lowQualScore : 11 1 1
lowQualScore : 2 4 1 4444 1 5 44 3333 3 2 2 5 444 33 33 2 6 555 555 5
lowQualScore : . . . .... . . .. .... . . . . ... .. .. . . ... ... .
lowQualScore : 0 0 9 0000 1 2 99 9999 9 1 1 4 111 22 22 4 8 000 000 9
consensus : CATTTACACCATTGAGTGAACA-TG----TTAACGAAATCCGAAGA----TGGTATACTGGACACAANATTCTGTAAAACA-CGCT-TTGATTCCAATATGTCTTCAAATCGGCTT---CCCATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC---AAAAACATT---AATTTTGTGACATTTA
Reference ( gi|62440 ) : CATTTACACCATTGAGTGAATA-TG----TTAATGAAATCTCAAGA----TGGTATACTGGACACAAAATTCTGTAAAACA-TGCT-TTGATTCCAATATGTCTTCAAATCAACTT---CCCATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCCAACTC---AAAAACATT---ATTTTTGTGACATTTA
gi|62437 : CATTTACACCATTCAGTGAACA-TG----TTAACAAAATCAGAAGA----TGGTATACTGGACATAAAATTCTGTAAAACA-TGCT-TTGATTCCAATATGCCTTCAAATCGACTT---CCCATTT--G--CTCTTCT-TTAATGACTAATTCCCAGCCATCTC---AAAAACATT---AATTTTGTGATATTTA
gi|62439 : CATTTACACCATTCAGTAAACA-TG----TTAACTAAATCCAAAGA----TGGTATACTGGACACAAAATTCTGTAAAACA-TGCT-TTGATTCCAATATGTCTTCAAATCGACTT---CCCATTT--GATCTTTTTT-TTAATGACTTATTCCCGGCCATCAC---AAAAACATT---AATTTTGTGACATTTA
gi|62438 : CATTTACACCATTCAGTGAACA-TG----TTAACAAAATCAGAAGA----TGGTATACTGGACACAAAATTCTGTAAAAGAATGCT-CTGATTCCAATTTGTCTTCAAATTGACTT---CCTATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC---AAAAACATT---AATTTTGTGACATT
gi|62444 : CATTTAAACCATTGAGTGAATA-TG----TTAA-GAAATCTCAAGA----TG-TATACTTGTCACAAAATTCTGTAAAACA-TGCT-TTGTTTTCAATATGTCTTCAAATCGACAC---CCCATTT--G--CTC-TTT-TAAATGACTTATTCCCAGCCATCTC---AAAAACATT---AATTTTGTGACATTTA
gi|62443 : CATTTACACCACTGAGTGAACA-TG----TTTATGAAATTCGAAGA----TGGTATACTGAACACAAAATTCTGTAAAACA-TGCT-TTAATTCGAATATATCTTCAAATTGACTT---CCCATTT--G--CTCCTTT-TTGATGACTGATTTCAGGCCATCTC---AAAAATATT---AAATTTGTGAAATTTA
gi|62441 : CATTTACACCATTGAGTGAA-----------------ATCCGAAGA----TGGTATTCTGGACACAATATTCTGTAAAACA-TGCT-TTAATTCCAATATGTCTTCAAATTGACTT---CCAATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCTATCTC---AAAAACATT---AATTTTGTGATATTTA
gi|62445 : CATTTACACCATTGAACAAATG-TG----TTAACAAAATCTCAAGA----TG-TATACTTGACACAAAATTCTGTAAAACA-TGCT-TTGATTCTAAT--GTCTTCAAATCGGTTT---GC-ATTA--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC---AAAACCATT---AATTTTTTTACATTTA
gi|62442 : CATTTACATCATTCAGTGAACA-AG----TTAACAAAATCAGAAGA----TGGTATACTGGACACAAAATCCTGTAAAACA-TGCT-TTGATTCCAATTTGTTTTCAAATCGACTT---CCCATTT--G--CTCTTTT-TTAATGAATGATTCCCGGCCA---------------T---AATTTTGTTACATTTA
gi|62448 : CGTTTAAACCATTGAGTGAACA-TG----TAAACTAAATCTGAAGA----TGGTATACTGGACACAATATTCTGTAAAGAA-TATT-TTAGTTCCATTTTTTTTTCAAAT---CTTGCCCCCA-GA--G--TTCTTTT-TTAATGACTGATTCCTGGCCATCTC---GAAAATATT---
gi|62447 : CGTTTACACCATTTAGTGTACA-TG----TCAACGAAATCCGAAGA----TGGTATGCTGGACACAATATTCTGCAAAGCA-CATT-TTAATTCAGATATGTCTTCAAATAGGCGC---CCTCTAA--G--TTCTTTT-TTAATG
gi|62446 : CGTTTACACCATTTAGTGTACA-TG----TCAACGAAATCCGAAGA----TGGTATGCTGGACACAATATTCTGCAAAGCA-CATT-TTAATTCAGATATGTCTTCAAATAGGCGC---CCTCTAA--G--TTCTTTT-TTAATG
gi|62450 : CAATTACACCATTTAGTGTACA-TA----TAAATGAAATCTGAAGA----TGGTATGCTGGACACAATATTCTGTAAAGCA-CATT-TTAGTTCTGCTATGTCTTCAAATCGG-TG---CCC-TCTAAG--TTCTTTT-TTAATG
gi|62449 : CATTTACACCATTGAGTAAACA-TG----TCAACGAAATCAGAAGA----TGGTATATTGGACACAATATTCTGTGAAACA-TGTT-TTAATTCCAACATAT
gi|62452 : CATTTACACCATTGAGTGAACA-TG----TGAATGAAATCTGAAGATGGCTGGTACGCTGGAAACAACATTCTGCACAGCA-CAAT-TTAATTCCAATATGTTTTCAAACCTGCTT---
gi|62451 : CGTTTACACCATTTAGTGTACA-TG----TAAACGAAATCCGAAGA----TGGTATGCTGGACACAATATTCTGCAAAGCA-AAGT-TTAATTCCGTTATGTCTTTTAAT
gi|62453 : CATTTACACTATTGAGTGAACA-TG----TTAACGAAATCTGAAGA----TGGTATACTGGACA
gi|62454 : CATTTACACCATTGAGTGAACA-TG----TTAACGAAATCAAAAGA----TGGTATACTTGACACAA
gi|62455 : ATTTACAACATTGAGTGAACA-TGCATGTAAACGAAATCCGAAGA----TGGTATACTGGAAACAATATCCTGTAAAGCA-TGCT-TTAATTCCAATACGTCTTCAAAGCGGCGT---CGCATTT--T--TCCTTCTATTAATGAGTGATCCTCGGC--ACTCTCAAAAAACATT---tgctcttttttaatgactgattcccggccatctcaaaaaaattgtcacttttgtgacattta
gi|62456 : TTTTCACCATTCAGTGAATA-TG----TCAACGAGATCTGAAGA----TGGTATGCTTGATACAATATTC-GTAA
gi|62457 : CTATTAAGTT--TACTA----TTAATAAAATCAGAAGA----TGGTATACTGGACACAAAATTCTTTAAAACA-TGCT-TTGATTCCAATATGTCTTCAAATCGACTT---CCCATTT--G--CTCTTTC-TTAATGACTGATTCCCTGCCATCTC---AAAAACATT---AATTTTATGACATTTA
gi|62458 : ATA-TG----TTAACGAAATCTCAAGA----TGGTATACTGGACACAAAATTCTGTAAAACA-TGCT-TTGATTCCAATATGTCTTCAAATCAACTT---CCCATTT--G--CTCTTTT-TTAATGACTGATTCCCAGCCGTCTC---AAAAACATT---AATTTTGTGACATTTA
gi|62459 : GA----TGGCATA--------AAAATGATGCTAAATA-TTCAATCAATTCCAACGTGTCTTCAAATCAGCGT---CCTATTT--G--TTCTTTT-TTCATGACCGATTCCTGATCATCTC---AAAAACA--------TTTGTGACATTCA
gi|62454 : T--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC---AAAAAAATTGTCACTTTTGTGACATTTA
Alignments
lowQualScore : 1 3333 0 3 3333 1 55 2 0 33 33 2 2 444
lowQualScore : . .... . . .... . .. . . .. .. . . ...
lowQualScore : 5 9999 6 4 9999 0 22 2 5 11 11 2 7 777
consensus : CATTTACACCATTGAGTGAACATG----TTAACGAAATCCGAAGA----TGGTATACTGGACACAANATTCTGTAAAACA-CGCTTTGATTCCAATATGTCTTCAAATC-GGCTTCCCATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC-AAAAACATT---AATTTTGTGACATTTA
Reference ( family-758 ) : CATTTACACCATTGAGTGAACATG----TTAACGAAATCCGAAGA----TGGTATACTGGACACAANATTCTGTAAAACA-CGCTTTGATTCCAATATGTCTTCAAATC-GGCTTCCCATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC-AAAAACATT---AATTTTGTGACATTTA
gi|62437 : CATTTACACCATTCAGTGAACATG----TTAACAAAATCAGAAGA----TGGTATACTGGACATAAAATTCTGTAAAACA-TGCTTTGATTCCAATATGCCTTCAAATC-GACTTCCCATTT--G--CTCTTCT-TTAATGACTAATTCCCAGCCATCTC-AAAAACATT---AATTTTGTGATATTTA
gi|62438 : CATTTACACCATTCAGTGAACATG----TTAACAAAATCAGAAGA----TGGTATACTGGACACAAAATTCTGTAAAAGAATGCTCTGATTCCAATTTGTCTTCAAATT-GACTTCCTATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC-AAAAACATT---AATTTTGTGACATT
gi|62439 : CATTTACACCATTCAGTAAACATG----TTAACTAAATCCAAAGA----TGGTATACTGGACACAAAATTCTGTAAAACA-TGCTTTGATTCCAATATGTCTTCAAATC-GACTTCCCATTT--GATCTTTTTT-TTAATGACTTATTCCCGGCCATCAC-AAAAACATT---AATTTTGTGACATTTA
gi|62440 : CATTTACACCATTGAGTGAATATG----TTAATGAAATCTCAAGA----TGGTATACTGGACACAAAATTCTGTAAAACA-TGCTTTGATTCCAATATGTCTTCAAATC-AACTTCCCATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCCAACTC-AAAAACATT---ATTTTTGTGACATTTA
gi|62441 : CATTTACACCATTGAGTGAA----------------ATCCGAAGA----TGGTATTCTGGACACAATATTCTGTAAAACA-TGCTTTAATTCCAATATGTCTTCAAATT-GACTTCCAATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCTATCTC-AAAAACATT---AATTTTGTGATATTTA
gi|62442 : CATTTACATCATTCAGTGAACAAG----TTAACAAAATCAGAAGA----TGGTATACTGGACACAAAATCCTGTAAAACA-TGCTTTGATTCCAATTTGTTTTCAAATC-GACTTCCCATTT--G--CTCTTTT-TTAATGAATGATTCCCGGCCA-------------T---AATTTTGTTACATTTA
gi|62443 : CATTTACACCACTGAGTGAACATG----TTTATGAAATTCGAAGA----TGGTATACTGAACACAAAATTCTGTAAAACA-TGCTTTAATTCGAATATATCTTCAAATT-GACTTCCCATTT--G--CTCCTTT-TTGATGACTGATTTCAGGCCATCTC-AAAAATATT---AAATTTGTGAAATTTA
gi|62444 : CATTTAAACCATTGAGTGAATATG----TTAA-GAAATCTCAAGA----TG-TATACTTGTCACAAAATTCTGTAAAACA-TGCTTTGTTTTCAATATGTCTTCAAATC-GACACCCCATTT--G--CTC-TTT-TAAATGACTTATTCCCAGCCATCTC-AAAAACATT---AATTTTGTGACATTTA
gi|62445 : CATTTACACCATTGAACAAATGTG----TTAACAAAATCTCAAGA----TG-TATACTTGACACAAAATTCTGTAAAACA-TGCTTTGATTCTAAT--GTCTTCAAATC-GGTTTGC-ATTA--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC-AAAACCATT---AATTTTTTTACATTTA
gi|62446 : CGTTTACACCATTTAGTGTACATG----TCAACGAAATCCGAAGA----TGGTATGCTGGACACAATATTCTGCAAAGCA-CATTTTAATTCAGATATGTCTTCAAATA-GGCGCCCTCTAA--G--TTCTTTT-TTAATG
gi|62447 : CGTTTACACCATTTAGTGTACATG----TCAACGAAATCCGAAGA----TGGTATGCTGGACACAATATTCTGCAAAGCA-CATTTTAATTCAGATATGTCTTCAAATA-GGCGCCCTCTAA--G--TTCTTTT-TTAATG
gi|62448 : CGTTTAAACCATTGAGTGAACATG----TAAACTAAATCTGAAGA----TGGTATACTGGACACAATATTCTGTAAAGAA-TATTTTAGTTCCATTTTTTTTTCAAATCTTGC-CCCCA-GA--G--TTCTTTT-TTAATGACTGATTCCTGGCCATCTC-GAAAATATT---
gi|62449 : CATTTACACCATTGAGTAAACATG----TCAACGAAATCAGAAGA----TGGTATATTGGACACAATATTCTGTGAAACA-TGTTTTAATTCCAACATAT
gi|62450 : CAATTACACCATTTAGTGTACATA----TAAATGAAATCTGAAGA----TGGTATGCTGGACACAATATTCTGTAAAGCA-CATTTTAGTTCTGCTATGTCTTCAAATC-GG-TGCCC-TCTAAG--TTCTTTT-TTAATG
gi|62451 : CGTTTACACCATTTAGTGTACATG----TAAACGAAATCCGAAGA----TGGTATGCTGGACACAATATTCTGCAAAGCA-AAGTTTAATTCCGTTATGTCTTTTAAT
gi|62452 : CATTTACACCATTGAGTGAACATG----TGAATGAAATCTGAAGATGGCTGGTACGCTGGAAACAACATTCTGCACAGCA-CAATTTAATTCCAATATGTTTTCAAACC-TGCTT
gi|62453 : CATTTACACTATTGAGTGAACATG----TTAACGAAATCTGAAGA----TGGTATACTGGACA
gi|62454 : CATTTACACCATTGAGTGAACATG----TTAACGAAATCAAAAGA----TGGTATACTTGACACAATGCTCT
gi|62454 : T--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC-AAAAAAATTGTCACTTTTGTGACATTTAtttttaatgactgattcccggccatctcaaaaaaattgtcacttttgtgacattta
gi|62455 : catttacaccattgagtgaacatgttaacgaaatcaaaagatggtatacttgacacaaATTTACAACATTGAGTGAACATGCATGTAAACGAAATCCGAAGA----TGGTATACTGGAAACAATATCCTGTAAAGCA-TGCTTTAATTCCAATACGTCTTCAAAGC-GGCGTCGCATTT--T--TCCTTCTATTAATGAGTGATCCTCGGCACTCTCAAAAAACATT---
gi|62456 : TTTTCACCATTCAGTGAATATG----TCAACGAGATCTGAAGA----TGGTATGCTTGATACAATATTC-GTAA
gi|62457 : CTATTAAGTTTAC-TA----TTAATAAAATCAGAAGA----TGGTATACTGGACACAAAATTCTTTAAAACA-TGCTTTGATTCCAATATGTCTTCAAATC-GACTTCCCATTT--G--CTCTTTC-TTAATGACTGATTCCCTGCCATCTC-AAAAACATT---AATTTTATGACATTTA
gi|62458 : ATATG----TTAACGAAATCTCAAGA----TGGTATACTGGACACAAAATTCTGTAAAACA-TGCTTTGATTCCAATATGTCTTCAAATC-AACTTCCCATTT--G--CTCTTTT-TTAATGACTGATTCCCAGCCGTCTC-AAAAACATT---AATTTTGTGACATTTA
gi|62459 : ATTCCAACGTGTCTTCAAATC-AGCGTCCTATTT--G--TTCTTTT-TTCATGACCGATTCCTGATCATCTC-AAAAACA--------TTTGTGACATTCA
Alignments
lowQualScore : 1 3333 0 3 3333 1 55 2 0 33 33 2 2 444
lowQualScore : . .... . . .... . .. . . .. .. . . ...
lowQualScore : 5 9999 6 4 9999 0 22 2 5 11 11 2 7 777
consensus : CATTTACACCATTGAGTGAACATG----TTAACGAAATCCGAAGA----TGGTATACTGGACACAANATTCTGTAAAACA-CGCTTTGATTCCAATATGTCTTCAAATC-GGCTTCCCATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC-AAAAACATT---AATTTTGTGACATTTA
Reference ( family-758 ) : CATTTACACCATTGAGTGAACATG----TTAACGAAATCCGAAGA----TGGTATACTGGACACAANATTCTGTAAAACA-CGCTTTGATTCCAATATGTCTTCAAATC-GGCTTCCCATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC-AAAAACATT---AATTTTGTGACATTTA
gi|62437 : CATTTACACCATTCAGTGAACATG----TTAACAAAATCAGAAGA----TGGTATACTGGACATAAAATTCTGTAAAACA-TGCTTTGATTCCAATATGCCTTCAAATC-GACTTCCCATTT--G--CTCTTCT-TTAATGACTAATTCCCAGCCATCTC-AAAAACATT---AATTTTGTGATATTTA
gi|62438 : CATTTACACCATTCAGTGAACATG----TTAACAAAATCAGAAGA----TGGTATACTGGACACAAAATTCTGTAAAAGAATGCTCTGATTCCAATTTGTCTTCAAATT-GACTTCCTATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC-AAAAACATT---AATTTTGTGACATT
gi|62439 : CATTTACACCATTCAGTAAACATG----TTAACTAAATCCAAAGA----TGGTATACTGGACACAAAATTCTGTAAAACA-TGCTTTGATTCCAATATGTCTTCAAATC-GACTTCCCATTT--GATCTTTTTT-TTAATGACTTATTCCCGGCCATCAC-AAAAACATT---AATTTTGTGACATTTA
gi|62440 : CATTTACACCATTGAGTGAATATG----TTAATGAAATCTCAAGA----TGGTATACTGGACACAAAATTCTGTAAAACA-TGCTTTGATTCCAATATGTCTTCAAATC-AACTTCCCATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCCAACTC-AAAAACATT---ATTTTTGTGACATTTA
gi|62441 : CATTTACACCATTGAGTGAA----------------ATCCGAAGA----TGGTATTCTGGACACAATATTCTGTAAAACA-TGCTTTAATTCCAATATGTCTTCAAATT-GACTTCCAATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCTATCTC-AAAAACATT---AATTTTGTGATATTTA
gi|62442 : CATTTACATCATTCAGTGAACAAG----TTAACAAAATCAGAAGA----TGGTATACTGGACACAAAATCCTGTAAAACA-TGCTTTGATTCCAATTTGTTTTCAAATC-GACTTCCCATTT--G--CTCTTTT-TTAATGAATGATTCCCGGCCA-------------T---AATTTTGTTACATTTA
gi|62443 : CATTTACACCACTGAGTGAACATG----TTTATGAAATTCGAAGA----TGGTATACTGAACACAAAATTCTGTAAAACA-TGCTTTAATTCGAATATATCTTCAAATT-GACTTCCCATTT--G--CTCCTTT-TTGATGACTGATTTCAGGCCATCTC-AAAAATATT---AAATTTGTGAAATTTA
gi|62444 : CATTTAAACCATTGAGTGAATATG----TTAA-GAAATCTCAAGA----TG-TATACTTGTCACAAAATTCTGTAAAACA-TGCTTTGTTTTCAATATGTCTTCAAATC-GACACCCCATTT--G--CTC-TTT-TAAATGACTTATTCCCAGCCATCTC-AAAAACATT---AATTTTGTGACATTTA
gi|62445 : CATTTACACCATTGAACAAATGTG----TTAACAAAATCTCAAGA----TG-TATACTTGACACAAAATTCTGTAAAACA-TGCTTTGATTCTAAT--GTCTTCAAATC-GGTTTGC-ATTA--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC-AAAACCATT---AATTTTTTTACATTTA
gi|62446 : CGTTTACACCATTTAGTGTACATG----TCAACGAAATCCGAAGA----TGGTATGCTGGACACAATATTCTGCAAAGCA-CATTTTAATTCAGATATGTCTTCAAATA-GGCGCCCTCTAA--G--TTCTTTT-TTAATG
gi|62447 : CGTTTACACCATTTAGTGTACATG----TCAACGAAATCCGAAGA----TGGTATGCTGGACACAATATTCTGCAAAGCA-CATTTTAATTCAGATATGTCTTCAAATA-GGCGCCCTCTAA--G--TTCTTTT-TTAATG
gi|62448 : CGTTTAAACCATTGAGTGAACATG----TAAACTAAATCTGAAGA----TGGTATACTGGACACAATATTCTGTAAAGAA-TATTTTAGTTCCATTTTTTTTTCAAATCTTGC-CCCCA-GA--G--TTCTTTT-TTAATGACTGATTCCTGGCCATCTC-GAAAATATT---
gi|62449 : CATTTACACCATTGAGTAAACATG----TCAACGAAATCAGAAGA----TGGTATATTGGACACAATATTCTGTGAAACA-TGTTTTAATTCCAACATAT
gi|62450 : CAATTACACCATTTAGTGTACATA----TAAATGAAATCTGAAGA----TGGTATGCTGGACACAATATTCTGTAAAGCA-CATTTTAGTTCTGCTATGTCTTCAAATC-GG-TGCCC-TCTAAG--TTCTTTT-TTAATG
gi|62451 : CGTTTACACCATTTAGTGTACATG----TAAACGAAATCCGAAGA----TGGTATGCTGGACACAATATTCTGCAAAGCA-AAGTTTAATTCCGTTATGTCTTTTAAT
gi|62452 : CATTTACACCATTGAGTGAACATG----TGAATGAAATCTGAAGATGGCTGGTACGCTGGAAACAACATTCTGCACAGCA-CAATTTAATTCCAATATGTTTTCAAACC-TGCTT
gi|62453 : CATTTACACTATTGAGTGAACATG----TTAACGAAATCTGAAGA----TGGTATACTGGACA
gi|62454 : CATTTACACCATTGAGTGAACATG----TTAACGAAATCAAAAGA----TGGTATACTTGACACAATGCTCT
gi|62454 : T--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC-AAAAAAATTGTCACTTTTGTGACATTTAtttttaatgactgattcccggccatctcaaaaaaattgtcacttttgtgacattta
gi|62455 : catttacaccattgagtgaacatgttaacgaaatcaaaagatggtatacttgacacaaATTTACAACATTGAGTGAACATGCATGTAAACGAAATCCGAAGA----TGGTATACTGGAAACAATATCCTGTAAAGCA-TGCTTTAATTCCAATACGTCTTCAAAGC-GGCGTCGCATTT--T--TCCTTCTATTAATGAGTGATCCTCGGCACTCTCAAAAAACATT---
gi|62456 : TTTTCACCATTCAGTGAATATG----TCAACGAGATCTGAAGA----TGGTATGCTTGATACAATATTC-GTAA
gi|62457 : CTATTAAGTTTAC-TA----TTAATAAAATCAGAAGA----TGGTATACTGGACACAAAATTCTTTAAAACA-TGCTTTGATTCCAATATGTCTTCAAATC-GACTTCCCATTT--G--CTCTTTC-TTAATGACTGATTCCCTGCCATCTC-AAAAACATT---AATTTTATGACATTTA
gi|62458 : ATATG----TTAACGAAATCTCAAGA----TGGTATACTGGACACAAAATTCTGTAAAACA-TGCTTTGATTCCAATATGTCTTCAAATC-AACTTCCCATTT--G--CTCTTTT-TTAATGACTGATTCCCAGCCGTCTC-AAAAACATT---AATTTTGTGACATTTA
gi|62459 : ATTCCAACGTGTCTTCAAATC-AGCGTCCTATTT--G--TTCTTTT-TTCATGACCGATTCCTGATCATCTC-AAAAACA--------TTTGTGACATTCA
blockSeqs : C CATG A TGGC A AT T AA AT A A GTC
blockSeqs : C . C . A T . . . . . .
blockSeqs : G . T . A T . . . . . .
blockSeqs : G . C . T T . . . . . .
blockSeqs : C . A . A T . . . . . .
blockSeqs : G . C . A T . . . . . .
blockSeqs : G . T . A T . . . . . .
blockSeqs : G . T . A T . . . . . .
blockSeqs : T . C . T C . . . . . .
blockSeqs : T . C . T C . . . . . .
blockSeqs : G . T . T T . . . . . .
blockSeqs : G . A . T T . . . . . .
blockSeqs : T . T . T C . . . . . .
blockSeqs : T . C . T A . . . . . .
blockSeqs : G . T . C C . . . .
blockSeqs : G . T . T T . . . .
blockSeqs : G . A . T T . . . .
blockSeqs : G . C . T T
blockSeqs : C . T . A
blockSeqs : A . A . A
blockSeqs : . T .
blockSeqCons :
originalCons : CATTTACACCATTGAGTGAACATG----TTAACGAAATCCGAAGA----TGGTATACTGGACACAANATTCTGTAAAACA-CGCTTTGATTCCAATATGTCTTCAAATC-GGCTTCCCATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC-AAAAACATT---AATTTTGTGACATTTA
finalCons : CATTTACACCATTGAGTGAACATG----TTAACGAAATCCGAAGA----TGGTATACTGGACACAANATTCTGTAAAACA-CGCTTTGATTCCAATATGTCTTCAAATC-GGCTTCCCATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC-AAAAACATT---AATTTTGTGACATTTA
Alignments
lowQualScore : 1 3333 0 3 3333 1 55 2 0 33 33 2 2 444
lowQualScore : . .... . . .... . .. . . .. .. . . ...
lowQualScore : 5 9999 6 4 9999 0 22 2 5 11 11 2 7 777
consensus : CATTTACACCATTGAGTGAACATG----TTAACGAAATCCGAAGA----TGGTATACTGGACACAANATTCTGTAAAACA-CGCTTTGATTCCAATATGTCTTCAAATC-GGCTTCCCATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC-AAAAACATT---AATTTTGTGACATTTA
Reference ( family-758 ) : CATTTACACCATTGAGTGAACATG----TTAACGAAATCCGAAGA----TGGTATACTGGACACAANATTCTGTAAAACA-CGCTTTGATTCCAATATGTCTTCAAATC-GGCTTCCCATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC-AAAAACATT---AATTTTGTGACATTTA
gi|62437 : CATTTACACCATTCAGTGAACATG----TTAACAAAATCAGAAGA----TGGTATACTGGACATAAAATTCTGTAAAACA-TGCTTTGATTCCAATATGCCTTCAAATC-GACTTCCCATTT--G--CTCTTCT-TTAATGACTAATTCCCAGCCATCTC-AAAAACATT---AATTTTGTGATATTTA
gi|62438 : CATTTACACCATTCAGTGAACATG----TTAACAAAATCAGAAGA----TGGTATACTGGACACAAAATTCTGTAAAAGAATGCTCTGATTCCAATTTGTCTTCAAATT-GACTTCCTATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC-AAAAACATT---AATTTTGTGACATT
gi|62439 : CATTTACACCATTCAGTAAACATG----TTAACTAAATCCAAAGA----TGGTATACTGGACACAAAATTCTGTAAAACA-TGCTTTGATTCCAATATGTCTTCAAATC-GACTTCCCATTT--GATCTTTTTT-TTAATGACTTATTCCCGGCCATCAC-AAAAACATT---AATTTTGTGACATTTA
gi|62440 : CATTTACACCATTGAGTGAATATG----TTAATGAAATCTCAAGA----TGGTATACTGGACACAAAATTCTGTAAAACA-TGCTTTGATTCCAATATGTCTTCAAATC-AACTTCCCATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCCAACTC-AAAAACATT---ATTTTTGTGACATTTA
gi|62441 : CATTTACACCATTGAGTGAA----------------ATCCGAAGA----TGGTATTCTGGACACAATATTCTGTAAAACA-TGCTTTAATTCCAATATGTCTTCAAATT-GACTTCCAATTT--G--CTCTTTT-TTAATGACTGATTCCCGGCTATCTC-AAAAACATT---AATTTTGTGATATTTA
gi|62442 : CATTTACATCATTCAGTGAACAAG----TTAACAAAATCAGAAGA----TGGTATACTGGACACAAAATCCTGTAAAACA-TGCTTTGATTCCAATTTGTTTTCAAATC-GACTTCCCATTT--G--CTCTTTT-TTAATGAATGATTCCCGGCCA-------------T---AATTTTGTTACATTTA
gi|62443 : CATTTACACCACTGAGTGAACATG----TTTATGAAATTCGAAGA----TGGTATACTGAACACAAAATTCTGTAAAACA-TGCTTTAATTCGAATATATCTTCAAATT-GACTTCCCATTT--G--CTCCTTT-TTGATGACTGATTTCAGGCCATCTC-AAAAATATT---AAATTTGTGAAATTTA
gi|62444 : CATTTAAACCATTGAGTGAATATG----TTAA-GAAATCTCAAGA----TG-TATACTTGTCACAAAATTCTGTAAAACA-TGCTTTGTTTTCAATATGTCTTCAAATC-GACACCCCATTT--G--CTC-TTT-TAAATGACTTATTCCCAGCCATCTC-AAAAACATT---AATTTTGTGACATTTA
gi|62445 : CATTTACACCATTGAACAAATGTG----TTAACAAAATCTCAAGA----TG-TATACTTGACACAAAATTCTGTAAAACA-TGCTTTGATTCTAAT--GTCTTCAAATC-GGTTTGC-ATTA--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC-AAAACCATT---AATTTTTTTACATTTA
gi|62446 : CGTTTACACCATTTAGTGTACATG----TCAACGAAATCCGAAGA----TGGTATGCTGGACACAATATTCTGCAAAGCA-CATTTTAATTCAGATATGTCTTCAAATA-GGCGCCCTCTAA--G--TTCTTTT-TTAATG
gi|62447 : CGTTTACACCATTTAGTGTACATG----TCAACGAAATCCGAAGA----TGGTATGCTGGACACAATATTCTGCAAAGCA-CATTTTAATTCAGATATGTCTTCAAATA-GGCGCCCTCTAA--G--TTCTTTT-TTAATG
gi|62448 : CGTTTAAACCATTGAGTGAACATG----TAAACTAAATCTGAAGA----TGGTATACTGGACACAATATTCTGTAAAGAA-TATTTTAGTTCCATTTTTTTTTCAAATCTTGC-CCCCA-GA--G--TTCTTTT-TTAATGACTGATTCCTGGCCATCTC-GAAAATATT---
gi|62449 : CATTTACACCATTGAGTAAACATG----TCAACGAAATCAGAAGA----TGGTATATTGGACACAATATTCTGTGAAACA-TGTTTTAATTCCAACATAT
gi|62450 : CAATTACACCATTTAGTGTACATA----TAAATGAAATCTGAAGA----TGGTATGCTGGACACAATATTCTGTAAAGCA-CATTTTAGTTCTGCTATGTCTTCAAATC-GG-TGCCC-TCTAAG--TTCTTTT-TTAATG
gi|62451 : CGTTTACACCATTTAGTGTACATG----TAAACGAAATCCGAAGA----TGGTATGCTGGACACAATATTCTGCAAAGCA-AAGTTTAATTCCGTTATGTCTTTTAAT
gi|62452 : CATTTACACCATTGAGTGAACATG----TGAATGAAATCTGAAGATGGCTGGTACGCTGGAAACAACATTCTGCACAGCA-CAATTTAATTCCAATATGTTTTCAAACC-TGCTT
gi|62453 : CATTTACACTATTGAGTGAACATG----TTAACGAAATCTGAAGA----TGGTATACTGGACA
gi|62454 : CATTTACACCATTGAGTGAACATG----TTAACGAAATCAAAAGA----TGGTATACTTGACACAATGCTCT
gi|62454 : T--G--CTCTTTT-TTAATGACTGATTCCCGGCCATCTC-AAAAAAATTGTCACTTTTGTGACATTTAtttttaatgactgattcccggccatctcaaaaaaattgtcacttttgtgacattta
gi|62455 : catttacaccattgagtgaacatgttaacgaaatcaaaagatggtatacttgacacaaATTTACAACATTGAGTGAACATGCATGTAAACGAAATCCGAAGA----TGGTATACTGGAAACAATATCCTGTAAAGCA-TGCTTTAATTCCAATACGTCTTCAAAGC-GGCGTCGCATTT--T--TCCTTCTATTAATGAGTGATCCTCGGCACTCTCAAAAAACATT---
gi|62456 : TTTTCACCATTCAGTGAATATG----TCAACGAGATCTGAAGA----TGGTATGCTTGATACAATATTC-GTAA
gi|62457 : CTATTAAGTTTAC-TA----TTAATAAAATCAGAAGA----TGGTATACTGGACACAAAATTCTTTAAAACA-TGCTTTGATTCCAATATGTCTTCAAATC-GACTTCCCATTT--G--CTCTTTC-TTAATGACTGATTCCCTGCCATCTC-AAAAACATT---AATTTTATGACATTTA
gi|62458 : ATATG----TTAACGAAATCTCAAGA----TGGTATACTGGACACAAAATTCTGTAAAACA-TGCTTTGATTCCAATATGTCTTCAAATC-AACTTCCCATTT--G--CTCTTTT-TTAATGACTGATTCCCAGCCGTCTC-AAAAACATT---AATTTTGTGACATTTA
gi|62459 : ATTCCAACGTGTCTTCAAATC-AGCGTCCTATTT--G--TTCTTTT-TTCATGACCGATTCCTGATCATCTC-AAAAACA--------TTTGTGACATTCA