lowQualScore : 4444 6 2 4 8888 4 2 2 6 5
lowQualScore : .... . . . .... . . . . .
lowQualScore : 5555 3 0 0 2222 0 0 0 9 3
consensus : TAGGGCTGTGCATTGGCA----T-T-T-T----T-T-C-ATCTGCGATGCGTATCGCGATACTTCATTTTCAGAACGATACGTA
Reference ( gi|143741 ) : TAGGGCTGTGCATTGGCA----T-T-T-T----T-T-C-ATCTACGATACGTATCGCGATACTTCATTTTCAGAACGATACGTA
gi|143745 : TAGGGCTGTGCATTGGCA----T-T-T-T----T-T-CCATCTGCGATATGTATCGCGATACATCATTTTCAGAATGATACGTA
gi|143743 : TAGGACTGTGCATTGGCA----T-T-TCT----T-T-C-ATCTGCGATGTGTATCACAATACTTCATTTTCAGAACGATACGTAt
gi|143746 : TAGGGCTGTACATTGGCA----TGT-T-T----T-T-C-ATCTGCGATGCGTATTGCGATATTTTATTTCCAGAACGATACGTAt
gi|143744 : TAGGGCTGTGCATTGGCA----T-T-T-TT---T-T-C-ATCTGCGATGCGTATCGCCATATTTCACTTTCAAAACGATACATAt
gi|143748 : TAGGGCTGCGTAT-GGCA----T-T-T-T----T-C-C-ATCTGCCATGCGTATCGCGATACTTCATTTTCAGGACGATACGTAt
gi|143747 : TAGGGCTGTGCATTGGCA----T-T-T-TT---T-T-C-ATCTGCTATGCGTATCGTGATACTTTATTTTCCGGATGATATGTAt
gi|143749 : TAAGGCTTTGCCTTGGCA----T-T-T-T----TCT-C-ATCTCTGATGCTTATCGCAATACTTCATTTTCAGAACGATACGTAt
gi|143742 : TGGGGCTGTGCATTGGCT----A-T-T-T----T-T-C-ATCAGCAATGCATATTGTGATATTTCATTTTCAGAACGATACGTAt
gi|143752 : TAGGACTGTGCATTGGCA----T-T-T-T----T-T-C-ATC-----TGCGTTTTGTGATACTTCATTTTCAGAACAATATGTAt
gi|143751 : TGGGGCTGTGCATTGGCG----T-T-T-T----T-T-C-ATTGGCGTTGCATATCGCGTTACTTCATTTTCAGAATGA-ATGTAt
gi|143750 : TAGGGCAGTGCCTTGGCC----T-T-TGT----T-T-C-ACCTGCGATGCATATCACTATACTTCATTTTCAGAACAATACATAt
gi|143753 : TAGGTCTGTGCATTGCCA----T-T-T-TTTTTT-T-C-ATCTGCGATGCGTATCGCG-------ATTTTCAGAACGATACATAt
gi|143754 : TAGGGCTGTGCATCGGCA----T-T-T-T----TCT-C-ATCAGCGACGTGTATCGCACTACTTCATTTTTAGAA-AATAGGTAt
gi|143755 : TAGGTCTGTGCATTGCCACTTTT-T-T-T----T-T-T-ATCTGCGATGCGTATCGCG-------ATTTTCAGAACGATACATAt
gi|143756 : TAGGGCTGTGCATTGGCA----T-T-T-T----T-----ATATGCGCTGCGTATCGCGATACTTCATAATAAGAGCGTTAt
gi|143757 : TAGGGCTGTGCATTGGCA----TATAT-T----T-T-C-ATCTGCGATGCATATCGCA------------CAGAACGATTCGTAtttat
gi|143759 : TAGAGCTGTGTATTGGCA----TCT-T-T----T-T-C-ATATGCAATGCGTATCAAGATACt
gi|143758 : TAGAACTGTGCATTAGCA----T-T-T-T----T-TTC-ATATGCCATGCGTATCACGATAC
gi|143760 : GCTGTACATTGGCA----G-T-T-T----T-T-C-ATCTGCGTTGCATATCGCGATACTTCAGTTTCAGAACGATACGTA
gi|143761 : -T-T----T-T-C-ATCTGCAATGTGTATCACGATACTTTATTATCAGAACAATGCGTAt
gi|143763 : cattaaggcctcttgTGCATATTGCGATACTTCATTTTCAGAACGATATATAt
gi|143762 : TATTGGGATACTTCATTTTCAGAATGATACGTAt
Alignments
lowQualScore : 4444 6 1 3 7777 3 1 1
lowQualScore : .... . . . .... . . .
lowQualScore : 2222 0 9 8 9999 8 9 9
consensus : TAGGGCTGTGCATTGGCA----T-T-T-T----T-T-C-ATCTGCGATGCGTATCGCGATACTTCATTTTCAGAACGATACGTA
Reference ( family-756 ) : TAGGGCTGTGCATTGGCA----T-T-T-T----T-T-C-ATCTGCGATGCGTATCGCGATACTTCATTTTCAGAACGATACGTA
gi|143741 : TAGGGCTGTGCATTGGCA----T-T-T-T----T-T-C-ATCTACGATACGTATCGCGATACTTCATTTTCAGAACGATACGTA
gi|143742 : TGGGGCTGTGCATTGGCT----A-T-T-T----T-T-C-ATCAGCAATGCATATTGTGATATTTCATTTTCAGAACGATACGTA
gi|143743 : TAGGACTGTGCATTGGCA----T-T-TCT----T-T-C-ATCTGCGATGTGTATCACAATACTTCATTTTCAGAACGATACGTAt
gi|143744 : TAGGGCTGTGCATTGGCA----T-T-T-TT---T-T-C-ATCTGCGATGCGTATCGCCATATTTCACTTTCAAAACGATACATAt
gi|143745 : TAGGGCTGTGCATTGGCA----T-T-T-T----T-T-CCATCTGCGATATGTATCGCGATACATCATTTTCAGAATGATACGTAt
gi|143746 : TAGGGCTGTACATTGGCA----TGT-T-T----T-T-C-ATCTGCGATGCGTATTGCGATATTTTATTTCCAGAACGATACGTAt
gi|143747 : TAGGGCTGTGCATTGGCA----T-T-T-TT---T-T-C-ATCTGCTATGCGTATCGTGATACTTTATTTTCCGGATGATATGTAt
gi|143748 : TAGGGCTGCGTAT-GGCA----T-T-T-T----T-C-C-ATCTGCCATGCGTATCGCGATACTTCATTTTCAGGACGATACGTAt
gi|143749 : TAAGGCTTTGCCTTGGCA----T-T-T-T----TCT-C-ATCTCTGATGCTTATCGCAATACTTCATTTTCAGAACGATACGTAt
gi|143750 : TAGGGCAGTGCCTTGGCC----T-T-TGT----T-T-C-ACCTGCGATGCATATCACTATACTTCATTTTCAGAACAATACATAt
gi|143751 : TGGGGCTGTGCATTGGCG----T-T-T-T----T-T-C-ATTGGCGTTGCATATCGCGTTACTTCATTTTCAGAATGA-ATGTAt
gi|143752 : TAGGACTGTGCATTGGCA----T-T-T-T----T-T-C-ATC-----TGCGTTTTGTGATACTTCATTTTCAGAACAATATGTAt
gi|143753 : TAGGTCTGTGCATTGCCA----T-T-T-TTTTTT-T-C-ATCTGCGATGCGTATCGCG-------ATTTTCAGAACGATACATAt
gi|143754 : TAGGGCTGTGCATCGGCA----T-T-T-T----TCT-C-ATCAGCGACGTGTATCGCACTACTTCATTTTTAGAA-AATAGGTAt
gi|143755 : TAGGTCTGTGCATTGCCACTTTT-T-T-T----T-T-T-ATCTGCGATGCGTATCGCG-------ATTTTCAGAACGATACATAt
gi|143756 : TAGGGCTGTGCATTGGCA----T-T-T-T----T-----ATATGCGCTGCGTATCGCGATACTTCATAATAAGAGCGTTAt
gi|143757 : TAGGGCTGTGCATTGGCA----TATAT-T----T-T-C-ATCTGCGATGCATATCGCA------------CAGAACGATTCGTAtttat
gi|143758 : TAGAACTGTGCATTAGCA----T-T-T-T----T-TTC-ATATGCCATGCGTATCACGATACt
gi|143759 : TAGAGCTGTGTATTGGCA----TCT-T-T----T-T-C-ATATGCAATGCGTATCAAGATAC
gi|143760 : GCTGTACATTGGCA----G-T-T-T----T-T-C-ATCTGCGTTGCATATCGCGATACTTCAGTTTCAGAACGATACGTA
gi|143761 : -T-T----T-T-C-ATCTGCAATGTGTATCACGATACTTTATTATCAGAACAATGCGTAt
gi|143762 : cattaaggcctcttgTATTGGGATACTTCATTTTCAGAATGATACGTAt
gi|143763 : taactctgaagtgaTGCATATTGCGATACTTCATTTTCAGAACGATATATAt
Alignments
lowQualScore : 4444 6 1 3 7777 3 1 1
lowQualScore : .... . . . .... . . .
lowQualScore : 2222 0 9 8 9999 8 9 9
consensus : TAGGGCTGTGCATTGGCA----T-T-T-T----T-T-C-ATCTGCGATGCGTATCGCGATACTTCATTTTCAGAACGATACGTA
Reference ( family-756 ) : TAGGGCTGTGCATTGGCA----T-T-T-T----T-T-C-ATCTGCGATGCGTATCGCGATACTTCATTTTCAGAACGATACGTA
gi|143741 : TAGGGCTGTGCATTGGCA----T-T-T-T----T-T-C-ATCTACGATACGTATCGCGATACTTCATTTTCAGAACGATACGTA
gi|143742 : TGGGGCTGTGCATTGGCT----A-T-T-T----T-T-C-ATCAGCAATGCATATTGTGATATTTCATTTTCAGAACGATACGTA
gi|143743 : TAGGACTGTGCATTGGCA----T-T-TCT----T-T-C-ATCTGCGATGTGTATCACAATACTTCATTTTCAGAACGATACGTAt
gi|143744 : TAGGGCTGTGCATTGGCA----T-T-T-TT---T-T-C-ATCTGCGATGCGTATCGCCATATTTCACTTTCAAAACGATACATAt
gi|143745 : TAGGGCTGTGCATTGGCA----T-T-T-T----T-T-CCATCTGCGATATGTATCGCGATACATCATTTTCAGAATGATACGTAt
gi|143746 : TAGGGCTGTACATTGGCA----TGT-T-T----T-T-C-ATCTGCGATGCGTATTGCGATATTTTATTTCCAGAACGATACGTAt
gi|143747 : TAGGGCTGTGCATTGGCA----T-T-T-TT---T-T-C-ATCTGCTATGCGTATCGTGATACTTTATTTTCCGGATGATATGTAt
gi|143748 : TAGGGCTGCGTAT-GGCA----T-T-T-T----T-C-C-ATCTGCCATGCGTATCGCGATACTTCATTTTCAGGACGATACGTAt
gi|143749 : TAAGGCTTTGCCTTGGCA----T-T-T-T----TCT-C-ATCTCTGATGCTTATCGCAATACTTCATTTTCAGAACGATACGTAt
gi|143750 : TAGGGCAGTGCCTTGGCC----T-T-TGT----T-T-C-ACCTGCGATGCATATCACTATACTTCATTTTCAGAACAATACATAt
gi|143751 : TGGGGCTGTGCATTGGCG----T-T-T-T----T-T-C-ATTGGCGTTGCATATCGCGTTACTTCATTTTCAGAATGA-ATGTAt
gi|143752 : TAGGACTGTGCATTGGCA----T-T-T-T----T-T-C-ATC-----TGCGTTTTGTGATACTTCATTTTCAGAACAATATGTAt
gi|143753 : TAGGTCTGTGCATTGCCA----T-T-T-TTTTTT-T-C-ATCTGCGATGCGTATCGCG-------ATTTTCAGAACGATACATAt
gi|143754 : TAGGGCTGTGCATCGGCA----T-T-T-T----TCT-C-ATCAGCGACGTGTATCGCACTACTTCATTTTTAGAA-AATAGGTAt
gi|143755 : TAGGTCTGTGCATTGCCACTTTT-T-T-T----T-T-T-ATCTGCGATGCGTATCGCG-------ATTTTCAGAACGATACATAt
gi|143756 : TAGGGCTGTGCATTGGCA----T-T-T-T----T-----ATATGCGCTGCGTATCGCGATACTTCATAATAAGAGCGTTAt
gi|143757 : TAGGGCTGTGCATTGGCA----TATAT-T----T-T-C-ATCTGCGATGCATATCGCA------------CAGAACGATTCGTAtttat
gi|143758 : TAGAACTGTGCATTAGCA----T-T-T-T----T-TTC-ATATGCCATGCGTATCACGATACt
gi|143759 : TAGAGCTGTGTATTGGCA----TCT-T-T----T-T-C-ATATGCAATGCGTATCAAGATAC
gi|143760 : GCTGTACATTGGCA----G-T-T-T----T-T-C-ATCTGCGTTGCATATCGCGATACTTCAGTTTCAGAACGATACGTA
gi|143761 : -T-T----T-T-C-ATCTGCAATGTGTATCACGATACTTTATTATCAGAACAATGCGTAt
gi|143762 : cattaaggcctcttgTATTGGGATACTTCATTTTCAGAATGATACGTAt
gi|143763 : taactctgaagtgaTGCATATTGCGATACTTCATTTTCAGAACGATATATAt
blockSeqs : CTTT G A C TTTT C T C
blockSeqs : . A . G T C . .
blockSeqs : . C . . T . . .
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blockSeqs : . . . . . . . .
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blockSeqs : . . . . . . . .
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blockSeqs : . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons :
originalCons : TAGGGCTGTGCATTGGCA----T-T-T-T----T-T-C-ATCTGCGATGCGTATCGCGATACTTCATTTTCAGAACGATACGTA
finalCons : TAGGGCTGTGCATTGGCA----T-T-T-T----T-T-C-ATCTGCGATGCGTATCGCGATACTTCATTTTCAGAACGATACGTA
Alignments
lowQualScore : 4444 6 1 3 7777 3 1 1
lowQualScore : .... . . . .... . . .
lowQualScore : 2222 0 9 8 9999 8 9 9
consensus : TAGGGCTGTGCATTGGCA----T-T-T-T----T-T-C-ATCTGCGATGCGTATCGCGATACTTCATTTTCAGAACGATACGTA
Reference ( family-756 ) : TAGGGCTGTGCATTGGCA----T-T-T-T----T-T-C-ATCTGCGATGCGTATCGCGATACTTCATTTTCAGAACGATACGTA
gi|143741 : TAGGGCTGTGCATTGGCA----T-T-T-T----T-T-C-ATCTACGATACGTATCGCGATACTTCATTTTCAGAACGATACGTA
gi|143742 : TGGGGCTGTGCATTGGCT----A-T-T-T----T-T-C-ATCAGCAATGCATATTGTGATATTTCATTTTCAGAACGATACGTA
gi|143743 : TAGGACTGTGCATTGGCA----T-T-TCT----T-T-C-ATCTGCGATGTGTATCACAATACTTCATTTTCAGAACGATACGTAt
gi|143744 : TAGGGCTGTGCATTGGCA----T-T-T-TT---T-T-C-ATCTGCGATGCGTATCGCCATATTTCACTTTCAAAACGATACATAt
gi|143745 : TAGGGCTGTGCATTGGCA----T-T-T-T----T-T-CCATCTGCGATATGTATCGCGATACATCATTTTCAGAATGATACGTAt
gi|143746 : TAGGGCTGTACATTGGCA----TGT-T-T----T-T-C-ATCTGCGATGCGTATTGCGATATTTTATTTCCAGAACGATACGTAt
gi|143747 : TAGGGCTGTGCATTGGCA----T-T-T-TT---T-T-C-ATCTGCTATGCGTATCGTGATACTTTATTTTCCGGATGATATGTAt
gi|143748 : TAGGGCTGCGTAT-GGCA----T-T-T-T----T-C-C-ATCTGCCATGCGTATCGCGATACTTCATTTTCAGGACGATACGTAt
gi|143749 : TAAGGCTTTGCCTTGGCA----T-T-T-T----TCT-C-ATCTCTGATGCTTATCGCAATACTTCATTTTCAGAACGATACGTAt
gi|143750 : TAGGGCAGTGCCTTGGCC----T-T-TGT----T-T-C-ACCTGCGATGCATATCACTATACTTCATTTTCAGAACAATACATAt
gi|143751 : TGGGGCTGTGCATTGGCG----T-T-T-T----T-T-C-ATTGGCGTTGCATATCGCGTTACTTCATTTTCAGAATGA-ATGTAt
gi|143752 : TAGGACTGTGCATTGGCA----T-T-T-T----T-T-C-ATC-----TGCGTTTTGTGATACTTCATTTTCAGAACAATATGTAt
gi|143753 : TAGGTCTGTGCATTGCCA----T-T-T-TTTTTT-T-C-ATCTGCGATGCGTATCGCG-------ATTTTCAGAACGATACATAt
gi|143754 : TAGGGCTGTGCATCGGCA----T-T-T-T----TCT-C-ATCAGCGACGTGTATCGCACTACTTCATTTTTAGAA-AATAGGTAt
gi|143755 : TAGGTCTGTGCATTGCCACTTTT-T-T-T----T-T-T-ATCTGCGATGCGTATCGCG-------ATTTTCAGAACGATACATAt
gi|143756 : TAGGGCTGTGCATTGGCA----T-T-T-T----T-----ATATGCGCTGCGTATCGCGATACTTCATAATAAGAGCGTTAt
gi|143757 : TAGGGCTGTGCATTGGCA----TATAT-T----T-T-C-ATCTGCGATGCATATCGCA------------CAGAACGATTCGTAtttat
gi|143758 : TAGAACTGTGCATTAGCA----T-T-T-T----T-TTC-ATATGCCATGCGTATCACGATACt
gi|143759 : TAGAGCTGTGTATTGGCA----TCT-T-T----T-T-C-ATATGCAATGCGTATCAAGATAC
gi|143760 : GCTGTACATTGGCA----G-T-T-T----T-T-C-ATCTGCGTTGCATATCGCGATACTTCAGTTTCAGAACGATACGTA
gi|143761 : -T-T----T-T-C-ATCTGCAATGTGTATCACGATACTTTATTATCAGAACAATGCGTAt
gi|143762 : cattaaggcctcttgTATTGGGATACTTCATTTTCAGAATGATACGTAt
gi|143763 : taactctgaagtgaTGCATATTGCGATACTTCATTTTCAGAACGATATATAt