lowQualScore : 11 111111111 22222 11111111111 1111111 11 1111 1111 1
lowQualScore : 3 77777 22 1 22 7777 444444444 5 2 3 2 22222 2 1 11111111111 33 88 5555555 3 11 6666 0000 5 7 2 5 1 4 9
lowQualScore : . ..... .. . .. .... ......... . . . . ..... . . ........... .. .. ....... . .. .... .... . . . . . . .
lowQualScore : 3 00000 55 8 00 7777 777777777 7 2 4 4 44444 2 6 99999999999 44 88 5555555 2 11 6666 6666 0 0 2 0 6 0 6
consensus : TATCGAGGGCTCGGCGCAAAACT-----AT--T-GTAACTANGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-GATAT------TTTTTGCTAATA---NTTTTCAAA----ATTCAAATGAA-AACTGCATTACTTACANTATTAACAAGTGTTATCAATT-AAAGCTTTAGTATAACTTGATTTATTTGTAAA
Reference ( gi|15124 ) : TGTCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACTAAGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-GATAT------TTTTTGCAAATA---GTTTTCAAA----ATTCAAATGAA-AACTGCATTACTTACATTATTAACAAGTGTTATCAATT-AAATCTTTAGTATTACTTGATTTATTTGTAAA
gi|15123 : TATCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACTAGGT----TGTT---GC---AA-ATTGTTCAGG-AGGAGGAAAAAA-C-TGTTTTTTATTTTA----G----T--CTTTA-TATAT------TTTT-GCTAATA---GTTTTCAAA----ATTCAAATGAA-AACTGCATTACTTACAATATTAACAAGTGTTATTAATT-AAAGCTTTAATATAACTTGATTTATTTGTAAA
gi|15121 : TATCGAAGGCTTGGTGCAAAACT-----AT--T-GTAACTAGGT----TTTT---GC---AA-ATTGTTCAGG-AGGAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-AATA-------TTTTTGCTAATA---TTTTTCAAA----ATTCAAATGAA-AACTGCATATCTTGCAGTATTAACAAGTGTTATCAATT-AAAGCTTTAATATAACTTGATTTATTTGTAAA
gi|15125 : TATCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACTAGGT----TTTT---GC---AA-ATTGTTCAGG-AGGATGAAAAAA-A-TTTTTTTTATTTTC----T----T--TTCAA-GATA-------TTTTTGCTAATA---TTTTTCAAA----ATTTAAATGGA-AACTGCATTTCTTACAATATTAACAAGGGTTATTAATTGAAGTTTTTA-TACAACTTGATTTATTTGTAAA
gi|15126 : TATCGAGGGCTTGGCGCATAACT-----AT--T-GTAACTAGGT----TTTT---GC---AA-ATTGTTCATG-AGGAG-AAAAAA-C-TGTTTT-------C----T----T--CTTAA-GATATATTTACTTTTT-----------TTTTCAAA----ATTCAAATGAA-AACTGCAATACTTACAATATTAACAAGTGTTATAAATT-AAAGCTTTAATATAACAAGATTAATTTGTAAA
gi|15127 : TGTCGAGGGCCGAGGGCAAAACT-----AT--T-GTAACTACAT----TTT-----C---AACATTTTTCAGG-AGAAGGAAAAAA-C----CTTTAATTT------T----T--TTTTA--ATAT------
gi|15128 : TGTCGAGGGCTTGGTGCGAAATG-----GT--T-GTAACTCAGT----ATTC---CT---AA-ATTGTTCAGG-AAAGACAAAAAA-CTTGTTTaggctcaattaaaacagtctcttcatctacttgtgctaaattttaaaataaataataaacacatt
gi|15130 : TATCGAGTGCTTGGTGCGAAACG-----GT--T-GTAACTCAAT----ATTC---CT---AA-ATTGTTCAGG-AAAGACAAAAAA-C---TTCTTCA---------T----T--CTTT----TAT------TTTTTG
gi|15129 : TATCGAGGGCTCGGCGCAAGACT-----AT--T-CTAACTGACA----TTTC---AG---AA-ATTTTACAGG-AGGTGGAAAAAA-C-ATTTTTTTAGTTTCAATAT----TGGCTTTATAATATTG----TCTTTTCATATACACATCTTAAAACACCATATAAATAAACAAAGACATCA-GTATGTCAT---CAAATGTAATTAATT-ttcatatttattgtcttaagactattattttcaa
gi|15131 : TATCGATGGCTTGGTGCAAGACTGGACCAT--TAGTCACT--------TTTT---GA---GA-ATTGTTCAGG-AGAAGCAAAAAA-------TTTAATTTAC----A----T--TTTTA-ttgatttta
gi|15132 : TATCGATGGCTTGACGCAAGACTGG---ACCAT-GTAACT--------TTTT---GA---AA-ATTGTCAAGG-AGAAG--CAAAA-C-CG-----GATTATT----T----T--CTTTA--ATAT------TT
gi|15133 : TATCGATGACTTGGCGCAAGACT-----G-------GACCAAGTCACTTTTT---GA---AA-ATTGTTCAGG-AGAAGCAATAA
gi|15134 : TATCGAGGGCCGAGCGCAAAATT-----AC------------AT----TTT-----C---AACATTTTTCAGA-AGAAGGAAAAAA-C---CTTTTAATTTTT----T----T--
gi|15138 : TCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACTAGGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATATTC----G----T--CTTTA-GATAT------TTTT-GCAAAAA---GTTTTCAAA----ATTCAAATGAA-AACTGCATTACTTACATTATTAACAAGTGTTATCAATT-AAAGTTTTAGTATTACTTGATTTATTTGTAAA
gi|15140 : TCGAGGGCCGAGCGCAAAACT-----TT--T-CTAACTACAT----TTT-----C---AACATTTTTCAGG-AGAAGGAAAAAA-C----CTTTTATTTTT----T----T--
gi|15136 : TCGAGGGCTCAACACAAAACT-----GT--C-GTTACTCCAT----TTTT---CA---AA-ATTGTTCAAGCAGAAGGAAAAAA-C-T-TAATTTA-TTTG----T----T--TTTTA-TATAT------
gi|15141 : aTCGAGGGCCGAGCGCAAAACT-----AT--T-CTAACTACAT----T------------------TTCAGG-AGAAGGAAAAAACC-TG---TTCATTTT-----T----T--TTTTA-G-TAT------T
gi|15142 : TCGATGGCTTAGCGCAAGACT-----G-------GACCAAGTCACTTTTT---AA---AA-ATTGTTCAGG-AAAAGCAAAGAA-C-TG---ATTATATTC----TGTTAT--ATTTG-GATAggctcaaaa
gi|15139 : TCGAGGGCTCAGCGCAACACT-----AT--T-GTAACTCCGT----TTTT---TCCAAAA-ATCGTT
gi|15137 : TCGAGGGCTCAGCGCAACACT-----AT--T-GTAACTCCGT----TTTT---TCCAAAA-ATCGTT
gi|15135 : aTCGAGGGCTCAGCGCAACACT-----AT--T-GTAACTCCGT----TTTTTTCAA---AA-ATCGTT
gi|15122 : aCGAGGGCTCAGCGCAAAACT-----AT--T-GTAACTCTGT----TTTT---
gi|15143 : tacGCTTGGTGCAAAACT-----AT--T-GTAATTAGGT----TTTT---GC---AA-ATTGTTCAG---GAAGAAAA--------------------------------CTTTA-GA-AA------GTTTTGCTTATA---TGTTTCACA----ATTCAAATGGA-AAATGAATTACTTACAATATTAACAAGTGTT-------------TTT-GTACAACTTGATTTATTTGTAAA
gi|15144 : ----ATTCAAATGAA-AACTGCATTACTTACATTATTAACAAGTGTTATCAATT-AAAGCTTTAGTATTACTTGAATTATTTGTAAA
Alignments
lowQualScore : 111111111 11111 11 11111
lowQualScore : 3 66666 22 1 777 7777 333333333 5 2 1 2 99999 1 1 9999999999 33 77 555 22 4 2 66 11111 4 1 0 0 0
lowQualScore : . ..... .. . ... .... ......... . . . . ..... . . .......... .. .. ... .. . . .. ..... . . . . .
lowQualScore : 4 77777 44 7 666 4444 666666666 5 1 8 2 11111 6 0 9999999999 22 55 888 99 0 4 11 11111 4 0 9 4 8
consensus : TATCGAGGGCTCGGCGCAAAACT-----AT--T-GTAACT-ACGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-GATATT---TTTTGCTA-ATATTTTTCA--AAATTC-----AAATGAA-AACTGCATTACTTACAATATTAACAAGTGTTATCAATTAAAGCTTTAGTATAACTTGATTTATTTGTAAA
Reference ( family-748 ) : TATCGAGGGCTCGGCGCAAAACT-----AT--T-GTAACT-ANGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-GATATT---TTTTGCTA-ATANTTTTCA--AAATTC-----AAATGAA-AACTGCATTACTTACANTATTAACAAGTGTTATCAATTAAAGCTTTAGTATAACTTGATTTATTTGTAAA
gi|15121 : TATCGAAGGCTTGGTGCAAAACT-----AT--T-GTAACT-AGGT----TTTT---GC---AA-ATTGTTCAGG-AGGAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-AATATT---TT-TGCTA-ATATTTTTCA--AAATTC-----AAATGAA-AACTGCATATCTTGCAGTATTAACAAGTGTTATCAATTAAAGCTTTAATATAACTTGATTTATTTGTAAA
gi|15122 : TACCGAGGGCTCAGCGCAAAACT-----AT--T-GTAACT-CTGT----TTTT---
gi|15123 : TATCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACT-AGGT----TGTT---GC---AA-ATTGTTCAGG-AGGAGGAAAAAA-C-TGTTTTTTATTTTA----G----T--CTTTA-TATATT---TT-TGCTA-ATAGTTTTCA--AAATTC-----AAATGAA-AACTGCATTACTTACAATATTAACAAGTGTTATTAATTAAAGCTTTAATATAACTTGATTTATTTGTAAA
gi|15124 : TGTCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACT-AAGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-GATATT---TTTTGCAA-ATAGTTTTCA--AAATTC-----AAATGAA-AACTGCATTACTTACATTATTAACAAGTGTTATCAATTAAATCTTTAGTATTACTTGATTTATTTGTAAA
gi|15125 : TATCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACT-AGGT----TTTT---GC---AA-ATTGTTCAGG-AGGATGAAAAAA-A-TTTTTTTTATTTTC----T----T--TTCAA-GATATT---TT-TGCTA-ATATTTTTCA--AAATTT-----AAATGGA-AACTGCATTTCTTACAATATTAACAAGGGTTATTAATTGAAGTTTTTATACAACTTGATTTATTTGTAAA
gi|15126 : TATCGAGGGCTTGGCGCATAACT-----AT--T-GTAACT-AGGT----TTTT---GC---AA-ATTGTTCATG-AGGAG-AAAAAA-C-TGTTTT-------C----T----T--CTTAA-GATATA---TTT-ACTT-TT-TTTTTCA--AAATTC-----AAATGAA-AACTGCAATACTTACAATATTAACAAGTGTTATAAATTAAAGCTTTAATATAACAAGATTAATTTGTAAA
gi|15127 : TGTCGAGGGCCGAGGGCAAAACT-----AT--T-GTAACT-ACAT----TTT-----C---AACATTTTTCAGG-AGAAGGAAAAAA-C----CTTTAATTT------T----T--TTTTA--ATAT
gi|15128 : TGTCGAGGGCTTGGTGCGAAATG-----GT--T-GTAACT-CAGT----ATTC---CT---AA-ATTGTTCAGG-AAAGACAAAAAA-CTTGTTTaggctcaattaaaacagtctcttcatctacttgtgctaaattttaaaataaataataaacacatt
gi|15129 : TATCGAGGGCTCGGCGCAAGACT-----AT--T-CTAACTGACAT----TTCA---G----AA-ATTTTACAGG-AGGTGGAAAAAA-C-ATTTTTTTAGTTTCAATAT----TGGCTTTATAATATTGTCTTTTCATATACACATCTTA--AAACACCATATAAATAAACAAAGACATCAGT----ATGTCATCAAATGTAATTAATT
gi|15130 : TATCGAGTGCTTGGTGCGAAACG-----GT--T-GTAACT-CAAT----ATTC---CT---AA-ATTGTTCAGG-AAAGACAAAAAA-C---TTCTTCA---------T----T--CTTT----TATT---TTTTGTTC-ATATTTttgatttta
gi|15131 : TATCGATGGCTTGGTGCAAGACTGGACCAT--TAGTCACT---------TTTT---GA---GA-ATTGTTCAGG-AGAAGCAAAAAA-------TTTAATTTAC----A----T--TTTTA-attgtcttaagactattattttcaa
gi|15132 : TATCGATGGCTTGACGCAAGACTGG---ACCAT-GTAACT---------TTTT---GA---AA-ATTGTCAAGG-AGAAG--CAAAA-C-CG-----GATTATT----T----T--CTTTA--ATATT---T
gi|15133 : TATCGATGACTTGGCGCAAGACT-----G-------GACC-AAGTCACTTTTT---GA---AA-ATTGTTCAGG-AGAAGCAATAA
gi|15134 : TATCGAGGGCCGAGCGCAAAATT-----A-------------CAT----TTT-----C---AACATTTTTCAGA-AGAAGGAAAAAA-C---CTTTTAATTTTT----T----T--
gi|15135 : ATCGAGGGCTCAGCGCAACACT-----AT--T-GTAACT-CCGT----TTTTTTCAA---AA-ATCGTT
gi|15136 : ATCGAGGGCTCAACACAAAACT-----GT--C-GTTACT-CCAT----TTTT---CA---AA-ATTGTTCAAGCAGAAGGAAAAAA-C-T-TAATTTA-TTTG----T----T--TTTTA-TATAT
gi|15137 : ATCGAGGGCTCAGCGCAACACT-----AT--T-GTAACT-CCGT----TTTT---TCCAAAA-ATCGTT
gi|15138 : TCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACT-AGGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATATTC----G----T--CTTTA-GATATT---TTT-GCAA-AAAGTTTTCA--AAATTC-----AAATGAA-AACTGCATTACTTACATTATTAACAAGTGTTATCAATTAAAGTTTTAGTATTACTTGATTTATTTGTAAA
gi|15139 : TCGAGGGCTCAGCGCAACACT-----AT--T-GTAACT-CCGT----TTTT---TCCAAAA-ATCGTT
gi|15140 : TCGAGGGCCGAGCGCAAAACT-----TT--T-CTAACT-ACAT----TTT-----C---AACATTTTTCAGG-AGAAGGAAAAAA-C----CTTTTATTTTT----T----T--
gi|15141 : TCGAGGGCCGAGCGCAAAACT-----AT--T-CTAACT-ACAT----T------------------TTCAGG-AGAAGGAAAAAACC-TG---TTCATTTT-----T----T--TTTTA-G-TATT---
gi|15142 : TCGATGGCTTAGCGCAAGACT-----G-------GACC-AAGTCACTTTTT---AA---AA-ATTGTTCAGG-AAAAGCAAAGAA-C-TG---ATTATATTC----TGTTAT--ATTTG-GATAggctcaaaa
gi|15143 : GCTTGGTGCAAAACT-----AT--T-GTAATT-AGGT----TTTT---GC---AA-ATTGTTCAGG-AA---GAAAA-------------------------------CTTTA-GAAAGT---TTT-GCTT-ATATGTTTCA--CAATTC-----AAATGGA-AAATGAATTACTTACAATATTAACAAGTGTT------------TTT-GTACAACTTGATTTATTTGTAAA
gi|15144 : ---TTTCGCTA-----TTTACACTACATTC-----AAATGAA-AACTGCATTACTTACATTATTAACAAGTGTTATCAATTAAAGCTTTAGTATTACTTGAATTATTTGTAAA
Alignments
lowQualScore : 1111 111111111 11111 111111
lowQualScore : 3 66666 22 1 1111 7777 444444444 5 2 1 2 99999 1 1 9999999999 33 77 99 1 000000 66 9999 4 1 0 0 0
lowQualScore : . ..... .. . .... .... ......... . . . . ..... . . .......... .. .. .. . ...... .. .... . . . . .
lowQualScore : 4 77777 44 7 1111 4444 555555555 5 1 8 2 11111 6 0 9999999999 22 55 55 0 666666 11 4444 4 3 9 4 8
consensus : TATCGAGGGCTCGGCGCAAAACT-----AT--T-GTAACT--ACGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-GATATTTTTTGCTAATAT-----TTTTCA--AA----ATTCAAATGAA-AACTGCATTACTTACAATATTAACAAGTGTTATCAATTAAAGCTTTAGTATAACTTGATTTATTTGTAAA
Reference ( family-748 ) : TATCGAGGGCTCGGCGCAAAACT-----AT--T-GTAACT--ACGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-GATATTTTTTGCTAATAT-----TTTTCA--AA----ATTCAAATGAA-AACTGCATTACTTACAATATTAACAAGTGTTATCAATTAAAGCTTTAGTATAACTTGATTTATTTGTAAA
gi|15121 : TATCGAAGGCTTGGTGCAAAACT-----AT--T-GTAACT--AGGT----TTTT---GC---AA-ATTGTTCAGG-AGGAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-AATATTTT-TGCTAATAT-----TTTTCA--AA----ATTCAAATGAA-AACTGCATATCTTGCAGTATTAACAAGTGTTATCAATTAAAGCTTTAATATAACTTGATTTATTTGTAAA
gi|15122 : TACCGAGGGCTCAGCGCAAAACT-----AT--T-GTAACT--CTGT----TTTT---
gi|15123 : TATCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACT--AGGT----TGTT---GC---AA-ATTGTTCAGG-AGGAGGAAAAAA-C-TGTTTTTTATTTTA----G----T--CTTTA-TATATTTT-TGCTAATAG-----TTTTCA--AA----ATTCAAATGAA-AACTGCATTACTTACAATATTAACAAGTGTTATTAATTAAAGCTTTAATATAACTTGATTTATTTGTAAA
gi|15124 : TGTCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACT--AAGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-GATATTTTTTGCAAATAG-----TTTTCA--AA----ATTCAAATGAA-AACTGCATTACTTACATTATTAACAAGTGTTATCAATTAAATCTTTAGTATTACTTGATTTATTTGTAAA
gi|15125 : TATCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACT--AGGT----TTTT---GC---AA-ATTGTTCAGG-AGGATGAAAAAA-A-TTTTTTTTATTTTC----T----T--TTCAA-GATATTTT-TGCTAATAT-----TTTTCA--AA----ATTTAAATGGA-AACTGCATTTCTTACAATATTAACAAGGGTTATTAATTGAAGTTTTTATACAACTTGATTTATTTGTAAA
gi|15126 : TATCGAGGGCTTGGCGCATAACT-----AT--T-GTAACT--AGGT----TTTT---GC---AA-ATTGTTCATG-AGGAG-AAAAAA-C-TGTTTT-------C----T----T--CTTAA-GATATATTT-ACTTTT-T-----TTTTCA--AA----ATTCAAATGAA-AACTGCAATACTTACAATATTAACAAGTGTTATAAATTAAAGCTTTAATATAACAAGATTAATTTGTAAA
gi|15127 : TGTCGAGGGCCGAGGGCAAAACT-----AT--T-GTAACT--ACAT----TTT-----C---AACATTTTTCAGG-AGAAGGAAAAAA-C----CTTTAATTT------T----T--TTTTA--ATAT
gi|15128 : TGTCGAGGGCTTGGTGCGAAATG-----GT--T-GTAACT--CAGT----ATTC---CT---AA-ATTGTTCAGG-AAAGACAAAAAA-CTTGTTTaggctcaattaaaacagtctcttcatctacttgtgctaaattttaaaataaataataaacacatt
gi|15129 : TATCGAGGGCTCGGCGCAAGACT-----AT--T-CTAACTG-ACAT----TTCA---G----AA-ATTTTACAGG-AGGTGGAAAAAA-C-ATTTTTTTAGTTTCAATAT----TGGCTTTATAATATTGTCTTTTCATATACACATCTTAA--AACACCATATAAATAAACAAAGACATCAGT----ATGTCATCAAATGTAATTAATT
gi|15130 : TATCGAGTGCTTGGTGCGAAACG-----GT--T-GTAACTCAATAT----TCCT--------AA-ATTGTTCAGG-AAAGACAAAAAA-C---TTCTTCA---------T----T--CTTT----TATTTTTTGTTCATAT-----TTttgatttta
gi|15131 : TATCGATGGCTTGGTGCAAGACTGGACCAT--TAGTCACT----------TTTT---GA---GA-ATTGTTCAGG-AGAAGCAAAAAA-------TTTAATTTAC----A----T--TTTTA-attgtcttaagactattattttcaa
gi|15132 : TATCGATGGCTTGACGCAAGACTGG---ACCAT-GTAACT----------TTTT---GA---AA-ATTGTCAAGG-AGAAG--CAAAA-C-CG-----GATTATT----T----T--CTTTA--ATATTT
gi|15133 : TATCGATGACTTGGCGCAAGACT-----G-------GACC--AAGTCACTTTTT---GA---AA-ATTGTTCAGG-AGAAGCAATAA
gi|15134 : TATCGAGGGCCGAGCGCAAAATT-----A--------------CAT----TTT-----C---AACATTTTTCAGA-AGAAGGAAAAAA-C---CTTTTAATTTTT----T----T--
gi|15135 : ATCGAGGGCTCAGCGCAACACT-----AT--T-GTAACT--CCGT----TTTTTTCAA---AA-ATCGTT
gi|15136 : ATCGAGGGCTCAACACAAAACT-----GT--C-GTTACT--CCAT----TTTT---CA---AA-ATTGTTCAAGCAGAAGGAAAAAA-C-T-TAATTTA-TTTG----T----T--TTTTA-TATAT
gi|15137 : ATCGAGGGCTCAGCGCAACACT-----AT--T-GTAACT--CCGT----TTTT---TCCAAAA-ATCGTT
gi|15138 : TCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACT--AGGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATATTC----G----T--CTTTA-GATA-TTTTTGCAAAAAG-----TTTTCA--AA----ATTCAAATGAA-AACTGCATTACTTACATTATTAACAAGTGTTATCAATTAAAGTTTTAGTATTACTTGATTTATTTGTAAA
gi|15139 : TCGAGGGCTCAGCGCAACACT-----AT--T-GTAACT--CCGT----TTTT---TCCAAAA-ATCGTT
gi|15140 : TCGAGGGCCGAGCGCAAAACT-----TT--T-CTAACT--ACAT----TTT-----C---AACATTTTTCAGG-AGAAGGAAAAAA-C----CTTTTATTTTT----T----T--
gi|15141 : TCGAGGGCCGAGCGCAAAACT-----AT--T-CTAACT--ACAT----T------------------TTCAGG-AGAAGGAAAAAACC-TG---TTCATTTT-----T----T--TTTTA-G-TATT
gi|15142 : TCGATGGCTTAGCGCAAGACT-----G-------GACC--AAGTCACTTTTT---AA---AA-ATTGTTCAGG-AAAAGCAAAGAA-C-TG---ATTATATTC----TGTTAT--ATTTG-GATAggctcaaaa
gi|15143 : GCTTGGTGCAAAACT-----AT--T-GTAATT--AGGT----TTTT---GC---AA-ATTGTTCAGG-AA---GAAAA-------------------------------CTTTA-GAAAGTTTT-GCTTATAT-----GTTTCA--CA----ATTCAAATGGA-AAATGAATTACTTACAATATTAACAAGTGTT------------TTT-GTACAACTTGATTTATTTGTAAA
gi|15144 : TTTCGCTA---------TTTACACTAC----ATTCAAATGAA-AACTGCATTACTTACATTATTAACAAGTGTTATCAATTAAAGCTTTAGTATTACTTGAATTATTTGTAAA
Alignments
lowQualScore : 1111 111111111 11111 111111
lowQualScore : 3 66666 22 1 1111 7777 444444444 5 2 1 2 99999 1 1 9999999999 33 77 99 1 000000 66 9999 4 1 0 0 0
lowQualScore : . ..... .. . .... .... ......... . . . . ..... . . .......... .. .. .. . ...... .. .... . . . . .
lowQualScore : 4 77777 44 7 1111 4444 555555555 5 1 8 2 11111 6 0 9999999999 22 55 55 0 666666 11 4444 4 3 9 4 8
consensus : TATCGAGGGCTCGGCGCAAAACT-----AT--T-GTAACT--ACGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-GATATTTTTTGCTAATAT-----TTTTCA--AA----ATTCAAATGAA-AACTGCATTACTTACAATATTAACAAGTGTTATCAATTAAAGCTTTAGTATAACTTGATTTATTTGTAAA
Reference ( family-748 ) : TATCGAGGGCTCGGCGCAAAACT-----AT--T-GTAACT--ACGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-GATATTTTTTGCTAATAT-----TTTTCA--AA----ATTCAAATGAA-AACTGCATTACTTACAATATTAACAAGTGTTATCAATTAAAGCTTTAGTATAACTTGATTTATTTGTAAA
gi|15121 : TATCGAAGGCTTGGTGCAAAACT-----AT--T-GTAACT--AGGT----TTTT---GC---AA-ATTGTTCAGG-AGGAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-AATATTTT-TGCTAATAT-----TTTTCA--AA----ATTCAAATGAA-AACTGCATATCTTGCAGTATTAACAAGTGTTATCAATTAAAGCTTTAATATAACTTGATTTATTTGTAAA
gi|15122 : TACCGAGGGCTCAGCGCAAAACT-----AT--T-GTAACT--CTGT----TTTT---
gi|15123 : TATCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACT--AGGT----TGTT---GC---AA-ATTGTTCAGG-AGGAGGAAAAAA-C-TGTTTTTTATTTTA----G----T--CTTTA-TATATTTT-TGCTAATAG-----TTTTCA--AA----ATTCAAATGAA-AACTGCATTACTTACAATATTAACAAGTGTTATTAATTAAAGCTTTAATATAACTTGATTTATTTGTAAA
gi|15124 : TGTCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACT--AAGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-GATATTTTTTGCAAATAG-----TTTTCA--AA----ATTCAAATGAA-AACTGCATTACTTACATTATTAACAAGTGTTATCAATTAAATCTTTAGTATTACTTGATTTATTTGTAAA
gi|15125 : TATCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACT--AGGT----TTTT---GC---AA-ATTGTTCAGG-AGGATGAAAAAA-A-TTTTTTTTATTTTC----T----T--TTCAA-GATATTTT-TGCTAATAT-----TTTTCA--AA----ATTTAAATGGA-AACTGCATTTCTTACAATATTAACAAGGGTTATTAATTGAAGTTTTTATACAACTTGATTTATTTGTAAA
gi|15126 : TATCGAGGGCTTGGCGCATAACT-----AT--T-GTAACT--AGGT----TTTT---GC---AA-ATTGTTCATG-AGGAG-AAAAAA-C-TGTTTT-------C----T----T--CTTAA-GATATATTT-ACTTTT-T-----TTTTCA--AA----ATTCAAATGAA-AACTGCAATACTTACAATATTAACAAGTGTTATAAATTAAAGCTTTAATATAACAAGATTAATTTGTAAA
gi|15127 : TGTCGAGGGCCGAGGGCAAAACT-----AT--T-GTAACT--ACAT----TTT-----C---AACATTTTTCAGG-AGAAGGAAAAAA-C----CTTTAATTT------T----T--TTTTA--ATAT
gi|15128 : TGTCGAGGGCTTGGTGCGAAATG-----GT--T-GTAACT--CAGT----ATTC---CT---AA-ATTGTTCAGG-AAAGACAAAAAA-CTTGTTTaggctcaattaaaacagtctcttcatctacttgtgctaaattttaaaataaataataaacacatt
gi|15129 : TATCGAGGGCTCGGCGCAAGACT-----AT--T-CTAACTG-ACAT----TTCA---G----AA-ATTTTACAGG-AGGTGGAAAAAA-C-ATTTTTTTAGTTTCAATAT----TGGCTTTATAATATTGTCTTTTCATATACACATCTTAA--AACACCATATAAATAAACAAAGACATCAGT----ATGTCATCAAATGTAATTAATT
gi|15130 : TATCGAGTGCTTGGTGCGAAACG-----GT--T-GTAACTCAATAT----TCCT--------AA-ATTGTTCAGG-AAAGACAAAAAA-C---TTCTTCA---------T----T--CTTT----TATTTTTTGTTCATAT-----TTttgatttta
gi|15131 : TATCGATGGCTTGGTGCAAGACTGGACCAT--TAGTCACT----------TTTT---GA---GA-ATTGTTCAGG-AGAAGCAAAAAA-------TTTAATTTAC----A----T--TTTTA-attgtcttaagactattattttcaa
gi|15132 : TATCGATGGCTTGACGCAAGACTGG---ACCAT-GTAACT----------TTTT---GA---AA-ATTGTCAAGG-AGAAG--CAAAA-C-CG-----GATTATT----T----T--CTTTA--ATATTT
gi|15133 : TATCGATGACTTGGCGCAAGACT-----G-------GACC--AAGTCACTTTTT---GA---AA-ATTGTTCAGG-AGAAGCAATAA
gi|15134 : TATCGAGGGCCGAGCGCAAAATT-----A--------------CAT----TTT-----C---AACATTTTTCAGA-AGAAGGAAAAAA-C---CTTTTAATTTTT----T----T--
gi|15135 : ATCGAGGGCTCAGCGCAACACT-----AT--T-GTAACT--CCGT----TTTTTTCAA---AA-ATCGTT
gi|15136 : ATCGAGGGCTCAACACAAAACT-----GT--C-GTTACT--CCAT----TTTT---CA---AA-ATTGTTCAAGCAGAAGGAAAAAA-C-T-TAATTTA-TTTG----T----T--TTTTA-TATAT
gi|15137 : ATCGAGGGCTCAGCGCAACACT-----AT--T-GTAACT--CCGT----TTTT---TCCAAAA-ATCGTT
gi|15138 : TCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACT--AGGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATATTC----G----T--CTTTA-GATA-TTTTTGCAAAAAG-----TTTTCA--AA----ATTCAAATGAA-AACTGCATTACTTACATTATTAACAAGTGTTATCAATTAAAGTTTTAGTATTACTTGATTTATTTGTAAA
gi|15139 : TCGAGGGCTCAGCGCAACACT-----AT--T-GTAACT--CCGT----TTTT---TCCAAAA-ATCGTT
gi|15140 : TCGAGGGCCGAGCGCAAAACT-----TT--T-CTAACT--ACAT----TTT-----C---AACATTTTTCAGG-AGAAGGAAAAAA-C----CTTTTATTTTT----T----T--
gi|15141 : TCGAGGGCCGAGCGCAAAACT-----AT--T-CTAACT--ACAT----T------------------TTCAGG-AGAAGGAAAAAACC-TG---TTCATTTT-----T----T--TTTTA-G-TATT
gi|15142 : TCGATGGCTTAGCGCAAGACT-----G-------GACC--AAGTCACTTTTT---AA---AA-ATTGTTCAGG-AAAAGCAAAGAA-C-TG---ATTATATTC----TGTTAT--ATTTG-GATAggctcaaaa
gi|15143 : GCTTGGTGCAAAACT-----AT--T-GTAATT--AGGT----TTTT---GC---AA-ATTGTTCAGG-AA---GAAAA-------------------------------CTTTA-GAAAGTTTT-GCTTATAT-----GTTTCA--CA----ATTCAAATGGA-AAATGAATTACTTACAATATTAACAAGTGTT------------TTT-GTACAACTTGATTTATTTGTAAA
gi|15144 : TTTCGCTA---------TTTACACTAC----ATTCAAATGAA-AACTGCATTACTTACATTATTAACAAGTGTTATCAATTAAAGCTTTAGTATTACTTGAATTATTTGTAAA
blockSeqs : C GGACC CA A CAAT CACT TTTCAA C C G C TTGTT T T CAATAT GG TA TT A TACACA CT CACC C A
blockSeqs : T GG . . GAC CACT TTCCAA C . G . TGTT T T CTGTTA . T CT A G . . . T
blockSeqs : T . . . CT . TTCCAA C . G . TGTT T T AG . G TT A G . . . A
blockSeqs : T . . . AG . TGC . . G . TTTT A T CT . G TT T T . . . A
blockSeqs : T . . . AA . TGC . . C . TGTT T G CT . G TC C T . . . A
blockSeqs : G . . . AG . TGC . . G . ATTT C T CT . T T C T . . . T
blockSeqs : T . . . AG . TGC . . C . TGTT A T CA . G T A G . . . A
blockSeqs : C . . . AC . CCT . . C . TTA G T TT . G T T T . . . T
blockSeqs : T . . . CA . TGA . . C . TT A T TT . G T A .
blockSeqs : T . . . AA . TGA . . G . CG T T GT . G
blockSeqs : T . . . CC . TGA . . G . CT T T CG . .
blockSeqs : T . . . CC . TCA . . G . TG T T TT . .
blockSeqs : G . . . CC . TGC . . G . TG C . T . .
blockSeqs : C . . . AG . TAA . . G . C T . T .
blockSeqs : C . . . CC . TGC . . C . C . . T .
blockSeqs : C . . . AC . AG . . G . . . . . .
blockSeqs : T . . . AC . C . . . . .
blockSeqs : C . . . AA . T . . .
blockSeqs : G . . . AG . C .
blockSeqs : G . . . C . C .
blockSeqs : T . . . . . . .
blockSeqs : T . . . . .
blockSeqCons : TT
originalCons : TATCGAGGGCTCGGCGCAAAACT-----AT--T-GTAACT--ACGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-GATATTTTTTGCTAATAT-----TTTTCA--AA----ATTCAAATGAA-AACTGCATTACTTACAATATTAACAAGTGTTATCAATTAAAGCTTTAGTATAACTTGATTTATTTGTAAA
finalCons : TATCGAGGGCTCGGCGCAAAACT-----AT--T-GTAACT--ACGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-GATATTTTTTGCTAATAT-----TTTTCA--AA----ATTCAAATGAA-AACTGCATTACTTACAATATTAACAAGTGTTATCAATTAAAGCTTTAGTATAACTTGATTTATTTGTAAA
Alignments
lowQualScore : 1111 111111111 11111 111111
lowQualScore : 3 66666 22 1 1111 7777 444444444 5 2 1 2 99999 1 1 9999999999 33 77 99 1 000000 66 9999 4 1 0 0 0
lowQualScore : . ..... .. . .... .... ......... . . . . ..... . . .......... .. .. .. . ...... .. .... . . . . .
lowQualScore : 4 77777 44 7 1111 4444 555555555 5 1 8 2 11111 6 0 9999999999 22 55 55 0 666666 11 4444 4 3 9 4 8
consensus : TATCGAGGGCTCGGCGCAAAACT-----AT--T-GTAACT--ACGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-GATATTTTTTGCTAATAT-----TTTTCA--AA----ATTCAAATGAA-AACTGCATTACTTACAATATTAACAAGTGTTATCAATTAAAGCTTTAGTATAACTTGATTTATTTGTAAA
Reference ( family-748 ) : TATCGAGGGCTCGGCGCAAAACT-----AT--T-GTAACT--ACGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-GATATTTTTTGCTAATAT-----TTTTCA--AA----ATTCAAATGAA-AACTGCATTACTTACAATATTAACAAGTGTTATCAATTAAAGCTTTAGTATAACTTGATTTATTTGTAAA
gi|15121 : TATCGAAGGCTTGGTGCAAAACT-----AT--T-GTAACT--AGGT----TTTT---GC---AA-ATTGTTCAGG-AGGAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-AATATTTT-TGCTAATAT-----TTTTCA--AA----ATTCAAATGAA-AACTGCATATCTTGCAGTATTAACAAGTGTTATCAATTAAAGCTTTAATATAACTTGATTTATTTGTAAA
gi|15122 : TACCGAGGGCTCAGCGCAAAACT-----AT--T-GTAACT--CTGT----TTTT---
gi|15123 : TATCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACT--AGGT----TGTT---GC---AA-ATTGTTCAGG-AGGAGGAAAAAA-C-TGTTTTTTATTTTA----G----T--CTTTA-TATATTTT-TGCTAATAG-----TTTTCA--AA----ATTCAAATGAA-AACTGCATTACTTACAATATTAACAAGTGTTATTAATTAAAGCTTTAATATAACTTGATTTATTTGTAAA
gi|15124 : TGTCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACT--AAGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATTTTC----T----T--CTTTA-GATATTTTTTGCAAATAG-----TTTTCA--AA----ATTCAAATGAA-AACTGCATTACTTACATTATTAACAAGTGTTATCAATTAAATCTTTAGTATTACTTGATTTATTTGTAAA
gi|15125 : TATCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACT--AGGT----TTTT---GC---AA-ATTGTTCAGG-AGGATGAAAAAA-A-TTTTTTTTATTTTC----T----T--TTCAA-GATATTTT-TGCTAATAT-----TTTTCA--AA----ATTTAAATGGA-AACTGCATTTCTTACAATATTAACAAGGGTTATTAATTGAAGTTTTTATACAACTTGATTTATTTGTAAA
gi|15126 : TATCGAGGGCTTGGCGCATAACT-----AT--T-GTAACT--AGGT----TTTT---GC---AA-ATTGTTCATG-AGGAG-AAAAAA-C-TGTTTT-------C----T----T--CTTAA-GATATATTT-ACTTTT-T-----TTTTCA--AA----ATTCAAATGAA-AACTGCAATACTTACAATATTAACAAGTGTTATAAATTAAAGCTTTAATATAACAAGATTAATTTGTAAA
gi|15127 : TGTCGAGGGCCGAGGGCAAAACT-----AT--T-GTAACT--ACAT----TTT-----C---AACATTTTTCAGG-AGAAGGAAAAAA-C----CTTTAATTT------T----T--TTTTA--ATAT
gi|15128 : TGTCGAGGGCTTGGTGCGAAATG-----GT--T-GTAACT--CAGT----ATTC---CT---AA-ATTGTTCAGG-AAAGACAAAAAA-CTTGTTTaggctcaattaaaacagtctcttcatctacttgtgctaaattttaaaataaataataaacacatt
gi|15129 : TATCGAGGGCTCGGCGCAAGACT-----AT--T-CTAACTG-ACAT----TTCA---G----AA-ATTTTACAGG-AGGTGGAAAAAA-C-ATTTTTTTAGTTTCAATAT----TGGCTTTATAATATTGTCTTTTCATATACACATCTTAA--AACACCATATAAATAAACAAAGACATCAGT----ATGTCATCAAATGTAATTAATT
gi|15130 : TATCGAGTGCTTGGTGCGAAACG-----GT--T-GTAACTCAATAT----TCCT--------AA-ATTGTTCAGG-AAAGACAAAAAA-C---TTCTTCA---------T----T--CTTT----TATTTTTTGTTCATAT-----TTttgatttta
gi|15131 : TATCGATGGCTTGGTGCAAGACTGGACCAT--TAGTCACT----------TTTT---GA---GA-ATTGTTCAGG-AGAAGCAAAAAA-------TTTAATTTAC----A----T--TTTTA-attgtcttaagactattattttcaa
gi|15132 : TATCGATGGCTTGACGCAAGACTGG---ACCAT-GTAACT----------TTTT---GA---AA-ATTGTCAAGG-AGAAG--CAAAA-C-CG-----GATTATT----T----T--CTTTA--ATATTT
gi|15133 : TATCGATGACTTGGCGCAAGACT-----G-------GACC--AAGTCACTTTTT---GA---AA-ATTGTTCAGG-AGAAGCAATAA
gi|15134 : TATCGAGGGCCGAGCGCAAAATT-----A--------------CAT----TTT-----C---AACATTTTTCAGA-AGAAGGAAAAAA-C---CTTTTAATTTTT----T----T--
gi|15135 : ATCGAGGGCTCAGCGCAACACT-----AT--T-GTAACT--CCGT----TTTTTTCAA---AA-ATCGTT
gi|15136 : ATCGAGGGCTCAACACAAAACT-----GT--C-GTTACT--CCAT----TTTT---CA---AA-ATTGTTCAAGCAGAAGGAAAAAA-C-T-TAATTTA-TTTG----T----T--TTTTA-TATAT
gi|15137 : ATCGAGGGCTCAGCGCAACACT-----AT--T-GTAACT--CCGT----TTTT---TCCAAAA-ATCGTT
gi|15138 : TCGAGGGCTTGGCGCAAAACT-----AT--T-GTAACT--AGGT----TTTT---GC---AA-ATTGTTCAGG-AGAAGGAAAAAA-C-TGTTTTTTATATTC----G----T--CTTTA-GATA-TTTTTGCAAAAAG-----TTTTCA--AA----ATTCAAATGAA-AACTGCATTACTTACATTATTAACAAGTGTTATCAATTAAAGTTTTAGTATTACTTGATTTATTTGTAAA
gi|15139 : TCGAGGGCTCAGCGCAACACT-----AT--T-GTAACT--CCGT----TTTT---TCCAAAA-ATCGTT
gi|15140 : TCGAGGGCCGAGCGCAAAACT-----TT--T-CTAACT--ACAT----TTT-----C---AACATTTTTCAGG-AGAAGGAAAAAA-C----CTTTTATTTTT----T----T--
gi|15141 : TCGAGGGCCGAGCGCAAAACT-----AT--T-CTAACT--ACAT----T------------------TTCAGG-AGAAGGAAAAAACC-TG---TTCATTTT-----T----T--TTTTA-G-TATT
gi|15142 : TCGATGGCTTAGCGCAAGACT-----G-------GACC--AAGTCACTTTTT---AA---AA-ATTGTTCAGG-AAAAGCAAAGAA-C-TG---ATTATATTC----TGTTAT--ATTTG-GATAggctcaaaa
gi|15143 : GCTTGGTGCAAAACT-----AT--T-GTAATT--AGGT----TTTT---GC---AA-ATTGTTCAGG-AA---GAAAA-------------------------------CTTTA-GAAAGTTTT-GCTTATAT-----GTTTCA--CA----ATTCAAATGGA-AAATGAATTACTTACAATATTAACAAGTGTT------------TTT-GTACAACTTGATTTATTTGTAAA
gi|15144 : TTTCGCTA---------TTTACACTAC----ATTCAAATGAA-AACTGCATTACTTACATTATTAACAAGTGTTATCAATTAAAGCTTTAGTATTACTTGAATTATTTGTAAA