lowQualScore : 11 111111111111 1111 111 1 22222 1 1
lowQualScore : 5 00 77 333 88 000000000000 5 22 1 333 22 2222 3 2 000 777 3 1 3 5 1 66 44 777 66 22222 0 0 1 0
lowQualScore : . .. .. ... .. ............ . .. . ... .. .... . . ... ... . . . . . .. .. ... .. ..... . . . .
lowQualScore : 4 66 55 000 00 333333333333 7 66 9 333 66 2222 2 4 888 444 3 0 3 0 9 11 66 888 11 00000 1 1 9 8
consensus : CAGTGCTCCAGATAAGGCGC-GTATTT--GC--G--T---------ATNTAA-G--CATT-GA---AA--TTGNCGAANAAAGCATTGAAAATAATAAAT---GTGCGTACCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGCGTATCGTATTTCCAAAGAC--CGGGG-TTT---TCAC--AA-N---GGAAGTAGACACCGTGAAATAAACAAA
Reference ( gi|99826 ) : CAGTGCTCCAGATAAGGTGC-GTATTT--GC--G--T---------AAATAA-G--CATT-GA---AA--TTGACAAAAAAAGCATTGAAAATAATAAAT---GTGCGTACCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGGGTATCGTATTTCCAAAGAC--CGGGG-TTT---TCAC--AA-A---GGAAGTAGACACCGTCAAATAAACTAA
gi|99825 : CAGTGCTCCAGATAAGGTGC-GTATTT--GC--G--T---------AAATAA-G--CATT-GA---AA--TTGACAAAAAAAGCATTGAAAATAATAAAT---GTGCGTACCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGGGTATCGTATTTCCAAAGAC--CGGGG-TTT---TCAC--AA-A---GGAAGTAGACACCATGAAATAAACTAA
gi|99828 : CAGTGCTCCAGATAAGGTGC-GTATTT--GC--G--T---------AAATAA-G--CATT-GA---AA--TTGACAAAAAAAGCATTGAAAATAATAAAT---GTGCGTACTGG-TACGCAAA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGGGTATCGTATTTCCAAAGAC--CAGGG-TTT---TCAC--AA-A---GGAAGTAGACACCGTGAAATAAACCAA
gi|99827 : CAGTGCTCCAGATAAGGTGC-GTATTT--GC--A--T---------AAAAAA-G--CATT-GA---AA--TTGACAAAAAAAGCATTAAAAATAATAAAT---GTGTGTACCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGCATATCGTATTTCCAAAGAC--CGTGG-TTT---TCAC--AA-T---GGAAGTAGACACCGTGAAATGAACAAA
gi|99829 : CAGTGCTCCAGATAAGGTGC-GCATTT--GC--G--T---------AAATAA-G--CATT-GA---AA--ATGACAAAAAAAGCATTGAAAATAATAAAT---GTGCGTACCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCGTTGGCAATCTTGTGTGTATCGTATTTCCAAAGAC--TGGGG-TTT---TCAC--AA-C---GGAAGTAG--ACCGTGAAATAAACAAA
gi|99830 : CAGTGCTCCAGATAAGGTGC-ATATTT--GC--G--T---------AAATAA-G--CATT-GA---AA--TTGACAAAAAAAGCATTGAAAATAATAAAT---GTGTGTACCGG-TACACATA-AACAATTGAATTTAA-GCATTTCATTGGAGATCTTGTGCGTGTCGTATTTCCAAAGAC--CGGGG-TTT---TCAC--A
gi|99831 : CAGGGCTCCAGCTATGGTGC-GTATTT--GT--G--T---------AAATAA-G--AACT-GA---AA--TTG----------CATTGCAAATAA-AATT---GTGGGTACTGG-TACGCATATAAAAATCGGTCTTAA-GCATTTCACTGGTTATCTTTTGTGTATTGTATTTCCAAAGAC--TGGGT-TTTACATTAC--AA-------AAGTAGACATTGTGAAATAAACAAA
gi|99833 : CAGAGCTTCAGATAAGATGC-GTATTT--GC--G--T--------------------ATT-GACGCAA--TTAA-AAAAAAAGCAATTAAAATA--AACC---TTGCGTATC
gi|99834 : CAGTGCTCCAGATAAGCT-C--TATTTAGGG--G--T---------ATTTAA-G--CATT-GA---AA--TTTCTAAATAAAGCATTGAAA
gi|99832 : CAGTGCTCCAGATAAGCTGC-ATATTT--GC--G--TATTTCACTCAAATAA-ATTCATG-GA---AA-----ACACAAACAATTTTG---TTTTTAAGT---GCAC---CCGT-TACTCA-A-AATATTTGCCTTTAACACATAACATTGTTTATACAATG-----CGTATT--CAAACATTACTGTA-TTT---TCACTTAACA---GGAA------ACCGTCAGATAAAC
gi|99835 : CAGAGCTCCAGATAAGATGC-GTATCT--GC--G--T---------ATATGATG--CATT-AA---AAATTTG--TGGATACGCACCAGATTTGTTTTAT---GTGCGTATCAATTACGCATA-AGCAA-CGAGTTT
gi|99836 : CAGTGCTCCAGATAAGCTGC-GTATTT--GC--G--T---------A
gi|99837 : CAGAGCCCAAGATAAGATGC-GTATTT--GC--A--T---------ATATGATG--CATT-AA---AA--TTG
gi|99838 : CAGAGCCCCAGATAAGATGC-GTATCT--GC--A--T---------ATATGATG--CATTAAA---AA--TTGATGAA
gi|99839 : CAGTGCTCCAGATAA-GCAC--TATTTGGGG--G--T---------ATGTAA-G--TATT-GA---AA--TTTCTGAATAAAGCATTGAAATT--TAAAT---
gi|99841 : CAGTGCTCCAGATAA-GCAC--TATTT--GTGGG--T---------ATTTAA-G--CATT-GA---AA--CTTCTGAATAAAGCATTGAAATT--TAAAT---
gi|99840 : CAGTGCTCCAGATAA-GCAC--TATTTTGGA--G--T---------ATTTAA-G--CACT-GA---AA--TTACTGAATAAAGCATTGAAATT--TAAAT---
gi|99843 : CAGTGCTCCAGATAAG-CAC--CATTT--GG--GG-T---------ATTTAA-G--CATT-GA---AA--TCTCTGAATAAAGCATTG-AAATAA-AAATTTAGGGCGTA
gi|99842 : CAGTGCTCCAGATAAG-CAC--CATTT--GG--GG-T---------ATTTAA-G--CATT-GA---AA--TCTCTGAATAAAGCATTG-AAATAA-AAATTTAGGGCGTA
gi|99845 : CAGTGCTCCAGATAA-GCACTATATGG--GG--G--T---------ATTTAA-G--CATT-GA---AA--TTTCTGAATAAAGCATTGGAAAT--TAAAT---
gi|99844 : CAGTGTTCCAGATAAG-CAC-A-ATTT--GG--GGGT---------ATTTAA-G--CATT-GA---AA--TTTCTGAAAAAAGCATTGGAA
gi|99846 : AGTGCTCCAGATAAG-CAC--TATTT--GG--GG-T---------ATTTAA-G--CATT-GA---AA--TTTCTGAATAAAGCATTGAAA
gi|99847 : TGATCCAGATAAGGTGC-GTATTT--GC--G--T---------AAATAA-G--CATT-GA---AA--TTGACAAAAAAAGCATTGAAAATAATAAAT---GTGCGTACCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGCATATCGTATTTCCAAAGAC--CGGGGTTTT---TTAC--AA-C---GGAAGTAGACACCGTGAAATAAACAAA
gi|99825 : T---ATGCGTACCGG-TACGCACA-
gi|99847 : cagtgctccagataaggtgcgtatttgcgtaaataagcattgaaattgacaaaaaaagcattgaaaataataaaT---ATGCGTACCGG-TACGCACA-aacaattgaatttaagcatttcattggcgatcttgtgggtatcgtatttccaaagaccggggttttcacaaaggaagtagacaccatgaaataaactaa
gi|99829 : tgatccagataaggtgcgtatttgcgtaaataagcattgaaattgacaaaaaaagcattgaaaataataaaT---ATGCGTACCGG-TACGCACA-aacaattgaatttaagcatttcattggcgatcttgtgcatatcgtatttccaaagaccggggttttttacaacggaagtagacaccgtgaaataaacaaa
gi|99848 : cagtgctccagataaggtgcgcatttgcgtaaataagcattgaaaatgacaaaaaaagcattgaaaataataaaTCGTGTTTCCAAAGAC--CGTG---TT---TTAC--AG-GATTGAAAAT-GACACCACGAAATAAGCaacaattgaatttaagcatttcgttggcaatcttgtgtgtatcgtatttccaaagactggggttttcacaacggaagtagaccgtgaaataaacaaa
Alignments
lowQualScore : 44 99 77 222 77 11 5 1 22 999 1 999 666666 888 888888 3 4 4 4 0 4 55 4 55 8888 0
lowQualScore : .. .. .. ... .. .. . . .. ... . ... ...... ... ...... . . . . . . .. . .. .... .
lowQualScore : 55 77 22 555 66 55 5 8 55 999 7 333 888888 222 888888 1 0 0 4 7 0 55 0 55 8888 5
consensus : CAGTGCTCCAGATAAGGCGC-GTATTT--GC--G--TATNTAA-GCATT-GAAA--TTGCCGAANAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGCGTAT-CGTATTTCCAAAGAC--CGGGG-TTTTCAC--AA---CGGAAGTAGACACCGTGAAATAAACAAA
Reference ( family-739 ) : CAGTGCTCCAGATAAGGCGC-GTATTT--GC--G--TATNTAA-GCATT-GAAA--TTGNCGAANAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGCGTAT-CGTATTTCCAAAGAC--CGGGG-TTTTCAC--AA---NGGAAGTAGACACCGTGAAATAAACAAA
gi|99825 : CAGTGCTCCAGATAAGGTGC-GTATTT--GC--G--TAAATAA-GCATT-GAAA--TTGACAAAAAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGGGTAT-CGTATTTCCAAAGAC--CGGGG-TTTTCAC--AA---AGGAAGTAGACACCATGAAATAAACTAA
gi|99826 : CAGTGCTCCAGATAAGGTGC-GTATTT--GC--G--TAAATAA-GCATT-GAAA--TTGACAAAAAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGGGTAT-CGTATTTCCAAAGAC--CGGGG-TTTTCAC--AA---AGGAAGTAGACACCGTCAAATAAACTAA
gi|99827 : CAGTGCTCCAGATAAGGTGC-GTATTT--GC--A--TAAAAAA-GCATT-GAAA--TTGACAAAAAAAGCATTAAAAATAATAAA------T---GT------GTGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGCATAT-CGTATTTCCAAAGAC--CGTGG-TTTTCAC--AA---TGGAAGTAGACACCGTGAAATGAACAAA
gi|99828 : CAGTGCTCCAGATAAGGTGC-GTATTT--GC--G--TAAATAA-GCATT-GAAA--TTGACAAAAAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CTGG-TACGCAAA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGGGTAT-CGTATTTCCAAAGAC--CAGGG-TTTTCAC--AA---AGGAAGTAGACACCGTGAAATAAACCAA
gi|99829 : CAGTGCTCCAGATAAGGTGC-GCATTT--GC--G--TAAATAA-GCATT-GAAA--ATGACAAAAAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCGTTGGCAATCTTGTGTGTAT-CGTATTTCCAAAGAC--TGGGG-TTTTCAC--AA---CGGAAGTAG--ACCGTGAAATAAACAAA
gi|99830 : CAGTGCTCCAGATAAGGTGC-ATATTT--GC--G--TAAATAA-GCATT-GAAA--TTGACAAAAAAAGCATTGAAAATAATAAA------T---GT------GTGTA-CCGG-TACACATA-AACAATTGAATTTAA-GCATTTCATTGGAGATCTTGTGCGTGT-CGTATTTCCAAAGAC--CGGGG-TTTTCAC--A
gi|99831 : CAGGGCTCCAGCTATGGTGC-GTATTT--GT--G--TAAATAA-GAACT-GAAA--TTG----------CATTGCAAATAA-AAT------T---GT------GGGTA-CTGG-TACGCATATAAAAATCGGTCTTAA-GCATTTCACTGGTTATCTTTTGTGTAT-TGTATTTCCAAAGAC--TGGGT-TTTACAT--TA---CAAAAGTAGACATTGTGAAATAAACAAA
gi|99832 : CAGTGCTCCAGATAAGCTGC-ATATTT--GC--G--TATTT----CACT-CAAA--T-------AAATTCATGGAAAAC-ACAAACAATTTT---GTTTTTAAGTGCACCCGT-TACTCA-A-AATATTTGCCTTTAACACATAACATTG-----TTTATACA-ATGCGTATT--CAAACATTACTGTA-TTTTCACTTAA---CAG-----GAAACCGTCAGATAAAC
gi|99833 : CAGAGCTTCAGATAAGATGC-GTATTT--GC--G--TATTGAC-GCAAT-TAAA--------AAAAAAGCAATTAAAATA--AAC------C---TT------GCGTA-TC
gi|99834 : CAGTGCTCCAGATAA-GCTC--TATTTAGGG--G--TATTTAA-GCATT-GAAA--TTTCTAAATAAAGCATTGAAA
gi|99835 : CAGAGCTCCAGATAAGATGC-GTATCT--GC--G--TATATGATGCATT-AAAAATTTGT-GGAT-ACGCACCAGATTTGTTTTA------T---GT------GCGTA-TCAATTACGCATA-AGCAA-CGAGTTT
gi|99836 : CAGTGCTCCAGATAAGCTGC-GTATTT--GC--G--TA
gi|99837 : CAGAGCCCAAGATAAGATGC-GTATTT--GC--A--TATATGATGCATT-AAAA--TTG
gi|99838 : CAGAGCCCCAGATAAGATGC-GTATCT--GC--A--TATATGATGCATTAAAAA--TTGATGAA
gi|99839 : CAGTGCTCCAGATAA-GCAC--TATTTGGGG--G--TATGTAA-GTATT-GAAA--TTTCTGAATAAAGCATTGAAATT--TAAA------T---
gi|99840 : CAGTGCTCCAGATAA-GCAC--TATTTTGGA--G--TATTTAA-GCACT-GAAA--TTACTGAATAAAGCATTGAAATT--TAAA------T---
gi|99841 : CAGTGCTCCAGATAA-GCAC--TATTT--GTGGG--TATTTAA-GCATT-GAAA--CTTCTGAATAAAGCATTGAAATT--TAAA------T---
gi|99842 : CAGTGCTCCAGATAAG-CAC--CATTT--GG--GG-TATTTAA-GCATT-GAAA--TCTCTGAATAAAGCATTG-AAATAA-AAA------TTTAGG------GCGTA-
gi|99843 : CAGTGCTCCAGATAAG-CAC--CATTT--GG--GG-TATTTAA-GCATT-GAAA--TCTCTGAATAAAGCATTG-AAATAA-AAA------TTTAGG------GCGTA-
gi|99844 : CAGTGTTCCAGATAAG-CAC-A-ATTT--GG--GGGTATTTAA-GCATT-GAAA--TTTCTGAAAAAAGCATTGGAA
gi|99845 : CAGTGCTCCAGATAA-GCACTATATGG--GG--G--TATTTAA-GCATT-GAAA--TTTCTGAATAAAGCATTGGAAAT--TAAA------T---
gi|99846 : AGTGCTCCAGATAAG-CAC--TATTT--GG--GG-TATTTAA-GCATT-GAAA--TTTCTGAATAAAGCATTGAAA
gi|99847 : TGATCCAGATAAGGTGC-GTATTT--GC--G--TAAATAA-GCATT-GAAA--TTGACAAAAAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGCATAT-CGTATTTCCAAAGAC--CGGGGTTTTTTAC--AA---CGGAAGTAGACACCGTGAAATAAACAAA
gi|99848 : TGCATTT-CGTGTTTCCAAAGAC--CGTG---TTTTAC--AGGATTGAAAAT-GACACCACGAAATAAGCAGA
Alignments
lowQualScore : 44 99 77 222 77 11 5 1 22 999 1 999 666666 888 888888 3 4 4 4 0 4 55 4 55 9999 0
lowQualScore : .. .. .. ... .. .. . . .. ... . ... ...... ... ...... . . . . . . .. . .. .... .
lowQualScore : 55 77 22 555 66 55 5 8 55 555 7 333 888888 222 888888 1 0 0 4 7 0 55 0 55 7777 5
consensus : CAGTGCTCCAGATAAGGCGC-GTATTT--GC--G--TATNTAA-GCATT-GAAA--TTGCCGAANAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGCGTAT-CGTATTTCCAAAGAC--CGGGG-TTTTCAC--AA---CGGAAGTAGACACCGTGAAATAAACAAA
Reference ( family-739 ) : CAGTGCTCCAGATAAGGCGC-GTATTT--GC--G--TATNTAA-GCATT-GAAA--TTGCCGAANAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGCGTAT-CGTATTTCCAAAGAC--CGGGG-TTTTCAC--AA---CGGAAGTAGACACCGTGAAATAAACAAA
gi|99825 : CAGTGCTCCAGATAAGGTGC-GTATTT--GC--G--TAAATAA-GCATT-GAAA--TTGACAAAAAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGGGTAT-CGTATTTCCAAAGAC--CGGGG-TTTTCAC--AA---AGGAAGTAGACACCATGAAATAAACTAA
gi|99826 : CAGTGCTCCAGATAAGGTGC-GTATTT--GC--G--TAAATAA-GCATT-GAAA--TTGACAAAAAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGGGTAT-CGTATTTCCAAAGAC--CGGGG-TTTTCAC--AA---AGGAAGTAGACACCGTCAAATAAACTAA
gi|99827 : CAGTGCTCCAGATAAGGTGC-GTATTT--GC--A--TAAAAAA-GCATT-GAAA--TTGACAAAAAAAGCATTAAAAATAATAAA------T---GT------GTGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGCATAT-CGTATTTCCAAAGAC--CGTGG-TTTTCAC--AA---TGGAAGTAGACACCGTGAAATGAACAAA
gi|99828 : CAGTGCTCCAGATAAGGTGC-GTATTT--GC--G--TAAATAA-GCATT-GAAA--TTGACAAAAAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CTGG-TACGCAAA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGGGTAT-CGTATTTCCAAAGAC--CAGGG-TTTTCAC--AA---AGGAAGTAGACACCGTGAAATAAACCAA
gi|99829 : CAGTGCTCCAGATAAGGTGC-GCATTT--GC--G--TAAATAA-GCATT-GAAA--ATGACAAAAAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCGTTGGCAATCTTGTGTGTAT-CGTATTTCCAAAGAC--TGGGG-TTTTCAC--AA---CGGAAGTAG--ACCGTGAAATAAACAAA
gi|99830 : CAGTGCTCCAGATAAGGTGC-ATATTT--GC--G--TAAATAA-GCATT-GAAA--TTGACAAAAAAAGCATTGAAAATAATAAA------T---GT------GTGTA-CCGG-TACACATA-AACAATTGAATTTAA-GCATTTCATTGGAGATCTTGTGCGTGT-CGTATTTCCAAAGAC--CGGGG-TTTTCAC--A
gi|99831 : CAGGGCTCCAGCTATGGTGC-GTATTT--GT--G--TAAATAA-GAACT-GAAA--TTGC----------ATTGCAAATAA-AAT------T---GT------GGGTA-CTGG-TACGCATATAAAAATCGGTCTTAA-GCATTTCACTGGTTATCTTTTGTGTAT-TGTATTTCCAAAGAC--TGGGT-TTTACAT--TA---CAAAAGTAGACATTGTGAAATAAACAAA
gi|99832 : CAGTGCTCCAGATAAGCTGC-ATATTT--GC--G--TATTT----CACT-CAAA--T-------AAATTCATGGAAAAC-ACAAACAATTTT---GTTTTTAAGTGCACCCGT-TACTCA-A-AATATTTGCCTTTAACACATAACATTG-----TTTATACA-ATGCGTATT--CAAACATTACTGTA-TTTTCACTTAA---CAG-----GAAACCGTCAGATAAAC
gi|99833 : CAGAGCTTCAGATAAGATGC-GTATTT--GC--G--TATTGAC-GCAAT-TAAA--------AAAAAAGCAATTAAAATA--AAC------C---TT------GCGTA-TC
gi|99834 : CAGTGCTCCAGATAA-GCTC--TATTTAGGG--G--TATTTAA-GCATT-GAAA--TTTCTAAATAAAGCATTGAAA
gi|99835 : CAGAGCTCCAGATAAGATGC-GTATCT--GC--G--TATATGATGCATT-AAAAATTTG-TGGAT-ACGCACCAGATTTGTTTTA------T---GT------GCGTA-TCAATTACGCATA-AGCAA-CGAGTTT
gi|99836 : CAGTGCTCCAGATAAGCTGC-GTATTT--GC--G--TA
gi|99837 : CAGAGCCCAAGATAAGATGC-GTATTT--GC--A--TATATGATGCATT-AAAA--TTG
gi|99838 : CAGAGCCCCAGATAAGATGC-GTATCT--GC--A--TATATGATGCATTAAAAA--TTGATGAA
gi|99839 : CAGTGCTCCAGATAA-GCAC--TATTTGGGG--G--TATGTAA-GTATT-GAAA--TTTCTGAATAAAGCATTGAAATT--TAAA------T---
gi|99840 : CAGTGCTCCAGATAA-GCAC--TATTTTGGA--G--TATTTAA-GCACT-GAAA--TTACTGAATAAAGCATTGAAATT--TAAA------T---
gi|99841 : CAGTGCTCCAGATAA-GCAC--TATTT--GTGGG--TATTTAA-GCATT-GAAA--CTTCTGAATAAAGCATTGAAATT--TAAA------T---
gi|99842 : CAGTGCTCCAGATAAG-CAC--CATTT--GG--GG-TATTTAA-GCATT-GAAA--TCTCTGAATAAAGCATTG-AAATAA-AAA------TTTAGG------GCGTA-
gi|99843 : CAGTGCTCCAGATAAG-CAC--CATTT--GG--GG-TATTTAA-GCATT-GAAA--TCTCTGAATAAAGCATTG-AAATAA-AAA------TTTAGG------GCGTA-
gi|99844 : CAGTGTTCCAGATAAG-CAC-A-ATTT--GG--GGGTATTTAA-GCATT-GAAA--TTTCTGAAAAAAGCATTGGAA
gi|99845 : CAGTGCTCCAGATAA-GCACTATATGG--GG--G--TATTTAA-GCATT-GAAA--TTTCTGAATAAAGCATTGGAAAT--TAAA------T---
gi|99846 : AGTGCTCCAGATAAG-CAC--TATTT--GG--GG-TATTTAA-GCATT-GAAA--TTTCTGAATAAAGCATTGAAA
gi|99847 : TGATCCAGATAAGGTGC-GTATTT--GC--G--TAAATAA-GCATT-GAAA--TTGACAAAAAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGCATAT-CGTATTTCCAAAGAC--CGGGGTTTTTTAC--AA---CGGAAGTAGACACCGTGAAATAAACAAA
gi|99848 : TGCATTT-CGTGTTTCCAAAGAC--CGTG---TTTTAC--AGGATTGAAAAT-GACACCACGAAATAAGCAGA
blockSeqs : GG TA AG TGG GG AA T A AT GAC A AAT CAATTT TTA TTTTAA C T T C G TA T TT GATT
blockSeqs : GG G GG C G AA T . . GAC A AAT . TTA . . . . . . . . . A
blockSeqs : GG G TG C G AA T . . GAC A AAT . . . . . . . . . . . T
blockSeqs : GG G . C G AA . . . GAC A AAT . . . . . . . . . . . A
blockSeqs : GG G . C . AA . . . GAC A AAT . . . . . . . . . . . C
blockSeqs : GG A . C . AA . . . TCT A GTT . . . . . . . . . . . C
blockSeqs : GC G . T . TT . . . GAT A AAT . . . . . . . . . . . C
blockSeqs : GA A . C . TT . . . TCT T AA . . . . . . . . . . . C
blockSeqs : GA G . C . TT . . . ACT T AC . . . . . . . . . .
blockSeqs : GC G . G . TA . . . TCT T AA . . . .
blockSeqs : GA G . C . TA . . . TCT T AA . . . .
blockSeqs : GA G . C . TA . . . TCT T A . . . .
blockSeqs : GG G . C . TG . . . TCT T T . .
blockSeqs : G A . C . TT . . . TCT T T . .
blockSeqs : G G . G . TT . . . TCT A T . .
blockSeqs : G . . A . TT . . . GAC T T . .
blockSeqs : G . . G . TT . . . GC T
blockSeqs : G . . G . TT . . . GT A
blockSeqs : G . . G . TT . . . . .
blockSeqs : G . . G . TT . . . .
blockSeqs : G . . G . AA . . .
blockSeqs : G . . C .
blockSeqCons :
originalCons : CAGTGCTCCAGATAAGGCGC-GTATTT--GC--G--TATNTAA-GCATT-GAAA--TTGCCGAANAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGCGTAT-CGTATTTCCAAAGAC--CGGGG-TTTTCAC--AA---CGGAAGTAGACACCGTGAAATAAACAAA
finalCons : CAGTGCTCCAGATAAGGCGC-GTATTT--GC--G--TATNTAA-GCATT-GAAA--TTGCCGAANAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGCGTAT-CGTATTTCCAAAGAC--CGGGG-TTTTCAC--AA---CGGAAGTAGACACCGTGAAATAAACAAA
Alignments
lowQualScore : 44 99 77 222 77 11 5 1 22 999 1 999 666666 888 888888 3 4 4 4 0 4 55 4 55 9999 0
lowQualScore : .. .. .. ... .. .. . . .. ... . ... ...... ... ...... . . . . . . .. . .. .... .
lowQualScore : 55 77 22 555 66 55 5 8 55 555 7 333 888888 222 888888 1 0 0 4 7 0 55 0 55 7777 5
consensus : CAGTGCTCCAGATAAGGCGC-GTATTT--GC--G--TATNTAA-GCATT-GAAA--TTGCCGAANAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGCGTAT-CGTATTTCCAAAGAC--CGGGG-TTTTCAC--AA---CGGAAGTAGACACCGTGAAATAAACAAA
Reference ( family-739 ) : CAGTGCTCCAGATAAGGCGC-GTATTT--GC--G--TATNTAA-GCATT-GAAA--TTGCCGAANAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGCGTAT-CGTATTTCCAAAGAC--CGGGG-TTTTCAC--AA---CGGAAGTAGACACCGTGAAATAAACAAA
gi|99825 : CAGTGCTCCAGATAAGGTGC-GTATTT--GC--G--TAAATAA-GCATT-GAAA--TTGACAAAAAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGGGTAT-CGTATTTCCAAAGAC--CGGGG-TTTTCAC--AA---AGGAAGTAGACACCATGAAATAAACTAA
gi|99826 : CAGTGCTCCAGATAAGGTGC-GTATTT--GC--G--TAAATAA-GCATT-GAAA--TTGACAAAAAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGGGTAT-CGTATTTCCAAAGAC--CGGGG-TTTTCAC--AA---AGGAAGTAGACACCGTCAAATAAACTAA
gi|99827 : CAGTGCTCCAGATAAGGTGC-GTATTT--GC--A--TAAAAAA-GCATT-GAAA--TTGACAAAAAAAGCATTAAAAATAATAAA------T---GT------GTGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGCATAT-CGTATTTCCAAAGAC--CGTGG-TTTTCAC--AA---TGGAAGTAGACACCGTGAAATGAACAAA
gi|99828 : CAGTGCTCCAGATAAGGTGC-GTATTT--GC--G--TAAATAA-GCATT-GAAA--TTGACAAAAAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CTGG-TACGCAAA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGGGTAT-CGTATTTCCAAAGAC--CAGGG-TTTTCAC--AA---AGGAAGTAGACACCGTGAAATAAACCAA
gi|99829 : CAGTGCTCCAGATAAGGTGC-GCATTT--GC--G--TAAATAA-GCATT-GAAA--ATGACAAAAAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCGTTGGCAATCTTGTGTGTAT-CGTATTTCCAAAGAC--TGGGG-TTTTCAC--AA---CGGAAGTAG--ACCGTGAAATAAACAAA
gi|99830 : CAGTGCTCCAGATAAGGTGC-ATATTT--GC--G--TAAATAA-GCATT-GAAA--TTGACAAAAAAAGCATTGAAAATAATAAA------T---GT------GTGTA-CCGG-TACACATA-AACAATTGAATTTAA-GCATTTCATTGGAGATCTTGTGCGTGT-CGTATTTCCAAAGAC--CGGGG-TTTTCAC--A
gi|99831 : CAGGGCTCCAGCTATGGTGC-GTATTT--GT--G--TAAATAA-GAACT-GAAA--TTGC----------ATTGCAAATAA-AAT------T---GT------GGGTA-CTGG-TACGCATATAAAAATCGGTCTTAA-GCATTTCACTGGTTATCTTTTGTGTAT-TGTATTTCCAAAGAC--TGGGT-TTTACAT--TA---CAAAAGTAGACATTGTGAAATAAACAAA
gi|99832 : CAGTGCTCCAGATAAGCTGC-ATATTT--GC--G--TATTT----CACT-CAAA--T-------AAATTCATGGAAAAC-ACAAACAATTTT---GTTTTTAAGTGCACCCGT-TACTCA-A-AATATTTGCCTTTAACACATAACATTG-----TTTATACA-ATGCGTATT--CAAACATTACTGTA-TTTTCACTTAA---CAG-----GAAACCGTCAGATAAAC
gi|99833 : CAGAGCTTCAGATAAGATGC-GTATTT--GC--G--TATTGAC-GCAAT-TAAA--------AAAAAAGCAATTAAAATA--AAC------C---TT------GCGTA-TC
gi|99834 : CAGTGCTCCAGATAA-GCTC--TATTTAGGG--G--TATTTAA-GCATT-GAAA--TTTCTAAATAAAGCATTGAAA
gi|99835 : CAGAGCTCCAGATAAGATGC-GTATCT--GC--G--TATATGATGCATT-AAAAATTTG-TGGAT-ACGCACCAGATTTGTTTTA------T---GT------GCGTA-TCAATTACGCATA-AGCAA-CGAGTTT
gi|99836 : CAGTGCTCCAGATAAGCTGC-GTATTT--GC--G--TA
gi|99837 : CAGAGCCCAAGATAAGATGC-GTATTT--GC--A--TATATGATGCATT-AAAA--TTG
gi|99838 : CAGAGCCCCAGATAAGATGC-GTATCT--GC--A--TATATGATGCATTAAAAA--TTGATGAA
gi|99839 : CAGTGCTCCAGATAA-GCAC--TATTTGGGG--G--TATGTAA-GTATT-GAAA--TTTCTGAATAAAGCATTGAAATT--TAAA------T---
gi|99840 : CAGTGCTCCAGATAA-GCAC--TATTTTGGA--G--TATTTAA-GCACT-GAAA--TTACTGAATAAAGCATTGAAATT--TAAA------T---
gi|99841 : CAGTGCTCCAGATAA-GCAC--TATTT--GTGGG--TATTTAA-GCATT-GAAA--CTTCTGAATAAAGCATTGAAATT--TAAA------T---
gi|99842 : CAGTGCTCCAGATAAG-CAC--CATTT--GG--GG-TATTTAA-GCATT-GAAA--TCTCTGAATAAAGCATTG-AAATAA-AAA------TTTAGG------GCGTA-
gi|99843 : CAGTGCTCCAGATAAG-CAC--CATTT--GG--GG-TATTTAA-GCATT-GAAA--TCTCTGAATAAAGCATTG-AAATAA-AAA------TTTAGG------GCGTA-
gi|99844 : CAGTGTTCCAGATAAG-CAC-A-ATTT--GG--GGGTATTTAA-GCATT-GAAA--TTTCTGAAAAAAGCATTGGAA
gi|99845 : CAGTGCTCCAGATAA-GCACTATATGG--GG--G--TATTTAA-GCATT-GAAA--TTTCTGAATAAAGCATTGGAAAT--TAAA------T---
gi|99846 : AGTGCTCCAGATAAG-CAC--TATTT--GG--GG-TATTTAA-GCATT-GAAA--TTTCTGAATAAAGCATTGAAA
gi|99847 : TGATCCAGATAAGGTGC-GTATTT--GC--G--TAAATAA-GCATT-GAAA--TTGACAAAAAAAGCATTGAAAATAATAAA------T---GT------GCGTA-CCGG-TACGCATA-AACAATTGAATTTAA-GCATTTCATTGGCGATCTTGTGCATAT-CGTATTTCCAAAGAC--CGGGGTTTTTTAC--AA---CGGAAGTAGACACCGTGAAATAAACAAA
gi|99848 : TGCATTT-CGTGTTTCCAAAGAC--CGTG---TTTTAC--AGGATTGAAAAT-GACACCACGAAATAAGCAGA