lowQualScore : 22 444444444444444 9999999999 1111111111 11 33 1111 1 3333333 22222 222 222 22 111111111 66666 777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 00 0 000000000000000 0 9999999999 1111111111 11 5555 3 88 2 3333 5 0 33 1 3 2 555 2 1 4 7777777 44444 7 6 2 777 3 2 4 66666 777 1 88888 66 1 555555555 99999 6 3 1 0 5 2 5 2 666666666666666666666666666666666666666666666666666666666666666666666 555 9 2 4 666 3 77777 3 55 3
lowQualScore : .. . ............... . .......... .......... .. .... . .. . .... . . .. . . . ... . . . ....... ..... . . . ... . . . ..... ... . ..... .. . ......... ..... . . . . . . . . ..................................................................... ... . . . ... . ..... . .. .
lowQualScore : 22 4 888888888888888 3 0000000000 7777777777 00 7777 9 88 4 5555 0 6 44 1 6 5 111 5 9 4 2222222 44444 5 3 1 555 2 9 6 77777 555 1 33333 11 8 000000000 55555 2 3 1 8 5 7 7 9 777777777777777777777777777777777777777777777777777777777777777777777 888 5 8 8 444 1 77777 9 00 6
consensus : ACAGTCTGCAGCGACCTGGTAAACGGTAAACC-C---G-AGAGACGAAGACCGGAACCGACCATTACATCACGTT----------GACGTAC----TTACGTCAGCGTCNGTTGCCA--GCTAC-CTTCGCTGCT---GGG-CGGCAT--GGCGTCTCAGCACA-GACTATTCGT--TA-CCGTTTGCGTCGTAACTCCCAACCAATCAGAGC-GCG-GGCGCCCATACACTAG-ACTGGTCAAATAATGACCCGACGTCACCNCGCTGCCACGCTTTTATGNGCGCGAC-GTCATCTGAACTGGA-----GCTAAATGGCAGCCCA----NGTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----CGGNAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATATCTGGG-TCA----T----------N------A------------------A----------AC-----C---A-----CCAAAATGATAAT---CTCTGTGATTTGGCTCAGGCGTTGCNA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTG-----CGTTACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
Reference ( gi|111149 ) : ACAGTC-ACAGCGACCTGGTAAACGGTAAACC-T---GTAGAGACAAAGACCGGAACCGA----------ACGTT----------GACGTGC----TTACGTCAGTGTCTGTTGCCACGGCTAC-CTTCGCTGCT---TGG-CAGCAT--GGCGTTTCAGTACA-GACTATTCGT--TA-CCGTTTGCGTCGTAACTCCCAACTAATAAGAGT-GCGAAGCGCCCATACACTAGAACTGGTCAAATAATGACCTGACGTTACCTCGCTGCCATTATTTTATGTGTGCGAC-GTCATCTGAACTGAA-----GTTAAATGGCAGCCCA----TGTTCACCTTGCAATACTTG------AACCAGGTCAATGTTTTCACATGGCATGGTCGGAAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATATTTGGG-TCA----T----------T------A------------------A----------AC-----C---A-----CCAAAATGATAAT---CTCTATGATTTAGCTTAGGCGTTGCTA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTG-----CGTTACGTTACGTCGAAACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
gi|111150 : ACAGTC-ACAGCGACCTGGTAAA-GGTAAACC-T---GTAGAGACAAAGACCGGAACCGA----------ACATT----------GACGGTC----TTACGTCAGTGTCTGTTGCCACGGCTAC-CTTCGCTGCT---TGG-CAGCAT--GGCGTTTCAGTACA-GAATATTCGT--TA-CCGTTTGCGTCGTAACTCCCAACTAATCAGAGT-GCGAGGCGCCCATACATTAGAACTGGTCAAATAATGACCCGACGTTACCTCACTGCCATGCTTTTATGTGTGCGAC-GTCATCTGAACTGGA-----GTTAAATGGCAGCCCA----TGTTCACCAGGTAATACTTG------AACCAGGTCAATGTTTTCACATGGCATGGCCGGAAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATATCTGGG-TCA----T----------T------A------------------A----------AC-----C---A-----CCAAAATGATAAT---CTCTGTGATTTAGTTTAGGCGTTGCTA-CGGAGACCGAGGAATTTGCCAAATG-CATTGGTTTTG-----CGTTACGTTACGTCGAAACGCCGTAAACTTATTGAAT--ACCTAC-CTGCA
gi|111151 : ACAGTC-GCAGCGACCTCGTAAACGGTAAACC-T---GGAGAGACAAAGACCGGAACCGA----------ACGTT----------GACGTAC----TTACGTCGGTGTCTGTTGTTA--GTTAC-CTTCGCTGCT---GGG-CAGCAT--GGCGTTTCAGTACA-GACTATCTGT--TA-CCGTTTGCGACGTAACTCCCAACTAATCAGAGTAGCGCGGCGCCCATACACTAGAACTGGTCAAATAATGACCCGACGTTACCTTGCTGCCATGCTTGTATGTGTGCAAC-GTCATCTGAACTGGA-----GCTAAATGGCAGCCCA----TGTTCACCAGGCA-TACTTG------ACCCAGCTGAATGTTTTCACATGGC-----CGGAAGTTTCTCTTGATCCTTGCAAAAAAATAAGAATATCTGGG-TCA----T----------------------------------------------------------A-------AAAATGATAAT---CTCTGTGATTTGGCTCAGGCGTTGCTA-CGGTGATCGAGGAATTTGCCAAATG-CATTGGTTTTG-----CGTTACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
gi|111152 : ACAGTC-GCAGCTACCTCGTAAACGGTAAACC-T---GGAGAGACAAAGACTGGAACC-A----------ACGTT----------GACATAC----TTACGTTAGTGTCTGTTGCCA--GCTTC-CTTCGCTGCT---GGG-CAGCAT--GGCGTTTCAGTACA-GACTATTCGT--TA-TCGTTTACGTCGTAACTCCCAACTAATCAGAGTAGCGCGGCGCCCAAACACTAGTACTGGTCAAATAATGACCCGACGTCACATCGCTGCCATGTTTTTATGTGTGCAAC-GTCATCTGAACTGGA-----GCTAAATGGCAGCCCA----TGTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----CGGAAGTTTCCCTTGATCCTTGCAAAAAT-TAAGAATATCTGGG-TCA---------------T------A------------------------------------------------AAAATGATAAT---CTCTGTAATTTGGCTCAGGTGTTGCTA-CGGTGATCGAGTAATATGCAAAATG-CATCGGTTTTG-----CGTTACGTTACGTCGAGACTCCGTTAAATTATTGAAT--ACATAC-CTGCA
gi|111153 : ACAGTCTGCAGCGACCTGGTAAAC-------C-T---GGATAGACAAAGACCGGAACCGAACGTTACATCACGTT----------GACGTAC----TTACGTCAGCGTCTGTTCCCA--GCTAT-CTTTGCTGCT---GGG-TAGCAT--GGCGTCTCAG-----------------TA-CCGTTTGCGTCGTAATTCCCAACTTATCAGAGTAGCGTGGCGCCCATACACTAGTACTGGAAAAATAATTACCTGTCGTCACCTTGCTGCCATGCTTTTATGTGTGCTAC-GTCATCTGAAATGAA-----GCTAAATTGAAGCCTA----GGTTCACCAGACAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-TGG
gi|111154 : ACAGTC-GCACCGACCTGGTA-------AACC-T---GTAGAGACAAAGACCGGAACCGA----------ACGTT----------GACGTGC----TTACGTCAGTATCTGTTGCCACGGCTAC-CTTCGCTGCT---GGG-CAGCAC--GGCATTTCAGTACA-GAATATTCGT--TA-CCGTTAACGTCGTAACTCCCAACTaagct
gi|111155 : ACTGTC-CCAGCGACCTCGTAAACGGTAAACC-T---GGAGAGACAAAGACCGGGACCGA----------ATGTT----------GACGTAC----TTACGTCAGTGTCTGTTGCCA--GCTAC-CTTCGCTGCT---GGA-CAGCAT--GACGTTTCAGTACA-GACTATTCGT--TA-CCGT
gi|111156 : ACAGTTTGCAGCGACCTGGTAAAC------CC-C---G-AGAGACGAACACCGGAGCCGACAAT------ACATC-----------ACAT-C----TTACGTCAGCGT----TGCCA--GCCAC-CTTCACATCT---GTG-CGGCAT--GATGTATCGGCACA-GACTATTCCT--AA-TCGTTTGCGTCGTAACTCACAACCAATCAGAG
gi|111157 : ACAGTCTGCAGCGACCTGGTAAACGGCG------------GAGACAAAGACCGGAACCGA----------ACGTTACATCACTTTGACGTAC----TTACGTCAGCGTCTGTTGCCA--GTTAC-CT
gi|111158 : CAGCGACCTGGTAAAC-------C-C---AAAGAGACAA-GAACGGATTCGACCATTATACCACGTT----------TACACTC----TTACGTCAGCGTCGGTTGCCA-GAC-AC-CTTCACTGCT---TGGGCGGCAT--GGTGTCTCTGCACT-GACTATTCGT--TA-TCGTTTGCGTC-------CCGACCAATGA-AGC-ACG--GCGCCTATACACT------GGTCAAATGATAACCCAGCGTCATTGTGCTGCCACGATTTTATGGGCACGAC-GTCACCTGAACTTGA-----G---AATGGCAGACCA----GGTTCACATGGCAATATTTG------GCACATATCAATGTTTTCACATG---TG--CGATAGTT-------ATC------AAAAT-TAAGAATAACTTGG-CCA----TAAAGCGAGAGC------A------------------A----------AC-----A---A-----CCAAAATAATAAT---CATTGTGATTTGACTAAGGCGTTGCAG-CGGGAATTCAGGTATTTGCTAAATG-CGTTGGTTTTG-----CGTAACGTAACGTCGAAACGCCGTTTAGTTATTGAAT--ATATAC-CTGCA
gi|111159 : CAGCGACTTGGT-----GTA--CC-C---G-AGAGACGAAGACCAGAACCGACCATAACACCACGTT----------GACA--C----TTACGTCGGCGTCGGTTGCCA--GCTAC-CTTCACTGCT---GGG-TGGCAT--GGTGTCTCAGCACA-GACTATTCGT--CA-TCGTTTGCGTCGTATCTTCAAACCAAACAAAGC-ATG--GCGCCAATA------GATTGGGCAAATAATAAACCGACGT--CCTTGC-GCCGCAA-------CGTGCGAC-GTCATCTGAACTGGA-----G---AATGGCAGTCCT----GGTTGACCTGGCAATACTTA------ATACAGATCAATGTTTTCACACGGC-----CAGTAG-TTCCCCTGATCCTTACCAAAAT-TGAGAATAT
gi|111160 : CAGCGACCTGGTA---GG----CC-TCGTGTAACGAC---GGCTAGAGCCGATCGTTTCATTACGTT----------GACGCAC----TTACGTCAACGTCAATCGGCA--GCCAC-AGTCACTGCT---ATG-CAATAC--GGTGTCTCAGGGCA-GACCATTCGC--AA-CCGGTTGCGTCGTAACGTCCAACCAATCAGGGC-ACG--CCGCCCGTAC------ACTGGTCAGATAATGACCCAACGTCACCGTGATGCCAGGCTGTTATGGGCGCGAC-ATCATCTGATTTGGAGAAGGGTTGACTGG-AACCAAGTTTTGTTCACCcacatgatggtcaca
gi|111161 : CAGCGACCTGGTAAAC------CC-C---G-AGAGACGAAGACCGGAACCGACTATTACACCACGTA----------GGCGCAC----TTACGTCAGCGTCGGTTGCCA--GCCAT-CTTCACAGCT---TGA-CGGCAT--GGTGTCTCGGCACA-GACTA-TCGT--AA-TAATTTGTGTCGCAACTCCCAACGAACCAGAG
gi|111162 : AGAGACCTGGTGAAC----AAC------G-AGAAACGATGACCGGAACCGACCATTACATCACCTT----------GACGGGCGCACTTACGTCGGCGTCGGTTGCCA--GCCAA-ATTCACTGCT---GGG-AGGCAT--GGTGTCTCAGCACA-AACTACTGGT--AA-TCGTTTG------------CAATCAATCAGAAC-CCG--GCGCCTATTCACTA------GTCAAATAATGAACCGACGTCATCGCGCTGTCA-GGCTTTATCGACGCGATGGTCATCTGAACCGGA-----G---AATGGCAGACCA----GGTTCACCAGGCAATACTTca
gi|111163 : GGTAAACCCT---G-AGAGATGAAGACCAGAATTGACCATTACATTACATT----------GACGGAC----TTACGTCAGTG------GCCA--GCCAC-CTTCACTGCT---GGG-CGCTAT--GGTGTCTCGACACAAGACTATTCAT--AA-TCGTTTATGTCA-------CAACCAATCAGAG----------------CA-------TGGTCAAATAATGACCCGACGTCACTGCGCTACCACGTTTTTATGGGCGCGAT-GTCATCTGAACTGAA-----G---AATGGCAGACCA----GATTCACTGGGCA----------------CAGATCAATGTTTTCACATGGC-----CGGTAGTTGCCCATGACCTTTACCAAAAT-TGAGATTATCTG----CA----T----------T------A------------------
gi|111164 : AGAGACGATGACCGGAACCGACCATTACATCACGTT----------GACGCAC----TTACGTCAGCGTCGGTTGCCAC--CCAC-CTTCACTGCT---GGG-AGGCAT--AGTGTCTCGGCACA-G-----TCGTGATAATCGTTTGCGTAGTAAATTCCCACAAATCAGAGC-ACG----GC------------ACTGGTCAAATAATGACC---CGTCACCGCACTGCCATGCTTTTATGGGCGCGAC-GTCATCTGGACTGGA-----G---AATGGCAGACCA----GGTTCGCCGGGCAGTACTTG------GCACAGATCAATGTTTTCAGATTGC-----CGGTAGTTTTCCCTGCTTCTTAC-CAAAT-TGAGAATATCTGGG-TCA---------------T------A------------------A----------AG-----CGAGA-----GCAAAA-----------TCTTTGA---AG---------------CGAGAATCTTGGAATGTGCCAAATG-CATTGGTTTTG-----CGTTATGTTACGTCGAGGTGCCGTCAAATTATTGtaaa
gi|111165 : GCCATGGCTAC-CTTCGCTGCTGGCTGGGCATCAT--GCC--TAGAGTACG-GACTATTCGT--TA-CCGTTTGCGTCGTAACTCCCAACTAATCACAGT-GCACGGCGCCCATACACTAGAACTGGTCAAATAATGATCCGACATCACCTCGCTGCCATGCTTTTATGTGTGCGAC-GTCATCT----------------AAATGGCAGCCCA----TGTTCACCAGGCAATACTTG------AACCAGGTCAATGTTTTCACATGGC-----CGGAAGTTTCCATTGATCCTTGCAAAAAT-TGAGAACATCTAGG-TCA----T----------A------A------------------A----------AC-----C---A-----CCAAAATGATAAT---CTCTGTGATTAAGTTTAGGCGTTGCTA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTG-----CGTTACGTTACGTCGAGACGCCGGAAAATTATTGAAT--ACATAC-CTGCA
gi|111166 : TACTCTTCACAGCT---GGG-T-GCATTTGGTGTCTCAGGACA-GACTACCGGT--AA-TCATTTGCGTGGTAACTC----------AGAGC-ACG--GCGCCCATACACC------GGTCAAATAATGACCCGACGTCACCGGGCTTCCACGCTTTAATGGGCGATAT-GTCATTTTAACAAGA-----G---AATGGCAGATCA----GGTTCACCAGGCAATACATG------GTACAGATCAATGTTCTCACATGGC------------------TGATCCTTACCAAAAT-TGATATTGTTTAGG-TCA----T----------A------AAGCGAGAGCG--------A----------AC-----C---A-----CCAAAATGATAAT---CTTTCTGATTTGACTCAGGCGTTGCAG-CGAGAATCGGGGAA------------------TTTTG-----CGTAATGTTACGTCGAGGCGCAGTACAATTATTGAAT--ACATAC-CTGTA
gi|111167 : TAATGACCCGACGTCACATCGCTGCCATGTTTTTATGTGTGCGAC-GTCATCTGAACTGGA-----GCTAAATGGCAGCCCA----TGTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTCTCACATGGC-----CGGAAGTTTCCCTTGGTCCTTGCAAAAGT-TAAGAATATCTGGG-TCA----T----------A------A------------------A----------A
gi|111168 : C-GTCATCTGAACAAGA-----G---AATGACAGATCA----T----ACTTAGCA----------------TAGATCAATGTTTTCGCATGAC-----CGGTAGTTTCCCCTGATCCATACCAATAT-TAAGAATTTCTGGG-TCG----T----------A------A------------------AGAGAGGGCAGAC-----C---A-----CC-AAATGGTTCT---CTTTTTGATTTGATTAATGCGTTGCAACCGGGAATCGATGAATTTGCCAAATG-CATTGGTTTTA-----CATTACG--ATGT------GCCGTAGAATTATTGAAT--ACATAC-CTGCA
gi|111169 : TCGGAACTGGA-----GCTAAATGGCAGCCCA----TGTTCACAAGGCAATACTTG------AACCAGGTCAATGTTTTCACATGGC-----CGGAAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATACCTGGG-TCA----T----------A------A------------------A----------AC-----C---A-----CCAAAATGATAAT---CTCTTTTATTTAGCTTAGGCGTTGCTA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTG-----GGTTACGTTACGTGGAGACGCCGTAAAATTATTAAAA--ACACACACTG
gi|111170 : CCA----GGGTCACCACTCAATTCTTGCAGCAAAACAATGTCAACGT-----CATGCCATGGCCCGCGGTTTCCCCGGATC-TCACATA----TGAGCACATATGGGATCAG---C----------T------GGGCCGCAAAGCACGAGCTA----------AC-----C---A-----TCAGATTGACAAT---GTTCGCGATCTTACACGGGCGTTACAA-CAGGAATGGAGGAATTTGCCCAACG-CACTGGTATTG-----CGTTACGTTACGTCGATGCGGCATAAGATCATTGCTT--GCATTC-ATGCA
gi|111171 : AGATCAAAGTGTTCACATGGC-TGGT----AGTTT------ATC------AAAAT-TGAGAATATCTGTG-TCA----T----------A------A------------------A----------GCGAGAGC---AATGAACAAAAATGATGATTATCTTTGTGATTTGACTCAGGCGTTTCAG-CGGGAATCGAGGATTTTGCTAAATG-CATTGGTTTTG-----CGTTACGTCACGTCGAAAAGCTGTAAAATTATTGAATACACATAC-CTGCA
gi|111172 : TCAATGTTTCCATATGGC-----CGGTAGTTTCCAATGATCCTTACCAAAAT-TGAGAATAACTGGG-TTACAAAT----------TGAGAGCA------------------A----------AC-----C---A-----CCAAA-TGATAAT---CTTTGTGATCTTACTCCGGTGTTGCGG-CGGGAATCGAGGAATTTGCGAAATGAAATTGGTTTTG-----CGT
gi|111173 : GCTG-CGGGGATCGAGGAATTTGCCTAATG-CAATGGTTTTGCGTTACGTTACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTACA
Alignments
lowQualScore : 2 333333333333 2222222222 11 33333 22222222 222 11111 1111111111 44444444444444444444444444444444444444444444444
lowQualScore : 1 555555555555 1 6666666666 77777 2 22 2 2 33 33 2 2 2 6666 1 00000 3 33333333 1 2 2 2 333 2 1 777777 2 11111 1 2 0 0 4 2 0000000000 444 33 88888888888888888888888888888888888888888888888 0 555 0 0 222 2 77777 44 3
lowQualScore : . ............ . .......... ..... . .. . . .. .. . . . .... . ..... . ........ . . . . ... . . ...... . ..... . . . . . . .......... ... .. ............................................... . ... . . ... . ..... .. .
lowQualScore : 6 888888888888 1 9999999999 00000 8 99 2 4 22 22 4 5 4 6666 4 77777 1 22222222 0 7 0 7 111 7 9 777777 1 88888 8 5 4 1 6 5 9999999999 444 44 88888888888888888888888888888888888888888888888 4 444 7 7 999 9 77777 66 3
consensus : ACAGTCTGCAGCGACCTGGTAAACGGTAAACCC-G-AGAGACGAAGACCGGAACCGACCGTTACATCACGTTGACG----CACTTACGTCAGCGTCTGTTGCCA--GCTAC-CTTCGCTGC-TGG--GCGGCAT--GGCGTCTC-AGCACA-GACTATTCGT--T-ACCGTTTGCGTCGTAACTCCCAACCAATCAGAGC-GCG-G-GCGCCCATACACTAG-A-CTGGTCAAATAATGACCCGACGTCACCGCGCTGCCACGCTTTTATGNGCGCGAC-GTCATCTGAACTGGAGCTAAATGGCAGCCCAGGTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----CGGNAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATAT----------C---TG--GGTCAT----------AA----------A----------AC-----CA-----CCAAAATGATAAT---CTCTGTGATTTGGCTCAGGCGTTGCNA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
Reference ( family-736 ) : ACAGTCTGCAGCGACCTGGTAAACGGTAAACCC-G-AGAGACGAAGACCGGAACCGACCATTACATCACGTTGACG----TACTTACGTCAGCGTCNGTTGCCA--GCTAC-CTTCGCTGC-TGG--GCGGCAT--GGCGTCTC-AGCACA-GACTATTCGT--T-ACCGTTTGCGTCGTAACTCCCAACCAATCAGAGC-GCG-G-GCGCCCATACACTAG-A-CTGGTCAAATAATGACCCGACGTCACCNCGCTGCCACGCTTTTATGNGCGCGAC-GTCATCTGAACTGGAGCTAAATGGCAGCCCANGTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----CGGNAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATAT----------C---TG--GGTCAT----------NA----------A----------AC-----CA-----CCAAAATGATAAT---CTCTGTGATTTGGCTCAGGCGTTGCNA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
gi|111149 : ACAGTC-ACAGCGACCTGGTAAACGGTAAACCT-GTAGAGACAAAGACCGGAACCGA----------ACGTTGACG----TGCTTACGTCAGTGTCTGTTGCCACGGCTAC-CTTCGCTGC-TTG--GCAGCAT--GGCGTTTC-AGTACA-GACTATTCGT--T-ACCGTTTGCGTCGTAACTCCCAACTAATAAGAGT-GCG-AAGCGCCCATACACTAG-AACTGGTCAAATAATGACCTGACGTTACCTCGCTGCCATTATTTTATGTGTGCGAC-GTCATCTGAACTGAAGTTAAATGGCAGCCCATGTTCACCTTGCAATACTTG------AACCAGGTCAATGTTTTCACATGGCATGGTCGGAAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATAT----------T---TG--GGTCAT----------TA----------A----------AC-----CA-----CCAAAATGATAAT---CTCTATGATTTAGCTTAGGCGTTGCTA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAAACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
gi|111150 : ACAGTC-ACAGCGACCTGGTAAA-GGTAAACCT-GTAGAGACAAAGACCGGAACCGA----------ACATTGACG----GTCTTACGTCAGTGTCTGTTGCCACGGCTAC-CTTCGCTGC-TTG--GCAGCAT--GGCGTTTC-AGTACA-GAATATTCGT--T-ACCGTTTGCGTCGTAACTCCCAACTAATCAGAGT-GCGAG-GCGCCCATACATTAG-AACTGGTCAAATAATGACCCGACGTTACCTCACTGCCATGCTTTTATGTGTGCGAC-GTCATCTGAACTGGAGTTAAATGGCAGCCCATGTTCACCAGGTAATACTTG------AACCAGGTCAATGTTTTCACATGGCATGGCCGGAAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATAT----------C---TG--GGTCAT----------TA----------A----------AC-----CA-----CCAAAATGATAAT---CTCTGTGATTTAGTTTAGGCGTTGCTA-CGGAGACCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAAACGCCGTAAACTTATTGAAT--ACCTAC-CTGCA
gi|111151 : ACAGTC-GCAGCGACCTCGTAAACGGTAAACCT-GGAGAGACAAAGACCGGAACCGA----------ACGTTGACG----TACTTACGTCGGTGTCTGTTGTTA--GTTAC-CTTCGCTGC-TGG--GCAGCAT--GGCGTTTC-AGTACA-GACTATCTGT--T-ACCGTTTGCGACGTAACTCCCAACTAATCAGAGTAGCGCG-GCGCCCATACACTAG-AACTGGTCAAATAATGACCCGACGTTACCTTGCTGCCATGCTTGTATGTGTGCAAC-GTCATCTGAACTGGAGCTAAATGGCAGCCCATGTTCACCAGGCA-TACTTG------ACCCAGCTGAATGTTTTCACATGGC-----CGGAAGTTTCTCTTGATCCTTGCAAAAAAATAAGAATAT----------C---TG--GGTCAT----------AA----------A----------A------------------ATGATAAT---CTCTGTGATTTGGCTCAGGCGTTGCTA-CGGTGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
gi|111152 : ACAGTC-GCAGCTACCTCGTAAACGGTAAACCT-GGAGAGACAAAGACTGGAACCAAC-----------GTTGACA----TACTTACGTTAGTGTCTGTTGCCA--GCTTC-CTTCGCTGC-TGG--GCAGCAT--GGCGTTTC-AGTACA-GACTATTCGT--T-ATCGTTTACGTCGTAACTCCCAACTAATCAGAGTAGCGCG-GCGCCCAAACACTAGTA-CTGGTCAAATAATGACCCGACGTCACATCGCTGCCATGTTTTTATGTGTGCAAC-GTCATCTGAACTGGAGCTAAATGGCAGCCCATGTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----CGGAAGTTTCCCTTGATCCTTGCAAAAAT-TAAGAATAT----------C---TG--GGTCAT----------A--------------------------------------AAAATGATAAT---CTCTGTAATTTGGCTCAGGTGTTGCTA-CGGTGATCGAGTAATATGCAAAATG-CATCGGTTTTGCGTT-----ACGTTACGTCGAGACTCCGTTAAATTATTGAAT--ACATAC-CTGCA
gi|111153 : ACAGTCTGCAGCGACCTGGTAAAC------CTG-G-ATAGACAAAGACCGGAACCGAACGTTACATCACGTTGACG----TACTTACGTCAGCGTCTGTTCCCA--GCTAT-CTTTGCTGC-TGG--GTAGCAT--GGCGTCTC-AG-----------------T-ACCGTTTGCGTCGTAATTCCCAACTTATCAGAGTAGCGTG-GCGCCCATACACTAGTA-CTGGAAAAATAATTACCTGTCGTCACCTTGCTGCCATGCTTTTATGTGTGCTAC-GTCATCTGAAATGAAGCTAAATTGAAGCCTAGGTTCACCAGACAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----TGGAAGCT
gi|111154 : ACAGTC-GCACCGACCTGGTAAAC-------CT-GTAGAGACAAAGACCGGAACCGA----------ACGTTGACG----TGCTTACGTCAGTATCTGTTGCCACGGCTAC-CTTCGCTGC-TGG--GCAGCAC--GGCATTTC-AGTACA-GAATATTCGT--T-ACCGTTAACGTCGTAACTCCCAAC
gi|111155 : CAGCGACCTCGTAAACGGTAAACCT-GGAGAGACAAAGACCGGGACCGA----------ATGTTGACG----TACTTACGTCAGTGTCTGTTGCCA--GCTAC-CTTCGCTGC-TGG--ACAGCAT--GACGTTTC-AGTACA-GACTATTCGT--T-ACCGTt
gi|111156 : actgtccACAGTTTGCAGCGACCTGGTAAAC------CCC-G-AGAGACGAACACCGGAGCCGACAAT-ACATCACAT-----------CTTACGTCAGCGT----TGCCA--GCCAC-CTTCACATC-TGT--GCGGCAT--GATGTATC-GGCACA-GACTATTCCT--A-ATCGTTTGCGTCGTAACTCACAACCAATCAGAG
gi|111157 : ACAGTCTGCAGCGACCTGGTAAACGG------C-G--GAGACAAAGACCGGAACCGAACGTTACATCACTTTGACG----TACTTACGTCAGCGTCTGTTGCCA--GTTAC-CT
gi|111158 : CAGCGACCTGGTAAAC------CCA-A-AGAGAC-AAGAACGGATTCGACCATTATACCACGTTTACA----CTCTTACGTCAGCGTCGGTTGCCA--GACAC-CTTCACTGCTTGG--GCGGCAT--GGTGTCTC-TGCACT-GACTATTCGT--T-ATCGTTTGCG-------TCCCGACCAATGA-AGC-AC--G-GCGCCTATAC------A-CTGGTCAAATGATAACCCAGCGTCATTGTGCTGCCACGATTTTATGGGCACGAC-GTCACCTGAACTTGAG---AATGGCAGACCAGGTTCACATGGCAATATTTG------GCACATATCAATGTTTTCACATGTG-----CGATAGTT-------ATC------AAAAT-TAAGAATAA----------C---TT--GGCCATAAAGCGAGAGCA----------A----------AC-----AA-----CCAAAATAATAAT---CATTGTGATTTGACTAAGGCGTTGCAG-CGGGAATTCAGGTATTTGCTAAATG-CGTTGGTTTTGCGTA-----ACGTAACGTCGAAACGCCGTTTAGTTATTGAAT--ATATAC-CTGCA
gi|111159 : CAGCGACTTGGT-----GTA--CCC-G-AGAGACGAAGACCAGAACCGACCATAACACCACGTTGAC------ACTTACGTCGGCGTCGGTTGCCA--GCTAC-CTTCACTGC-TGG--GTGGCAT--GGTGTCTC-AGCACA-GACTATTCGT--C-ATCGTTTGCGTCGTATCTTCAAACCAAACAAAGC-AT--G-GCGC-----CAATAG-A-TTGGGCAAATAATAAACCGACGTCCTTGCGCCGCAAC----------GTGCGAC-GTCATCTGAACTGGAG---AATGGCAGTCCTGGTTGACCTGGCAATACTTA------ATACAGATCAATGTTTTCACACGGC-----CAGTAG-TTCCCCTGATCCTTACCAAAAT-TGAGAATAT----------CACATGATGGTCA
gi|111160 : CAGCGACCTGGTAGGC------CTC-G-TGTAACGACGGCTAGAGCCGATCGTTTCATTACGTTGACG----CACTTACGTCAACGTCAATCGGCA--GCCAC-AGTCACTGC-TAT--GCAATAC--GGTGTCTC-AGGGCA-GACCATTCGC--A-ACCGGTTGCGTCGTAACGTCCAACCAATCAGGGC-AC--G-CCGCCCGTAC------A-CTGGTCAGATAATGACCCAACGTCACCGTGATGCCAGGCTGTTATGGGCGCGAC-ATCATCTGATTTGGAGca
gi|111161 : CAGCGACCTGGTAAAC------CCC-G-AGAGACGAAGACCGGAACCGACTATTACACCACGTAGGCG----CACTTACGTCAGCGTCGGTTGCCA--GCCAT-CTTCACAGC-TTG--ACGGCAT--GGTGTCTC-GGCACA-GACTA-TCGT--A-ATAATTTGTGTCGCAACTCCCAACGAACCAGAGC-aagggttgactggaaccaagttttgttcacc
gi|111162 : AGAGACCTGGTGAAC----AAC---G-AGAAACGATGACCGGAACCGACCATTACATCACCTTGACGGGCGCACTTACGTCGGCGTCGGTTGCCA--GCCAA-ATTCACTGC-TGG--GAGGCAT--GGTGTCTC-AGCACA-AACTACTGGT--A-ATCGTTTG------------CAATCAATCAGAAC--CC-G-GCGCCTATTCACTA-------GTCAAATAATGAACCGACGTCATCGCGCTGTCAGGC-TTTATCGACGCGATGGTCATCTGAACCGGAG---AATGGCAGACCAGGTTCACCAGGCAATACTTa
gi|111163 : GGTAAACCCTG-AGAGATGAAGACCAGAATTGACCATTACATTACATTGACG----GACTTACGTCAGTG------GCCA--GCCAC-CTTCACTGC-TGG--GCGCTAT--GGTGTCTC-GACACAAGACTATTCAT--A-ATCGTTTATGTCA-------CAACCAATCAGAGC-A------------------------TGGTCAAATAATGACCCGACGTCACTGCGCTACCACGTTTTTATGGGCGCGAT-GTCATCTGAACTGAAG---AATGGCAGACCAGATTCACTGGGCA----------------CAGATCAATGTTTTCACATGGC-----CGGTAGTTGCCCATGACCTTTACCAAAAT-TGAGATTAT----------C---TG--CATTAT----------AA----------A----------
gi|111164 : -AGAGACGATGACCGGAACCGACCATTACATCACGTTGACG----CACTTACGTCAGCGTCGGTTGCCA--CCCAC-CTTCACTGC-TGG--GAGGCAT--AGTGTCTC-GGCACA-G-----TCGTGATAATCGTTTGCGTAGTAAATTCCCACAAATCAGAGC-AC--G-GC--------------A-CTGGTCAAATAATGACC---CGTCACCGCACTGCCATGCTTTTATGGGCGCGAC-GTCATCTGGACTGGAG---AATGGCAGACCAGGTTCGCCGGGCAGTACTTG------GCACAGATCAATGTTTTCAGATTGC-----CGGTAGTTTTCCCTGCTTCTTAC-CAAAT-TGAGAATAT----------C---TG--GGTCAT----------AA----------A----------GCGA---GA-----GCAAAA-----------TCTTTGA--------AG----------CGAGAATCTTGGAATGTGCCAAATG-CATTGGTTTTGCGTT-----ATGTTACGTCGAGGTGCCGTCAAATTATTG
gi|111165 : GCCATGGCTAC-CTTCGCTGC-TGGCTG-GGCAT--CATGCCTAGAGTACG-GACTATTCGT--T-ACCGTTTGCGTCGTAACTCCCAACTAATCACAGT-GCACG-GCGCCCATACACTAG-AACTGGTCAAATAATGATCCGACATCACCTCGCTGCCATGCTTTTATGTGTGCGAC-GTCATCT-----------AAATGGCAGCCCATGTTCACCAGGCAATACTTG------AACCAGGTCAATGTTTTCACATGGC-----CGGAAGTTTCCATTGATCCTTGCAAAAAT-TGAGAACAT----------C---TA--GGTCAT----------AA----------A----------AC-----CA-----CCAAAATGATAAT---CTCTGTGATTAAGTTTAGGCGTTGCTA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAGACGCCGGAAAATTATTGAAT--ACATAC-CTGCA
gi|111166 : TACTCTTCACAGC-TGG--GTG-CATTTGGTGTCTC-AGGACA-GACTACCGGT--A-ATCATTTGCGTGGTAACTC----------AGAGC-ACG-G--CGCCCATACACC-------GGTCAAATAATGACCCGACGTCACCGGGCTTCCACGCTTTAATGGGCGATAT-GTCATTTTAACAAGAG---AATGGCAGATCAGGTTCACCAGGCAATACATG------GTACAGATCAATGTTCTCACATGGC------------------TGATCCTTACCAAAAT-TGATATTGT----------T---TA--GGTCAT----------AAAGCGAGAGCGA----------AC-----CA-----CCAAAATGATAAT---CTTTCTGATTTGACTCAGGCGTTGCAG-CGAGAATCGGGGAA------------------TTTTGCGTA-----ATGTTACGTCGAGGCGCAGTACAATTATTGAAT--ACATAC-CTGTA
gi|111167 : TAATGACCCGACGTCACATCGCTGCCATGTTTTTATGTGTGCGAC-GTCATCTGAACTGGAGCTAAATGGCAGCCCATGTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTCTCACATGGC-----CGGAAGTTTCCCTTGGTCCTTGCAAAAGT-TAAGAATAT----------C---TG--GGTCAT----------AA----------A----------A
gi|111168 : C-GTCATCTGAACAAGAG---AATGACAG---------ATCA-----TACTTA------GCATAGATCAATGTTTTCGCATGAC-----CGGTAGTTTCCCCTGATCCATACCAATAT-TAAGAATTT----------C---TG--GGTCGT----------AA----------AGAGAGGGCAGAC-----CA-----CC-AAATGGTTCT---CTTTTTGATTTGATTAATGCGTTGCAACCGGGAATCGATGAATTTGCCAAATG-CATTGGTTTTACATT-----ACG--ATGT------GCCGTAGAATTATTGAAT--ACATAC-CTGCA
gi|111169 : TCGGAACTGGAGCTAAATGGCAGCCCATGTTCACAAGGCAATACTTG------AACCAGGTCAATGTTTTCACATGGC-----CGGAAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATAC----------C---TG--GGTCAT----------AA----------A----------AC-----CA-----CCAAAATGATAAT---CTCTTTTATTTAGCTTAGGCGTTGCTA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGGGTT-----ACGTTACGTGGAGACGCCGTAAAATTATTAAAA--ACACACACTG
gi|111170 : CCAGGGTCACCACTCAATTCTTGCAGCAAAACAATGTCAACGTCATGCCATGGC-----CCGCGGTTTCCCCGGATC-TCACATA----TGAGCACATATGGGATCAGC---TG--GGCCGC----------AA----------AGCACGAGCTAAC-----CA-----TCAGATTGACAAT---GTTCGCGATCTTACACGGGCGTTACAA-CAGGAATGGAGGAATTTGCCCAACG-CACTGGTATTGCGTT-----ACGTTACGTCGATGCGGCATAAGATCATTGCTT--GCATTC-ATGCA
gi|111171 : AGATCAAAGTGTTCACATGGC-----TGGTAGTTT------ATC------AAAAT-TGAGAATAT----------C---TG--TGTCAT----------AA----------A----------GCGAGAGCAATGAACAAAAATGATGATTATCTTTGTGATTTGACTCAGGCGTTTCAG-CGGGAATCGAGGATTTTGCTAAATG-CATTGGTTTTGCGTT-----ACGTCACGTCGAAAAGCTGTAAAATTATTGAATACACATAC-CTGCA
gi|111172 : TCAATGTTTCCATATGGC-----CGGTAGTTTCCAATGATCCTTACCAAAAT-TGAGAATAA----------C---TG--GGTTACAAATTGAGAGCA----------A----------AC-----CA-----CC-AAATGATAAT---CTTTGTGATCTTACTCCGGTGTTGCGG-CGGGAATCGAGGAATTTGCGAAATGAAATTGGTTTTGCGT
gi|111173 : GCTG-CGGGGATCGAGGAATTTGCCTAATG-CAATGGTTTTGCGTTACGTTACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTACA
Alignments
lowQualScore : 2 333333333333 3333333333 11 22222 22222 222 11111 1111111111 444444444444444444444444444444444444
lowQualScore : 1 555555555555 1 0000000000 88888 3 22 2 2 33 33 2 2 2 6666 1 66666 44 44444 2 2 2 2 66666 111 1 66666 777777 2 11111 1 2 0 0 4 2 0000000000 444 33 666666666666666666666666666666666666 0 555 0 0 222 2 77777 44 3
lowQualScore : . ............ . .......... ..... . .. . . .. .. . . . .... . ..... .. ..... . . . . ..... ... . ..... ...... . ..... . . . . . . .......... ... .. .................................... . ... . . ... . ..... .. .
lowQualScore : 6 888888888888 1 5555555555 66666 1 99 2 4 22 22 4 5 4 6666 4 99999 66 44444 5 7 0 7 22222 999 9 88888 777777 1 88888 8 5 4 1 6 5 9999999999 444 44 444444444444444444444444444444444444 4 444 7 7 999 9 77777 66 3
consensus : ACAGTCTGCAGCGACCTGGTAAACGGTAAACCC-G-AGAGACGAAGACCGGAACCGACCGTTACATCACGTTGACG----CACTTACGTCAGCGTCTGTTGCCA--GCTAC-CTTCGCTGCT-GG--GCGGCAT--GGCGTCTC-AGCACA-GACTATTCGT--T-ACCGTTTGCGTCGTAACTCCCAACCAATCAGAGC-GCG-G-GCGCCCATACACTAG-A-CTGGTCAAATAATGACCCGACGTCACCGCGCTGCCACGCTTTTATGNGCGCGAC-GTCATCTGAACTGGA-----GCTAAATGGCAGCCCAG----GTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----CGGNAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATAT----------C---TG--GGTCATA----------AA----------AC-----CA-----CCAAAATGATAAT---CTCTGTGATTTGGCTCAGGCGTTGCNA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
Reference ( family-736 ) : ACAGTCTGCAGCGACCTGGTAAACGGTAAACCC-G-AGAGACGAAGACCGGAACCGACCGTTACATCACGTTGACG----CACTTACGTCAGCGTCTGTTGCCA--GCTAC-CTTCGCTGCT-GG--GCGGCAT--GGCGTCTC-AGCACA-GACTATTCGT--T-ACCGTTTGCGTCGTAACTCCCAACCAATCAGAGC-GCG-G-GCGCCCATACACTAG-A-CTGGTCAAATAATGACCCGACGTCACCGCGCTGCCACGCTTTTATGNGCGCGAC-GTCATCTGAACTGGA-----GCTAAATGGCAGCCCAG----GTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----CGGNAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATAT----------C---TG--GGTCATA----------AA----------AC-----CA-----CCAAAATGATAAT---CTCTGTGATTTGGCTCAGGCGTTGCNA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
gi|111149 : ACAGTC-ACAGCGACCTGGTAAACGGTAAACCT-GTAGAGACAAAGACCGGAACCGA----------ACGTTGACG----TGCTTACGTCAGTGTCTGTTGCCACGGCTAC-CTTCGCTGCT-TG--GCAGCAT--GGCGTTTC-AGTACA-GACTATTCGT--T-ACCGTTTGCGTCGTAACTCCCAACTAATAAGAGT-GCG-AAGCGCCCATACACTAG-AACTGGTCAAATAATGACCTGACGTTACCTCGCTGCCATTATTTTATGTGTGCGAC-GTCATCTGAACTGAA-----GTTAAATGGCAGCCCAT----GTTCACCTTGCAATACTTG------AACCAGGTCAATGTTTTCACATGGCATGGTCGGAAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATAT----------T---TG--GGTCATT----------AA----------AC-----CA-----CCAAAATGATAAT---CTCTATGATTTAGCTTAGGCGTTGCTA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAAACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
gi|111150 : ACAGTC-ACAGCGACCTGGTAAA-GGTAAACCT-GTAGAGACAAAGACCGGAACCGA----------ACATTGACG----GTCTTACGTCAGTGTCTGTTGCCACGGCTAC-CTTCGCTGCT-TG--GCAGCAT--GGCGTTTC-AGTACA-GAATATTCGT--T-ACCGTTTGCGTCGTAACTCCCAACTAATCAGAGT-GCGAG-GCGCCCATACATTAG-AACTGGTCAAATAATGACCCGACGTTACCTCACTGCCATGCTTTTATGTGTGCGAC-GTCATCTGAACTGGA-----GTTAAATGGCAGCCCAT----GTTCACCAGGTAATACTTG------AACCAGGTCAATGTTTTCACATGGCATGGCCGGAAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATAT----------C---TG--GGTCATT----------AA----------AC-----CA-----CCAAAATGATAAT---CTCTGTGATTTAGTTTAGGCGTTGCTA-CGGAGACCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAAACGCCGTAAACTTATTGAAT--ACCTAC-CTGCA
gi|111151 : ACAGTC-GCAGCGACCTCGTAAACGGTAAACCT-GGAGAGACAAAGACCGGAACCGA----------ACGTTGACG----TACTTACGTCGGTGTCTGTTGTTA--GTTAC-CTTCGCTGCT-GG--GCAGCAT--GGCGTTTC-AGTACA-GACTATCTGT--T-ACCGTTTGCGACGTAACTCCCAACTAATCAGAGTAGCGCG-GCGCCCATACACTAG-AACTGGTCAAATAATGACCCGACGTTACCTTGCTGCCATGCTTGTATGTGTGCAAC-GTCATCTGAACTGGA-----GCTAAATGGCAGCCCAT----GTTCACCAGGCA-TACTTG------ACCCAGCTGAATGTTTTCACATGGC-----CGGAAGTTTCTCTTGATCCTTGCAAAAAAATAAGAATAT----------C---TG--GGTCATA----------AA----------A------------------ATGATAAT---CTCTGTGATTTGGCTCAGGCGTTGCTA-CGGTGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
gi|111152 : ACAGTC-GCAGCTACCTCGTAAACGGTAAACCT-GGAGAGACAAAGACTGGAACCAAC-----------GTTGACA----TACTTACGTTAGTGTCTGTTGCCA--GCTTC-CTTCGCTGCT-GG--GCAGCAT--GGCGTTTC-AGTACA-GACTATTCGT--T-ATCGTTTACGTCGTAACTCCCAACTAATCAGAGTAGCGCG-GCGCCCAAACACTAGTA-CTGGTCAAATAATGACCCGACGTCACATCGCTGCCATGTTTTTATGTGTGCAAC-GTCATCTGAACTGGA-----GCTAAATGGCAGCCCAT----GTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----CGGAAGTTTCCCTTGATCCTTGCAAAAAT-TAAGAATAT----------C---TG--GGTCATA--------------------------------------AAAATGATAAT---CTCTGTAATTTGGCTCAGGTGTTGCTA-CGGTGATCGAGTAATATGCAAAATG-CATCGGTTTTGCGTT-----ACGTTACGTCGAGACTCCGTTAAATTATTGAAT--ACATAC-CTGCA
gi|111153 : ACAGTCTGCAGCGACCTGGTAAAC------CTG-G-ATAGACAAAGACCGGAACCGAACGTTACATCACGTTGACG----TACTTACGTCAGCGTCTGTTCCCA--GCTAT-CTTTGCTGCT-GG--GTAGCAT--GGCGTCTC-AG-----------------T-ACCGTTTGCGTCGTAATTCCCAACTTATCAGAGTAGCGTG-GCGCCCATACACTAGTA-CTGGAAAAATAATTACCTGTCGTCACCTTGCTGCCATGCTTTTATGTGTGCTAC-GTCATCTGAAATGAA-----GCTAAATTGAAGCCTAG----GTTCACCAGACAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----TGGAAGCT
gi|111154 : ACAGTC-GCACCGACCTGGTAAAC-------CT-GTAGAGACAAAGACCGGAACCGA----------ACGTTGACG----TGCTTACGTCAGTATCTGTTGCCACGGCTAC-CTTCGCTGCT-GG--GCAGCAC--GGCATTTC-AGTACA-GAATATTCGT--T-ACCGTTAACGTCGTAACTCCCAAC
gi|111155 : CAGCGACCTCGTAAACGGTAAACCT-GGAGAGACAAAGACCGGGACCGA----------ATGTTGACG----TACTTACGTCAGTGTCTGTTGCCA--GCTAC-CTTCGCTGCT-GG--ACAGCAT--GACGTTTC-AGTACA-GACTATTCGT--T-ACCGTt
gi|111156 : actgtccACAGTTTGCAGCGACCTGGTAAAC------CCC-G-AGAGACGAACACCGGAGCCGACAAT-ACATCACAT-----------CTTACGTCAGCGT----TGCCA--GCCAC-CTTCACATCT-GT--GCGGCAT--GATGTATC-GGCACA-GACTATTCCT--A-ATCGTTTGCGTCGTAACTCACAACCAATCAGAG
gi|111157 : ACAGTCTGCAGCGACCTGGTAAACGG------C-G--GAGACAAAGACCGGAACCGAACGTTACATCACTTTGACG----TACTTACGTCAGCGTCTGTTGCCA--GTTAC-CT
gi|111158 : CAGCGACCTGGTAAAC------CCA-A-AGAGAC-AAGAACGGATTCGACCATTATACCACGTTTACA----CTCTTACGTCAGCGTCGGTTGCCA--GACAC-CTTCACTGCTTGG--GCGGCAT--GGTGTCTC-TGCACT-GACTATTCGT--T-ATCGTTTGCGTC-------CCGACCAATGA-AGC-ACG-G--CGCCTATACACT-------GGTCAAATGATAACCCAGCGTCATTGTGCTGCCACGATTTTATGGGCACGAC-GTCACCTGAACTTGA-----G---AATGGCAGACCAG----GTTCACATGGCAATATTTG------GCACATATCAATGTTTTCACATGTG-----CGATAGTT-------ATC------AAAAT-TAAGAATAA----------C---TT--GGCCATAAAGCGAGAGCAA----------AC-----AA-----CCAAAATAATAAT---CATTGTGATTTGACTAAGGCGTTGCAG-CGGGAATTCAGGTATTTGCTAAATG-CGTTGGTTTTGCGTA-----ACGTAACGTCGAAACGCCGTTTAGTTATTGAAT--ATATAC-CTGCA
gi|111159 : CAGCGACTTGGT-----GTA--CCC-G-AGAGACGAAGACCAGAACCGACCATAACACCACGTTGAC------ACTTACGTCGGCGTCGGTTGCCA--GCTAC-CTTCACTGCT-GG--GTGGCAT--GGTGTCTC-AGCACA-GACTATTCGT--C-ATCGTTTGCGTCGTATCTTCAAACCAAACAAAGC-AT--G-GCGC-----CAATAG-A-TTGGGCAAATAATAAACCGACGTCCTTGCGCCGCAAC----------GTGCGAC-GTCATCTGAACTGGA-----G---AATGGCAGTCCTG----GTTGACCTGGCAATACTTA------ATACAGATCAATGTTTTCACACGGC-----CAGTAG-TTCCCCTGATCCTTACCAAAAT-TGAGAATAT----------CACATGATGGTCACA----------
gi|111160 : CAGCGACCTGGTAGGC------CTC-G-TGTAACGACGGCTAGAGCCGATCGTTTCATTACGTTGACG----CACTTACGTCAACGTCAATCGGCA--GCCAC-AGTCACTGCT-AT--GCAATAC--GGTGTCTC-AGGGCA-GACCATTCGC--A-ACCGGTTGCGTCGTAACGTCCAACCAATCAGGGC-AC--G-CCGCCCGTAC------A-CTGGTCAGATAATGACCCAACGTCACCGTGATGCCAGGCTGTTATGGGCGCGAC-ATCATCTGATTTGGAGAAGGGTTGACTGG-AACCAAGTTTTGTTCACC
gi|111161 : CAGCGACCTGGTAAAC------CCC-G-AGAGACGAAGACCGGAACCGACTATTACACCACGTAGGCG----CACTTACGTCAGCGTCGGTTGCCA--GCCAT-CTTCACAGCT-TG--ACGGCAT--GGTGTCTC-GGCACA-GACTA-TCGT--A-ATAATTTGTGTCGCAACTCCCAACGAACCAGAGC-
gi|111162 : AGAGACCTGGTGAAC----AAC---G-AGAAACGATGACCGGAACCGACCATTACATCACCTTGACGGGCGCACTTACGTCGGCGTCGGTTGCCA--GCCAA-ATTCACTGCT-GG--GAGGCAT--GGTGTCTC-AGCACA-AACTACTGGT--A-ATCGTTTG------------CAATCAATCAGAAC--CC-G-GCGCCTATTCACTA-------GTCAAATAATGAACCGACGTCATCGCGCTGTCAGGC-TTTATCGACGCGATGGTCATCTGAACCGGA-----G---AATGGCAGACCAG----GTTCACCAGGCAATACTTa
gi|111163 : GGTAAACCCTG-AGAGATGAAGACCAGAATTGACCATTACATTACATTGACG----GACTTACGTCAGTG------GCCA--GCCAC-CTTCACTGCT-GG--GCGCTAT--GGTGTCTC-GACACAAGACTATTCAT--A-ATCGTTTATGTCA-------CAACCAATCAGAGC-A------------------------TGGTCAAATAATGACCCGACGTCACTGCGCTACCACGTTTTTATGGGCGCGAT-GTCATCTGAACTGAA-----G---AATGGCAGACCAG----ATTCACTGGGCA----------------CAGATCAATGTTTTCACATGGC-----CGGTAGTTGCCCATGACCTTTACCAAAAT-TGAGATTAT----------C---TG--CATTATA----------AA----------
gi|111164 : -AGAGACGATGACCGGAACCGACCATTACATCACGTTGACG----CACTTACGTCAGCGTCGGTTGCCA--CCCAC-CTTCACTGCT-GG--GAGGCAT--AGTGTCTC-GGCACA-G-----TCGTGATAATCGTTTGCGTAGTAAATTCCCACAAATCAGAGC-AC--G-GC--------------A-CTGGTCAAATAATGACC---CGTCACCGCACTGCCATGCTTTTATGGGCGCGAC-GTCATCTGGACTGGA-----G---AATGGCAGACCAG----GTTCGCCGGGCAGTACTTG------GCACAGATCAATGTTTTCAGATTGC-----CGGTAGTTTTCCCTGCTTCTTAC-CAAAT-TGAGAATAT----------C---TG--GGTCATA----------AA----------GCGA---GA-----GCAAAA-----------TCTTTGA--------AG----------CGAGAATCTTGGAATGTGCCAAATG-CATTGGTTTTGCGTT-----ATGTTACGTCGAGGTGCCGTCAAATTATTG
gi|111165 : GCCATGGCTAC-CTTCGCTGCT-GGCTG-GGCAT--CATGCCTAGAGTACG-GACTATTCGT--T-ACCGTTTGCGTCGTAACTCCCAACTAATCACAGT-GCACG-GCGCCCATACACTAG-AACTGGTCAAATAATGATCCGACATCACCTCGCTGCCATGCTTTTATGTGTGCGAC-GTCATCT----------------AAATGGCAGCCCAT----GTTCACCAGGCAATACTTG------AACCAGGTCAATGTTTTCACATGGC-----CGGAAGTTTCCATTGATCCTTGCAAAAAT-TGAGAACAT----------C---TA--GGTCATA----------AA----------AC-----CA-----CCAAAATGATAAT---CTCTGTGATTAAGTTTAGGCGTTGCTA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAGACGCCGGAAAATTATTGAAT--ACATAC-CTGCA
gi|111166 : TACTCTTCACAGCT-GG--GTG-CATTTGGTGTCTC-AGGACA-GACTACCGGT--A-ATCATTTGCGTGGTAACTC----------AGAGC-ACG-G--CGCCCATACACC-------GGTCAAATAATGACCCGACGTCACCGGGCTTCCACGCTTTAATGGGCGATAT-GTCATTTTAACAAGA-----G---AATGGCAGATCAG----GTTCACCAGGCAATACATG------GTACAGATCAATGTTCTCACATGGC------------------TGATCCTTACCAAAAT-TGATATTGT----------T---TA--GGTCATA----------AAGCGAGAGCGAAC-----CA-----CCAAAATGATAAT---CTTTCTGATTTGACTCAGGCGTTGCAG-CGAGAATCGGGGAA------------------TTTTGCGTA-----ATGTTACGTCGAGGCGCAGTACAATTATTGAAT--ACATAC-CTGTA
gi|111167 : TAATGACCCGACGTCACATCGCTGCCATGTTTTTATGTGTGCGAC-GTCATCTGAACTGGA-----GCTAAATGGCAGCCCAT----GTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTCTCACATGGC-----CGGAAGTTTCCCTTGGTCCTTGCAAAAGT-TAAGAATAT----------C---TG--GGTCATA----------AA----------A
gi|111168 : C-GTCATCTGAACAAGA-----G---AATGACAG-------------ATCA-----TACTTA------GCATAGATCAATGTTTTCGCATGAC-----CGGTAGTTTCCCCTGATCCATACCAATAT-TAAGAATTT----------C---TG--GGTCGTA----------AAGAGAGGGCAGAC-----CA-----CC-AAATGGTTCT---CTTTTTGATTTGATTAATGCGTTGCAACCGGGAATCGATGAATTTGCCAAATG-CATTGGTTTTACATT-----ACG--ATGT------GCCGTAGAATTATTGAAT--ACATAC-CTGCA
gi|111169 : TCGGAACTGGA-----GCTAAATGGCAGCCCAT----GTTCACAAGGCAATACTTG------AACCAGGTCAATGTTTTCACATGGC-----CGGAAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATAC----------C---TG--GGTCATA----------AA----------AC-----CA-----CCAAAATGATAAT---CTCTTTTATTTAGCTTAGGCGTTGCTA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGGGTT-----ACGTTACGTGGAGACGCCGTAAAATTATTAAAA--ACACACACTG
gi|111170 : CCAG----GGTCACCACTCAATTCTTGCAGCAAAACAATGTCAACGTCATGCCATGGC-----CCGCGGTTTCCCCGGATC-TCACATA----TGAGCACATATGGGATCAGC---TG--GGCCGCA----------AAGCACGAGCTAAC-----CA-----TCAGATTGACAAT---GTTCGCGATCTTACACGGGCGTTACAA-CAGGAATGGAGGAATTTGCCCAACG-CACTGGTATTGCGTT-----ACGTTACGTCGATGCGGCATAAGATCATTGCTT--GCATTC-ATGCA
gi|111171 : AGATCAAAGTGTTCACATGGC-----TGGTAGTTT------ATC------AAAAT-TGAGAATAT----------C---TG--TGTCATA----------AA----------GCGAGAGCAATGAACAAAAATGATGATTATCTTTGTGATTTGACTCAGGCGTTTCAG-CGGGAATCGAGGATTTTGCTAAATG-CATTGGTTTTGCGTT-----ACGTCACGTCGAAAAGCTGTAAAATTATTGAATACACATAC-CTGCA
gi|111172 : TCAATGTTTCCATATGGC-----CGGTAGTTTCCAATGATCCTTACCAAAAT-TGAGAATAA----------C---TG--GGTTACAAATTGAGAGCAA----------AC-----CA-----CC-AAATGATAAT---CTTTGTGATCTTACTCCGGTGTTGCGG-CGGGAATCGAGGAATTTGCGAAATGAAATTGGTTTTGCGT
gi|111173 : GCTG-CGGGGATCGAGGAATTTGCCTAATG-CAATGGTTTTGCGTTACGTTACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTACA
Alignments
lowQualScore : 2 333333333333 3333333333 11 22222 22222 222 11111 1111111111 444444444444444444444444444444444444
lowQualScore : 1 555555555555 1 0000000000 88888 3 22 2 2 33 33 2 2 2 6666 1 66666 44 44444 2 2 2 2 66666 111 1 66666 777777 2 11111 1 2 0 0 4 2 0000000000 444 33 666666666666666666666666666666666666 0 555 0 0 222 2 77777 44 3
lowQualScore : . ............ . .......... ..... . .. . . .. .. . . . .... . ..... .. ..... . . . . ..... ... . ..... ...... . ..... . . . . . . .......... ... .. .................................... . ... . . ... . ..... .. .
lowQualScore : 6 888888888888 1 5555555555 66666 1 99 2 4 22 22 4 5 4 6666 4 99999 66 44444 5 7 0 7 22222 999 9 88888 777777 1 88888 8 5 4 1 6 5 9999999999 444 44 444444444444444444444444444444444444 4 444 7 7 999 9 77777 66 3
consensus : ACAGTCTGCAGCGACCTGGTAAACGGTAAACCC-G-AGAGACGAAGACCGGAACCGACCGTTACATCACGTTGACG----CACTTACGTCAGCGTCTGTTGCCA--GCTAC-CTTCGCTGCT-GG--GCGGCAT--GGCGTCTC-AGCACA-GACTATTCGT--T-ACCGTTTGCGTCGTAACTCCCAACCAATCAGAGC-GCG-G-GCGCCCATACACTAG-A-CTGGTCAAATAATGACCCGACGTCACCGCGCTGCCACGCTTTTATGNGCGCGAC-GTCATCTGAACTGGA-----GCTAAATGGCAGCCCAG----GTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----CGGNAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATAT----------C---TG--GGTCATA----------AA----------AC-----CA-----CCAAAATGATAAT---CTCTGTGATTTGGCTCAGGCGTTGCNA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
Reference ( family-736 ) : ACAGTCTGCAGCGACCTGGTAAACGGTAAACCC-G-AGAGACGAAGACCGGAACCGACCGTTACATCACGTTGACG----CACTTACGTCAGCGTCTGTTGCCA--GCTAC-CTTCGCTGCT-GG--GCGGCAT--GGCGTCTC-AGCACA-GACTATTCGT--T-ACCGTTTGCGTCGTAACTCCCAACCAATCAGAGC-GCG-G-GCGCCCATACACTAG-A-CTGGTCAAATAATGACCCGACGTCACCGCGCTGCCACGCTTTTATGNGCGCGAC-GTCATCTGAACTGGA-----GCTAAATGGCAGCCCAG----GTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----CGGNAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATAT----------C---TG--GGTCATA----------AA----------AC-----CA-----CCAAAATGATAAT---CTCTGTGATTTGGCTCAGGCGTTGCNA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
gi|111149 : ACAGTC-ACAGCGACCTGGTAAACGGTAAACCT-GTAGAGACAAAGACCGGAACCGA----------ACGTTGACG----TGCTTACGTCAGTGTCTGTTGCCACGGCTAC-CTTCGCTGCT-TG--GCAGCAT--GGCGTTTC-AGTACA-GACTATTCGT--T-ACCGTTTGCGTCGTAACTCCCAACTAATAAGAGT-GCG-AAGCGCCCATACACTAG-AACTGGTCAAATAATGACCTGACGTTACCTCGCTGCCATTATTTTATGTGTGCGAC-GTCATCTGAACTGAA-----GTTAAATGGCAGCCCAT----GTTCACCTTGCAATACTTG------AACCAGGTCAATGTTTTCACATGGCATGGTCGGAAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATAT----------T---TG--GGTCATT----------AA----------AC-----CA-----CCAAAATGATAAT---CTCTATGATTTAGCTTAGGCGTTGCTA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAAACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
gi|111150 : ACAGTC-ACAGCGACCTGGTAAA-GGTAAACCT-GTAGAGACAAAGACCGGAACCGA----------ACATTGACG----GTCTTACGTCAGTGTCTGTTGCCACGGCTAC-CTTCGCTGCT-TG--GCAGCAT--GGCGTTTC-AGTACA-GAATATTCGT--T-ACCGTTTGCGTCGTAACTCCCAACTAATCAGAGT-GCGAG-GCGCCCATACATTAG-AACTGGTCAAATAATGACCCGACGTTACCTCACTGCCATGCTTTTATGTGTGCGAC-GTCATCTGAACTGGA-----GTTAAATGGCAGCCCAT----GTTCACCAGGTAATACTTG------AACCAGGTCAATGTTTTCACATGGCATGGCCGGAAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATAT----------C---TG--GGTCATT----------AA----------AC-----CA-----CCAAAATGATAAT---CTCTGTGATTTAGTTTAGGCGTTGCTA-CGGAGACCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAAACGCCGTAAACTTATTGAAT--ACCTAC-CTGCA
gi|111151 : ACAGTC-GCAGCGACCTCGTAAACGGTAAACCT-GGAGAGACAAAGACCGGAACCGA----------ACGTTGACG----TACTTACGTCGGTGTCTGTTGTTA--GTTAC-CTTCGCTGCT-GG--GCAGCAT--GGCGTTTC-AGTACA-GACTATCTGT--T-ACCGTTTGCGACGTAACTCCCAACTAATCAGAGTAGCGCG-GCGCCCATACACTAG-AACTGGTCAAATAATGACCCGACGTTACCTTGCTGCCATGCTTGTATGTGTGCAAC-GTCATCTGAACTGGA-----GCTAAATGGCAGCCCAT----GTTCACCAGGCA-TACTTG------ACCCAGCTGAATGTTTTCACATGGC-----CGGAAGTTTCTCTTGATCCTTGCAAAAAAATAAGAATAT----------C---TG--GGTCATA----------AA----------A------------------ATGATAAT---CTCTGTGATTTGGCTCAGGCGTTGCTA-CGGTGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
gi|111152 : ACAGTC-GCAGCTACCTCGTAAACGGTAAACCT-GGAGAGACAAAGACTGGAACCAAC-----------GTTGACA----TACTTACGTTAGTGTCTGTTGCCA--GCTTC-CTTCGCTGCT-GG--GCAGCAT--GGCGTTTC-AGTACA-GACTATTCGT--T-ATCGTTTACGTCGTAACTCCCAACTAATCAGAGTAGCGCG-GCGCCCAAACACTAGTA-CTGGTCAAATAATGACCCGACGTCACATCGCTGCCATGTTTTTATGTGTGCAAC-GTCATCTGAACTGGA-----GCTAAATGGCAGCCCAT----GTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----CGGAAGTTTCCCTTGATCCTTGCAAAAAT-TAAGAATAT----------C---TG--GGTCATA--------------------------------------AAAATGATAAT---CTCTGTAATTTGGCTCAGGTGTTGCTA-CGGTGATCGAGTAATATGCAAAATG-CATCGGTTTTGCGTT-----ACGTTACGTCGAGACTCCGTTAAATTATTGAAT--ACATAC-CTGCA
gi|111153 : ACAGTCTGCAGCGACCTGGTAAAC------CTG-G-ATAGACAAAGACCGGAACCGAACGTTACATCACGTTGACG----TACTTACGTCAGCGTCTGTTCCCA--GCTAT-CTTTGCTGCT-GG--GTAGCAT--GGCGTCTC-AG-----------------T-ACCGTTTGCGTCGTAATTCCCAACTTATCAGAGTAGCGTG-GCGCCCATACACTAGTA-CTGGAAAAATAATTACCTGTCGTCACCTTGCTGCCATGCTTTTATGTGTGCTAC-GTCATCTGAAATGAA-----GCTAAATTGAAGCCTAG----GTTCACCAGACAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----TGGAAGCT
gi|111154 : ACAGTC-GCACCGACCTGGTAAAC-------CT-GTAGAGACAAAGACCGGAACCGA----------ACGTTGACG----TGCTTACGTCAGTATCTGTTGCCACGGCTAC-CTTCGCTGCT-GG--GCAGCAC--GGCATTTC-AGTACA-GAATATTCGT--T-ACCGTTAACGTCGTAACTCCCAAC
gi|111155 : CAGCGACCTCGTAAACGGTAAACCT-GGAGAGACAAAGACCGGGACCGA----------ATGTTGACG----TACTTACGTCAGTGTCTGTTGCCA--GCTAC-CTTCGCTGCT-GG--ACAGCAT--GACGTTTC-AGTACA-GACTATTCGT--T-ACCGTt
gi|111156 : actgtccACAGTTTGCAGCGACCTGGTAAAC------CCC-G-AGAGACGAACACCGGAGCCGACAAT-ACATCACAT-----------CTTACGTCAGCGT----TGCCA--GCCAC-CTTCACATCT-GT--GCGGCAT--GATGTATC-GGCACA-GACTATTCCT--A-ATCGTTTGCGTCGTAACTCACAACCAATCAGAG
gi|111157 : ACAGTCTGCAGCGACCTGGTAAACGG------C-G--GAGACAAAGACCGGAACCGAACGTTACATCACTTTGACG----TACTTACGTCAGCGTCTGTTGCCA--GTTAC-CT
gi|111158 : CAGCGACCTGGTAAAC------CCA-A-AGAGAC-AAGAACGGATTCGACCATTATACCACGTTTACA----CTCTTACGTCAGCGTCGGTTGCCA--GACAC-CTTCACTGCTTGG--GCGGCAT--GGTGTCTC-TGCACT-GACTATTCGT--T-ATCGTTTGCGTC-------CCGACCAATGA-AGC-ACG-G--CGCCTATACACT-------GGTCAAATGATAACCCAGCGTCATTGTGCTGCCACGATTTTATGGGCACGAC-GTCACCTGAACTTGA-----G---AATGGCAGACCAG----GTTCACATGGCAATATTTG------GCACATATCAATGTTTTCACATGTG-----CGATAGTT-------ATC------AAAAT-TAAGAATAA----------C---TT--GGCCATAAAGCGAGAGCAA----------AC-----AA-----CCAAAATAATAAT---CATTGTGATTTGACTAAGGCGTTGCAG-CGGGAATTCAGGTATTTGCTAAATG-CGTTGGTTTTGCGTA-----ACGTAACGTCGAAACGCCGTTTAGTTATTGAAT--ATATAC-CTGCA
gi|111159 : CAGCGACTTGGT-----GTA--CCC-G-AGAGACGAAGACCAGAACCGACCATAACACCACGTTGAC------ACTTACGTCGGCGTCGGTTGCCA--GCTAC-CTTCACTGCT-GG--GTGGCAT--GGTGTCTC-AGCACA-GACTATTCGT--C-ATCGTTTGCGTCGTATCTTCAAACCAAACAAAGC-AT--G-GCGC-----CAATAG-A-TTGGGCAAATAATAAACCGACGTCCTTGCGCCGCAAC----------GTGCGAC-GTCATCTGAACTGGA-----G---AATGGCAGTCCTG----GTTGACCTGGCAATACTTA------ATACAGATCAATGTTTTCACACGGC-----CAGTAG-TTCCCCTGATCCTTACCAAAAT-TGAGAATAT----------CACATGATGGTCACA----------
gi|111160 : CAGCGACCTGGTAGGC------CTC-G-TGTAACGACGGCTAGAGCCGATCGTTTCATTACGTTGACG----CACTTACGTCAACGTCAATCGGCA--GCCAC-AGTCACTGCT-AT--GCAATAC--GGTGTCTC-AGGGCA-GACCATTCGC--A-ACCGGTTGCGTCGTAACGTCCAACCAATCAGGGC-AC--G-CCGCCCGTAC------A-CTGGTCAGATAATGACCCAACGTCACCGTGATGCCAGGCTGTTATGGGCGCGAC-ATCATCTGATTTGGAGAAGGGTTGACTGG-AACCAAGTTTTGTTCACC
gi|111161 : CAGCGACCTGGTAAAC------CCC-G-AGAGACGAAGACCGGAACCGACTATTACACCACGTAGGCG----CACTTACGTCAGCGTCGGTTGCCA--GCCAT-CTTCACAGCT-TG--ACGGCAT--GGTGTCTC-GGCACA-GACTA-TCGT--A-ATAATTTGTGTCGCAACTCCCAACGAACCAGAGC-
gi|111162 : AGAGACCTGGTGAAC----AAC---G-AGAAACGATGACCGGAACCGACCATTACATCACCTTGACGGGCGCACTTACGTCGGCGTCGGTTGCCA--GCCAA-ATTCACTGCT-GG--GAGGCAT--GGTGTCTC-AGCACA-AACTACTGGT--A-ATCGTTTG------------CAATCAATCAGAAC--CC-G-GCGCCTATTCACTA-------GTCAAATAATGAACCGACGTCATCGCGCTGTCAGGC-TTTATCGACGCGATGGTCATCTGAACCGGA-----G---AATGGCAGACCAG----GTTCACCAGGCAATACTTa
gi|111163 : GGTAAACCCTG-AGAGATGAAGACCAGAATTGACCATTACATTACATTGACG----GACTTACGTCAGTG------GCCA--GCCAC-CTTCACTGCT-GG--GCGCTAT--GGTGTCTC-GACACAAGACTATTCAT--A-ATCGTTTATGTCA-------CAACCAATCAGAGC-A------------------------TGGTCAAATAATGACCCGACGTCACTGCGCTACCACGTTTTTATGGGCGCGAT-GTCATCTGAACTGAA-----G---AATGGCAGACCAG----ATTCACTGGGCA----------------CAGATCAATGTTTTCACATGGC-----CGGTAGTTGCCCATGACCTTTACCAAAAT-TGAGATTAT----------C---TG--CATTATA----------AA----------
gi|111164 : -AGAGACGATGACCGGAACCGACCATTACATCACGTTGACG----CACTTACGTCAGCGTCGGTTGCCA--CCCAC-CTTCACTGCT-GG--GAGGCAT--AGTGTCTC-GGCACA-G-----TCGTGATAATCGTTTGCGTAGTAAATTCCCACAAATCAGAGC-AC--G-GC--------------A-CTGGTCAAATAATGACC---CGTCACCGCACTGCCATGCTTTTATGGGCGCGAC-GTCATCTGGACTGGA-----G---AATGGCAGACCAG----GTTCGCCGGGCAGTACTTG------GCACAGATCAATGTTTTCAGATTGC-----CGGTAGTTTTCCCTGCTTCTTAC-CAAAT-TGAGAATAT----------C---TG--GGTCATA----------AA----------GCGA---GA-----GCAAAA-----------TCTTTGA--------AG----------CGAGAATCTTGGAATGTGCCAAATG-CATTGGTTTTGCGTT-----ATGTTACGTCGAGGTGCCGTCAAATTATTG
gi|111165 : GCCATGGCTAC-CTTCGCTGCT-GGCTG-GGCAT--CATGCCTAGAGTACG-GACTATTCGT--T-ACCGTTTGCGTCGTAACTCCCAACTAATCACAGT-GCACG-GCGCCCATACACTAG-AACTGGTCAAATAATGATCCGACATCACCTCGCTGCCATGCTTTTATGTGTGCGAC-GTCATCT----------------AAATGGCAGCCCAT----GTTCACCAGGCAATACTTG------AACCAGGTCAATGTTTTCACATGGC-----CGGAAGTTTCCATTGATCCTTGCAAAAAT-TGAGAACAT----------C---TA--GGTCATA----------AA----------AC-----CA-----CCAAAATGATAAT---CTCTGTGATTAAGTTTAGGCGTTGCTA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAGACGCCGGAAAATTATTGAAT--ACATAC-CTGCA
gi|111166 : TACTCTTCACAGCT-GG--GTG-CATTTGGTGTCTC-AGGACA-GACTACCGGT--A-ATCATTTGCGTGGTAACTC----------AGAGC-ACG-G--CGCCCATACACC-------GGTCAAATAATGACCCGACGTCACCGGGCTTCCACGCTTTAATGGGCGATAT-GTCATTTTAACAAGA-----G---AATGGCAGATCAG----GTTCACCAGGCAATACATG------GTACAGATCAATGTTCTCACATGGC------------------TGATCCTTACCAAAAT-TGATATTGT----------T---TA--GGTCATA----------AAGCGAGAGCGAAC-----CA-----CCAAAATGATAAT---CTTTCTGATTTGACTCAGGCGTTGCAG-CGAGAATCGGGGAA------------------TTTTGCGTA-----ATGTTACGTCGAGGCGCAGTACAATTATTGAAT--ACATAC-CTGTA
gi|111167 : TAATGACCCGACGTCACATCGCTGCCATGTTTTTATGTGTGCGAC-GTCATCTGAACTGGA-----GCTAAATGGCAGCCCAT----GTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTCTCACATGGC-----CGGAAGTTTCCCTTGGTCCTTGCAAAAGT-TAAGAATAT----------C---TG--GGTCATA----------AA----------A
gi|111168 : C-GTCATCTGAACAAGA-----G---AATGACAG-------------ATCA-----TACTTA------GCATAGATCAATGTTTTCGCATGAC-----CGGTAGTTTCCCCTGATCCATACCAATAT-TAAGAATTT----------C---TG--GGTCGTA----------AAGAGAGGGCAGAC-----CA-----CC-AAATGGTTCT---CTTTTTGATTTGATTAATGCGTTGCAACCGGGAATCGATGAATTTGCCAAATG-CATTGGTTTTACATT-----ACG--ATGT------GCCGTAGAATTATTGAAT--ACATAC-CTGCA
gi|111169 : TCGGAACTGGA-----GCTAAATGGCAGCCCAT----GTTCACAAGGCAATACTTG------AACCAGGTCAATGTTTTCACATGGC-----CGGAAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATAC----------C---TG--GGTCATA----------AA----------AC-----CA-----CCAAAATGATAAT---CTCTTTTATTTAGCTTAGGCGTTGCTA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGGGTT-----ACGTTACGTGGAGACGCCGTAAAATTATTAAAA--ACACACACTG
gi|111170 : CCAG----GGTCACCACTCAATTCTTGCAGCAAAACAATGTCAACGTCATGCCATGGC-----CCGCGGTTTCCCCGGATC-TCACATA----TGAGCACATATGGGATCAGC---TG--GGCCGCA----------AAGCACGAGCTAAC-----CA-----TCAGATTGACAAT---GTTCGCGATCTTACACGGGCGTTACAA-CAGGAATGGAGGAATTTGCCCAACG-CACTGGTATTGCGTT-----ACGTTACGTCGATGCGGCATAAGATCATTGCTT--GCATTC-ATGCA
gi|111171 : AGATCAAAGTGTTCACATGGC-----TGGTAGTTT------ATC------AAAAT-TGAGAATAT----------C---TG--TGTCATA----------AA----------GCGAGAGCAATGAACAAAAATGATGATTATCTTTGTGATTTGACTCAGGCGTTTCAG-CGGGAATCGAGGATTTTGCTAAATG-CATTGGTTTTGCGTT-----ACGTCACGTCGAAAAGCTGTAAAATTATTGAATACACATAC-CTGCA
gi|111172 : TCAATGTTTCCATATGGC-----CGGTAGTTTCCAATGATCCTTACCAAAAT-TGAGAATAA----------C---TG--GGTTACAAATTGAGAGCAA----------AC-----CA-----CC-AAATGATAAT---CTTTGTGATCTTACTCCGGTGTTGCGG-CGGGAATCGAGGAATTTGCGAAATGAAATTGGTTTTGCGT
gi|111173 : GCTG-CGGGGATCGAGGAATTTGCCTAATG-CAATGGTTTTGCGTTACGTTACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTACA
blockSeqs : T GGTAAACCTGT A ACGTTACATC GGCGC T CG T T CT TT G T A GATA T AGCGC G AGAA T T T G GAAGG TTA C GTTTT CAGCAA A ATGGC A T A A ATGGGATCAG ACA AT AAGCGAGAGCAAACAA TAT AAC A ACGTT AC A
blockSeqs : T GGTAAACCTGG A ACGTTACATC G T CG . . . . . T . T T AGCGC G AGAA T T T . . CTA C T . C . A T A . . . . AAGCGAGAGCGAACCA . TA . . . .
blockSeqs : T GGTAAACCTGG A CCATTATACC T T TG . . . . . T . T T AGCGT G AGTA T T T . . CTA C T . C . A T A . . . . AAGAGAGGGCAGACCA . TA . . . .
blockSeqs : . GGTAAACCTGG A CCATAACACC T T . . . . . . T . T T GCGA G AGTA T T T . . CTA C T . C . A C C . . . . AAGCACGAGCTAACCA . TA . . . .
blockSeqs : . GGTAAACCCTG A TCGTTTCATT T T . . . . . . T . T C GCAC G AGAA G C G . . TTG A G . C . T A C . . . . AAGCGAGAGCAATGAA . AG . . . .
blockSeqs : . GTACCCG A CTATTACACC T T . . . . . . C . T C ACG C AGA G C G . . CTA T G . T . T C A . . . . AATTGAGAGCAAACCA . TA . . . .
blockSeqs : . CTGG G CCATTACATC T T . . . . . . C . T C ACG G A G G G . . CTA C G . C . T T C . . . . AAGCGAGA . AG . . . .
blockSeqs : CTGT A CCATTACATT T G . . . . . . C . A C AT G A G G G . . A A G . A . T T A . . . . AAACCA . TA . . . .
blockSeqs : CCCG G CCATTACATC C G . . . . . . G . T G AC G A G C G . . . A G . T . A C C . . . . AAACCA . AA . . . .
blockSeqs : GGCG G CAATACATC C A . . . . . . C . C C CC . . G T T . . . A G . C . A T A . . . . AAACCA . AG . . . .
blockSeqs : CCAA G C C G . . . . . . C . A C AC . . T T G . . . C T . C . T C A . . . . AAA . GG . . . .
blockSeqs : CTCG G . G G . . . . . . C . A A A . . G C T . . . A G . A . A A C . . . . . . TG . .
blockSeqs : CCCG G . C G . . . . . . C . A T T T . . . . C T . A . C . . . . . . . .
blockSeqs : AACG G . . . . . . . . . T . A . . . . C T . . . T . . . . . .
blockSeqs : . . . . . . . . . . G . T . . . G . T . . . . . .
blockSeqs : . . . . . . . . A . . .
blockSeqs : .
blockSeqCons : CCCG******** CCGTTACATC ** AGCGC G* TA* ***** AAGCGAGAGCAACCA*********************
originalCons : ACAGTCTGCAGCGACCTGGTAAACGGTAAACCC-G-AGAGACGAAGACCGGAACCGACCGTTACATCACGTTGACG----CACTTACGTCAGCGTCTGTTGCCA--GCTAC-CTTCGCTGCT-GG--GCGGCAT--GGCGTCTC-AGCACA-GACTATTCGT--T-ACCGTTTGCGTCGTAACTCCCAACCAATCAGAGC-GCG-G-GCGCCCATACACTAG-A-CTGGTCAAATAATGACCCGACGTCACCGCGCTGCCACGCTTTTATGNGCGCGAC-GTCATCTGAACTGGA-----GCTAAATGGCAGCCCAG----GTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----CGGNAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATAT----------C---TG--GGTCATA----------AA----------AC-----CA-----CCAAAATGATAAT---CTCTGTGATTTGGCTCAGGCGTTGCNA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
finalCons : ACAGTCTGCAGCGACCTGGTAAACCCCG--------AGAGACGAAGACCGGAACCGACCGTTACATCACGTTGACG----CACTTACGTCAGCGTCTGTTGCCA--GCTAC-CTTCGCTGCT-GG--GCGGCAT--GGCGTCTC-AGCACA-GACTATTCGT--T-ACCGTTTGCGTCGTAACTCCCAACCAATCAGAGCAGCGCGG-CGCCCATACACTAG-A-CTGGTCAAATAATGACCCGACGTCACCGCGCTGCCACGCTTTTATGNGCGCGAC-GTCATCTGAACTGGA-----GTA-AATGGCAGCCCAG----GTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----CGGNAGTTTCCCTTGATCCTTGCAAAAAT-TGAGAATAT----------C---TG--GGTCATAAAGCGAGAGCAACCA---------------------CCAAAATGATAAT---CTCTGTGATTTGGCTCAGGCGTTGCNA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
Alignments
lowQualScore : 2 2222222 111111 3333333333 11 1111 22222 444444444 11111 1111111111 44444444444
lowQualScore : 1 6666666 444444 6 5 1 0000000000 88888 3 22 2 2 33 33 2 2 2 444 2 1 7777 44444 2 2 2 2 111111111 1 66666 777777 2 11111 1 2 0 0 77 0000000000 444 33 44444444444 3 6666 0 0 222 2 77777 44 3
lowQualScore : . ....... ...... . . . .......... ..... . .. . . .. .. . . . ... . . .... ..... . . . . ......... . ..... ...... . ..... . . . . .. .......... ... .. ........... . .... . . ... . ..... .. .
lowQualScore : 6 0000000 333333 5 0 1 5555555555 66666 1 99 2 4 22 22 4 5 4 333 4 4 8888 44444 5 7 0 7 111111111 9 88888 777777 1 88888 8 5 4 1 11 9999999999 444 44 88888888888 1 5555 7 7 999 9 77777 66 3
consensus : ACAGTCTGCAGCGACCT-------GGTAAAC------CCCG-AGAGACGAAGACCGGAACCGACCGTTACATCACGTTGACG----CACTTACGTCAGCGTCTGTTGCCA--GCTAC-CTTCGCTGCT-GG--GCGGCAT--GGCGTCTC-AGCACA-GACTATTCGT--TA-CCGTTTGCGTCGTAACTCCCAACCAATCAGAGCAGCGCGGCGCCCATACACTAG-A-CTGGTCAAATAATGACCCGACGTCACCGCGCTGCCACGCTTTTATGNGCGCGAC-GTCATCTGAACTGGAG------T-AAATGGCAGCCCAG----GTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----CGGNAGTTTCCCTTGATCCTTGC-AAAAATTGAGAATAT----------C---TG--GGTCATAAAGCGAGAGC-A-A-CCACCAAAA----TGATAATCTCTGTGATTTGGCTCAGGCGTTGCNA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
Reference ( family-736 ) : ACAGTCTGCAGCGACCT-------GGTAAAC------CCCG-AGAGACGAAGACCGGAACCGACCGTTACATCACGTTGACG----CACTTACGTCAGCGTCTGTTGCCA--GCTAC-CTTCGCTGCT-GG--GCGGCAT--GGCGTCTC-AGCACA-GACTATTCGT--TA-CCGTTTGCGTCGTAACTCCCAACCAATCAGAGCAGCGCGGCGCCCATACACTAG-A-CTGGTCAAATAATGACCCGACGTCACCGCGCTGCCACGCTTTTATGNGCGCGAC-GTCATCTGAACTGGAG------T-AAATGGCAGCCCAG----GTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----CGGNAGTTTCCCTTGATCCTTGC-AAAAATTGAGAATAT----------C---TG--GGTCATAAAGCGAGAGC-A-A-CCACCAAAA----TGATAATCTCTGTGATTTGGCTCAGGCGTTGCNA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
gi|111149 : ACAGTC-ACAGCGACCT-------GGTAAACGGTAAACCTGTAGAGACAAAGACCGGAACCGA----------ACGTTGACG----TGCTTACGTCAGTGTCTGTTGCCACGGCTAC-CTTCGCTGCT-TG--GCAGCAT--GGCGTTTC-AGTACA-GACTATTCGT--TA-CCGTTTGCGTCGTAACTCCCAACTAATAAGAGT-GCGAAGCGCCCATACACTAG-AACTGGTCAAATAATGACCTGACGTTACCTCGCTGCCATTATTTTATGTGTGCGAC-GTCATCTGAACTGAAG------TTAAATGGCAGCCCAT----GTTCACCTTGCAATACTTG------AACCAGGTCAATGTTTTCACATGGCATGGTCGGAAGTTTCCCTTGATCCTTGC-AAAAATTGAGAATAT----------T---TG--GGTCATTAA-----------A-CCACCAAAA----TGATAATCTCTATGATTTAGCTTAGGCGTTGCTA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAAACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
gi|111150 : ACAGTC-ACAGCGACCT-------GGTAAAGGTAAA-CCTGTAGAGACAAAGACCGGAACCGA----------ACATTGACG----GTCTTACGTCAGTGTCTGTTGCCACGGCTAC-CTTCGCTGCT-TG--GCAGCAT--GGCGTTTC-AGTACA-GAATATTCGT--TA-CCGTTTGCGTCGTAACTCCCAACTAATCAGAGT-GCGAGGCGCCCATACATTAG-AACTGGTCAAATAATGACCCGACGTTACCTCACTGCCATGCTTTTATGTGTGCGAC-GTCATCTGAACTGGAG------TTAAATGGCAGCCCAT----GTTCACCAGGTAATACTTG------AACCAGGTCAATGTTTTCACATGGCATGGCCGGAAGTTTCCCTTGATCCTTGC-AAAAATTGAGAATAT----------C---TG--GGTCATTAA-----------A-CCACCAAAA----TGATAATCTCTGTGATTTAGTTTAGGCGTTGCTA-CGGAGACCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAAACGCCGTAAACTTATTGAAT--ACCTAC-CTGCA
gi|111151 : ACAGTC-GCAGCGACCTCGTAAACGGTAAAC------CTGG-AGAGACAAAGACCGGAACCGA----------ACGTTGACG----TACTTACGTCGGTGTCTGTTGTTA--GTTAC-CTTCGCTGCT-GG--GCAGCAT--GGCGTTTC-AGTACA-GACTATCTGT--TA-CCGTTTGCGACGTAACTCCCAACTAATCAGAGTAGCGCGGCGCCCATACACTAGAA-CTGGTCAAATAATGACCCGACGTTACCTTGCTGCCATGCTTGTATGTGTGCAAC-GTCATCTGAACTGGAGC-----T-AAATGGCAGCCCAT----GTTCACCAGGC-ATACTTG------ACCCAGCTGAATGTTTTCACATGGC-----CGGAAGTTTCTCTTGATCCTTGCAAAAAAATAAGAATAT----------C---TG--GGTCATA--------------------AAAA----TGATAATCTCTGTGATTTGGCTCAGGCGTTGCTA-CGGTGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTGCA
gi|111152 : ACAGTC-GCAGCTACCTCGTAAACGGTAAAC------CTGG-AGAGACAAAGACTGGAACCAAC-----------GTTGACA----TACTTACGTTAGTGTCTGTTGCCA--GCTTC-CTTCGCTGCT-GG--GCAGCAT--GGCGTTTC-AGTACA-GACTATTCGT--TA-TCGTTTACGTCGTAACTCCCAACTAATCAGAGTAGCGCGGCGCCCAAACACTAGTA-CTGGTCAAATAATGACCCGACGTCACATCGCTGCCATGTTTTTATGTGTGCAAC-GTCATCTGAACTGGAGC-----T-AAATGGCAGCCCAT----GTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----CGGAAGTTTCCCTTGATCCTTGC-AAAAATTAAGAATAT----------C---TG--GGTCATA--------------------AAAA----TGATAATCTCTGTAATTTGGCTCAGGTGTTGCTA-CGGTGATCGAGTAATATGCAAAATG-CATCGGTTTTGCGTT-----ACGTTACGTCGAGACTCCGTTAAATTATTGAAT--ACATAC-CTGCA
gi|111153 : ACAGTCTGCAGCGACCT-------GGTAAAC------CTGG-ATAGACAAAGACCGGAACCGAACGTTACATCACGTTGACG----TACTTACGTCAGCGTCTGTTCCCA--GCTAT-CTTTGCTGCT-GG--GTAGCAT--GGCGTCTC-AG-----------------TA-CCGTTTGCGTCGTAATTCCCAACTTATCAGAGTAGCGTGGCGCCCATACACTAGTA-CTGGAAAAATAATTACCTGTCGTCACCTTGCTGCCATGCTTTTATGTGTGCTAC-GTCATCTGAAATGAAGC-----T-AAATTGAAGCCTAG----GTTCACCAGACAATACTTG------ACCCAGGTCAATGTTTTCACATGGC-----TGGAAGCT
gi|111154 : ACAGTC-GCACCGACCT-------GGTAAAC------CTGT-AGAGACAAAGACCGGAACCGA----------ACGTTGACG----TGCTTACGTCAGTATCTGTTGCCACGGCTAC-CTTCGCTGCT-GG--GCAGCAC--GGCATTTC-AGTACA-GAATATTCGT--TA-CCGTTAACGTCGTAACTCCCAAC
gi|111155 : CAGCGACCTCGTAAACGGTAAAC------CTGG-AGAGACAAAGACCGGGACCGA----------ATGTTGACG----TACTTACGTCAGTGTCTGTTGCCA--GCTAC-CTTCGCTGCT-GG--ACAGCAT--GACGTTTC-AGTACA-GACTATTCGT--TA-CCGTt
gi|111156 : actgtccACAGTTTGCAGCGACCT-------GGTAAAC------CCCG-AGAGACGAACACCGGAGCCGACAAT-ACATCACAT-----------CTTACGTCAGCGT----TGCCA--GCCAC-CTTCACATCT-GT--GCGGCAT--GATGTATC-GGCACA-GACTATTCCT--AA-TCGTTTGCGTCGTAACTCACAACCAATCAGAG
gi|111157 : ACAGTCTGCAGCGACCT-------GGTAAAC------GGCG--GAGACAAAGACCGGAACCGAACGTTACATCACTTTGACG----TACTTACGTCAGCGTCTGTTGCCA--GTTAC-CT
gi|111158 : CAGCGACCT-------GGTAAAC------CCAA-AGAGAC-AAGAACGGATTCGACCATTATACCACGTTTACA----CTCTTACGTCAGCGTCGGTTGCCA--GACAC-CTTCACTGCTTGG--GCGGCAT--GGTGTCTC-TGCACT-GACTATTCGT--TA-TCGTTTGCGTC-------CCGACCAAT--GA--AGCACGGCGCCTATACACT-------GGTCAAATGATAACCCAGCGTCATTGTGCTGCCACGATTTTATGGGCACGAC-GTCACCTGAACTTGAG---------AATGGCAGACCAG----GTTCACATGGCAATATTTG------GCACATATCAATGTTTTCACATGTG-----CGATAGTT-------ATC-------AAAATTAAGAATAA----------C---TT--GGCCATAAAGCGAGAGCAA-A-CAACCAAAA----TAATAATCATTGTGATTTGACTAAGGCGTTGCAG-CGGGAATTCAGGTATTTGCTAAATG-CGTTGGTTTTGCGTA-----ACGTAACGTCGAAACGCCGTTTAGTTATTGAAT--ATATAC-CTGCA
gi|111159 : CAGCGACTT-------GGTGTAC------CC-G-AGAGACGAAGACCAGAACCGACCATAACACCACGTTGAC------ACTTACGTCGGCGTCGGTTGCCA--GCTAC-CTTCACTGCT-GG--GTGGCAT--GGTGTCTC-AGCACA-GACTATTCGT--CA-TCGTTTGCGTCGTATCTTCAAACCAAACAAAGCA---TGGCGC-----CAATAG-A-TTGGGCAAATAATAAACCGACGTCCTTGCGCCGCAAC----------GTGCGAC-GTCATCTGAACTGGAG---------AATGGCAGTCCTG----GTTGACCTGGCAATACTTA------ATACAGATCAATGTTTTCACACGGC-----CAGTAG-TTCCCCTGATCCTTAC-CAAAATTGAGAATAT----------CACATGATGGTCACA
gi|111160 : CAGCGACCT-------GGTAGGC------CTCG-TGTAACGACGGCTAGAGCCGATCGTTTCATTACGTTGACG----CACTTACGTCAACGTCAATCGGCA--GCCAC-AGTCACTGCT-AT--GCAATAC--GGTGTCTC-AGGGCA-GACCATTCGC--AA-CCGGTTGCGTCGTAACGTCCAACCAATCAGGGCA-CGC--CGCCCGTAC------A-CTGGTCAGATAATGACCCAACGTCACCGTGATGCCAGGCTGTTATGGGCGCGAC-ATCATCTGATTTGGAGAAGGGTT-GACTGG-AACCAAGTTTTGTTCACC
gi|111161 : CAGCGACCT-------GGTAAAC------CCCG-AGAGACGAAGACCGGAACCGACTATTACACCACGTAGGCG----CACTTACGTCAGCGTCGGTTGCCA--GCCAT-CTTCACAGCT-TG--ACGGCAT--GGTGTCTC-GGCACA-GACTA-TCGT--AA-TAATTTGTGTCGCAACTCCCAACGAACCAGAGCA
gi|111162 : AGAGACCT-------GGTGAAC------AACG-AGAAACGATGACCGGAACCGACCATTACATCACCTTGACGGGCGCACTTACGTCGGCGTCGGTTGCCA--GCCAA-ATTCACTGCT-GG--GAGGCAT--GGTGTCTC-AGCACA-AACTACTGGT--AA-TCGTTTG------------CAATCAATCAGAAC--C-CGGCGCCTATTCACTA-------GTCAAATAATGAACCGACGTCATCGCGCTGTCAGGC-TTTATCGACGCGATGGTCATCTGAACCGGAG---------AATGGCAGACCAG----GTTCACCAGGCAATACTT
gi|111163 : -------GGTAAAC------CCTG-AGAGATGAAGACCAGAATTGACCATTACATTACATTGACG----GACTTACGTCAGTG------GCCA--GCCAC-CTTCACTGCT-GG--GCGCTAT--GGTGTCTC-GACACAAGACTATTCAT--AA-TCGTTTATGTCA-------CAACCAATCAGAGCA------------------------TGGTCAAATAATGACCCGACGTCACTGCGCTACCACGTTTTTATGGGCGCGAT-GTCATCTGAACTGAAG---------AATGGCAGACCAG----ATTCACTGGGCA----------------CAGATCAATGTTTTCACATGGC-----CGGTAGTTGCCCATGACCTTTAC-CAAAATTGAGATTAT----------C---TG--CATTATAAA
gi|111164 : -AGAGACGATGACCGGAACCGACCATTACATCACGTTGACG----CACTTACGTCAGCGTCGGTTGCCA--CCCAC-CTTCACTGCT-GG--GAGGCAT--AGTGTCTC-GGCACA-G-----TCGTGATAATCGTTTGCGTAGTAAATTCCCACAAATCAGAGCA---CGGC--------------A-CTGGTCAAATAATGACCCG---TCACCGCACTGCCATGCTTTTATGGGCGCGAC-GTCATCTGGACTGGAG---------AATGGCAGACCAG----GTTCGCCGGGCAGTACTTG------GCACAGATCAATGTTTTCAGATTGC-----CGGTAGTTTTCCCTGCTTCTTAC--CAAATTGAGAATAT----------C---TG--GGTCATAAAGCGAGAGC-A-A------------------AATCTTTG-----------AAG---------CGAGAATCTTGGAATGTGCCAAATG-CATTGGTTTTGCGTT-----ATGTTACGTCGAGGTGCCGTCAAATTATTG
gi|111165 : GCCATGGCTAC-CTTCGCTGCT-GGCTG-GGCAT--CATGCCTAGAGTACG-GACTATTCGT--TA-CCGTTTGCGTCGTAACTCCCAACTAATCACAGT-GCACGGCGCCCATACACTAG-AACTGGTCAAATAATGATCCGACATCACCTCGCTGCCATGCTTTTATGTGTGCGAC-GTCATCT-----------------AAATGGCAGCCCAT----GTTCACCAGGCAATACTTG------AACCAGGTCAATGTTTTCACATGGC-----CGGAAGTTTCCATTGATCCTTGC-AAAAATTGAGAACAT----------C---TA--GGTCATAAA-----------A-CCACCAAAA----TGATAATCTCTGTGATTAAGTTTAGGCGTTGCTA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGCGTT-----ACGTTACGTCGAGACGCCGGAAAATTATTGAAT--ACATAC-CTGCA
gi|111166 : TACTCTTCACAGCT-GG--GTG-CATTTGGTGTCTC-AGGACA-GACTACCGGT--AA-TCATTTGCGTGGTAACTC----------AGAGCA---CGGCGCCCATACACC-------GGTCAAATAATGACCCGACGTCACCGGGCTTCCACGCTTTAATGGGCGATAT-GTCATTTTAACAAGAG---------AATGGCAGATCAG----GTTCACCAGGCAATACATG------GTACAGATCAATGTTCTCACATGGC------------------TGATCCTTAC-CAAAATTGATATTGT----------T---TA--GGTCATAAAGCGAGAGCGA-A-CCACCAAAA----TGATAATCTTTCTGATTTGACTCAGGCGTTGCAG-CGAGAATCGGGGAA------------------TTTTGCGTA-----ATGTTACGTCGAGGCGCAGTACAATTATTGAAT--ACATAC-CTGTA
gi|111167 : TAATGACCCGACGTCACATCGCTGCCATGTTTTTATGTGTGCGAC-GTCATCTGAACTGGAGC-----T-AAATGGCAGCCCAT----GTTCACCAGGCAATACTTG------ACCCAGGTCAATGTTCTCACATGGC-----CGGAAGTTTCCCTTGGTCCTTGC-AAAAGTTAAGAATAT----------C---TG--GGTCATAAA
gi|111168 : C-GTCATCTGAACAAGAG---------AATGACAG-------------ATCA-----TACTTA------GCATAGATCAATGTTTTCGCATGAC-----CGGTAGTTTCCCCTGATCCATAC-CAATATTAAGAATTT----------C---TG--GGTCGTAAAGAGAGGGC-AGA-CCACC-AAA----TGGTTCTCTTTTTGATTTGATTAATGCGTTGCAACCGGGAATCGATGAATTTGCCAAATG-CATTGGTTTTACATT-----ACG--ATGT------GCCGTAGAATTATTGAAT--ACATAC-CTGCAa
gi|111169 : TCGGAACTGGAGC-----T-AAATGGCAGCCCAT----GTTCACAAGGCAATACTTG------AACCAGGTCAATGTTTTCACATGGC-----CGGAAGTTTCCCTTGATCCTTGC-AAAAATTGAGAATAC----------C---TG--GGTCATAAA-----------A-CCACCAAAA----TGATAATCTCTTTTATTTAGCTTAGGCGTTGCTA-CGGGGATCGAGGAATTTGCCAAATG-CATTGGTTTTGGGTT-----ACGTTACGTGGAGACGCCGTAAAATTATTAAAA--ACACACACTG
gi|111170 : CCAG----GGTCACCACTCAATTCTTGCAGCAAAACAATGTCAACGTCATGCCATGGC-----CCGCGGTTTCCCCGGATC-TCAC-ATA---TGAGCACATATGGGATCAGC---TG--GGCCGCAAAGCACGAGCTA-A-CCATCAGAT----TGACAATGTTCGCGATCTTACACGGGCGTTACAA-CAGGAATGGAGGAATTTGCCCAACG-CACTGGTATTGCGTT-----ACGTTACGTCGATGCGGCATAAGATCATTGCTT--GCATTC-ATGCA
gi|111171 : AGATCAAAGTGTTCACATGGC-----TGGTAGTTT------ATC-------AAAATTGAGAATAT----------C---TG--TGTCATAAAGCGAGAGC-A-A-TGAACAAAAATGATGATTATCTTTGTGATTTGACTCAGGCGTTTCAG-CGGGAATCGAGGATTTTGCTAAATG-CATTGGTTTTGCGTT-----ACGTCACGTCGAAAAGCTGTAAAATTATTGAATACACATAC-CTGCA
gi|111172 : TCAATGTTTCCATATGGC-----CGGTAGTTTCCAATGATCCTTAC-CAAAATTGAGAATAA----------C---TG--GGTTACAAATTGAGAGC-A-AACCACCAAA-----TGATAATCTTTGTGATCTTACTCCGGTGTTGCGG-CGGGAATCGAGGAATTTGCGAAATGAAATTGGTTTTGCGT
gi|111173 : GCTG-CGGGGATCGAGGAATTTGCCTAATG-CAATGGTTTTGCGTTACGTTACGTTACGTCGAGACGCCGTAAAATTATTGAAT--ACATAC-CTACA