lowQualScore : 111111111 11111111111 1 111111 111111111 3333333333333333333333333333333 3333333 1 1111111111 11 1
lowQualScore : 2 4 1 3 3 3 4 666666666 777 55555555555 2 8888 1 4 1 3 000000 3 666 444444444 7777777777777777777777777777777 3 7777 1 2 2 2 4 2 555 6666 777777 0 1111111 2 1 2 3 2 6 55 5 22 666666 8888888888 2 2 55 00 4444 2 2
lowQualScore : . . . . . . . ......... ... ........... . .... . . . . ...... . ... ......... ............................... . .... . . . . . . ... .... ...... . ....... . . . . . . .. . .. ...... .......... . . .. .. .... . .
lowQualScore : 6 0 6 6 1 1 0 000000000 888 66666666666 2 5555 6 0 6 6 555555 6 444 555555555 0000000000000000000000000000000 3 1111 8 9 9 9 9 9 000 1111 777777 9 3333333 4 7 7 3 7 0 99 0 00 888888 8888888888 2 2 33 22 7777 8 2
consensus : AATTGACACTGCGAATGTCAATCATTG-TCCTAAACA-TGACCAAGATACATA-A-GCTCCGCCTTTATCGGTTGTAAGCCAATCAGATTGCAGATGATATCA-G---------AA---ACTT-TCA---ACGTGA----TTACACACGAGAGGTGT-TACAATCAA-ATTCGACACAGC------ACGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTATCGGTTTTC----ATATAGTTTACCGCCGAAACAACGATAAAG-AAA-A-TCAATA-TA---TAA----AACTGT------ATACCAAAGAC----GATCTTTAACAC-GTCCGA-AACTTTTAG--AAAAGTGCGACTTGAAATTCGAAGCACA------ACTGTGCC--------CAAGACC-AAAAATAAA-CAATCTG--AAAAACTG-TGA----AAAAGAAATGACACAAAA-TCGTTTCTGAA
Reference ( gi|133306 ) : AATTGACACTGTGAATGTCAATCATTG-TCCTAAACA-TGACCAAGATACATA-A-GCTCCGCCTTTATCGGTTGTAAGCCAATCAGATTGCAGATGATATCA-G---------AA---ACTG-TCA---GCGTGA----TTACACACGAGAGGTGT-TACTATCAA-ATTCGACACAGC------ACGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTATCGGTTTTC----ATATAGTTTACCACCGAAACAACGATAAAG-AAA-A-TTAATA-TA---TAA----AACTGT------ATACCAAATAT----GATCTTTAACAC-GTCCGA-AATTTTTAG--AAATGTGCGACTTGAAATTCGAAGCACA------ACTGTGCC-------ACAAGACC-AAAAATAAA-CAATCTG--AAAAACTG-CGA----AAAAGATATGACACAAAA-TCGTTTCTGAA
gi|133307 : AATTGACACTGTGACTGTCAATCATTG-TCTTAAATA-TGACCAAGATACATACATACTCCACCTTTATCGGTTGTAAGCCAATCAGATTGCAGATGATATCA-G---------AA---ACTT-TCA---ACATGA----TTACACATGAGAGGTGT-TACAATCAA-ATTCGACACAGC------AAGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCATATCGGTTTTC----ATATAGTTTACCGCTGAAACAACGATAAAG-AAA-A-TCAATG-TA---TAA----AACTGT------CTACCAAATAT-----ATCTTTAACAC-GTCTGA-AATTTTTAG--AAAAGTGCGACTTGAAATTCGAAGCACA------ACTGTGCC-------ACAAGACC-AAAAATAAA-CAATCTG--AAAAACTG-CGA----AAAAGATATGATAAAAAA-TCGTTTCTGAA
gi|133309 : AATTTACACTGCGAATGTCAATCATTG-TCCTAAACA-TGACGTAGATACATA-A-GCTCCGCCTTTATTGGTTGTAAGCCAATCAGATTGCAGATAATATCA-G---------AA---ATTT-TCA---ACGTGA----ATACACACGAGAGGCGT-TACAATCAA-ATTCGACCCTGC------ACGAC-TT---AT---------TGGCAT-----------A-------------------TATATCGTAC-TCTTATCGGTTTTC----ATATAGTTTACCGCCGAAACAACGATAAAG-AAA-A-TCAATA-TA---TAA----AACTGT------AAACCAAAGAA----GATCTTTAACAC-GTCTGA-AACTTTTAG--AAAAGTGCGACTTGAAGTTCAAAGCACA------ACTGTGCCATAAGTGACAAGACC-AAAAATAAA-CAATCTG--AAAAACTT-TGA----AAAAGAAATGACACAAAA-TTGTTTCTGAAatagtt
gi|133308 : AATTGACACTGCAAATGTAAATCATTG-TCCTAAACA-TGACCAAGATACATA-A-GCTCCGCTTTTGTCGATTGTAAGCCAATCAGATTACAGATGATATCACA---------AA---ACTT-TCA---ACTTGA----TTGCACACGAGTGGTGT-GACAATCAA-ATTCGACACAGC------ACGAC-TA---AT---------TGGCAT-----------A-------------------TATTTCATGG-TCTTAT-GGTTTTC----ATATAGTTTACCGCCGAAACAACGATAAAG-AAA-A-TCAATA-TA---TAA----AAATGT------ATAATGAAGAC----GATCTTTAACAC-GTCCGA-AACTTTTAG--AAAAGTGCAACTTGAAATTCGAAGCACA------ACTGTGTC-------ACAAGACC-AAAAATAAA-CAATTTG--AAAAACTG-TGA----AATAGAAATGACACAAAA-TCGTTTCTGAAatggtt
gi|133310 : AATTGACACTGCGAATGTCAATCATTG-TTCTAAACA-TTACCAAGATACATA-A-GCTCCGCCTTTATTGGTTGTAAGCCAATCAGATTGCAGATGATA----G---------AA---A-------------TGA----TTTCACACGGGAGGTGT-TACAATCAA-ATTAGACACAGC------ACGAC-TATAAAT---------TGGCAT-----------A-------------------TATCTCGTAG-TTGTATCGGTTTTC----ATATAGTTTACCACCGAAACAAAGGTAAAG-AAA-A-TTAATA-TA---TAA----AACTGT------ATACCAAAGAT----GATCTTTAACAC-GTCCAA-AACTTTTAA--AGAAGTGCGACTTGAAATTCGAAGCACA------ATTGTGCC-------ACAAGACC--AAAATAAA-CAATCTG--AAAAATTG-TGA----AAAAGAAATGACACAAAA-TCATTTCTGAAatagtt
gi|133311 : AATTGACACTGCGAATGTCAATCATTG-TCCTAAACA-TGACCAAGATATATA-A-GCTCCGCCTTTATCAGTTGTAAGCCAATCAGATTGCAGAAAATATCA-G---------AA---ACTT-TCA---ACGTGA----TTACAC-----------------TCAA-ATTCAACACAGC------ACGAC-CA---AT---------TGGCAT-----------AAATTGCTTTAACGCAAATATATTTCATAG-TCTTATCAGTTTTC----ATTT-GTTTACCACCGAAACAACAATAAAG-AAA-A-TCTATAATA---TAA----AACTCT------ATATCAAAACC----GATCTTTAACAC-GTCCTA-AACTTTTAG--AAAAGTGTGATTTGAAATTCTAAGCACA------ACTGTGCT-------ACAAGACC-AAAAATAAA-CAATCTG--TAAAACTG-CGA----AAAAGAAATTACACAAAA-TCATTTCTGAAattgtt
gi|133312 : AATTGACACTGAGAATGTCAATCATTA-CCGTAAACA-TAACCCAAATACAAA-A-GCTCCACCCTTATCGATTGAAAGCCAGTTAGATTGCAGATGATAACA-GGTAATCTCGAA---AGTGATTACACGTGTGAGTGGTTACACACAAGAAGTGAACATTA-CAA-ACTCCACGCAGC----------C-TA---ATCTGTATCACTGAAAT-----------A-------------------TATCTCGTAG-TCTT--CGGTTTAC----ATATATTTTACCACTGAAGCAATGATAAAG-AAA-AGTCAATA-T-----------AACTGT------ATATCAAAGAC----GATCTTCAACAA-GGC--ATATTTTTTAGATAAATCT--GACTTGAAATTCAAA---------------------------------------ATAAA-GAAACTGAAAAAAAATG-TG-----AAAAGACTTGGCGCAAAG-TCATTTCTGAAattgtt
gi|133313 : AATTGACACTGCAAATGTCAATCATGA-CCGTAAACA-TGAACCAGATACATA-A-ACTCCGCCTCTATTGGTTGTAAGCCAATCAGATTACAGATGGTATCA-G---------AAATCACGG-ACA---ACATGA----TTACACACAAGA--TGT-T-TTATAAACATT--ACATGGCTAAGATATGATGTA---AT---------TGGCATGAATTGCTGAAA-------------------TATCTTAAAGTTTTTACAGGTTCTC----ACAT-GTTatcgtt
gi|133314 : AATTGACACTGCGAATGTCAATCATTG-TCCTAAACATTGACCAAGATACATA-A-GCTCCGCCTTT
gi|133315 : ATACAGTGA-TGTCTGTCATTGATTGTAAACA-TGATCAAGAAACTTT-G-GCTCCATCCATATCAGTTGTCAGTCAGTCATGTTAC
gi|133316 : CTATGAATGTCAATCATTG-TCATAAACA-TAACCAAGATACATA-A-GCTCCACCCTTATCGGT
gi|133317 : CA-TGCCCAAGATACATA-A-GCTCCACCTTTAACGGTTGTAAGCCAATCAGATTGCAGATTATATTA-G---------AC---ACAT-TCA---ACATGA----TTACACACAAGAGGTGT-TATAATCAA-ATTCGACACAGC------ACGAC-TA---AC---------TGGCAT-----------T-------------------TATCTCGTAA-TCTTATTGGTTTTC----ATATAGTTTTCCGCCGAAACAACCATAAGG-AAA-A-TCAATA-TA---TAA----AACTGT------ACACCAAAGAC----AATCTTTAACAT-GTGCTA-AACTTTTAG--AAAAGTGTGACTTAATATTCGAAGTACA------ACTGTGCC--------CAAGACC-AAAAATAAA-CAATCTG--AAAA------GA----A------ATGACAC-AAA-TCGTTTCTGAA
gi|133318 : AAGATA-ATA-----TCCGCCCTTATGAGTAGAAAGCCAATCAGATTTAAGACGATATCA-G---------Aattgtt
gi|133319 : ATA-A-ACTCCTCCCTTATCAGTAGTAAGCCAATCAGATTAAAGATGGTATCA-G---------AA---
gi|133320 : TGA----TTACACACGAAAGGTGT-TACAATTAA-ATTCGACACAGC------ACGAC-TA---AT---------TGGCAC-----------T-------------------TACCTCGTAG-TCTTATCGGTTTTC----ATATAGTTT------------ACGATAAAGAAAA-A-TCAATA-TA---TAA----AACTGT------ATACCAAAGAC----GATCCTTAACAC-GTCTGA-AACTTTTAA--AAAAGTGTGACTTGAAATTCGAAGCACA--------------------------ACC-AAAAATAAA-CAATCTG--AAAAACTG-TGA----AATAGAAATGACACAAAA-TCGTTTCTGAA
gi|133321 : TGA----CTACACACGAGATGTGT-TACAATCAA-ATTCGACACAAT------ACAAC-TA---AC---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTGTCAGTTTTC----ATATAG--TA----------AACGATAAAG-AAA-A-TCAATA-AAAATCAAGCACAACTGTGCCACAAGACCAAAAATAAACAATCTGAAAAACTGT--GA-AA----TAG--AAATGatagtt
gi|133322 : -ATTTGCCA-ATC------AAGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTATCGGTTTTCTTGTATATAacacaaaattgtttctgaaatagtt
gi|133323 : AT-----------A-------------------TGTCTCGTAG-TTTTTTCGGTTTAC----ATATACTTTGCCAACAACGCAAC-ATAAAG-AAATG-TCAGTA-T-----------AACTGT------ATATCAAAAAC----GATATTTAACAA-AGCCAA-ACATTTTAG--AAA------A---AAAATCCGA-----A------ATTCT---------------------AAAT-AA-CAAACTGA-AAAAATTG-TG-----GAAAGTCATGACGCAAAG-TTGTTTCaaagacgatcttgaacacgtccgaaactttaagaaaagtgtgacttaaaattcgaagcaatctgaaaaactgtgaaaaagaaatgacacaaaattgtttctgaaat
gi|133324 : G-AAA-A-CCAATA-TA---TAA----AACTGT------ATAACAAA-------GA--------------CGA-AACTTTTAG--AAAAGTGCGACTTGAAATTCGAAGCACA------ACTGTGCC-------TGAAGACC-AAAAGTTAA-CAATCTG--AAAAACTG-TGA----AAAAGAAATAATACAAAATTCGTTTCTGAAagtatctgaaatagtt
gi|133325 : G-AAA-A-CCAATA-TA---TAA----AACTGT------ATAACAAA-------GA--------------CGA-AACTTTTAG--AAAAGTTCGACTTGAAATTCGAAGCACA------ACTGTGCC-------TGAAGATC-AAAAGTAAA-CAATCTG--AAAAACTG-TGA----AAAAGAAATAATACAAAT-TCGTTTCTGAAatggtt
gi|133326 : G-AAA-A-CCAATA-TA---TAA----AACTGT------ATAACAAA-------GA--------------CGA-AACTTTTAG--AAAAGTTTGACTTGAAATTCGAAGCACA------ACTGTGCC-------TGAAGACC-AAAAGTAAA-CAATCTG--AAAAACTG-TGA----AAAAGAAATAATACAAAT-TTGTTTCTGAAatggtt
gi|133327 : G-AAA-A-CCAATA-TA---TAA----AACTGT------ATACCAAA---------------AC-C-GT-----AACTTTTAG--AAA-------------------AG------------TGTGCC-------TGAAGACC-AAAAATAAA-CAATCTG--AAAAACTG-TGA----AAAAGAAATGACACAAAA-TCATTTCTGAAatggtt
gi|133322 : TGT------ATATAAAAGAC----GATCTTGAACAC-GTCCGA-AACTTTAAG--AAAAGTGTGACTTAAAATTCGAAGCA-A------TCTG--------------------AAAAA---------CTG--------TG---A----AAAAGAAATGACACAAAA-TTGTTTCTGAAattgtt
gi|133328 : atttgccaatcaagactaattggcatatatctcgtagtcttatcggttttctATTTTTCGT-AAATG--CAAGTTGAGATTCGGAGCATATGAAAAAC-ATGC----------GAGACC-AAAAAAAAAACAATTTG--AAAAACTGTCTAATACAAAAGAT------CAAAG-TCATTTTTGAAat
gi|133321 : TAAAAATC-AAGCACA------ACTGTGCC-------ACAAGACC-AAAAATAAA-CAATCTG--AAAAACTG-TGA----AATAGAAATGACACAAAA-TTGTTTCTGAAattgtt
gi|133329 : tgactacacacgagatgtgttacaatcaaattcgacacaatacaactaactggcatatatctcgtagtcttgtcagttttcatatagtaaacgataaagaaaatcaa------ACT-TNNN-------NNNNNNNC-AAAAGTAAA-CAATCTG--AAAAACTG-TGA----AATATAAATGACACAAAA-TTGTTTCTGAAatagtt
gi|133330 : CAAGATTGAAAAATAAA-CAATCTG---AAAACTGTTAA----AAAAGAAATGATACAAAG-TCGTTgtagtt
Alignments
lowQualScore : 2222222222222222 111111111 3333333333333333333333333333333 22222222222
lowQualScore : 3 0 3 2 2 3 1 0 777 4 0 4444444444444444 3 999999 3 555 333333333 3333333333333333333333333333333 3 6666 1 2 2 2 2 0 2 9999 2 666666 88888888888 2 2 55 2 2
lowQualScore : . . . . . . . . ... . . ................ . ...... . ... ......... ............................... . .... . . . . . . . .... . ...... ........... . . .. . .
lowQualScore : 6 5 3 9 9 6 9 9 888 4 9 1111111111111111 6 666666 3 888 333333333 5555555555555555555555555555555 1 5555 8 7 7 7 7 9 4 3333 5 444444 88888888888 1 1 00 1 1
consensus : AATTGACACTGCGAATGTCAATCATTG-TCCTAAACA-TGACCAAGATACATA-A-GCTCCGCCTTTATCGGTTGTAAGCCAATCAGATTGCAGATGATATCA-GAAACTTT---C-AACGTGATTA----------------CACACGAGAGGTGTTACAAT-CAAATTCGACACAGC------ACGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTATCGGTTTTC----ATATAGTTTACCGCCGAAACAACGATAAAG-AAA-A-TCAATA-TATAAAACTGTATACCAAAGACGATCTTTAACACGTCCGA-AAC-TTTTAGAAAAGTGCGACTTGAAATTCGAAGCACA------ACTGTGCC--------C-AAGACC-AAAAATAAA-CAATCTG--AAAAACTG-TGAAAAAGAAATGACACAAAA-TCGTTTCTGAA
Reference ( family-733 ) : AATTGACACTGCGAATGTCAATCATTG-TCCTAAACA-TGACCAAGATACATA-A-GCTCCGCCTTTATCGGTTGTAAGCCAATCAGATTGCAGATGATATCA-GAAACTTT---C-AACGTGATTA----------------CACACGAGAGGTGTTACAAT-CAAATTCGACACAGC------ACGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTATCGGTTTTC----ATATAGTTTACCGCCGAAACAACGATAAAG-AAA-A-TCAATA-TATAAAACTGTATACCAAAGACGATCTTTAACACGTCCGA-AAC-TTTTAGAAAAGTGCGACTTGAAATTCGAAGCACA------ACTGTGCC--------C-AAGACC-AAAAATAAA-CAATCTG--AAAAACTG-TGAAAAAGAAATGACACAAAA-TCGTTTCTGAA
gi|133306 : AATTGACACTGTGAATGTCAATCATTG-TCCTAAACA-TGACCAAGATACATA-A-GCTCCGCCTTTATCGGTTGTAAGCCAATCAGATTGCAGATGATATCA-GAAACTGT---C-AGCGTGATTA----------------CACACGAGAGGTGTTACTAT-CAAATTCGACACAGC------ACGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTATCGGTTTTC----ATATAGTTTACCACCGAAACAACGATAAAG-AAA-A-TTAATA-TATAAAACTGTATACCAAATATGATCTTTAACACGTCCGA-AAT-TTTTAGAAATGTGCGACTTGAAATTCGAAGCACA------ACTGTGCCA-------C-AAGACC-AAAAATAAA-CAATCTG--AAAAACTG-CGAAAAAGATATGACACAAAA-TCGTTTCTGAA
gi|133307 : AATTGACACTGTGACTGTCAATCATTG-TCTTAAATA-TGACCAAGATACATACATACTCCACCTTTATCGGTTGTAAGCCAATCAGATTGCAGATGATATCA-GAAACTTT---C-AACATGATTA----------------CACATGAGAGGTGTTACAAT-CAAATTCGACACAGC------AAGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCATATCGGTTTTC----ATATAGTTTACCGCTGAAACAACGATAAAG-AAA-A-TCAATG-TATAAAACTGTCTACCAAATAT-ATCTTTAACACGTCTGA-AAT-TTTTAGAAAAGTGCGACTTGAAATTCGAAGCACA------ACTGTGCCA-------C-AAGACC-AAAAATAAA-CAATCTG--AAAAACTG-CGAAAAAGATATGATAAAAAA-TCGTTTCTGAA
gi|133308 : AATTGACACTGCAAATGTAAATCATTG-TCCTAAACA-TGACCAAGATACATA-A-GCTCCGCTTTTGTCGATTGTAAGCCAATCAGATTACAGATGATATCACAAAACTTT---C-AACTTGATTG----------------CACACGAGTGGTGTGACAAT-CAAATTCGACACAGC------ACGAC-TA---AT---------TGGCAT-----------A-------------------TATTTCATGG-TCTTAT-GGTTTTC----ATATAGTTTACCGCCGAAACAACGATAAAG-AAA-A-TCAATA-TATAAAAATGTATAATGAAGACGATCTTTAACACGTCCGA-AAC-TTTTAGAAAAGTGCAACTTGAAATTCGAAGCACA------ACTGTGTCA-------C-AAGACC-AAAAATAAA-CAATTTG--AAAAACTG-TGAAATAGAAATGACACAAAA-TCGTTTCTGAAatagtt
gi|133309 : AATTTACACTGCGAATGTCAATCATTG-TCCTAAACA-TGACGTAGATACATA-A-GCTCCGCCTTTATTGGTTGTAAGCCAATCAGATTGCAGATAATATCA-GAAATTTT---C-AACGTGAATA----------------CACACGAGAGGCGTTACAAT-CAAATTCGACCCTGC------ACGAC-TT---AT---------TGGCAT-----------A-------------------TATATCGTAC-TCTTATCGGTTTTC----ATATAGTTTACCGCCGAAACAACGATAAAG-AAA-A-TCAATA-TATAAAACTGTAAACCAAAGAAGATCTTTAACACGTCTGA-AAC-TTTTAGAAAAGTGCGACTTGAAGTTCAAAGCACA------ACTGTGCCATAAGTGAC-AAGACC-AAAAATAAA-CAATCTG--AAAAACTT-TGAAAAAGAAATGACACAAAA-TTGTTTCTGAAatagtt
gi|133310 : AATTGACACTGCGAATGTCAATCATTG-TTCTAAACA-TTACCAAGATACATA-A-GCTCCGCCTTTATTGGTTGTAAGCCAATCAGATTGCAGATGATA----GAAA-------------TGATTT----------------CACACGGGAGGTGTTACAAT-CAAATTAGACACAGC------ACGAC-TATAAAT---------TGGCAT-----------A-------------------TATCTCGTAG-TTGTATCGGTTTTC----ATATAGTTTACCACCGAAACAAAGGTAAAG-AAA-A-TTAATA-TATAAAACTGTATACCAAAGATGATCTTTAACACGTCCAA-AAC-TTTTAAAGAAGTGCGACTTGAAATTCGAAGCACA------ATTGTGCCA-------C-AAGACC--AAAATAAA-CAATCTG--AAAAATTG-TGAAAAAGAAATGACACAAAA-TCATTTCTGAAatggtt
gi|133311 : AATTGACACTGCGAATGTCAATCATTG-TCCTAAACA-TGACCAAGATATATA-A-GCTCCGCCTTTATCAGTTGTAAGCCAATCAGATTGCAGAAAATATCA-GAAACTTT---C-AACGTGATTA----------------CAC----------------T-CAAATTCAACACAGC------ACGAC-CA---AT---------TGGCAT-----------AAATTGCTTTAACGCAAATATATTTCATAG-TCTTATCAGTTTTC----ATTT-GTTTACCACCGAAACAACAATAAAG-AAA-A-TCTATAATATAAAACTCTATATCAAAACCGATCTTTAACACGTCCTA-AAC-TTTTAGAAAAGTGTGATTTGAAATTCTAAGCACA------ACTGTGCTA-------C-AAGACC-AAAAATAAA-CAATCTG--TAAAACTG-CGAAAAAGAAATTACACAAAA-TCATTTCTGAAattgtt
gi|133312 : AATTGACACTGAGAATGTCAATCATTA-CCGTAAACA-TAACCCAAATACAAA-A-GCTCCACCCTTATCGATTGAAAGCCAGTTAGATTGCAGATGATAACA-GGTAATCT---CGAAAGTGATTACACGTGTGAGTGGTTACACACAAGAAGTGA-ACATTACAAACTCCACGCAGC----------C-TA---ATCTGTATCACTGAAAT-----------A-------------------TATCTCGTAG-TCTT--CGGTTTAC----ATATATTTTACCACTGAAGCAATGATAAAG-AAA-AGTCAATA-T----AACTGTATATCAAAGACGATCTTCAACAAGGC--ATATT-TTTTAGATAAATCTGACTTGAAATTC----------------------------------------AAAATAAA-GAAACTGAAAAAAAATG-TG-AAAAGACTTGGCGCAAAG-TCATTTCTGAAattgtt
gi|133313 : AATTGACACTGCAAATGTCAATCATGA-CCGTAAACA-TGAACCAGATACATA-A-ACTCCGCCTCTATTGGTTGTAAGCCAATCAGATTACAGATGGTATCA-GAAATCACGGAC-AACATGATTA----------------CACACAAGATGTTTTATAA---ACATT--ACATGGCTAAGATATGATGTA---AT---------TGGCATGAATTGCTGAAA-------------------TATCTTAAAGTTTTTACAGGTTCTC----ACAT-GTTatcgtt
gi|133314 : AATTGACACTGCGAATGTCAATCATTG-TCCTAAACATTGACCAAGATACATA-A-GCTCCGCCTTT
gi|133315 : ATGTCTGTCATTGATTGTAAACA-TGATCAAGAAACTTT-G-GCTCCATCCATATCAGTTGTCAGTCAGTCATGTTAC
gi|133316 : atacagtgCTATGAATGTCAATCATTG-TCATAAACA-TAACCAAGATACATA-A-GCTCCACCCTTATCGGT
gi|133317 : CA-TGCCCAAGATACATA-A-GCTCCACCTTTAACGGTTGTAAGCCAATCAGATTGCAGATTATATTA-GACACATT---C-AACATGATTA----------------CACACAAGAGGTGTTATAAT-CAAATTCGACACAGC------ACGAC-TA---AC---------TGGCAT-----------T-------------------TATCTCGTAA-TCTTATTGGTTTTC----ATATAGTTTTCCGCCGAAACAACCATAAGG-AAA-A-TCAATA-TATAAAACTGTACACCAAAGACAATCTTTAACATGTGCTA-AAC-TTTTAGAAAAGTGTGACTTAATATTCGAAGTACA------ACTGTGCC--------C-AAGACC-AAAAATAAA-CAATCTG--------------AAAAGAAATGACAC-AAA-TCGTTTCTGAA
gi|133318 : AAGATA-ATA-----TCCGCCCTTATGAGTAGAAAGCCAATCAGATTTAAGACGATATCA-GAattgtt
gi|133319 : ATA-A-ACTCCTCCCTTATCAGTAGTAAGCCAATCAGATTAAAGATGGTATCA-GAA
gi|133320 : TGATTA----------------CACACGAAAGGTGTTACAAT-TAAATTCGACACAGC------ACGAC-TA---AT---------TGGCAC-----------T-------------------TACCTCGTAG-TCTTATCGGTTTTC----ATATAGTTT------------ACGATAAAGAAAA-A-TCAATA-TATAAAACTGTATACCAAAGACGATCCTTAACACGTCTGA-AAC-TTTTAAAAAAGTGTGACTTGAAATTCGAAGCACA---------------------------ACC-AAAAATAAA-CAATCTG--AAAAACTG-TGAAATAGAAATGACACAAAA-TCGTTTCTGAA
gi|133321 : TGACTA----------------CACACGAGATGTGTTACAAT-CAAATTCGACACAAT------ACAAC-TA---AC---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTGTCAGTTTTC----ATATAG--TA----------AACGATAAAG-AAA-A-TCAATA----AAAAatagtt
gi|133321 : TAAAAATC-AAGCACA------ACTGTGCCA-------C-AAGACC-AAAAATAAA-CAATCTG--AAAAACTG-TGAAATAGAAATGACACAAAA-TTGTTTCTGAAtcaagcacaactgtgccacaagaccaaaaataaacaatctgaaaaactgtgaaatagaaatgacacaaaattgtttctgaaatagtt
gi|133322 : tgactacacacgagatgtgttacaatcaaattcgacacaatacaactaactggcatatatctcgtagtcttgtcagttttcatatagtaaacgataaagaaaatcaaATTTGCCA-ATC------AAGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTATCGGTTTTCTTGTATATAatagtt
gi|133322 : TGTATATAAAAGACGATCTTGAACACGTCCGA-AAC-TTTAAGAAAAGTGTGACTTAAAATTCGAAGCA-A------TCTG---------------------AAAA-------------------ACTG-TGAAAAAGAAATGACACAAAA-TTGTTTCTGAAaaagacgatcttgaacacgtccgaaactttaagaaaagtgtgacttaaaattcgaagcaatctgaaaaactgtgaaaaagaaatgacacaaaattgtttctgaaat
gi|133323 : atttgccaatcaagactaattggcatatatctcgtagtcttatcggttttctAT-----------A-------------------TGTCTCGTAG-TTTTTTCGGTTTAC----ATATACTTTGCCAACAACGCAAC-ATAAAG-AAATG-TCAGTA-T----AACTGTATATCAAAAACGATATTTAACAAAGCC-A-AACATTTTAGAAAA---------AAAATCCGA-----A------ATTCT----------------------AAAT-AA-CAAACTGA-AAAAATTG-TG-GAAAGTCATGACGCAAAG-TTGTTTCat
gi|133324 : G-AAA-A-CCAATA-TATAAAACTGTATAACAAAGACGA-----------------AAC-TTTTAGAAAAGTGCGACTTGAAATTCGAAGCACA------ACTGTGCC--------TGAAGACC-AAAAGTTAA-CAATCTG--AAAAACTG-TGAAAAAGAAATAATACAAAATTCGTTTCTGAAagtatctgaaatagtt
gi|133325 : G-AAA-A-CCAATA-TATAAAACTGTATAACAAAGACGA-----------------AAC-TTTTAGAAAAGTTCGACTTGAAATTCGAAGCACA------ACTGTGCC--------TGAAGATC-AAAAGTAAA-CAATCTG--AAAAACTG-TGAAAAAGAAATAATACAAAT-TCGTTTCTGAAatggtt
gi|133326 : G-AAA-A-CCAATA-TATAAAACTGTATAACAAAGACGA-----------------AAC-TTTTAGAAAAGTTTGACTTGAAATTCGAAGCACA------ACTGTGCC--------TGAAGACC-AAAAGTAAA-CAATCTG--AAAAACTG-TGAAAAAGAAATAATACAAAT-TTGTTTCTGAAatggtt
gi|133327 : G-AAA-A-CCAATA-TATAAAACTGTATACCAAA-----------AC-CGT-----AAC-TTTTAGAAAAGTGTG-CCTGAA--------------------------------------GACC-AAAAATAAA-CAATCTG--AAAAACTG-TGAAAAAGAAATGACACAAAA-TCATTTCTGAAatggtt
gi|133328 : AT-TTTTCGTAAA-TGCAAGTTGAGATTCGGAGCATATGAAAAAC-ATGC-----------GAGACC-AAAAAAAAAACAATTTG--AAAAACTG-TCTAATACAAAAGAT-CAAAG-TCATTTTTGAAattgtt
gi|133329 : ------ACTTNNNN--------N-NNNNNC-AAAAGTAAA-CAATCTG--AAAAACTG-TGAAATATAAATGACACAAAA-TTGTTTCTGAAattgtt
gi|133330 : --------C-AAGATTGAAAAATAAA-CAATCTG---AAAACTGTTAAAAAAGAAATGATACAAAG-TCGTTgtagtt
Alignments
lowQualScore : 2222222222222222 111111111 3333333333333333333333333333333 22222222222
lowQualScore : 3 0 3 2 2 3 1 0 777 4 0 4444444444444444 3 999999 3 555 333333333 3333333333333333333333333333333 3 6666 1 2 2 2 2 0 2 9999 2 666666 88888888888 2 2 55 2 2
lowQualScore : . . . . . . . . ... . . ................ . ...... . ... ......... ............................... . .... . . . . . . . .... . ...... ........... . . .. . .
lowQualScore : 6 5 3 9 9 6 9 9 888 4 9 1111111111111111 6 666666 3 888 333333333 5555555555555555555555555555555 1 5555 8 7 7 7 7 9 4 3333 5 444444 88888888888 1 1 00 1 1
consensus : AATTGACACTGCGAATGTCAATCATTG-TCCTAAACA-TGACCAAGATACATA-A-GCTCCGCCTTTATCGGTTGTAAGCCAATCAGATTGCAGATGATATCA-GAAACTTT---C-AACGTGATTA----------------CACACGAGAGGTGTTACAAT-CAAATTCGACACAGC------ACGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTATCGGTTTTC----ATATAGTTTACCGCCGAAACAACGATAAAG-AAA-A-TCAATA-TATAAAACTGTATACCAAAGACGATCTTTAACACGTCCGA-AAC-TTTTAGAAAAGTGCGACTTGAAATTCGAAGCACA------ACTGTGCC--------C-AAGACC-AAAAATAAA-CAATCTG--AAAAACTG-TGAAAAAGAAATGACACAAAA-TCGTTTCTGAA
Reference ( family-733 ) : AATTGACACTGCGAATGTCAATCATTG-TCCTAAACA-TGACCAAGATACATA-A-GCTCCGCCTTTATCGGTTGTAAGCCAATCAGATTGCAGATGATATCA-GAAACTTT---C-AACGTGATTA----------------CACACGAGAGGTGTTACAAT-CAAATTCGACACAGC------ACGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTATCGGTTTTC----ATATAGTTTACCGCCGAAACAACGATAAAG-AAA-A-TCAATA-TATAAAACTGTATACCAAAGACGATCTTTAACACGTCCGA-AAC-TTTTAGAAAAGTGCGACTTGAAATTCGAAGCACA------ACTGTGCC--------C-AAGACC-AAAAATAAA-CAATCTG--AAAAACTG-TGAAAAAGAAATGACACAAAA-TCGTTTCTGAA
gi|133306 : AATTGACACTGTGAATGTCAATCATTG-TCCTAAACA-TGACCAAGATACATA-A-GCTCCGCCTTTATCGGTTGTAAGCCAATCAGATTGCAGATGATATCA-GAAACTGT---C-AGCGTGATTA----------------CACACGAGAGGTGTTACTAT-CAAATTCGACACAGC------ACGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTATCGGTTTTC----ATATAGTTTACCACCGAAACAACGATAAAG-AAA-A-TTAATA-TATAAAACTGTATACCAAATATGATCTTTAACACGTCCGA-AAT-TTTTAGAAATGTGCGACTTGAAATTCGAAGCACA------ACTGTGCCA-------C-AAGACC-AAAAATAAA-CAATCTG--AAAAACTG-CGAAAAAGATATGACACAAAA-TCGTTTCTGAA
gi|133307 : AATTGACACTGTGACTGTCAATCATTG-TCTTAAATA-TGACCAAGATACATACATACTCCACCTTTATCGGTTGTAAGCCAATCAGATTGCAGATGATATCA-GAAACTTT---C-AACATGATTA----------------CACATGAGAGGTGTTACAAT-CAAATTCGACACAGC------AAGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCATATCGGTTTTC----ATATAGTTTACCGCTGAAACAACGATAAAG-AAA-A-TCAATG-TATAAAACTGTCTACCAAATAT-ATCTTTAACACGTCTGA-AAT-TTTTAGAAAAGTGCGACTTGAAATTCGAAGCACA------ACTGTGCCA-------C-AAGACC-AAAAATAAA-CAATCTG--AAAAACTG-CGAAAAAGATATGATAAAAAA-TCGTTTCTGAA
gi|133308 : AATTGACACTGCAAATGTAAATCATTG-TCCTAAACA-TGACCAAGATACATA-A-GCTCCGCTTTTGTCGATTGTAAGCCAATCAGATTACAGATGATATCACAAAACTTT---C-AACTTGATTG----------------CACACGAGTGGTGTGACAAT-CAAATTCGACACAGC------ACGAC-TA---AT---------TGGCAT-----------A-------------------TATTTCATGG-TCTTAT-GGTTTTC----ATATAGTTTACCGCCGAAACAACGATAAAG-AAA-A-TCAATA-TATAAAAATGTATAATGAAGACGATCTTTAACACGTCCGA-AAC-TTTTAGAAAAGTGCAACTTGAAATTCGAAGCACA------ACTGTGTCA-------C-AAGACC-AAAAATAAA-CAATTTG--AAAAACTG-TGAAATAGAAATGACACAAAA-TCGTTTCTGAAatagtt
gi|133309 : AATTTACACTGCGAATGTCAATCATTG-TCCTAAACA-TGACGTAGATACATA-A-GCTCCGCCTTTATTGGTTGTAAGCCAATCAGATTGCAGATAATATCA-GAAATTTT---C-AACGTGAATA----------------CACACGAGAGGCGTTACAAT-CAAATTCGACCCTGC------ACGAC-TT---AT---------TGGCAT-----------A-------------------TATATCGTAC-TCTTATCGGTTTTC----ATATAGTTTACCGCCGAAACAACGATAAAG-AAA-A-TCAATA-TATAAAACTGTAAACCAAAGAAGATCTTTAACACGTCTGA-AAC-TTTTAGAAAAGTGCGACTTGAAGTTCAAAGCACA------ACTGTGCCATAAGTGAC-AAGACC-AAAAATAAA-CAATCTG--AAAAACTT-TGAAAAAGAAATGACACAAAA-TTGTTTCTGAAatagtt
gi|133310 : AATTGACACTGCGAATGTCAATCATTG-TTCTAAACA-TTACCAAGATACATA-A-GCTCCGCCTTTATTGGTTGTAAGCCAATCAGATTGCAGATGATA----GAAA-------------TGATTT----------------CACACGGGAGGTGTTACAAT-CAAATTAGACACAGC------ACGAC-TATAAAT---------TGGCAT-----------A-------------------TATCTCGTAG-TTGTATCGGTTTTC----ATATAGTTTACCACCGAAACAAAGGTAAAG-AAA-A-TTAATA-TATAAAACTGTATACCAAAGATGATCTTTAACACGTCCAA-AAC-TTTTAAAGAAGTGCGACTTGAAATTCGAAGCACA------ATTGTGCCA-------C-AAGACC--AAAATAAA-CAATCTG--AAAAATTG-TGAAAAAGAAATGACACAAAA-TCATTTCTGAAatggtt
gi|133311 : AATTGACACTGCGAATGTCAATCATTG-TCCTAAACA-TGACCAAGATATATA-A-GCTCCGCCTTTATCAGTTGTAAGCCAATCAGATTGCAGAAAATATCA-GAAACTTT---C-AACGTGATTA----------------CAC----------------T-CAAATTCAACACAGC------ACGAC-CA---AT---------TGGCAT-----------AAATTGCTTTAACGCAAATATATTTCATAG-TCTTATCAGTTTTC----ATTT-GTTTACCACCGAAACAACAATAAAG-AAA-A-TCTATAATATAAAACTCTATATCAAAACCGATCTTTAACACGTCCTA-AAC-TTTTAGAAAAGTGTGATTTGAAATTCTAAGCACA------ACTGTGCTA-------C-AAGACC-AAAAATAAA-CAATCTG--TAAAACTG-CGAAAAAGAAATTACACAAAA-TCATTTCTGAAattgtt
gi|133312 : AATTGACACTGAGAATGTCAATCATTA-CCGTAAACA-TAACCCAAATACAAA-A-GCTCCACCCTTATCGATTGAAAGCCAGTTAGATTGCAGATGATAACA-GGTAATCT---CGAAAGTGATTACACGTGTGAGTGGTTACACACAAGAAGTGA-ACATTACAAACTCCACGCAGC----------C-TA---ATCTGTATCACTGAAAT-----------A-------------------TATCTCGTAG-TCTT--CGGTTTAC----ATATATTTTACCACTGAAGCAATGATAAAG-AAA-AGTCAATA-T----AACTGTATATCAAAGACGATCTTCAACAAGGC--ATATT-TTTTAGATAAATCTGACTTGAAATTC----------------------------------------AAAATAAA-GAAACTGAAAAAAAATG-TG-AAAAGACTTGGCGCAAAG-TCATTTCTGAAattgtt
gi|133313 : AATTGACACTGCAAATGTCAATCATGA-CCGTAAACA-TGAACCAGATACATA-A-ACTCCGCCTCTATTGGTTGTAAGCCAATCAGATTACAGATGGTATCA-GAAATCACGGAC-AACATGATTA----------------CACACAAGATGTTTTATAA---ACATT--ACATGGCTAAGATATGATGTA---AT---------TGGCATGAATTGCTGAAA-------------------TATCTTAAAGTTTTTACAGGTTCTC----ACAT-GTTatcgtt
gi|133314 : AATTGACACTGCGAATGTCAATCATTG-TCCTAAACATTGACCAAGATACATA-A-GCTCCGCCTTT
gi|133315 : ATGTCTGTCATTGATTGTAAACA-TGATCAAGAAACTTT-G-GCTCCATCCATATCAGTTGTCAGTCAGTCATGTTAC
gi|133316 : atacagtgCTATGAATGTCAATCATTG-TCATAAACA-TAACCAAGATACATA-A-GCTCCACCCTTATCGGT
gi|133317 : CA-TGCCCAAGATACATA-A-GCTCCACCTTTAACGGTTGTAAGCCAATCAGATTGCAGATTATATTA-GACACATT---C-AACATGATTA----------------CACACAAGAGGTGTTATAAT-CAAATTCGACACAGC------ACGAC-TA---AC---------TGGCAT-----------T-------------------TATCTCGTAA-TCTTATTGGTTTTC----ATATAGTTTTCCGCCGAAACAACCATAAGG-AAA-A-TCAATA-TATAAAACTGTACACCAAAGACAATCTTTAACATGTGCTA-AAC-TTTTAGAAAAGTGTGACTTAATATTCGAAGTACA------ACTGTGCC--------C-AAGACC-AAAAATAAA-CAATCTG--------------AAAAGAAATGACAC-AAA-TCGTTTCTGAA
gi|133318 : AAGATA-ATA-----TCCGCCCTTATGAGTAGAAAGCCAATCAGATTTAAGACGATATCA-GAattgtt
gi|133319 : ATA-A-ACTCCTCCCTTATCAGTAGTAAGCCAATCAGATTAAAGATGGTATCA-GAA
gi|133320 : TGATTA----------------CACACGAAAGGTGTTACAAT-TAAATTCGACACAGC------ACGAC-TA---AT---------TGGCAC-----------T-------------------TACCTCGTAG-TCTTATCGGTTTTC----ATATAGTTT------------ACGATAAAGAAAA-A-TCAATA-TATAAAACTGTATACCAAAGACGATCCTTAACACGTCTGA-AAC-TTTTAAAAAAGTGTGACTTGAAATTCGAAGCACA---------------------------ACC-AAAAATAAA-CAATCTG--AAAAACTG-TGAAATAGAAATGACACAAAA-TCGTTTCTGAA
gi|133321 : TGACTA----------------CACACGAGATGTGTTACAAT-CAAATTCGACACAAT------ACAAC-TA---AC---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTGTCAGTTTTC----ATATAG--TA----------AACGATAAAG-AAA-A-TCAATA----AAAAatagtt
gi|133321 : TAAAAATC-AAGCACA------ACTGTGCCA-------C-AAGACC-AAAAATAAA-CAATCTG--AAAAACTG-TGAAATAGAAATGACACAAAA-TTGTTTCTGAAtcaagcacaactgtgccacaagaccaaaaataaacaatctgaaaaactgtgaaatagaaatgacacaaaattgtttctgaaatagtt
gi|133322 : tgactacacacgagatgtgttacaatcaaattcgacacaatacaactaactggcatatatctcgtagtcttgtcagttttcatatagtaaacgataaagaaaatcaaATTTGCCA-ATC------AAGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTATCGGTTTTCTTGTATATAatagtt
gi|133322 : TGTATATAAAAGACGATCTTGAACACGTCCGA-AAC-TTTAAGAAAAGTGTGACTTAAAATTCGAAGCA-A------TCTG---------------------AAAA-------------------ACTG-TGAAAAAGAAATGACACAAAA-TTGTTTCTGAAaaagacgatcttgaacacgtccgaaactttaagaaaagtgtgacttaaaattcgaagcaatctgaaaaactgtgaaaaagaaatgacacaaaattgtttctgaaat
gi|133323 : atttgccaatcaagactaattggcatatatctcgtagtcttatcggttttctAT-----------A-------------------TGTCTCGTAG-TTTTTTCGGTTTAC----ATATACTTTGCCAACAACGCAAC-ATAAAG-AAATG-TCAGTA-T----AACTGTATATCAAAAACGATATTTAACAAAGCC-A-AACATTTTAGAAAA---------AAAATCCGA-----A------ATTCT----------------------AAAT-AA-CAAACTGA-AAAAATTG-TG-GAAAGTCATGACGCAAAG-TTGTTTCat
gi|133324 : G-AAA-A-CCAATA-TATAAAACTGTATAACAAAGACGA-----------------AAC-TTTTAGAAAAGTGCGACTTGAAATTCGAAGCACA------ACTGTGCC--------TGAAGACC-AAAAGTTAA-CAATCTG--AAAAACTG-TGAAAAAGAAATAATACAAAATTCGTTTCTGAAagtatctgaaatagtt
gi|133325 : G-AAA-A-CCAATA-TATAAAACTGTATAACAAAGACGA-----------------AAC-TTTTAGAAAAGTTCGACTTGAAATTCGAAGCACA------ACTGTGCC--------TGAAGATC-AAAAGTAAA-CAATCTG--AAAAACTG-TGAAAAAGAAATAATACAAAT-TCGTTTCTGAAatggtt
gi|133326 : G-AAA-A-CCAATA-TATAAAACTGTATAACAAAGACGA-----------------AAC-TTTTAGAAAAGTTTGACTTGAAATTCGAAGCACA------ACTGTGCC--------TGAAGACC-AAAAGTAAA-CAATCTG--AAAAACTG-TGAAAAAGAAATAATACAAAT-TTGTTTCTGAAatggtt
gi|133327 : G-AAA-A-CCAATA-TATAAAACTGTATACCAAA-----------AC-CGT-----AAC-TTTTAGAAAAGTGTG-CCTGAA--------------------------------------GACC-AAAAATAAA-CAATCTG--AAAAACTG-TGAAAAAGAAATGACACAAAA-TCATTTCTGAAatggtt
gi|133328 : AT-TTTTCGTAAA-TGCAAGTTGAGATTCGGAGCATATGAAAAAC-ATGC-----------GAGACC-AAAAAAAAAACAATTTG--AAAAACTG-TCTAATACAAAAGAT-CAAAG-TCATTTTTGAAattgtt
gi|133329 : ------ACTTNNNN--------N-NNNNNC-AAAAGTAAA-CAATCTG--AAAAACTG-TGAAATATAAATGACACAAAA-TTGTTTCTGAAattgtt
gi|133330 : --------C-AAGATTGAAAAATAAA-CAATCTG---AAAACTGTTAAAAAAGAAATGATACAAAG-TCGTTgtagtt
blockSeqs : A T C T C C GGA G CACGTGTGAGTGGTTA A TAAGAT G TAA CTGTATCAC AAATTGCTTTAACGCAAATA T TTGT G A T G A T TGA A TGAAAA CATAAGTGAC G A AA T T
blockSeqs : . . . . . C . . . . . . . . GAATTGCTGAAA . . G . . . . T CGA . . CAC . . A . .
blockSeqs : . . . . . T . . . . . . . . A . . G . . . . T TGA . . CAC . . . . .
blockSeqs : . . . . . C . . . . . . . . A . . A . . . . T CAA . . CAC . . . . .
blockSeqs : . . . . . A . . . . . . . . A . . A . . . . T CTA . . TAC . . . . .
blockSeqs : . . . . . T . . . . . . . . A . . A . . . . T CTA . . CAC . . . . .
blockSeqs : . . . . . C . . . . . . . . A . . G . . . . T TGA . . CTG . . . . .
blockSeqs : . . . . . . . . . . . . . . T . . A . . . . T CGA . . CTG . . . . .
blockSeqs : . . . . . . . . . . . T . . . . . . . T AT . . CTG . . . . .
blockSeqs : . . . . . . . . . . . A . . . . . . . T CA . . CC . . . . .
blockSeqs : . . . . . . . A . . . . . . . . . . NN . . . . .
blockSeqs : . . A . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : AATTGACACTGCGAATGTCAATCATTG-TCCTAAACA-TGACCAAGATACATA-A-GCTCCGCCTTTATCGGTTGTAAGCCAATCAGATTGCAGATGATATCA-GAAACTTT---C-AACGTGATTA----------------CACACGAGAGGTGTTACAAT-CAAATTCGACACAGC------ACGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTATCGGTTTTC----ATATAGTTTACCGCCGAAACAACGATAAAG-AAA-A-TCAATA-TATAAAACTGTATACCAAAGACGATCTTTAACACGTCCGA-AAC-TTTTAGAAAAGTGCGACTTGAAATTCGAAGCACA------ACTGTGCC--------C-AAGACC-AAAAATAAA-CAATCTG--AAAAACTG-TGAAAAAGAAATGACACAAAA-TCGTTTCTGAA
finalCons : AATTGACACTGCGAATGTCAATCATTG-TCCTAAACA-TGACCAAGATACATA-A-GCTCCGCCTTTATCGGTTGTAAGCCAATCAGATTGCAGATGATATCA-GAAACTTT---C-AACGTGATTA----------------CACACGAGAGGTGTTACAAT-CAAATTCGACACAGC------ACGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTATCGGTTTTC----ATATAGTTTACCGCCGAAACAACGATAAAG-AAA-A-TCAATA-TATAAAACTGTATACCAAAGACGATCTTTAACACGTCCGA-AAC-TTTTAGAAAAGTGCGACTTGAAATTCGAAGCACA------ACTGTGCC--------C-AAGACC-AAAAATAAA-CAATCTG--AAAAACTG-TGAAAAAGAAATGACACAAAA-TCGTTTCTGAA
Alignments
lowQualScore : 2222222222222222 111111111 3333333333333333333333333333333 22222222222
lowQualScore : 3 0 3 2 2 3 1 0 777 4 0 4444444444444444 3 999999 3 555 333333333 3333333333333333333333333333333 3 6666 1 2 2 2 2 0 2 9999 2 666666 88888888888 2 2 55 2 2
lowQualScore : . . . . . . . . ... . . ................ . ...... . ... ......... ............................... . .... . . . . . . . .... . ...... ........... . . .. . .
lowQualScore : 6 5 3 9 9 6 9 9 888 4 9 1111111111111111 6 666666 3 888 333333333 5555555555555555555555555555555 1 5555 8 7 7 7 7 9 4 3333 5 444444 88888888888 1 1 00 1 1
consensus : AATTGACACTGCGAATGTCAATCATTG-TCCTAAACA-TGACCAAGATACATA-A-GCTCCGCCTTTATCGGTTGTAAGCCAATCAGATTGCAGATGATATCA-GAAACTTT---C-AACGTGATTA----------------CACACGAGAGGTGTTACAAT-CAAATTCGACACAGC------ACGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTATCGGTTTTC----ATATAGTTTACCGCCGAAACAACGATAAAG-AAA-A-TCAATA-TATAAAACTGTATACCAAAGACGATCTTTAACACGTCCGA-AAC-TTTTAGAAAAGTGCGACTTGAAATTCGAAGCACA------ACTGTGCC--------C-AAGACC-AAAAATAAA-CAATCTG--AAAAACTG-TGAAAAAGAAATGACACAAAA-TCGTTTCTGAA
Reference ( family-733 ) : AATTGACACTGCGAATGTCAATCATTG-TCCTAAACA-TGACCAAGATACATA-A-GCTCCGCCTTTATCGGTTGTAAGCCAATCAGATTGCAGATGATATCA-GAAACTTT---C-AACGTGATTA----------------CACACGAGAGGTGTTACAAT-CAAATTCGACACAGC------ACGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTATCGGTTTTC----ATATAGTTTACCGCCGAAACAACGATAAAG-AAA-A-TCAATA-TATAAAACTGTATACCAAAGACGATCTTTAACACGTCCGA-AAC-TTTTAGAAAAGTGCGACTTGAAATTCGAAGCACA------ACTGTGCC--------C-AAGACC-AAAAATAAA-CAATCTG--AAAAACTG-TGAAAAAGAAATGACACAAAA-TCGTTTCTGAA
gi|133306 : AATTGACACTGTGAATGTCAATCATTG-TCCTAAACA-TGACCAAGATACATA-A-GCTCCGCCTTTATCGGTTGTAAGCCAATCAGATTGCAGATGATATCA-GAAACTGT---C-AGCGTGATTA----------------CACACGAGAGGTGTTACTAT-CAAATTCGACACAGC------ACGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTATCGGTTTTC----ATATAGTTTACCACCGAAACAACGATAAAG-AAA-A-TTAATA-TATAAAACTGTATACCAAATATGATCTTTAACACGTCCGA-AAT-TTTTAGAAATGTGCGACTTGAAATTCGAAGCACA------ACTGTGCCA-------C-AAGACC-AAAAATAAA-CAATCTG--AAAAACTG-CGAAAAAGATATGACACAAAA-TCGTTTCTGAA
gi|133307 : AATTGACACTGTGACTGTCAATCATTG-TCTTAAATA-TGACCAAGATACATACATACTCCACCTTTATCGGTTGTAAGCCAATCAGATTGCAGATGATATCA-GAAACTTT---C-AACATGATTA----------------CACATGAGAGGTGTTACAAT-CAAATTCGACACAGC------AAGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCATATCGGTTTTC----ATATAGTTTACCGCTGAAACAACGATAAAG-AAA-A-TCAATG-TATAAAACTGTCTACCAAATAT-ATCTTTAACACGTCTGA-AAT-TTTTAGAAAAGTGCGACTTGAAATTCGAAGCACA------ACTGTGCCA-------C-AAGACC-AAAAATAAA-CAATCTG--AAAAACTG-CGAAAAAGATATGATAAAAAA-TCGTTTCTGAA
gi|133308 : AATTGACACTGCAAATGTAAATCATTG-TCCTAAACA-TGACCAAGATACATA-A-GCTCCGCTTTTGTCGATTGTAAGCCAATCAGATTACAGATGATATCACAAAACTTT---C-AACTTGATTG----------------CACACGAGTGGTGTGACAAT-CAAATTCGACACAGC------ACGAC-TA---AT---------TGGCAT-----------A-------------------TATTTCATGG-TCTTAT-GGTTTTC----ATATAGTTTACCGCCGAAACAACGATAAAG-AAA-A-TCAATA-TATAAAAATGTATAATGAAGACGATCTTTAACACGTCCGA-AAC-TTTTAGAAAAGTGCAACTTGAAATTCGAAGCACA------ACTGTGTCA-------C-AAGACC-AAAAATAAA-CAATTTG--AAAAACTG-TGAAATAGAAATGACACAAAA-TCGTTTCTGAAatagtt
gi|133309 : AATTTACACTGCGAATGTCAATCATTG-TCCTAAACA-TGACGTAGATACATA-A-GCTCCGCCTTTATTGGTTGTAAGCCAATCAGATTGCAGATAATATCA-GAAATTTT---C-AACGTGAATA----------------CACACGAGAGGCGTTACAAT-CAAATTCGACCCTGC------ACGAC-TT---AT---------TGGCAT-----------A-------------------TATATCGTAC-TCTTATCGGTTTTC----ATATAGTTTACCGCCGAAACAACGATAAAG-AAA-A-TCAATA-TATAAAACTGTAAACCAAAGAAGATCTTTAACACGTCTGA-AAC-TTTTAGAAAAGTGCGACTTGAAGTTCAAAGCACA------ACTGTGCCATAAGTGAC-AAGACC-AAAAATAAA-CAATCTG--AAAAACTT-TGAAAAAGAAATGACACAAAA-TTGTTTCTGAAatagtt
gi|133310 : AATTGACACTGCGAATGTCAATCATTG-TTCTAAACA-TTACCAAGATACATA-A-GCTCCGCCTTTATTGGTTGTAAGCCAATCAGATTGCAGATGATA----GAAA-------------TGATTT----------------CACACGGGAGGTGTTACAAT-CAAATTAGACACAGC------ACGAC-TATAAAT---------TGGCAT-----------A-------------------TATCTCGTAG-TTGTATCGGTTTTC----ATATAGTTTACCACCGAAACAAAGGTAAAG-AAA-A-TTAATA-TATAAAACTGTATACCAAAGATGATCTTTAACACGTCCAA-AAC-TTTTAAAGAAGTGCGACTTGAAATTCGAAGCACA------ATTGTGCCA-------C-AAGACC--AAAATAAA-CAATCTG--AAAAATTG-TGAAAAAGAAATGACACAAAA-TCATTTCTGAAatggtt
gi|133311 : AATTGACACTGCGAATGTCAATCATTG-TCCTAAACA-TGACCAAGATATATA-A-GCTCCGCCTTTATCAGTTGTAAGCCAATCAGATTGCAGAAAATATCA-GAAACTTT---C-AACGTGATTA----------------CAC----------------T-CAAATTCAACACAGC------ACGAC-CA---AT---------TGGCAT-----------AAATTGCTTTAACGCAAATATATTTCATAG-TCTTATCAGTTTTC----ATTT-GTTTACCACCGAAACAACAATAAAG-AAA-A-TCTATAATATAAAACTCTATATCAAAACCGATCTTTAACACGTCCTA-AAC-TTTTAGAAAAGTGTGATTTGAAATTCTAAGCACA------ACTGTGCTA-------C-AAGACC-AAAAATAAA-CAATCTG--TAAAACTG-CGAAAAAGAAATTACACAAAA-TCATTTCTGAAattgtt
gi|133312 : AATTGACACTGAGAATGTCAATCATTA-CCGTAAACA-TAACCCAAATACAAA-A-GCTCCACCCTTATCGATTGAAAGCCAGTTAGATTGCAGATGATAACA-GGTAATCT---CGAAAGTGATTACACGTGTGAGTGGTTACACACAAGAAGTGA-ACATTACAAACTCCACGCAGC----------C-TA---ATCTGTATCACTGAAAT-----------A-------------------TATCTCGTAG-TCTT--CGGTTTAC----ATATATTTTACCACTGAAGCAATGATAAAG-AAA-AGTCAATA-T----AACTGTATATCAAAGACGATCTTCAACAAGGC--ATATT-TTTTAGATAAATCTGACTTGAAATTC----------------------------------------AAAATAAA-GAAACTGAAAAAAAATG-TG-AAAAGACTTGGCGCAAAG-TCATTTCTGAAattgtt
gi|133313 : AATTGACACTGCAAATGTCAATCATGA-CCGTAAACA-TGAACCAGATACATA-A-ACTCCGCCTCTATTGGTTGTAAGCCAATCAGATTACAGATGGTATCA-GAAATCACGGAC-AACATGATTA----------------CACACAAGATGTTTTATAA---ACATT--ACATGGCTAAGATATGATGTA---AT---------TGGCATGAATTGCTGAAA-------------------TATCTTAAAGTTTTTACAGGTTCTC----ACAT-GTTatcgtt
gi|133314 : AATTGACACTGCGAATGTCAATCATTG-TCCTAAACATTGACCAAGATACATA-A-GCTCCGCCTTT
gi|133315 : ATGTCTGTCATTGATTGTAAACA-TGATCAAGAAACTTT-G-GCTCCATCCATATCAGTTGTCAGTCAGTCATGTTAC
gi|133316 : atacagtgCTATGAATGTCAATCATTG-TCATAAACA-TAACCAAGATACATA-A-GCTCCACCCTTATCGGT
gi|133317 : CA-TGCCCAAGATACATA-A-GCTCCACCTTTAACGGTTGTAAGCCAATCAGATTGCAGATTATATTA-GACACATT---C-AACATGATTA----------------CACACAAGAGGTGTTATAAT-CAAATTCGACACAGC------ACGAC-TA---AC---------TGGCAT-----------T-------------------TATCTCGTAA-TCTTATTGGTTTTC----ATATAGTTTTCCGCCGAAACAACCATAAGG-AAA-A-TCAATA-TATAAAACTGTACACCAAAGACAATCTTTAACATGTGCTA-AAC-TTTTAGAAAAGTGTGACTTAATATTCGAAGTACA------ACTGTGCC--------C-AAGACC-AAAAATAAA-CAATCTG--------------AAAAGAAATGACAC-AAA-TCGTTTCTGAA
gi|133318 : AAGATA-ATA-----TCCGCCCTTATGAGTAGAAAGCCAATCAGATTTAAGACGATATCA-GAattgtt
gi|133319 : ATA-A-ACTCCTCCCTTATCAGTAGTAAGCCAATCAGATTAAAGATGGTATCA-GAA
gi|133320 : TGATTA----------------CACACGAAAGGTGTTACAAT-TAAATTCGACACAGC------ACGAC-TA---AT---------TGGCAC-----------T-------------------TACCTCGTAG-TCTTATCGGTTTTC----ATATAGTTT------------ACGATAAAGAAAA-A-TCAATA-TATAAAACTGTATACCAAAGACGATCCTTAACACGTCTGA-AAC-TTTTAAAAAAGTGTGACTTGAAATTCGAAGCACA---------------------------ACC-AAAAATAAA-CAATCTG--AAAAACTG-TGAAATAGAAATGACACAAAA-TCGTTTCTGAA
gi|133321 : TGACTA----------------CACACGAGATGTGTTACAAT-CAAATTCGACACAAT------ACAAC-TA---AC---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTGTCAGTTTTC----ATATAG--TA----------AACGATAAAG-AAA-A-TCAATA----AAAAatagtt
gi|133321 : TAAAAATC-AAGCACA------ACTGTGCCA-------C-AAGACC-AAAAATAAA-CAATCTG--AAAAACTG-TGAAATAGAAATGACACAAAA-TTGTTTCTGAAtcaagcacaactgtgccacaagaccaaaaataaacaatctgaaaaactgtgaaatagaaatgacacaaaattgtttctgaaatagtt
gi|133322 : tgactacacacgagatgtgttacaatcaaattcgacacaatacaactaactggcatatatctcgtagtcttgtcagttttcatatagtaaacgataaagaaaatcaaATTTGCCA-ATC------AAGAC-TA---AT---------TGGCAT-----------A-------------------TATCTCGTAG-TCTTATCGGTTTTCTTGTATATAatagtt
gi|133322 : TGTATATAAAAGACGATCTTGAACACGTCCGA-AAC-TTTAAGAAAAGTGTGACTTAAAATTCGAAGCA-A------TCTG---------------------AAAA-------------------ACTG-TGAAAAAGAAATGACACAAAA-TTGTTTCTGAAaaagacgatcttgaacacgtccgaaactttaagaaaagtgtgacttaaaattcgaagcaatctgaaaaactgtgaaaaagaaatgacacaaaattgtttctgaaat
gi|133323 : atttgccaatcaagactaattggcatatatctcgtagtcttatcggttttctAT-----------A-------------------TGTCTCGTAG-TTTTTTCGGTTTAC----ATATACTTTGCCAACAACGCAAC-ATAAAG-AAATG-TCAGTA-T----AACTGTATATCAAAAACGATATTTAACAAAGCC-A-AACATTTTAGAAAA---------AAAATCCGA-----A------ATTCT----------------------AAAT-AA-CAAACTGA-AAAAATTG-TG-GAAAGTCATGACGCAAAG-TTGTTTCat
gi|133324 : G-AAA-A-CCAATA-TATAAAACTGTATAACAAAGACGA-----------------AAC-TTTTAGAAAAGTGCGACTTGAAATTCGAAGCACA------ACTGTGCC--------TGAAGACC-AAAAGTTAA-CAATCTG--AAAAACTG-TGAAAAAGAAATAATACAAAATTCGTTTCTGAAagtatctgaaatagtt
gi|133325 : G-AAA-A-CCAATA-TATAAAACTGTATAACAAAGACGA-----------------AAC-TTTTAGAAAAGTTCGACTTGAAATTCGAAGCACA------ACTGTGCC--------TGAAGATC-AAAAGTAAA-CAATCTG--AAAAACTG-TGAAAAAGAAATAATACAAAT-TCGTTTCTGAAatggtt
gi|133326 : G-AAA-A-CCAATA-TATAAAACTGTATAACAAAGACGA-----------------AAC-TTTTAGAAAAGTTTGACTTGAAATTCGAAGCACA------ACTGTGCC--------TGAAGACC-AAAAGTAAA-CAATCTG--AAAAACTG-TGAAAAAGAAATAATACAAAT-TTGTTTCTGAAatggtt
gi|133327 : G-AAA-A-CCAATA-TATAAAACTGTATACCAAA-----------AC-CGT-----AAC-TTTTAGAAAAGTGTG-CCTGAA--------------------------------------GACC-AAAAATAAA-CAATCTG--AAAAACTG-TGAAAAAGAAATGACACAAAA-TCATTTCTGAAatggtt
gi|133328 : AT-TTTTCGTAAA-TGCAAGTTGAGATTCGGAGCATATGAAAAAC-ATGC-----------GAGACC-AAAAAAAAAACAATTTG--AAAAACTG-TCTAATACAAAAGAT-CAAAG-TCATTTTTGAAattgtt
gi|133329 : ------ACTTNNNN--------N-NNNNNC-AAAAGTAAA-CAATCTG--AAAAACTG-TGAAATATAAATGACACAAAA-TTGTTTCTGAAattgtt
gi|133330 : --------C-AAGATTGAAAAATAAA-CAATCTG---AAAACTGTTAAAAAAGAAATGATACAAAG-TCGTTgtagtt