lowQualScore : 1
lowQualScore : 2 7 6 4 5 5 3 1 1 22 1 1 5 9 33
lowQualScore : . . . . . . . . . .. . . . . ..
lowQualScore : 7 0 0 4 0 4 1 7 7 44 7 7 9 0 22
consensus : ACGTGCAAAATAAGCATTTCGTGCCAAACAGATGCGCACGAGTA-ATTG-TAT--AG-AATTTCG-CAATCGGGCTATGTAAAATCA--ATACA
Reference ( gi|120017 ) : ACATACGAAATAGGCATTTCGGGCCAAACGGATGCGCACAAGTA-ATTG-TAT--AG-AATTTCG-CAATCAGCCTATGTAAAATCA--ATACA
gi|120019 : ACGTGCAAAATCAGCATTTCGTGCCAAATAGATGCGCACGAGGA-ATTG-TAT--AG-AATTTTG-TAATCTGCTTATGTAAAATCA--ATACA
gi|120020 : ACGTGCAAAATCAGCATTTCGTGCCAAATAGATGTGCACGAGGA-ATTG-TAT--AG-AATTTTG-TAATCTGCTTATGTAAAATCA--ATACA
gi|120018 : ACATGCAAAATATGCATTTTGTGCCAAACAGATGCGGACAGGTA-ATTG-TAT--AG-AATTTGG-CAGTCGGGCTTTGTAACATCA--ATACAt
gi|120022 : ACATGTAAAATAAACATTTCATGCCAAACAGATGTGCACGAGTA-ATTG-TAT--AG-AATTTCA-CAACCAGGCTTTTTAAAATTA--ATACt
gi|120024 : ACGTGTAAAAAAAGCATTTCGTGCCAAACAGATGCGCACGAGTA-ATTG-TAT--AA-AATGTCT-TAATAGGCATATGTAAAATTA--ATACgt
gi|120026 : ACGTGCAAAATAAGCATTTCGTGCCAAACCGATGCGCACGAGTG-ATTG-TAT--AG-ATTATCG-CAACCAG-----GTAGAATCA--ATATA
gi|120023 : ACGTCCAAAATAAATAGTTCGTGCCAAACAGATGCGCACGAGTA-ATTG-CAT--AT-AATTTCG-AAATCTGGCTAAGTAAAACCA--ATACAt
gi|120025 : ACGTGCAAATTAAGCATTAAGTGCCAAACCGATGCGCACGAGTA-ATTG-TAT--AG-ATTTTCG-CAATCGGGGTATGTAATTTGA--ATACA
gi|120030 : ACGTGCAAAATAAGTATTCCGTGTCAAACAGACGCGCACGAGTA-ATTT-TAT--TG-AATTTCGCCAAT
gi|120033 : CAAAATAAGCATTTTGTGCCAAACAGATACTCAAAAGAA-ATTG-TAT--AG-AATTTTG-CAATCGGGCTATGTAAAATAA--ATACA
gi|120021 : catgtcAAATAAGCATTTTGTGCCAAGCAGATGAGCATGAGTA-ACTG-TAT--AG-AGTTTTG-CAATCAGCCTATGTAAAATCA--ATACAt
gi|120035 : acatgtAAATAAGCATTTCATGCCAAACAGATGCACACAAGTA-ATTG-TAT--AG-AATTTCC-CAATAGGGCTATGTAAAAACA--ATGCAt
gi|120036 : tgaaAAATAAGCATATTGTGCCAAACAGATGCACACAAGTT-ACTG-TAT--AGTGATTTCG-CAATTGGGTCATGTAAAACCA--ATACA
gi|120028 : tgtaAAATAG----TTCGTGCTTAACGTATGCGCACGAGTT-ATTA-TAC--AG-AATTTCG-CAATCGGCCTATGTAAAATCt
gi|120027 : acgtgcaaattAAATAG----TTCGTGCTTAACGTATGCGCACGAGTT-ATTA-TAC--AG-AATTTCG-CAATCGGCCTATGTAAAATC
gi|120029 : acgtgcaaattAAACATGTTTTTCTTGCCAAACAGATGCACACGAGTA-ATTG-TAT--AG-AAATTAT-CAATCGGGCTACATA
gi|120038 : acgtgcaaAAA-AGGCATTTCGTGCCAAACAGATGAACACGAG----TTGCCAT--AG-GATTATG-CAA
gi|120034 : AAATAAGCATTTCCTGCTAAACAAA-------------------AT--AA-AAGTTCG-CAATCGAGCTATGTAGAATGA--AT
gi|120031 : cgtgaaAATAAGCATCTCGTGTCAA-CAGGTGCGATCGATTA-ATTG-TATAAAA-AAAATCG-CAATCGGGCAATGT-AAATCA--CTACA
gi|120037 : acgtgtagCGTGCCAAACAGATGTGCATGAGTA-ATTG-TAT--AG-AATTTTA-CAGTCGGGATATGTAAAATCA--ATACA
gi|120032 : aaataacCCAAACAGAGGCACACGAGTATATGG-TAA--AG-ACTTTCG-CAAT--------GTAAAACCA--ATATAt
gi|120039 : acatgcaacacttgttAAACA-ATGCACACAAGTA-ATTG-TAT--AG-AATTTCC-TAGTAGGGCTATGTAAAAACAACATACAt
gi|120040 : CACGAGTA-ATTG-TAT--AG-AATATTA-CAGCCGGGCTATGTAAAAt
Alignments
lowQualScore : 1 1 1 22 1 1 1 33
lowQualScore : . . . .. . . . ..
lowQualScore : 8 7 7 33 7 7 4 11
consensus : ACGTGCAAAA-TAAGCATTTCGTGCCAAACAGATGCGCACGAGTA-ATTG-TAT--AG-AATTTCG-CAATCGGGCTATGTAAAATCA--ATACA
Reference ( family-744 ) : ACGTGCAAAA-TAAGCATTTCGTGCCAAACAGATGCGCACGAGTA-ATTG-TAT--AG-AATTTCG-CAATCGGGCTATGTAAAATCA--ATACA
gi|120017 : ACATACGAAA-TAGGCATTTCGGGCCAAACGGATGCGCACAAGTA-ATTG-TAT--AG-AATTTCG-CAATCAGCCTATGTAAAATCA--ATACA
gi|120018 : ACATGCAAAA-TATGCATTTTGTGCCAAACAGATGCGGACAGGTA-ATTG-TAT--AG-AATTTGG-CAGTCGGGCTTTGTAACATCA--ATACA
gi|120019 : ACGTGCAAAA-TCAGCATTTCGTGCCAAATAGATGCGCACGAGGA-ATTG-TAT--AG-AATTTTG-TAATCTGCTTATGTAAAATCA--ATACAt
gi|120020 : ACGTGCAAAA-TCAGCATTTCGTGCCAAATAGATGTGCACGAGGA-ATTG-TAT--AG-AATTTTG-TAATCTGCTTATGTAAAATCA--ATACA
gi|120021 : ACATGTAAA--TAAGCATTTTGTGCCAAGCAGATGAGCATGAGTA-ACTG-TAT--AG-AGTTTTG-CAATCAGCCTATGTAAAATCA--ATACAt
gi|120022 : ACATGTAAAA-TAAACATTTCATGCCAAACAGATGTGCACGAGTA-ATTG-TAT--AG-AATTTCA-CAACCAGGCTTTTTAAAATTA--ATACt
gi|120023 : ACGTCCAAAA-TAAATAGTTCGTGCCAAACAGATGCGCACGAGTA-ATTG-CAT--AT-AATTTCG-AAATCTGGCTAAGTAAAACCA--ATACAgt
gi|120024 : ACGTGTAAAA-AAAGCATTTCGTGCCAAACAGATGCGCACGAGTA-ATTG-TAT--AA-AATGTCT-TAATAGGCATATGTAAAATTA--ATAC
gi|120025 : ACGTGCAAAT-TAAGCATTAAGTGCCAAACCGATGCGCACGAGTA-ATTG-TAT--AG-ATTTTCG-CAATCGGGGTATGTAATTTGA--ATACA
gi|120026 : ACGTGCAAAA-TAAGCATTTCGTGCCAAACCGATGCGCACGAGTG-ATTG-TAT--AG-ATTATCG-CAACCAG-----GTAGAATCA--ATATA
gi|120027 : ACGTGCAAAT-TAAATAGTTCGTGCTTAACGTATGCGCACGAGTT-ATTA-TAC--AG-AATTTCG-CAATCGGCCTATGTAAAATCt
gi|120028 : ACGTGCAAAT-TAAATAGTTCGTGCTTAACGTATGCGCACGAGTT-ATTA-TAC--AG-AATTTCG-CAATCGGCCTATGTAAAATC
gi|120029 : ACGTGCAAAAACATGTTTTTCTTGCCAAACAGATGCACACGAGTA-ATTG-TAT--AG-AAATTAT-CAATCGGGCTACATA
gi|120030 : ACGTGCAAAA-TAAGTATTCCGTGTCAAACAGACGCGCACGAGTA-ATTT-TAT--TG-AATTTCGCCAAT
gi|120031 : ACGTGTAGAA-TAAGCATCTCGTGTC-AACAGGTGCGATCGATTA-ATTG-TATAAAA-AAAATCG-CAATCGGGCAATGT-AAATCA--CTACA
gi|120032 : ACATGCAA-------CACTT-GTTCCAAACAGAGGCACACGAGTATATGG-TAA--AG-ACTTTCG-CA--------ATGTAAAACCA--ATATA
gi|120033 : ATGTCCAAAA-TAAGCATTTTGTGCCAAACAGATACTCAAAAGAA-ATTG-TAT--AG-AATTTTG-CAATCGGGCTATGTAAAATAA--ATACAt
gi|120034 : cCGTGAAAAA-TAAGCATTTCCTGCTAAACAAA-------------------AT--AA-AAGTTCG-CAATCGAGCTATGTAGAATGA--ATt
gi|120035 : TGAAAAA-TAAGCATTTCATGCCAAACAGATGCACACAAGTA-ATTG-TAT--AG-AATTTCC-CAATAGGGCTATGTAAAAACA--ATGCA
gi|120036 : TGTAAAA-TAAGCATATTGTGCCAAACAGATGCACACAAGTT-ACTG-TAT--AGTGATTTCG-CAATTGGGTCATGTAAAACCA--ATACA
gi|120037 : AAA-TAA-----CCGTGCCAAACAGATGTGCATGAGTA-ATTG-TAT--AG-AATTTTA-CAGTCGGGATATGTAAAATCA--ATACAt
gi|120038 : AAA--AGGCATTTCGTGCCAAACAGATGAACACGAG----TTGCCAT--AG-GATTATG-CAAt
gi|120039 : AAACA-ATGCACACAAGTA-ATTG-TAT--AG-AATTTCC-TAGTAGGGCTATGTAAAAACAACATACA
gi|120040 : CACGAGTA-ATTG-TAT--AG-AATATTA-CAGCCGGGCTATGTAAAAt
Alignments
lowQualScore : 1 1 1 22 1 1 1 33
lowQualScore : . . . .. . . . ..
lowQualScore : 8 7 7 33 7 7 4 11
consensus : ACGTGCAAAA-TAAGCATTTCGTGCCAAACAGATGCGCACGAGTA-ATTG-TAT--AG-AATTTCG-CAATCGGGCTATGTAAAATCA--ATACA
Reference ( family-744 ) : ACGTGCAAAA-TAAGCATTTCGTGCCAAACAGATGCGCACGAGTA-ATTG-TAT--AG-AATTTCG-CAATCGGGCTATGTAAAATCA--ATACA
gi|120017 : ACATACGAAA-TAGGCATTTCGGGCCAAACGGATGCGCACAAGTA-ATTG-TAT--AG-AATTTCG-CAATCAGCCTATGTAAAATCA--ATACA
gi|120018 : ACATGCAAAA-TATGCATTTTGTGCCAAACAGATGCGGACAGGTA-ATTG-TAT--AG-AATTTGG-CAGTCGGGCTTTGTAACATCA--ATACA
gi|120019 : ACGTGCAAAA-TCAGCATTTCGTGCCAAATAGATGCGCACGAGGA-ATTG-TAT--AG-AATTTTG-TAATCTGCTTATGTAAAATCA--ATACAt
gi|120020 : ACGTGCAAAA-TCAGCATTTCGTGCCAAATAGATGTGCACGAGGA-ATTG-TAT--AG-AATTTTG-TAATCTGCTTATGTAAAATCA--ATACA
gi|120021 : ACATGTAAA--TAAGCATTTTGTGCCAAGCAGATGAGCATGAGTA-ACTG-TAT--AG-AGTTTTG-CAATCAGCCTATGTAAAATCA--ATACAt
gi|120022 : ACATGTAAAA-TAAACATTTCATGCCAAACAGATGTGCACGAGTA-ATTG-TAT--AG-AATTTCA-CAACCAGGCTTTTTAAAATTA--ATACt
gi|120023 : ACGTCCAAAA-TAAATAGTTCGTGCCAAACAGATGCGCACGAGTA-ATTG-CAT--AT-AATTTCG-AAATCTGGCTAAGTAAAACCA--ATACAgt
gi|120024 : ACGTGTAAAA-AAAGCATTTCGTGCCAAACAGATGCGCACGAGTA-ATTG-TAT--AA-AATGTCT-TAATAGGCATATGTAAAATTA--ATAC
gi|120025 : ACGTGCAAAT-TAAGCATTAAGTGCCAAACCGATGCGCACGAGTA-ATTG-TAT--AG-ATTTTCG-CAATCGGGGTATGTAATTTGA--ATACA
gi|120026 : ACGTGCAAAA-TAAGCATTTCGTGCCAAACCGATGCGCACGAGTG-ATTG-TAT--AG-ATTATCG-CAACCAG-----GTAGAATCA--ATATA
gi|120027 : ACGTGCAAAT-TAAATAGTTCGTGCTTAACGTATGCGCACGAGTT-ATTA-TAC--AG-AATTTCG-CAATCGGCCTATGTAAAATCt
gi|120028 : ACGTGCAAAT-TAAATAGTTCGTGCTTAACGTATGCGCACGAGTT-ATTA-TAC--AG-AATTTCG-CAATCGGCCTATGTAAAATC
gi|120029 : ACGTGCAAAAACATGTTTTTCTTGCCAAACAGATGCACACGAGTA-ATTG-TAT--AG-AAATTAT-CAATCGGGCTACATA
gi|120030 : ACGTGCAAAA-TAAGTATTCCGTGTCAAACAGACGCGCACGAGTA-ATTT-TAT--TG-AATTTCGCCAAT
gi|120031 : ACGTGTAGAA-TAAGCATCTCGTGTC-AACAGGTGCGATCGATTA-ATTG-TATAAAA-AAAATCG-CAATCGGGCAATGT-AAATCA--CTACA
gi|120032 : ACATGCAA-------CACTT-GTTCCAAACAGAGGCACACGAGTATATGG-TAA--AG-ACTTTCG-CA--------ATGTAAAACCA--ATATA
gi|120033 : ATGTCCAAAA-TAAGCATTTTGTGCCAAACAGATACTCAAAAGAA-ATTG-TAT--AG-AATTTTG-CAATCGGGCTATGTAAAATAA--ATACAt
gi|120034 : cCGTGAAAAA-TAAGCATTTCCTGCTAAACAAA-------------------AT--AA-AAGTTCG-CAATCGAGCTATGTAGAATGA--ATt
gi|120035 : TGAAAAA-TAAGCATTTCATGCCAAACAGATGCACACAAGTA-ATTG-TAT--AG-AATTTCC-CAATAGGGCTATGTAAAAACA--ATGCA
gi|120036 : TGTAAAA-TAAGCATATTGTGCCAAACAGATGCACACAAGTT-ACTG-TAT--AGTGATTTCG-CAATTGGGTCATGTAAAACCA--ATACA
gi|120037 : AAA-TAA-----CCGTGCCAAACAGATGTGCATGAGTA-ATTG-TAT--AG-AATTTTA-CAGTCGGGATATGTAAAATCA--ATACAt
gi|120038 : AAA--AGGCATTTCGTGCCAAACAGATGAACACGAG----TTGCCAT--AG-GATTATG-CAAt
gi|120039 : AAACA-ATGCACACAAGTA-ATTG-TAT--AG-AATTTCC-TAGTAGGGCTATGTAAAAACAACATACA
gi|120040 : CACGAGTA-ATTG-TAT--AG-AATATTA-CAGCCGGGCTATGTAAAAt
blockSeqs : A T C AA T C G AC
blockSeqs : . . . . . . C .
blockSeqs : . . . . . . C .
blockSeqs : . . . . . . C .
blockSeqs : . . . . . . G .
blockSeqs : . . . . . . G .
blockSeqs : . . . . . . C .
blockSeqs : . . . . . . G .
blockSeqs : . . . . . . C .
blockSeqs : . . . . . . C .
blockSeqs : . . . . . . G .
blockSeqs : . . . . . . G .
blockSeqs : . . . . . . G .
blockSeqs : . . . . . . G .
blockSeqs : . . . . . . G .
blockSeqs : . . . . . . G .
blockSeqs : . . . . . . G .
blockSeqs : . . . . . . G
blockSeqs : . . . . . . G
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : ACGTGCAAAA-TAAGCATTTCGTGCCAAACAGATGCGCACGAGTA-ATTG-TAT--AG-AATTTCG-CAATCGGGCTATGTAAAATCA--ATACA
finalCons : ACGTGCAAAA-TAAGCATTTCGTGCCAAACAGATGCGCACGAGTA-ATTG-TAT--AG-AATTTCG-CAATCGGGCTATGTAAAATCA--ATACA
Alignments
lowQualScore : 1 1 1 22 1 1 1 33
lowQualScore : . . . .. . . . ..
lowQualScore : 8 7 7 33 7 7 4 11
consensus : ACGTGCAAAA-TAAGCATTTCGTGCCAAACAGATGCGCACGAGTA-ATTG-TAT--AG-AATTTCG-CAATCGGGCTATGTAAAATCA--ATACA
Reference ( family-744 ) : ACGTGCAAAA-TAAGCATTTCGTGCCAAACAGATGCGCACGAGTA-ATTG-TAT--AG-AATTTCG-CAATCGGGCTATGTAAAATCA--ATACA
gi|120017 : ACATACGAAA-TAGGCATTTCGGGCCAAACGGATGCGCACAAGTA-ATTG-TAT--AG-AATTTCG-CAATCAGCCTATGTAAAATCA--ATACA
gi|120018 : ACATGCAAAA-TATGCATTTTGTGCCAAACAGATGCGGACAGGTA-ATTG-TAT--AG-AATTTGG-CAGTCGGGCTTTGTAACATCA--ATACA
gi|120019 : ACGTGCAAAA-TCAGCATTTCGTGCCAAATAGATGCGCACGAGGA-ATTG-TAT--AG-AATTTTG-TAATCTGCTTATGTAAAATCA--ATACAt
gi|120020 : ACGTGCAAAA-TCAGCATTTCGTGCCAAATAGATGTGCACGAGGA-ATTG-TAT--AG-AATTTTG-TAATCTGCTTATGTAAAATCA--ATACA
gi|120021 : ACATGTAAA--TAAGCATTTTGTGCCAAGCAGATGAGCATGAGTA-ACTG-TAT--AG-AGTTTTG-CAATCAGCCTATGTAAAATCA--ATACAt
gi|120022 : ACATGTAAAA-TAAACATTTCATGCCAAACAGATGTGCACGAGTA-ATTG-TAT--AG-AATTTCA-CAACCAGGCTTTTTAAAATTA--ATACt
gi|120023 : ACGTCCAAAA-TAAATAGTTCGTGCCAAACAGATGCGCACGAGTA-ATTG-CAT--AT-AATTTCG-AAATCTGGCTAAGTAAAACCA--ATACAgt
gi|120024 : ACGTGTAAAA-AAAGCATTTCGTGCCAAACAGATGCGCACGAGTA-ATTG-TAT--AA-AATGTCT-TAATAGGCATATGTAAAATTA--ATAC
gi|120025 : ACGTGCAAAT-TAAGCATTAAGTGCCAAACCGATGCGCACGAGTA-ATTG-TAT--AG-ATTTTCG-CAATCGGGGTATGTAATTTGA--ATACA
gi|120026 : ACGTGCAAAA-TAAGCATTTCGTGCCAAACCGATGCGCACGAGTG-ATTG-TAT--AG-ATTATCG-CAACCAG-----GTAGAATCA--ATATA
gi|120027 : ACGTGCAAAT-TAAATAGTTCGTGCTTAACGTATGCGCACGAGTT-ATTA-TAC--AG-AATTTCG-CAATCGGCCTATGTAAAATCt
gi|120028 : ACGTGCAAAT-TAAATAGTTCGTGCTTAACGTATGCGCACGAGTT-ATTA-TAC--AG-AATTTCG-CAATCGGCCTATGTAAAATC
gi|120029 : ACGTGCAAAAACATGTTTTTCTTGCCAAACAGATGCACACGAGTA-ATTG-TAT--AG-AAATTAT-CAATCGGGCTACATA
gi|120030 : ACGTGCAAAA-TAAGTATTCCGTGTCAAACAGACGCGCACGAGTA-ATTT-TAT--TG-AATTTCGCCAAT
gi|120031 : ACGTGTAGAA-TAAGCATCTCGTGTC-AACAGGTGCGATCGATTA-ATTG-TATAAAA-AAAATCG-CAATCGGGCAATGT-AAATCA--CTACA
gi|120032 : ACATGCAA-------CACTT-GTTCCAAACAGAGGCACACGAGTATATGG-TAA--AG-ACTTTCG-CA--------ATGTAAAACCA--ATATA
gi|120033 : ATGTCCAAAA-TAAGCATTTTGTGCCAAACAGATACTCAAAAGAA-ATTG-TAT--AG-AATTTTG-CAATCGGGCTATGTAAAATAA--ATACAt
gi|120034 : cCGTGAAAAA-TAAGCATTTCCTGCTAAACAAA-------------------AT--AA-AAGTTCG-CAATCGAGCTATGTAGAATGA--ATt
gi|120035 : TGAAAAA-TAAGCATTTCATGCCAAACAGATGCACACAAGTA-ATTG-TAT--AG-AATTTCC-CAATAGGGCTATGTAAAAACA--ATGCA
gi|120036 : TGTAAAA-TAAGCATATTGTGCCAAACAGATGCACACAAGTT-ACTG-TAT--AGTGATTTCG-CAATTGGGTCATGTAAAACCA--ATACA
gi|120037 : AAA-TAA-----CCGTGCCAAACAGATGTGCATGAGTA-ATTG-TAT--AG-AATTTTA-CAGTCGGGATATGTAAAATCA--ATACAt
gi|120038 : AAA--AGGCATTTCGTGCCAAACAGATGAACACGAG----TTGCCAT--AG-GATTATG-CAAt
gi|120039 : AAACA-ATGCACACAAGTA-ATTG-TAT--AG-AATTTCC-TAGTAGGGCTATGTAAAAACAACATACA
gi|120040 : CACGAGTA-ATTG-TAT--AG-AATATTA-CAGCCGGGCTATGTAAAAt