAACAAACTGCTATGCTTTGAATAGCAC-CTT-ATTT
gi|33235 : TGTCCAGTATACCA----TCTTCAGATTTAGTTTACATG----TTCACTCAATGGTTTAAACGGTGGCAAA-AA-----TGTATAGATCATGGAGGAGAGTAGTTTGAGAAGGAGTGACTCATTCAAT-----GT----GAT--ATA--AAAGCACT-TGTTCATAATATTG
gi|33236 : TGTCCAGTATACCA----TCTTGAGATTTCGTTAACATA----T------AA----ATAAGTTATGGCAAA-AG-----TCTACGGAC
gi|33237 : TGTCCAGTATACCA----TCTTCTGATTTTATTAATA-G----TAAACTTAATAG
gi|33238 : TCCAGTATACCA----TCTTCGGATTTCGTTTACATGCATGTTCACTCAATGTTGTAAATAGTGGTAAA-TA-----TGTATAGACCATGGAAGAGAGTATTTCTAGAAGGGGTGACACAGTAAA-------T----GAT--ATATGAAAGCATC-TTTTTATAATATTGACGTTG-GTTCTTGGTGAATACTATGTCGTCATTTTGTCCTGACATATGTAACTGTTATGCTTTGAATAGCGC-CT
gi|33239 : TCCAGCGTACCAGCCATCTTCAGATTTCATTCACATG----TTCACTCAATGGTGTAAATGGTGACAAA-A------TGTATAGAACAAGGAAGAGAGTATTTTGAGACG---TGA---------T-----TT----GA---------AAGTACC-TGTTTATATTACTGACATCG-GTTTT-GGTGAATACAATGTCTTCATTTTGCCCCGACATATACAACTGTCATGGTTTGAATAGCAC-CTT-GTCT
gi|33240 : AGTATAC-A----TCTTGAGATTTC-TTAACATA----TTCACTCAATGGTTTAAATGGTGGTAAA-AA-----CATATAGACCATGAATGAGAGTATTTTGAGAATGAGTGACTCAGTAAAT-----TT----GAT--ACA--AAAGCACC-TATCTAAAATATTGACGTCG-GTTTTTGTTGAAT---ACGTCATCATTTTGCCCCGACATAACCAACTGCTATGCTTTGACAAGCGC-CTT-ATTT
gi|33241 : C-TGTTTGTAATATCAACGTCA-ATTTT-GGCGA-TACAACGTTGTCATTTTGTCCCGACATATTTAACTGTTATTGTTTGAAAACCGCACCT-ATTT
Alignments
lowQualScore : 3333 3 0 3333 2 1 66666 666666 8888 22 22 1 1 2 0 2 2
lowQualScore : .... . . .... . . ..... ...... .... .. .. . . . . . .
lowQualScore : 9999 4 6 9999 1 9 77777 444444 5555 88 88 9 0 0 1 1 2
consensus : TGTCCAGTATACCA----TCTTCGGATTTCGTTAACATG----TTCACTCAATGGTGTAAATGGTGGCAAA-AA-----CGTATAGACCACGGAGGAGAGTATTTTGAGAAGGAGTGACTCAGTAAAT-----TT----GAT--ACA--AAAGCACC-TGTTTANAATATTGACGTCG-GTTTTTGTTGAATACAACGTCATCATTTTGCCCCGACATATCTAACTGCTATGCTTTGAATAGCGC-CTT-ATTT
Reference ( family-759 ) : TGTCCAGTATACCA----TCTTCGGATTTCGTTAACATG----TTCACTCAATGGTGTAAATGGTGGCAAA-AA-----CGTATAGACCACGGAGGAGAGTATTTTGAGAAGGAGTGACTCAGTAAAT-----TT----GAT--ACA--AAAGCACC-TGTTTANAATATTGACGTCG-GTTTTTGTTGAATACAACGTCATCATTTTGCCCCGACATATCTAACTGCTATGCTTTGAATAGCGC-CTT-ATTT
gi|33219 : TGTCCAGCATACCA----TCTTCGGATTTCGTTGACATG----TACACTAAATGGTGTAAACGGTGGCAAA-AA-----TGTATAGACAACGGAGGAGAGTATTTTGAGAAAGAGTGACTCGGTAA--------TGGCAGAT--ACA--AAAGCACC-TGTTTTTTATACTGACGTTG-GTTTTTGGTGAATACAACGTCAACATTTTGCCCCGACATACATAACTGTTATGGTTTCAATAGCGC-CTT-ATTT
gi|33220 : TGTCCAGCATACCA----TCTTCGGATTTCGTTGACATG----TACACTAAATGGTGTAAACGGTGGCAAA-AA-----TGTATAGACAACGGAGGAGAGTATTTTGAGAAAGAGTGACTCGGTAA--------TGGCAGAT--ACA--AAAGCACC-TGTTTTTTATACTGACGTTG-GTTTTTGGTGAATACAACGTCAACATTTTGCCCCGACATACATAACTGTTATGGTTTCAATAGCGC-CTT-ATTT
gi|33221 : TGTCCAGCATACCA----TCTTCGGATTTCGTTTACATG----TACACTAAATGGTGTAAACGTTGGCAAA-AA-----TGTATAGACCACGGAGGAGAGTATTTTAAGAAAGAGTGACTGGGTAAAT-----GT----GAT--ACG--AAAGCACCGTTTTTAT-TTACTGACGTCG-GGTTTTGGTGAATACAACGTCAACATTTTGCCCCGACATACATAACTGTTATGGTTTCAATAGCGT-CTT-ATTT
gi|33222 : TGTCCAGTATACCA----TCTTCAGATTTCGTTAACATG----TTCACTCAATAGTGTAAATGGTGGCAAA-AA-----CGTATAGACCACGGAGGAGAGTATTTTGAGAAGAAGCGACACAGTAAAT-----TT----GAT--ACA--AAAGCACC-TATTTAGAATATTGACGTCG-GTTTTTGTTGAATACAACGTTATCATTTTGCCCCGACATAACTAACTGCCATGCTTTGAATAGCGC-CTT-ATTT
gi|33223 : TGTCCAGCATACCA----TCTTCAGATTTCATTTATATG----TACACTAAATGGTGTAATTGGTGACAAC-AA-----TGT-TAGACCACGGAGGAGAGTATTTTGAGAAAGAGTGACTGAGTAAAT-----GT----GAT--ATG--AAAGCATC-TGTTTATTATACTGAATTTG-GTTTTTGGTGAATACAAAGTCAACATTTTGCCCCGAAATATATAACTGCTATGGTATGAATAGCGC-CTT-ATTT
gi|33224 : TGTCCAGTATACCA----TCTTCTGATTTTGTTAACATG----TTCACTGAATGGTGTAAATGGTGGCAAA-AA-----CGTATAGCCCATGGAGGAGAGTATTTTGAGAA-AAGTGACTCAGTAAAT-----TT----GAT--GCA--AAAGCACC-TGTTAAAAATATTGACGTCG-TTTTTTGTTGAAT---ACGTCATCATTTTGCCCCGACATATCTAACTGCTATGCTTTGAATAGTGC-CTT-ATTT
gi|33225 : TGTTCAGTATACCA----TCTTCGAATTTCATAAACATG----TTCACTCAGTGGTGTAAATGGTAGCAAA-AA-----CGTATAGACCACGGAGGACAGTATTTTGAGAAGAAGTGACTCAGAAAAT-----TT----GAT--ACA--AAAGCACC-TATTTTTAATATTGACATCT-ATTTTTGTTGAATACAACGTCATCGTTTTGCCCCGACATATCTAACTGCTATGTTTTGAATAGTGC-CTT-TTTT
gi|33226 : TGTCCAGTATACCA----TCTTCTGATTTTGTTAACATG----TTCACTGAATGGTGTAAATGATGGCAAATAA-----AGTATAGACCACAGAGGAGAGTATTTTGAGAAGAAGTAACTCAGTAATT-----TT----GAT--ACA--AAAGCACC-TGTTTAAAATATTGACGTCA-TTTTTTGTTGTATACAACGTCATCATTTTGCCCAGACATATCTAACTGCTATGCTTTGAAAAGTGC-CTT-ATTT
gi|33227 : TGTCCAGTATACCA----TCTTGAGATTTCATTAACATA----TTCACTCAATGGTGTAAATGGTGGCAAA-AA-----CATACATACCATGAATGCGAGTATTTTGAGAATGAGTGACTCAGTAAAT-----TT----GAT--ACA--AAGGCACC-TATTTAAAATATTGACGTC--GTTTTTTTTGAAT---ACGTCATCATTTTGCCCCAACATAACTAACTGCTATGCTTTGACTAGCGC-CTT-ATTT
gi|33228 : TGTCCAGTATACCA----TCTTTGGATTTAGTTAACATG----TTTACTGAATGGTGTAAATGGTGGCAAA-AA-----TATATAGATCATGGAGGAGAGTATTTTGAGAAGGAGTGACTCAGTAAAT-----TT----TAT--ACA--AAAGCACC-CATTT-GAATAATGACGTCATTTTTTTGTTGAATATAACCTCATCAGTTTGCCCCCACATATCTAACTGCTATACTTTGAATAGTGC-CTT-ATTT
gi|33229 : TGTCAAGTATAC-A----TCTTGAGATTTTGTTAACACA----TTTGTTCAATGGTGTAAATGGTGCCAAA-AA-----CGTAAAGACCATGGATGAGGGTATTTCGAAAAGAAGTGACTCAGTAAAT-----TT----GAT--ACA--AAAGCACC-TGTTTAAAATATTGACGTCG-GTTTTTGTTGAATACAACGTCATCATTTTGCCCTGACATATCTAACTGCTCTGCTTTGAACAGTGC-CTTAATTT
gi|33230 : TGTCCAATATACCA----TCTTCTGATTTCGTTGACATG----TTTACTCAATGGTGTAAATGGTGACAAA-AAAGTATAGTATAGATCATGGAGGAGAGTATTTTGAGAAGAAGTGACTCAGTAAATGAAAACA----GAC--ATG--AAAGCACC-TGTTTATAATATTGACATTG-GTTTTTGGTGAATATAATGTCGTCATTTTGCC----CGTATTTAACAGTTATGCTTTGAATAGCTT-CTT-ATTT
gi|33231 : TGTCCAGTATACCA----TCTTCTGATTTTGTTAACTTG----TTCACTGAATGATGTAAATGATGGCAAA-AA-----CATATAGACCATGGAGGAGAGTA-----------------------AAT-----TT----GATACACA--AAAGCACC-TGTTTAAAATATTGACGTCA---TTTTGTTGAATACAACGTCATCATTTTGCCCCGCTATATCTAACTGTTATGCTTTGAATAGTGC-CTT-ATTT
gi|33232 : TGTCAAGTATACCA----TCTTTTGATTTCGTTAACATG----TTCACTCAATGGTGTAAATGGTGGCAAA-TA-----CGTAAAGATCTCGGGGGATAGTGTTTTGAGAAGGATTTACTCAGTAAA---------------------------------TTTAAAATATTGACAACG-TTTTTGGTTGAAAACAACGTCATCCTTTTGCTCCGACATATCTAATTGCTATGCTTTGAATAGCGC-CTT-AT
gi|33233 : TATCAAGCATACCA----TCTTCAGATCTCGTTGACATA----TTCACTGAATGGTGAAAACAATGGCAAA-AAA----TGTACAGACCGCGGATGAGAGTATTTTGAGAAGAAATGGATCAGCAAAT-----GT----GAT--ATG--AAAGCACC-TGTTTATTACACTGGTGTCG-G-TTTTGGCGAATACAACGTCGTCAATTTG-CCCGACATATCTA
gi|33234 : TGTCCAGAATACCA----TCTTCGGAT----------------TTCACTCAATGGTGTAAATGGTGGCAAA-AT-----CATACTAACCATGGAGGA------TTTGAGAAGGAGTGACTCAGTATTT-----TT----GAT--ACA--AAAGCACC-TTTTTGAAATATTGAAATTG-GTTTTTGTTG------ACGTCATCATTTTGCCCTGATATAACAAACTGCTATGCTTTGAATAGCAC-CTT-ATTT
gi|33235 : TGTCCAGTATACCA----TCTTCAGATTTAGTTTACATG----TTCACTCAATGGTTTAAACGGTGGCAAA-AA-----TGTATAGATCATGGAGGAGAGTAGTTTGAGAAGGAGTGACTCATTCAAT-----GT----GAT--ATA--AAAGCACT-TGTTCATAATATTG
gi|33236 : TGTCCAGTATACCA----TCTTGAGATTTCGTTAACATA----T------AA----ATAAGTTATGGCAAA-AG-----TCTACGGAC
gi|33237 : TGTCCAGTATACCA----TCTTCTGATTTTATTAATA-G----TAAACTTAATAG
gi|33238 : TCCAGTATACCA----TCTTCGGATTTCGTTTACATGCATGTTCACTCAATGTTGTAAATAGTGGTAAA-TA-----TGTATAGACCATGGAAGAGAGTATTTCTAGAAGGGGTGACACAGTAAA-------T----GAT--ATATGAAAGCATC-TTTTTATAATATTGACGTTG-GTTCTTGGTGAATACTATGTCGTCATTTTGTCCTGACATATGTAACTGTTATGCTTTGAATAGCGC-CT
gi|33239 : TCCAGCGTACCAGCCATCTTCAGATTTCATTCACATG----TTCACTCAATGGTGTAAATGGTGACAAA-A------TGTATAGAACAAGGAAGAGAGTATTTTGAGACG---TGA---------T-----TT----GA---------AAGTACC-TGTTTATATTACTGACATCG-GTTTTGGT-GAATACAATGTCTTCATTTTGCCCCGACATATACAACTGTCATGGTTTGAATAGCAC-CTT-GTCT
gi|33240 : AGTATAC-A----TCTTGAGATTTC-TTAACATA----TTCACTCAATGGTTTAAATGGTGGTAAA-AA-----CATATAGACCATGAATGAGAGTATTTTGAGAATGAGTGACTCAGTAAAT-----TT----GAT--ACA--AAAGCACC-TATCTAAAATATTGACGTCG-GTTTTTGTTGAAT---ACGTCATCATTTTGCCCCGACATAACCAACTGCTATGCTTTGACAAGCGC-CTT-ATTT
gi|33241 : C-TGTTTGTAATATCAACGTCA-ATTTTGGC--GATACAACGTTGTCATTTTGTCCCGACATATTTAACTGTTATTGTTTGAAAACCGCACCT-ATTT
blockSeqs : GCCA G CATG A T AGTAT GAAAAC GGCA AC TG G T T A A
blockSeqs : . G . A . A G . . . . T . . .
blockSeqs : . A . C . . T . . . . G . . .
blockSeqs : . A . A . . G . . . . T . . .
blockSeqs : . T . G . . T . . . . A . . .
blockSeqs : . G . C . . T . . . . T . . .
blockSeqs : . T . G . . T . . . . A . . .
blockSeqs : . A . C . . T . . . . A . . .
blockSeqs : . G . G . . T . . . . G . . .
blockSeqs : . A . C . . T . . . . A . . .
blockSeqs : . T . C . . T . . . . T . . .
blockSeqs : . T . G . . G . . . . A . . .
blockSeqs : . T . C . . T . . . . A . . .
blockSeqs : . A . G . . G . . . . T . . .
blockSeqs : . G . C . . T . . . . A . . .
blockSeqs : . A . C . . T . . . . T . . .
blockSeqs : . A . T . . . . . . . T . . .
blockSeqs : . T . C . . . . . . . T . .
blockSeqs : . G . C . . . . . . . A .
blockSeqs : . A . C . . . T
blockSeqs : . A . .
blockSeqCons : T***** ****
originalCons : TGTCCAGTATACCA----TCTTCGGATTTCGTTAACATG----TTCACTCAATGGTGTAAATGGTGGCAAA-AA-----CGTATAGACCACGGAGGAGAGTATTTTGAGAAGGAGTGACTCAGTAAAT-----TT----GAT--ACA--AAAGCACC-TGTTTANAATATTGACGTCG-GTTTTTGTTGAATACAACGTCATCATTTTGCCCCGACATATCTAACTGCTATGCTTTGAATAGCGC-CTT-ATTT
finalCons : TGTCCAGTATACCA----TCTTCGGATTTCGTTAACATG----TTCACTCAATGGTGTAAATGGTGGCAAA-AA-----CGTATAGACCACGGAGGAGAGTATTTTGAGAAGGAGTGACTCAGTAAATT-----T----GAT--ACA--AAAGCACC-TGTTTANAATATTGACGTCG-GTTTTTGTTGAATACAACGTCATCATTTTGCCCCGACATATCTAACTGCTATGCTTTGAATAGCGC-CTT-ATTT
Alignments
lowQualScore : 3333 3 0 3333 2 1 66666 666666 8888 22 22 1 1 2 0 2 2
lowQualScore : .... . . .... . . ..... ...... .... .. .. . . . . . .
lowQualScore : 9999 4 6 9999 1 9 77777 444444 5555 88 88 9 0 0 1 1 2
consensus : TGTCCAGTATACCA----TCTTCGGATTTCGTTAACATG----TTCACTCAATGGTGTAAATGGTGGCAAA-AA-----CGTATAGACCACGGAGGAGAGTATTTTGAGAAGGAGTGACTCAGTAAAT-----TT----GAT--ACA--AAAGCACC-TGTTTANAATATTGACGTCG-GTTTTTGTTGAATACAACGTCATCATTTTGCCCCGACATATCTAACTGCTATGCTTTGAATAGCGC-CTT-ATTT
Reference ( family-759 ) : TGTCCAGTATACCA----TCTTCGGATTTCGTTAACATG----TTCACTCAATGGTGTAAATGGTGGCAAA-AA-----CGTATAGACCACGGAGGAGAGTATTTTGAGAAGGAGTGACTCAGTAAAT-----TT----GAT--ACA--AAAGCACC-TGTTTANAATATTGACGTCG-GTTTTTGTTGAATACAACGTCATCATTTTGCCCCGACATATCTAACTGCTATGCTTTGAATAGCGC-CTT-ATTT
gi|33219 : TGTCCAGCATACCA----TCTTCGGATTTCGTTGACATG----TACACTAAATGGTGTAAACGGTGGCAAA-AA-----TGTATAGACAACGGAGGAGAGTATTTTGAGAAAGAGTGACTCGGTAA--------TGGCAGAT--ACA--AAAGCACC-TGTTTTTTATACTGACGTTG-GTTTTTGGTGAATACAACGTCAACATTTTGCCCCGACATACATAACTGTTATGGTTTCAATAGCGC-CTT-ATTT
gi|33220 : TGTCCAGCATACCA----TCTTCGGATTTCGTTGACATG----TACACTAAATGGTGTAAACGGTGGCAAA-AA-----TGTATAGACAACGGAGGAGAGTATTTTGAGAAAGAGTGACTCGGTAA--------TGGCAGAT--ACA--AAAGCACC-TGTTTTTTATACTGACGTTG-GTTTTTGGTGAATACAACGTCAACATTTTGCCCCGACATACATAACTGTTATGGTTTCAATAGCGC-CTT-ATTT
gi|33221 : TGTCCAGCATACCA----TCTTCGGATTTCGTTTACATG----TACACTAAATGGTGTAAACGTTGGCAAA-AA-----TGTATAGACCACGGAGGAGAGTATTTTAAGAAAGAGTGACTGGGTAAAT-----GT----GAT--ACG--AAAGCACCGTTTTTAT-TTACTGACGTCG-GGTTTTGGTGAATACAACGTCAACATTTTGCCCCGACATACATAACTGTTATGGTTTCAATAGCGT-CTT-ATTT
gi|33222 : TGTCCAGTATACCA----TCTTCAGATTTCGTTAACATG----TTCACTCAATAGTGTAAATGGTGGCAAA-AA-----CGTATAGACCACGGAGGAGAGTATTTTGAGAAGAAGCGACACAGTAAAT-----TT----GAT--ACA--AAAGCACC-TATTTAGAATATTGACGTCG-GTTTTTGTTGAATACAACGTTATCATTTTGCCCCGACATAACTAACTGCCATGCTTTGAATAGCGC-CTT-ATTT
gi|33223 : TGTCCAGCATACCA----TCTTCAGATTTCATTTATATG----TACACTAAATGGTGTAATTGGTGACAAC-AA-----TGT-TAGACCACGGAGGAGAGTATTTTGAGAAAGAGTGACTGAGTAAAT-----GT----GAT--ATG--AAAGCATC-TGTTTATTATACTGAATTTG-GTTTTTGGTGAATACAAAGTCAACATTTTGCCCCGAAATATATAACTGCTATGGTATGAATAGCGC-CTT-ATTT
gi|33224 : TGTCCAGTATACCA----TCTTCTGATTTTGTTAACATG----TTCACTGAATGGTGTAAATGGTGGCAAA-AA-----CGTATAGCCCATGGAGGAGAGTATTTTGAGAA-AAGTGACTCAGTAAAT-----TT----GAT--GCA--AAAGCACC-TGTTAAAAATATTGACGTCG-TTTTTTGTTGAAT---ACGTCATCATTTTGCCCCGACATATCTAACTGCTATGCTTTGAATAGTGC-CTT-ATTT
gi|33225 : TGTTCAGTATACCA----TCTTCGAATTTCATAAACATG----TTCACTCAGTGGTGTAAATGGTAGCAAA-AA-----CGTATAGACCACGGAGGACAGTATTTTGAGAAGAAGTGACTCAGAAAAT-----TT----GAT--ACA--AAAGCACC-TATTTTTAATATTGACATCT-ATTTTTGTTGAATACAACGTCATCGTTTTGCCCCGACATATCTAACTGCTATGTTTTGAATAGTGC-CTT-TTTT
gi|33226 : TGTCCAGTATACCA----TCTTCTGATTTTGTTAACATG----TTCACTGAATGGTGTAAATGATGGCAAATAA-----AGTATAGACCACAGAGGAGAGTATTTTGAGAAGAAGTAACTCAGTAATT-----TT----GAT--ACA--AAAGCACC-TGTTTAAAATATTGACGTCA-TTTTTTGTTGTATACAACGTCATCATTTTGCCCAGACATATCTAACTGCTATGCTTTGAAAAGTGC-CTT-ATTT
gi|33227 : TGTCCAGTATACCA----TCTTGAGATTTCATTAACATA----TTCACTCAATGGTGTAAATGGTGGCAAA-AA-----CATACATACCATGAATGCGAGTATTTTGAGAATGAGTGACTCAGTAAAT-----TT----GAT--ACA--AAGGCACC-TATTTAAAATATTGACGTC--GTTTTTTTTGAAT---ACGTCATCATTTTGCCCCAACATAACTAACTGCTATGCTTTGACTAGCGC-CTT-ATTT
gi|33228 : TGTCCAGTATACCA----TCTTTGGATTTAGTTAACATG----TTTACTGAATGGTGTAAATGGTGGCAAA-AA-----TATATAGATCATGGAGGAGAGTATTTTGAGAAGGAGTGACTCAGTAAAT-----TT----TAT--ACA--AAAGCACC-CATTT-GAATAATGACGTCATTTTTTTGTTGAATATAACCTCATCAGTTTGCCCCCACATATCTAACTGCTATACTTTGAATAGTGC-CTT-ATTT
gi|33229 : TGTCAAGTATAC-A----TCTTGAGATTTTGTTAACACA----TTTGTTCAATGGTGTAAATGGTGCCAAA-AA-----CGTAAAGACCATGGATGAGGGTATTTCGAAAAGAAGTGACTCAGTAAAT-----TT----GAT--ACA--AAAGCACC-TGTTTAAAATATTGACGTCG-GTTTTTGTTGAATACAACGTCATCATTTTGCCCTGACATATCTAACTGCTCTGCTTTGAACAGTGC-CTTAATTT
gi|33230 : TGTCCAATATACCA----TCTTCTGATTTCGTTGACATG----TTTACTCAATGGTGTAAATGGTGACAAA-AAAGTATAGTATAGATCATGGAGGAGAGTATTTTGAGAAGAAGTGACTCAGTAAATGAAAACA----GAC--ATG--AAAGCACC-TGTTTATAATATTGACATTG-GTTTTTGGTGAATATAATGTCGTCATTTTGCC----CGTATTTAACAGTTATGCTTTGAATAGCTT-CTT-ATTT
gi|33231 : TGTCCAGTATACCA----TCTTCTGATTTTGTTAACTTG----TTCACTGAATGATGTAAATGATGGCAAA-AA-----CATATAGACCATGGAGGAGAGTA-----------------------AAT-----TT----GATACACA--AAAGCACC-TGTTTAAAATATTGACGTCA---TTTTGTTGAATACAACGTCATCATTTTGCCCCGCTATATCTAACTGTTATGCTTTGAATAGTGC-CTT-ATTT
gi|33232 : TGTCAAGTATACCA----TCTTTTGATTTCGTTAACATG----TTCACTCAATGGTGTAAATGGTGGCAAA-TA-----CGTAAAGATCTCGGGGGATAGTGTTTTGAGAAGGATTTACTCAGTAAA---------------------------------TTTAAAATATTGACAACG-TTTTTGGTTGAAAACAACGTCATCCTTTTGCTCCGACATATCTAATTGCTATGCTTTGAATAGCGC-CTT-AT
gi|33233 : TATCAAGCATACCA----TCTTCAGATCTCGTTGACATA----TTCACTGAATGGTGAAAACAATGGCAAA-AAA----TGTACAGACCGCGGATGAGAGTATTTTGAGAAGAAATGGATCAGCAAAT-----GT----GAT--ATG--AAAGCACC-TGTTTATTACACTGGTGTCG-G-TTTTGGCGAATACAACGTCGTCAATTTG-CCCGACATATCTA
gi|33234 : TGTCCAGAATACCA----TCTTCGGAT----------------TTCACTCAATGGTGTAAATGGTGGCAAA-AT-----CATACTAACCATGGAGGA------TTTGAGAAGGAGTGACTCAGTATTT-----TT----GAT--ACA--AAAGCACC-TTTTTGAAATATTGAAATTG-GTTTTTGTTG------ACGTCATCATTTTGCCCTGATATAACAAACTGCTATGCTTTGAATAGCAC-CTT-ATTT
gi|33235 : TGTCCAGTATACCA----TCTTCAGATTTAGTTTACATG----TTCACTCAATGGTTTAAACGGTGGCAAA-AA-----TGTATAGATCATGGAGGAGAGTAGTTTGAGAAGGAGTGACTCATTCAAT-----GT----GAT--ATA--AAAGCACT-TGTTCATAATATTG
gi|33236 : TGTCCAGTATACCA----TCTTGAGATTTCGTTAACATA----T------AA----ATAAGTTATGGCAAA-AG-----TCTACGGAC
gi|33237 : TGTCCAGTATACCA----TCTTCTGATTTTATTAATA-G----TAAACTTAATAG
gi|33238 : TCCAGTATACCA----TCTTCGGATTTCGTTTACATGCATGTTCACTCAATGTTGTAAATAGTGGTAAA-TA-----TGTATAGACCATGGAAGAGAGTATTTCTAGAAGGGGTGACACAGTAAA-------T----GAT--ATATGAAAGCATC-TTTTTATAATATTGACGTTG-GTTCTTGGTGAATACTATGTCGTCATTTTGTCCTGACATATGTAACTGTTATGCTTTGAATAGCGC-CT
gi|33239 : TCCAGCGTACCAGCCATCTTCAGATTTCATTCACATG----TTCACTCAATGGTGTAAATGGTGACAAA-A------TGTATAGAACAAGGAAGAGAGTATTTTGAGACG---TGA---------T-----TT----GA---------AAGTACC-TGTTTATATTACTGACATCG-GTTTTGGT-GAATACAATGTCTTCATTTTGCCCCGACATATACAACTGTCATGGTTTGAATAGCAC-CTT-GTCT
gi|33240 : AGTATAC-A----TCTTGAGATTTC-TTAACATA----TTCACTCAATGGTTTAAATGGTGGTAAA-AA-----CATATAGACCATGAATGAGAGTATTTTGAGAATGAGTGACTCAGTAAAT-----TT----GAT--ACA--AAAGCACC-TATCTAAAATATTGACGTCG-GTTTTTGTTGAAT---ACGTCATCATTTTGCCCCGACATAACCAACTGCTATGCTTTGACAAGCGC-CTT-ATTT
gi|33241 : C-TGTTTGTAATATCAACGTCA-ATTTTGGC--GATACAACGTTGTCATTTTGTCCCGACATATTTAACTGTTATTGTTTGAAAACCGCACCT-ATTT