lowQualScore                  :    1                               333333333333333                                                                             1      1111                                                                 11111111111111111111   22222222222               
lowQualScore                  :    2          5        6  1 1 44 1 444444444444444              333     77777777  3       1     1 44444                   1    3 3    4444   2                        5 1 3    0   333   1   99999999999   66666666666666666666   33333333333               
lowQualScore                  :    .          .        .  . . .. . ...............              ...     ........  .       .     . .....                   .    . .    ....   .                        . . .    .   ...   .   ...........   ....................   ...........               
lowQualScore                  :    0          1        6  7 7 11 7 777777777777777              000     22222222  6       0     8 55555                   1    0 6    5555   0                        5 8 1    9   222   8   00000000000   11111111111111111111   22222222222               
consensus                     :  AAAGTACAATTTTGAGTTACTTTTT-G-C--C-C----------C---CAACACCAATTTCTT---CAATA------AGTAGTTTTAAAACAATA-T-----TATTTGACATTGTCAACGACGAATTA-GACCAGAAATTCTGAGTTGCAGGCAGCTGCATTTGTGC-AAGAAGAAAC---TAG-TTT-----------GTT------------C-------AGCC----------ACATTTGATACAATA
Reference ( gi|115458 )       :  AATGTACAATTTTGAGTTACTTCTT-G-C--C-C----------A---GAACACCAATTTCTT---CAATA------AATAGTTTTAAAACAATA-T-----TATTTAACATTGTCAACAACGAATGA-GACCTGACATTCTGAGTTGCAGGCAGCTGCATTTGTAC-AGGAAGAAAC---TAG-TTT-----------GTT------------C-------AGTC----------ACATTTGATACAATA
gi|115466                     :  AAGGTACAATTTTGAGTTAATTCT--G-C--C-C----------T---AAACACCAATTTCTT---CAATA------AATAGTTTTAAAATAATA-T-----TATTTAACATTGTCAACATTGAATTA-AACCTGAAATTCCGAGATGCAGACAGCTGCATTTGTAT-AGGAAGATAC---TAG-TTT-----------GTT------------C-------AGTC----------ACA-TTAATACAATA
gi|115463                     :  AATGTACAATTTTG-----CTCCCT-A-C--------------------AACACCAATTTTTT---CAATA------AGTAGTTTTAAAACAATA-T-----TATTTAACATTGTCAACAACAAATAA-GACCAGAAATTCTGAGTTGCAGGCAGCTTCATTTGCGC-AAGAAGAAAC---TAG-ATT-----------GTT------------C-------AGTC----------ACATTTGCTACAATA
gi|115459                     : aAAAGTACAATTTTGAGTTACTTTTT-G-C--C-C----------C---CAACACCAATTTCTT---CAGTT------AGTAGTTTTAAAACAATA-T-----TATATAATTTTGTCATCAACAAATTA-GACCAGAAGTTCTGAGCTGCAGGCAGCTGCATTTGTGC-AAGAAGAAAC---TAG-TTG-----------GTT------------C-------AGTC----------ATATTTGCTACAATA
gi|115462                     :  AAAGTACAATTTTGAGTTACTATTT-G-C--C-C----------C---AAACAA-AATTTCTT---CAATA------AATAGGTTTTAAACAATA-T-----TATTTAACATTGTCAACAATAATTTA-GACGCGAAATTTTGAGTTGCAGGCAGCTGCATTTGTGA-AAGAAGAAAA---TAG-TTT-----------GTT------------C-------AGTC----------ACATTTGATACAATA
gi|115460                     :  AAAGTACAATTTTGAGTTACTT-TT-G-CTCC-C----------A---G--CACCCATTTCTT---CAATA------AGTAGTTTTAAAACAATA-T-----AATTTTACATTGTCAACAACAAATTA-GACCAGAAAGTATGAGTTGCAGGCAGCTGAATTTGTGC-AAAAAGAAAC---TTGATTT-----------GTT------------C-------AGCC----------ACATTTGATACACTA
gi|115470                     :  AATGTACAATTTTGAGTTACTTCTT-G-C--C-CCCCCCCCCCCACCCGA-CACCAATTTCTT---TATTA------AATAGTTTTAAAACAATA-T-----TATTTAACATTGTCAACAATGAATTA-GACCAGAAATTCTGAG---------------TTTGTAC-AGGAAGAAAA---TAG-TTT-----------GTT------------C-------TGTC----------ACATTTGATACAATA
gi|115464                     :  AAAGTACAATTTTGAGTAACTATGT-G-C--C-C----------C---CAATACCAATTTTTT---CAATACCGGTAAGTATTTTTAAAACAATA-T-----TAGTTGACATTGTCAACGACGAATTA-GACACGAAAATCTTAGTTGCAAGCAGCTGCATTTGTGC-AATATGAAAC---TAG-TTT-----------GTT------------C-------AGCA----------ACATTTGATACAATA
gi|115468                     :  AATGTACAGTATTGAGTTACGTTTT-G-C--C-C----------C---CAGCACCAGTTTCTT---CAATA------TGTAGATTTAAAACAATAGTACATGTATTTAACATTATCAATGAAGAATTG-GACCAGAAATTAGGAGTTTCAAGCAGCTGCATTTATGC-AAGAA-AAAC---TAG-CTT-----------GTT------------C-------AGCC----------ACATTTGATACAATA
gi|115465                     : aAAAGTACAATTTTAAGTAACTTTTT-G-A--C-C----------C---CAACATCTATTTCTT---TAATA------AGTATTTTTAAAACAATA-T-----CATTTGACATTGTCAATGAAGAATTA-GACAAGAAAATATGAGTTTGAGGCAGCTGCA-TTGTGC-AAGAAGAAAC---TAG-TTT-----------TTT------------C-------AGCA----------ACATTTGACAC
gi|115467                     :  AAAGTACAATTTTTGGTGACT-CT-------------------------AACAACA-TTTCTT---CAATA------AGTACTTTTAAACCAATA-T-----TATTTGACATTGTCAACAACGAATTA-GACAAGAAATTCTGAGTTACAGGCAGCTGCATTTGTAC-AAGAAGCAAC---TAG-TTT-----------GCT------------T-------A
gi|115472                     :  AAAGTACAATTTC-AGTTAATT-TT-A-CA-C-T----------T---CAACACCCATTACTT---CATTA------AGTATTTTGAAACCAATA-T-----TATTTGACATTGTCAACGACGAATTACGACACAACATTTTGACTTGCAGGCAGCTGCATTTGTGC-AAGAAGCAGC---T-G-TTC-----------ATTTAAGAGTTGAGGC-------AGCA----------ACATTTGATACAAagagttgcaggtagcaacatttgatcaaata
gi|115471                     :  AAAGTACAGTTTTTAGTTACTTTTT-G-C--C-C----------C---TAACACCCATTTCTT---CAATC------CATATTTTTAAATCAATA-C-----TATTTGACAGAGTCAACGATTAATTA-GACCAAAAGTTACGACTTGCAGGCAGCAACATTTGTGC-TACAAACAAC---TAG-TTT-----------GTT------------CATTTAAAAGTTGCAGGCAGCAACATTTGATACAATA
gi|115473                     :  AAAGTACAATTTGGAGTTATTTTTTTG-C--CTC----------A-----ACACCATTTTTTTTTTCAATT------ACTAGTCTTAAAACAATA-T-----CATTTAACGTT--CAACTACGAATTT-GACCAGAAATTAGGAGTTGCAGGCAGCTTCATTTGTGT-AAAGAAAAAC---TAG-TTT-----------GTT------------
gi|115474                     :  AAAGTACAATTTTTAGTTACATTTT-G-C--C-C----------C---TAACACCCATTTCTT---AAATC------CATATTTTTAAATCAATA-C-----TATTTGACATAGTCAACGATTAATTATAACCAAAAGTTACGACTTGCAGGCAGCAACAGTTGTGC-TACAAACAAC---TAG-TTTTTCATTTAAAAGTTGCAGG-------C-------AGCA----------ACATTTGATACAATA
gi|115476                     :  AAAGTACAATGTTTACTTACTTTTT-G-C--C-C----------A---AAACACCCATTTATT---CAATA------------CTTA---------------TATTTAACAGT-TAAACAATGTATTA-GACCAGAATTTCTCAGTTGCAGGCAGCTGCATTTGC----GGAAGTAGCATTTAG-TT
gi|115475                     :  AAAGTACAGTTTTTAGTTACTTTTT-G-C--C-C----------C---AAACACCAATTTATT---TTATA------AGTAGTTTTAAAAC------------ATTTAGCAATATCA
gi|115480                     :     GTACAATTTTTAGTTACTTTTT-ATC--C-C----------A-----ACATCAATTTCTT---CAATA------ATCATTTTTAAACCAATA-T-----TATTTGGCATTGTCAGCGACAAATTA-GACCAGAAAATTTGAGTTGGAGGCAGCTGCATTTGTGC-AAGAAGCAAC---TAG-TTT-----------GTT------------C-------A
gi|115478                     :    aGTACACTTTT-AGTTGCTTTTC-G-T--C-C--------------TAACAC----------------------------TCCTAAACCAATA-T-----TATCTGACATTGTCAACGAAGAATTA-GACCAGAAATTCTGAGTTGCAGGCAACAACATTTGTGC-AAGAAGCAAC---AAG-TTT-----------GTT------------C-------A
gi|115477                     :   aaGCACAATTTCAAGTGACTTTTT-G-C--C-C----------C---AAACACCAATTTCTT---CAATA------AGTA
gi|115479                     :   agaTACAATTTTTGGTTACT-----G-T--------------------AACAACA-TTTCTT---CAATA------AGTATTTCTAAACAAATA-T-----TATTTGACATTGTACACAATTAATTA-G--------------GTCGCAGGCAGCTGCATTTGTGC-AAGAAGCAAC---TTG-TTT-----------GTT------------TTAG----AGTTGCAGATAGCAACATTTGTTACAATAcagccaaacctgtattatgcagcaacttaagtaaaagagcaaaaatgacctctaaagacaggtggctgc
gi|115461                     :    aaaACAATTTTGAGTTACTTTTT-G-C--C-C----------C---CAACACCAGTTTCTT---CAATA------AGTAGTTTTAAAACAATA-T-----AATTTGACATTGTCAACAATGAATAA-AA----A-ATCATGAATTGCAGGCAGCTGCATTTGTGC-AAGAAGAAAC---TAG-ATT-----------GTT------------C-------AGTG----------ACATTTGATACAATA
gi|115469                     :  aaaccACAATTTTTAGTTACTTTTA-G-C--C-A----------C---CAACACCCATTTCTT---CAGTA------AGTATTTTCAAACCAATA-T-----TGTTTGACATTGTCAACGATGAGTGA-GACCAGAAATTTTGAGCTGCGGGCAGCTACGTTTATGCAAGAAAGCAAC---TGG-TTT-----------GTT------------C-------A
gi|115481                     :                 aaagaTTTTT-G-C--C-C----------C---CAACACCAATTTCTT---------------AT--TTTTAAAACAATA-T-----TATTTGACATTGTCAACAAAAAATTA-GACAAGAAAATCTGAGTTGCAGGCAGCTGCATTTGTGC-AAGAAGAAAC---TGG-TTT-----------GTT------------C-------AGCA----------ACATTTGAAACAGTAtttaagagctgcaggcagaaacattttatacaata
gi|115482                     :                                                                                                            TAATAATGTCATCAACAAATTC-GACCAGACATTCTGAGTTACAGGCAGCTGCATTTGTGC-AAAAAGAAAC---TAG-TTT-----------GTT------------C-------AGTC----------ACATTTCATACA





Alignments
lowQualScore                  :                                           1111111111111                                                                                                                                                       44444444444444444           11111111111               
lowQualScore                  :              1          5          0  1   4444444444444              222     444444    3       0     44444 1                 0 0      3   1        1                             1   0      1   88888888888   66666666666666666 6666666   11111111111               
lowQualScore                  :              .          .          .  .   .............              ...     ......    .       .     ..... .                 . .      .   .        .                             .   .      .   ...........   ................. .......   ...........               
lowQualScore                  :              8          1          8  7   9999999999999              999     888888    0       6     55555 8                 1 6      5   7        5                             7   4      7   66666666666   66666666666666666 2222222   99999999999               
consensus                     :           AAA-GTACAATTTTGAGTTACTTTTTGC-CCCC------------AACACCAATTTCTT---CAATA------AGTAGTTTTAAAACAATA-----T-TATTTGACATTGTCAACGACGAATTA-GAC-CAGAAATTCTGAGTTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTAG-TTT-----------GTT-----------------C-------AGCN----------ACATTTGATACAATA
Reference ( family-726 )      :           AAA-GTACAATTTTGAGTTACTTTTTGC-CCCC------------AACACCAATTTCTT---CAATA------AGTAGTTTTAAAACAATA-----T-TATTTGACATTGTCAACGACGAATTA-GAC-CAGAAATTCTGAGTTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTAG-TTT-----------GTT-----------------C-------AGCC----------ACATTTGATACAATA
gi|115458                     :           AAT-GTACAATTTTGAGTTACTTCTTGC-CCAG------------AACACCAATTTCTT---CAATA------AATAGTTTTAAAACAATA-----T-TATTTAACATTGTCAACAACGAATGA-GAC-CTGACATTCTGAGTTGCAGGCAGCTGCATTTGTACAGG-AAGAAACTAG-TTT-----------GTT-----------------C-------AGTC----------ACATTTGATACAATA
gi|115459                     :           AAA-GTACAATTTTGAGTTACTTTTTGC-CCCC------------AACACCAATTTCTT---CAGTT------AGTAGTTTTAAAACAATA-----T-TATATAATTTTGTCATCAACAAATTA-GAC-CAGAAGTTCTGAGCTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTAG-TTG-----------GTT-----------------C-------AGTC----------ATATTTGCTACAATA
gi|115460                     :           AAA-GTACAATTTTGAGTTACTTTT-GC-TCCC------------AGCACCCATTTCTT---CAATA------AGTAGTTTTAAAACAATA-----T-AATTTTACATTGTCAACAACAAATTA-GAC-CAGAAAGTATGAGTTGCAGGCAGCTGAATTTGTGCAAA-AAGAAACTTGATTT-----------GTT-----------------C-------AGCC----------ACATTTGATACACTA
gi|115461                     :           AAA-CCACAATTTTGAGTTACTTTTTGC-CCCC------------AACACCAGTTTCTT---CAATA------AGTAGTTTTAAAACAATA-----T-AATTTGACATTGTCAACAATGAA-TA------AAAAATCATGAATTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTAG-ATT-----------GTT-----------------C-------AGTG----------ACATTTGATACAATA
gi|115462                     :           AAA-GTACAATTTTGAGTTACTATTTGC-CCCA------------AACAA-AATTTCTT---CAATA------AATAGGTTTTAAACAATA-----T-TATTTAACATTGTCAACAATAATTTA-GAC-GCGAAATTTTGAGTTGCAGGCAGCTGCATTTGTGAAAG-AAGAAAATAG-TTT-----------GTT-----------------C-------AGTC----------ACATTTGATACAATA
gi|115463                     :                                 TTTTGC-TCCCTAC---------AACACCAATTTTTT---CAATA------AGTAGTTTTAAAACAATA-----T-TATTTAACATTGTCAACAACAAATAA-GAC-CAGAAATTCTGAGTTGCAGGCAGCTTCATTTGCGCAAG-AAGAAACTAG-ATT-----------GTT-----------------C-------AGTC----------ACATTTGCTACAATA
gi|115464                     : aaatgtacaaAAA-GTACAATTTTGAGTAACTATGTGC-CCCC------------AATACCAATTTTTT---CAATACCGGTAAGTATTTTTAAAACAATA-----T-TAGTTGACATTGTCAACGACGAATTA-GAC-ACGAAAATCTTAGTTGCAAGCAGCTGCATTTGTGCAAT-ATGAAACTAG-TTT-----------GTT-----------------C-------AGCA----------ACATTTGATACAATA
gi|115465                     :           AAA-GTACAATTTTAAGTAACTTTTTGA-CCCC------------AACATCTATTTCTT---TAATA------AGTATTTTTAAAACAATA-----T-CATTTGACATTGTCAATGAAGAATTA-GAC-AAGAAAATATGAGTTTGAGGCAGCTGCA-TTGTGCAAG-AAGAAACTAG-TTT-----------TTT-----------------C-------AGCA----------ACATTTGACAC
gi|115466                     :           AAG-GTACAATTTTGAGTTAATTCT-GC-CCTA------------AACACCAATTTCTT---CAATA------AATAGTTTTAAAATAATA-----T-TATTTAACATTGTCAACATTGAATTA-AAC-CTGAAATTCCGAGATGCAGACAGCTGCATTTGTATAGG-AAGATACTAG-TTT-----------GTT-----------------C-------AGTC----------ACA-TTAATACAATA
gi|115467                     :           AAA-GTACAATTTTTGGTGACT---------CT------------AACAACA-TTTCTT---CAATA------AGTACTTTTAAACCAATA-----T-TATTTGACATTGTCAACAACGAATTA-GAC-AAGAAATTCTGAGTTACAGGCAGCTGCATTTGTACAAG-AAGCAACTAG-TTT-----------GCTTAAGAGTTGCAGG----T-------AGCA----------ACATTTGATCAAATA
gi|115468                     :           AAATGTACAGTATTGAGTTACGTTTTGC-CCCC------------AGCACCAGTTTCTT---CAATA------TGTAGATTTAAAACAATAGTACATGTATTTAACATTATCAATGAAGAATTG-GAC-CAGAAATTAGGAGTTTCAAGCAGCTGCATTTATGCAAG-AA-AAACTAG-CTT-----------GTT-----------------C-------AGCC----------ACATTTGATACAATA
gi|115469                     :           AAA-GAACAATTTTTAGTTACTTTTAGC-CACC------------AACACCCATTTCTT---CAGTA------AGTATTTTCAAACCAATA-----T-TGTTTGACATTGTCAACGATGAGTGA-GAC-CAGAAATTTTGAGCTGCGGGCAGCTACGTTTATGCAAGAAAGCAACTGG-TTT-----------GTT-----------------CATTTAAGAGCTGCAGGCAGAAACATTTTATACAATA
gi|115470                     :           AAT-GTACAATTTTGAGTTACTTCTTGC-CCCCCCCCCCCCACCCGACACCAATTTCTT---TATTA------AATAGTTTTAAAACAATA-----T-TATTTAACATTGTCAACAATGAATTA-GAC-CAGAAATTCTGAG---------------TTTGTACAGG-AAGAAAATAG-TTT-----------GTT-----------------C-------TGTC----------ACATTTGATACAATA
gi|115471                     :           AAA-GTACAGTTTTTAGTTACTTTTTGC-CCCT------------AACACCCATTTCTT---CAATC------CATATTTTTAAATCAATA-----C-TATTTGACAGAGTCAACGATTAATTA-GAC-CAAAAGTTACGACTTGCAGGCAGCAACATTTGTGCTAC-AAACAACTAG-TTT-----------GTTCATTTAAAAGTTGCAGGC-------AGCA----------ACATTTGATACAATA
gi|115472                     :           AAA-GTACAATTTC-AGTTAATTTT-ACACTTC------------AACACCCATTACTT---CATTA------AGTATTTTGAAACCAATA-----T-TATTTGACATTGTCAACGACGAATTACGACACA-ACATTTTGACTTGCAGGCAGCTGCATTTGTGCAAG-AAGCAGCT-G-TTC-----------ATTTAAGAGTTGAGG-----C-------AGCA----------ACATTTGATACAA
gi|115473                     :           AAA-GTACAATTTGGAGTTATTTTTTTG-CCTC------------AACACCATTTTTTTTTTCAATT------ACTAGTCTTAAAACAATA-----T-CATTTAACGTT--CAACTACGAATTT-GAC-CAGAAATTAGGAGTTGCAGGCAGCTTCATTTGTGTAAA-GAAAAACTAG-TTT-----------GTT-----------------
gi|115474                     :           AAA-GTACAATTTTTAGTTACATTTTGC-CCCT------------AACACCCATTTCTT---AAATC------CATATTTTTAAATCAATA-----C-TATTTGACATAGTCAACGATTAATTATAAC-CAAAAGTTACGACTTGCAGGCAGCAACAGTTGTGCTAC-AAACAACTAG-TTTTTCATTTAAAAGTTGCAGG------------C-------AGCA----------ACATTTGATACAATA
gi|115475                     :           AAA-GTACAGTTTTTAGTTACTTTTTGC-CCCA------------AACACCAATTTATT---TTATA------AGTAGTTTTAAAACA
gi|115476                     :           AAA-GTACAATGTTTACTTACTTTTTGC-CCAA------------AACACCCATTTATT---CAATA------------CTTA---------------TATTTAACAGT-TAAACAATGTATTA-GAC-CAGAATTTCTCAGTTGCAGGCAGCTGCATTTGCGGAAG-TAGCATTTAG-TTtttagcaatatca
gi|115477                     :           AGA-GCACAATTTCAAGTGACTTTTTGC-CCCA------------AACACCAATTTCTT---CAATA------AGTA
gi|115478                     :            AA-GTACACTTTT-AGTTGCTTTTCGT-CCT-------------AACAC----------------------------TCCTAAACCAATA-----T-TATCTGACATTGTCAACGAAGAATTA-GAC-CAGAAATTCTGAGTTGCAGGCAACAACATTTGTGCAAG-AAGCAACAAG-TTT-----------GTT-----------------C-------Acagccaaacctgtattatgcagcaacttaagtaaaagagcaaaaatgacctctaaagacaggtggctgc
gi|115479                     :            AA-ATACAATTTTTGGTTACTGT---------------------AACAACA-TTTCTT---CAATA------AGTATTTCTAAACAAATA-----T-TATTTGACATTGTACACAATTAATTA-G---------------GTCGCAGGCAGCTGCATTTGTGCAAG-AAGCAACTTG-TTT-----------GTTTTAGAGTTGCAGA----T-------AGCA----------ACATTTGTTACAATA
gi|115480                     :             A-GTACAATTTTTAGTTACTTTTTAT-CCC-------------AACATCAATTTCTT---CAATA------ATCATTTTTAAACCAATA-----T-TATTTGGCATTGTCAGCGACAAATTA-GAC-CAGAAAATTTGAGTTGGAGGCAGCTGCATTTGTGCAAG-AAGCAACTAG-TTT-----------GTT-----------------C-------A
gi|115481                     :                                TTTTTGC-CCCC------------AACACCAATTTCTT-----AT------------TTTTAAAACAATA-----T-TATTTGACATTGTCAACAAAAAATTA-GAC-AAGAAAATCTGAGTTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTGG-TTT-----------GTT-----------------C-------AGCA----------ACATTTGAAACAGTA
gi|115482                     :                                                                                                                       TGTCATCAACAAATTC-GAC-CAGACATTCTGAGTTACAGGCAGCTGCATTTGTGCAAA-AAGAAACTAG-TTT-----------GTT-----------------C-------AGTC----------ACATTTCATACA





Alignments
lowQualScore                  :                                           1111111111111                                                                                                                                                       44444444444444444           11111111111               
lowQualScore                  :              1          5          0  1   4444444444444              222     444444    3       0     44444 1                 0 0      3   1        1                             1   0      1   88888888888   66666666666666666 6666666   00000000000               
lowQualScore                  :              .          .          .  .   .............              ...     ......    .       .     ..... .                 . .      .   .        .                             .   .      .   ...........   ................. .......   ...........               
lowQualScore                  :              8          1          8  7   9999999999999              999     888888    0       6     55555 8                 1 6      5   7        5                             7   4      7   66666666666   66666666666666666 2222222   22222222222               
consensus                     :           AAA-GTACAATTTTGAGTTACTTTTTGC-CCCC------------AACACCAATTTCTT---CAATA------AGTAGTTTTAAAACAATA-----T-TATTTGACATTGTCAACGACGAATTA-GAC-CAGAAATTCTGAGTTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTAG-TTT-----------GTT-----------------C-------AGC----------NACATTTGATACAATA
Reference ( family-726 )      :           AAA-GTACAATTTTGAGTTACTTTTTGC-CCCC------------AACACCAATTTCTT---CAATA------AGTAGTTTTAAAACAATA-----T-TATTTGACATTGTCAACGACGAATTA-GAC-CAGAAATTCTGAGTTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTAG-TTT-----------GTT-----------------C-------AGC----------NACATTTGATACAATA
gi|115458                     :           AAT-GTACAATTTTGAGTTACTTCTTGC-CCAG------------AACACCAATTTCTT---CAATA------AATAGTTTTAAAACAATA-----T-TATTTAACATTGTCAACAACGAATGA-GAC-CTGACATTCTGAGTTGCAGGCAGCTGCATTTGTACAGG-AAGAAACTAG-TTT-----------GTT-----------------C-------AGT----------CACATTTGATACAATA
gi|115459                     :           AAA-GTACAATTTTGAGTTACTTTTTGC-CCCC------------AACACCAATTTCTT---CAGTT------AGTAGTTTTAAAACAATA-----T-TATATAATTTTGTCATCAACAAATTA-GAC-CAGAAGTTCTGAGCTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTAG-TTG-----------GTT-----------------C-------AGT----------CATATTTGCTACAATA
gi|115460                     :           AAA-GTACAATTTTGAGTTACTTTT-GC-TCCC------------AGCACCCATTTCTT---CAATA------AGTAGTTTTAAAACAATA-----T-AATTTTACATTGTCAACAACAAATTA-GAC-CAGAAAGTATGAGTTGCAGGCAGCTGAATTTGTGCAAA-AAGAAACTTGATTT-----------GTT-----------------C-------AGC----------CACATTTGATACACTA
gi|115461                     :           AAA-CCACAATTTTGAGTTACTTTTTGC-CCCC------------AACACCAGTTTCTT---CAATA------AGTAGTTTTAAAACAATA-----T-AATTTGACATTGTCAACAATGAA-TA------AAAAATCATGAATTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTAG-ATT-----------GTT-----------------C-------AGT----------GACATTTGATACAATA
gi|115462                     :           AAA-GTACAATTTTGAGTTACTATTTGC-CCCA------------AACAA-AATTTCTT---CAATA------AATAGGTTTTAAACAATA-----T-TATTTAACATTGTCAACAATAATTTA-GAC-GCGAAATTTTGAGTTGCAGGCAGCTGCATTTGTGAAAG-AAGAAAATAG-TTT-----------GTT-----------------C-------AGT----------CACATTTGATACAATA
gi|115463                     :                                 TTTTGC-TCCCTAC---------AACACCAATTTTTT---CAATA------AGTAGTTTTAAAACAATA-----T-TATTTAACATTGTCAACAACAAATAA-GAC-CAGAAATTCTGAGTTGCAGGCAGCTTCATTTGCGCAAG-AAGAAACTAG-ATT-----------GTT-----------------C-------AGT----------CACATTTGCTACAATA
gi|115464                     : aaatgtacaaAAA-GTACAATTTTGAGTAACTATGTGC-CCCC------------AATACCAATTTTTT---CAATACCGGTAAGTATTTTTAAAACAATA-----T-TAGTTGACATTGTCAACGACGAATTA-GAC-ACGAAAATCTTAGTTGCAAGCAGCTGCATTTGTGCAAT-ATGAAACTAG-TTT-----------GTT-----------------C-------AGC----------AACATTTGATACAATA
gi|115465                     :           AAA-GTACAATTTTAAGTAACTTTTTGA-CCCC------------AACATCTATTTCTT---TAATA------AGTATTTTTAAAACAATA-----T-CATTTGACATTGTCAATGAAGAATTA-GAC-AAGAAAATATGAGTTTGAGGCAGCTGCA-TTGTGCAAG-AAGAAACTAG-TTT-----------TTT-----------------C-------AGC----------AACATTTGACAC
gi|115466                     :           AAG-GTACAATTTTGAGTTAATTCT-GC-CCTA------------AACACCAATTTCTT---CAATA------AATAGTTTTAAAATAATA-----T-TATTTAACATTGTCAACATTGAATTA-AAC-CTGAAATTCCGAGATGCAGACAGCTGCATTTGTATAGG-AAGATACTAG-TTT-----------GTT-----------------C-------AGT----------CACA-TTAATACAATA
gi|115467                     :           AAA-GTACAATTTTTGGTGACT---------CT------------AACAACA-TTTCTT---CAATA------AGTACTTTTAAACCAATA-----T-TATTTGACATTGTCAACAACGAATTA-GAC-AAGAAATTCTGAGTTACAGGCAGCTGCATTTGTACAAG-AAGCAACTAG-TTT-----------GCTTAAGAGTTGCAGG----T-------AGC----------AACATTTGATCAAATA
gi|115468                     :           AAATGTACAGTATTGAGTTACGTTTTGC-CCCC------------AGCACCAGTTTCTT---CAATA------TGTAGATTTAAAACAATAGTACATGTATTTAACATTATCAATGAAGAATTG-GAC-CAGAAATTAGGAGTTTCAAGCAGCTGCATTTATGCAAG-AA-AAACTAG-CTT-----------GTT-----------------C-------AGC----------CACATTTGATACAATA
gi|115469                     :           AAA-GAACAATTTTTAGTTACTTTTAGC-CACC------------AACACCCATTTCTT---CAGTA------AGTATTTTCAAACCAATA-----T-TGTTTGACATTGTCAACGATGAGTGA-GAC-CAGAAATTTTGAGCTGCGGGCAGCTACGTTTATGCAAGAAAGCAACTGG-TTT-----------GTT-----------------CATTTAAGAGCTGCAGGCAGAAACATTTTATACAATA
gi|115470                     :           AAT-GTACAATTTTGAGTTACTTCTTGC-CCCCCCCCCCCCACCCGACACCAATTTCTT---TATTA------AATAGTTTTAAAACAATA-----T-TATTTAACATTGTCAACAATGAATTA-GAC-CAGAAATTCTGAG---------------TTTGTACAGG-AAGAAAATAG-TTT-----------GTT-----------------C-------TGT----------CACATTTGATACAATA
gi|115471                     :           AAA-GTACAGTTTTTAGTTACTTTTTGC-CCCT------------AACACCCATTTCTT---CAATC------CATATTTTTAAATCAATA-----C-TATTTGACAGAGTCAACGATTAATTA-GAC-CAAAAGTTACGACTTGCAGGCAGCAACATTTGTGCTAC-AAACAACTAG-TTT-----------GTTCATTTAAAAGTTGCAGGC-------AGC----------AACATTTGATACAATA
gi|115472                     :           AAA-GTACAATTTC-AGTTAATTTT-ACACTTC------------AACACCCATTACTT---CATTA------AGTATTTTGAAACCAATA-----T-TATTTGACATTGTCAACGACGAATTACGACACA-ACATTTTGACTTGCAGGCAGCTGCATTTGTGCAAG-AAGCAGCT-G-TTC-----------ATTTAAGAGTTGAGG-----C-------AGC----------AACATTTGATACAA
gi|115473                     :           AAA-GTACAATTTGGAGTTATTTTTTTG-CCTC------------AACACCATTTTTTTTTTCAATT------ACTAGTCTTAAAACAATA-----T-CATTTAACGTT--CAACTACGAATTT-GAC-CAGAAATTAGGAGTTGCAGGCAGCTTCATTTGTGTAAA-GAAAAACTAG-TTT-----------GTT-----------------
gi|115474                     :           AAA-GTACAATTTTTAGTTACATTTTGC-CCCT------------AACACCCATTTCTT---AAATC------CATATTTTTAAATCAATA-----C-TATTTGACATAGTCAACGATTAATTATAAC-CAAAAGTTACGACTTGCAGGCAGCAACAGTTGTGCTAC-AAACAACTAG-TTTTTCATTTAAAAGTTGCAGG------------C-------AGC----------AACATTTGATACAATA
gi|115475                     :           AAA-GTACAGTTTTTAGTTACTTTTTGC-CCCA------------AACACCAATTTATT---TTATA------AGTAGTTTTAAAACA
gi|115476                     :           AAA-GTACAATGTTTACTTACTTTTTGC-CCAA------------AACACCCATTTATT---CAATA------------CTTA---------------TATTTAACAGT-TAAACAATGTATTA-GAC-CAGAATTTCTCAGTTGCAGGCAGCTGCATTTGCGGAAG-TAGCATTTAG-TTtttagcaatatca
gi|115477                     :           AGA-GCACAATTTCAAGTGACTTTTTGC-CCCA------------AACACCAATTTCTT---CAATA------AGTA
gi|115478                     :            AA-GTACACTTTT-AGTTGCTTTTCGT-CCT-------------AACAC----------------------------TCCTAAACCAATA-----T-TATCTGACATTGTCAACGAAGAATTA-GAC-CAGAAATTCTGAGTTGCAGGCAACAACATTTGTGCAAG-AAGCAACAAG-TTT-----------GTT-----------------C-------Acagccaaacctgtattatgcagcaacttaagtaaaagagcaaaaatgacctctaaagacaggtggctgc
gi|115479                     :            AA-ATACAATTTTTGGTTACTGT---------------------AACAACA-TTTCTT---CAATA------AGTATTTCTAAACAAATA-----T-TATTTGACATTGTACACAATTAATTA-G---------------GTCGCAGGCAGCTGCATTTGTGCAAG-AAGCAACTTG-TTT-----------GTTTTAGAGTTGCAGA----T-------AGC----------AACATTTGTTACAATA
gi|115480                     :             A-GTACAATTTTTAGTTACTTTTTAT-CCC-------------AACATCAATTTCTT---CAATA------ATCATTTTTAAACCAATA-----T-TATTTGGCATTGTCAGCGACAAATTA-GAC-CAGAAAATTTGAGTTGGAGGCAGCTGCATTTGTGCAAG-AAGCAACTAG-TTT-----------GTT-----------------C-------A
gi|115481                     :                                TTTTTGC-CCCC------------AACACCAATTTCTT-----AT------------TTTTAAAACAATA-----T-TATTTGACATTGTCAACAAAAAATTA-GAC-AAGAAAATCTGAGTTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTGG-TTT-----------GTT-----------------C-------AGC----------AACATTTGAAACAGTA
gi|115482                     :                                                                                                                       TGTCATCAACAAATTC-GAC-CAGACATTCTGAGTTACAGGCAGCTGCATTTGTGCAAA-AAGAAACTAG-TTT-----------GTT-----------------C-------AGT----------CACATTTCATACA





Alignments
lowQualScore                  :                                           1111111111111                                                                                                                                                       44444444444444444           11111111111               
lowQualScore                  :              1          5          0  1   4444444444444              222     444444    3       0     44444 1                 0 0      3   1        1                             1   0      1   88888888888   66666666666666666 6666666   00000000000               
lowQualScore                  :              .          .          .  .   .............              ...     ......    .       .     ..... .                 . .      .   .        .                             .   .      .   ...........   ................. .......   ...........               
lowQualScore                  :              8          1          8  7   9999999999999              999     888888    0       6     55555 8                 1 6      5   7        5                             7   4      7   66666666666   66666666666666666 2222222   22222222222               
consensus                     :           AAA-GTACAATTTTGAGTTACTTTTTGC-CCCC------------AACACCAATTTCTT---CAATA------AGTAGTTTTAAAACAATA-----T-TATTTGACATTGTCAACGACGAATTA-GAC-CAGAAATTCTGAGTTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTAG-TTT-----------GTT-----------------C-------AGC----------NACATTTGATACAATA
Reference ( family-726 )      :           AAA-GTACAATTTTGAGTTACTTTTTGC-CCCC------------AACACCAATTTCTT---CAATA------AGTAGTTTTAAAACAATA-----T-TATTTGACATTGTCAACGACGAATTA-GAC-CAGAAATTCTGAGTTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTAG-TTT-----------GTT-----------------C-------AGC----------NACATTTGATACAATA
gi|115458                     :           AAT-GTACAATTTTGAGTTACTTCTTGC-CCAG------------AACACCAATTTCTT---CAATA------AATAGTTTTAAAACAATA-----T-TATTTAACATTGTCAACAACGAATGA-GAC-CTGACATTCTGAGTTGCAGGCAGCTGCATTTGTACAGG-AAGAAACTAG-TTT-----------GTT-----------------C-------AGT----------CACATTTGATACAATA
gi|115459                     :           AAA-GTACAATTTTGAGTTACTTTTTGC-CCCC------------AACACCAATTTCTT---CAGTT------AGTAGTTTTAAAACAATA-----T-TATATAATTTTGTCATCAACAAATTA-GAC-CAGAAGTTCTGAGCTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTAG-TTG-----------GTT-----------------C-------AGT----------CATATTTGCTACAATA
gi|115460                     :           AAA-GTACAATTTTGAGTTACTTTT-GC-TCCC------------AGCACCCATTTCTT---CAATA------AGTAGTTTTAAAACAATA-----T-AATTTTACATTGTCAACAACAAATTA-GAC-CAGAAAGTATGAGTTGCAGGCAGCTGAATTTGTGCAAA-AAGAAACTTGATTT-----------GTT-----------------C-------AGC----------CACATTTGATACACTA
gi|115461                     :           AAA-CCACAATTTTGAGTTACTTTTTGC-CCCC------------AACACCAGTTTCTT---CAATA------AGTAGTTTTAAAACAATA-----T-AATTTGACATTGTCAACAATGAA-TA------AAAAATCATGAATTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTAG-ATT-----------GTT-----------------C-------AGT----------GACATTTGATACAATA
gi|115462                     :           AAA-GTACAATTTTGAGTTACTATTTGC-CCCA------------AACAA-AATTTCTT---CAATA------AATAGGTTTTAAACAATA-----T-TATTTAACATTGTCAACAATAATTTA-GAC-GCGAAATTTTGAGTTGCAGGCAGCTGCATTTGTGAAAG-AAGAAAATAG-TTT-----------GTT-----------------C-------AGT----------CACATTTGATACAATA
gi|115463                     :                                 TTTTGC-TCCCTAC---------AACACCAATTTTTT---CAATA------AGTAGTTTTAAAACAATA-----T-TATTTAACATTGTCAACAACAAATAA-GAC-CAGAAATTCTGAGTTGCAGGCAGCTTCATTTGCGCAAG-AAGAAACTAG-ATT-----------GTT-----------------C-------AGT----------CACATTTGCTACAATA
gi|115464                     : aaatgtacaaAAA-GTACAATTTTGAGTAACTATGTGC-CCCC------------AATACCAATTTTTT---CAATACCGGTAAGTATTTTTAAAACAATA-----T-TAGTTGACATTGTCAACGACGAATTA-GAC-ACGAAAATCTTAGTTGCAAGCAGCTGCATTTGTGCAAT-ATGAAACTAG-TTT-----------GTT-----------------C-------AGC----------AACATTTGATACAATA
gi|115465                     :           AAA-GTACAATTTTAAGTAACTTTTTGA-CCCC------------AACATCTATTTCTT---TAATA------AGTATTTTTAAAACAATA-----T-CATTTGACATTGTCAATGAAGAATTA-GAC-AAGAAAATATGAGTTTGAGGCAGCTGCA-TTGTGCAAG-AAGAAACTAG-TTT-----------TTT-----------------C-------AGC----------AACATTTGACAC
gi|115466                     :           AAG-GTACAATTTTGAGTTAATTCT-GC-CCTA------------AACACCAATTTCTT---CAATA------AATAGTTTTAAAATAATA-----T-TATTTAACATTGTCAACATTGAATTA-AAC-CTGAAATTCCGAGATGCAGACAGCTGCATTTGTATAGG-AAGATACTAG-TTT-----------GTT-----------------C-------AGT----------CACA-TTAATACAATA
gi|115467                     :           AAA-GTACAATTTTTGGTGACT---------CT------------AACAACA-TTTCTT---CAATA------AGTACTTTTAAACCAATA-----T-TATTTGACATTGTCAACAACGAATTA-GAC-AAGAAATTCTGAGTTACAGGCAGCTGCATTTGTACAAG-AAGCAACTAG-TTT-----------GCTTAAGAGTTGCAGG----T-------AGC----------AACATTTGATCAAATA
gi|115468                     :           AAATGTACAGTATTGAGTTACGTTTTGC-CCCC------------AGCACCAGTTTCTT---CAATA------TGTAGATTTAAAACAATAGTACATGTATTTAACATTATCAATGAAGAATTG-GAC-CAGAAATTAGGAGTTTCAAGCAGCTGCATTTATGCAAG-AA-AAACTAG-CTT-----------GTT-----------------C-------AGC----------CACATTTGATACAATA
gi|115469                     :           AAA-GAACAATTTTTAGTTACTTTTAGC-CACC------------AACACCCATTTCTT---CAGTA------AGTATTTTCAAACCAATA-----T-TGTTTGACATTGTCAACGATGAGTGA-GAC-CAGAAATTTTGAGCTGCGGGCAGCTACGTTTATGCAAGAAAGCAACTGG-TTT-----------GTT-----------------CATTTAAGAGCTGCAGGCAGAAACATTTTATACAATA
gi|115470                     :           AAT-GTACAATTTTGAGTTACTTCTTGC-CCCCCCCCCCCCACCCGACACCAATTTCTT---TATTA------AATAGTTTTAAAACAATA-----T-TATTTAACATTGTCAACAATGAATTA-GAC-CAGAAATTCTGAG---------------TTTGTACAGG-AAGAAAATAG-TTT-----------GTT-----------------C-------TGT----------CACATTTGATACAATA
gi|115471                     :           AAA-GTACAGTTTTTAGTTACTTTTTGC-CCCT------------AACACCCATTTCTT---CAATC------CATATTTTTAAATCAATA-----C-TATTTGACAGAGTCAACGATTAATTA-GAC-CAAAAGTTACGACTTGCAGGCAGCAACATTTGTGCTAC-AAACAACTAG-TTT-----------GTTCATTTAAAAGTTGCAGGC-------AGC----------AACATTTGATACAATA
gi|115472                     :           AAA-GTACAATTTC-AGTTAATTTT-ACACTTC------------AACACCCATTACTT---CATTA------AGTATTTTGAAACCAATA-----T-TATTTGACATTGTCAACGACGAATTACGACACA-ACATTTTGACTTGCAGGCAGCTGCATTTGTGCAAG-AAGCAGCT-G-TTC-----------ATTTAAGAGTTGAGG-----C-------AGC----------AACATTTGATACAA
gi|115473                     :           AAA-GTACAATTTGGAGTTATTTTTTTG-CCTC------------AACACCATTTTTTTTTTCAATT------ACTAGTCTTAAAACAATA-----T-CATTTAACGTT--CAACTACGAATTT-GAC-CAGAAATTAGGAGTTGCAGGCAGCTTCATTTGTGTAAA-GAAAAACTAG-TTT-----------GTT-----------------
gi|115474                     :           AAA-GTACAATTTTTAGTTACATTTTGC-CCCT------------AACACCCATTTCTT---AAATC------CATATTTTTAAATCAATA-----C-TATTTGACATAGTCAACGATTAATTATAAC-CAAAAGTTACGACTTGCAGGCAGCAACAGTTGTGCTAC-AAACAACTAG-TTTTTCATTTAAAAGTTGCAGG------------C-------AGC----------AACATTTGATACAATA
gi|115475                     :           AAA-GTACAGTTTTTAGTTACTTTTTGC-CCCA------------AACACCAATTTATT---TTATA------AGTAGTTTTAAAACA
gi|115476                     :           AAA-GTACAATGTTTACTTACTTTTTGC-CCAA------------AACACCCATTTATT---CAATA------------CTTA---------------TATTTAACAGT-TAAACAATGTATTA-GAC-CAGAATTTCTCAGTTGCAGGCAGCTGCATTTGCGGAAG-TAGCATTTAG-TTtttagcaatatca
gi|115477                     :           AGA-GCACAATTTCAAGTGACTTTTTGC-CCCA------------AACACCAATTTCTT---CAATA------AGTA
gi|115478                     :            AA-GTACACTTTT-AGTTGCTTTTCGT-CCT-------------AACAC----------------------------TCCTAAACCAATA-----T-TATCTGACATTGTCAACGAAGAATTA-GAC-CAGAAATTCTGAGTTGCAGGCAACAACATTTGTGCAAG-AAGCAACAAG-TTT-----------GTT-----------------C-------Acagccaaacctgtattatgcagcaacttaagtaaaagagcaaaaatgacctctaaagacaggtggctgc
gi|115479                     :            AA-ATACAATTTTTGGTTACTGT---------------------AACAACA-TTTCTT---CAATA------AGTATTTCTAAACAAATA-----T-TATTTGACATTGTACACAATTAATTA-G---------------GTCGCAGGCAGCTGCATTTGTGCAAG-AAGCAACTTG-TTT-----------GTTTTAGAGTTGCAGA----T-------AGC----------AACATTTGTTACAATA
gi|115480                     :             A-GTACAATTTTTAGTTACTTTTTAT-CCC-------------AACATCAATTTCTT---CAATA------ATCATTTTTAAACCAATA-----T-TATTTGGCATTGTCAGCGACAAATTA-GAC-CAGAAAATTTGAGTTGGAGGCAGCTGCATTTGTGCAAG-AAGCAACTAG-TTT-----------GTT-----------------C-------A
gi|115481                     :                                TTTTTGC-CCCC------------AACACCAATTTCTT-----AT------------TTTTAAAACAATA-----T-TATTTGACATTGTCAACAAAAAATTA-GAC-AAGAAAATCTGAGTTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTGG-TTT-----------GTT-----------------C-------AGC----------AACATTTGAAACAGTA
gi|115482                     :                                                                                                                       TGTCATCAACAAATTC-GAC-CAGACATTCTGAGTTACAGGCAGCTGCATTTGTGCAAA-AAGAAACTAG-TTT-----------GTT-----------------C-------AGT----------CACATTTCATACA


blockSeqs                     :              T          G             A   CCCCCCCCCACCC              TTT     CCGGTA    G             GTACA G                          C   A        C                             A          A   TTCATTTAAAA   CATTTAAAAGTTGCAGG ATTTAAG   TGCAGGCAGAA
blockSeqs                     :              .          G             .   CTAC                       .       .         G             .     .                          T   .        A                             .          .   .             TAAGAGTTGCAGG     .         C          
blockSeqs                     :              .          G             .   C                          .       .         G             .     .                          .   .        A                             .          .   .             TTAGAGTTGCAGA     .         C          
blockSeqs                     :              .          G             .   C                          .       .         G             .     .                          .   .        T                             .          .   .             TAAGAGTTGAGG      .         G          
blockSeqs                     :              .          G             .   C                          .       .         G             .     .                          .   .        C                             .          .   .             GCAGG             .         C          
blockSeqs                     :              .          A             .   A                          .       .         T             .     .                          .   .        C                             .          .   .             .                 .         C          
blockSeqs                     :              .          G             .   C                          .       .         T             .     .                          .   .        A                             .          .   .             .                 .         A          
blockSeqs                     :              .          T             .   C                          .       .         G             .     .                          .   .        C                             .          .   .             .                 .         A          
blockSeqs                     :              .          G             .   A                          .       .         C             .     .                          .   .        C                             .          .   .             .                 .         C          
blockSeqs                     :              .          T             .   T                          .       .         G             .     .                          .   .        A                             .          .   .             .                 .         A          
blockSeqs                     :              .          G             .   C                          .       .         T             .     .                          .   .        T                             .          .   .             .                 .         C          
blockSeqs                     :              .          T             .   C                          .       .         G             .     .                          .   .        C                             .          .   .             .                 .         C          
blockSeqs                     :              .          G             .   T                          .       .         T             .     .                          .   .        A                             .          .   .             .                 .         A          
blockSeqs                     :              .          T             .   C                          .       .         T             .     .                          .   .        T                             .          .   .             .                 .         A          
blockSeqs                     :              .          T             .   C                          .       .         G             .     .                          .   .        A                             .          .   .             .                 .         A          
blockSeqs                     :              .          T             .   T                          .       .         T             .     .                          .   .        A                             .          .   .             .                 .         A          
blockSeqs                     :              .          A             .   A                          .       .         G             .     .                          .   .        C                             .          .   .             .                 .         A          
blockSeqs                     :              .          T             .   A                          .       .         T             .     .                          .   .        C                             .          .   .             .                 .         C          
blockSeqs                     :              .          T             .   A                          .       .         T             .     .                          .   .        T                             .          .   .             .                 .                    
blockSeqs                     :              .          .             .   C                          .       .         .             .     .                          .   .        C                             .          .   .             .                 .                    
blockSeqs                     :              .          .             .   .                          .       .         .             .     .                          .   .        C                             .          .   .             .                                      
blockSeqs                     :                                       .   .                          .       .         .                                              .   .        .                             .          .                                                        
blockSeqs                     :                                       .   .                          .       .                                                                                                                                                                       


blockSeqCons                  :           
originalCons                  :           AAA-GTACAATTTTGAGTTACTTTTTGC-CCCC------------AACACCAATTTCTT---CAATA------AGTAGTTTTAAAACAATA-----T-TATTTGACATTGTCAACGACGAATTA-GAC-CAGAAATTCTGAGTTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTAG-TTT-----------GTT-----------------C-------AGC----------NACATTTGATACAATA
finalCons                     :           AAA-GTACAATTTTGAGTTACTTTTTGC-CCCC------------AACACCAATTTCTT---CAATA------AGTAGTTTTAAAACAATA-----T-TATTTGACATTGTCAACGACGAATTA-GAC-CAGAAATTCTGAGTTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTAG-TTT-----------GTT-----------------C-------AGC----------NACATTTGATACAATA





Alignments
lowQualScore                  :                                           1111111111111                                                                                                                                                       44444444444444444           11111111111               
lowQualScore                  :              1          5          0  1   4444444444444              222     444444    3       0     44444 1                 0 0      3   1        1                             1   0      1   88888888888   66666666666666666 6666666   00000000000               
lowQualScore                  :              .          .          .  .   .............              ...     ......    .       .     ..... .                 . .      .   .        .                             .   .      .   ...........   ................. .......   ...........               
lowQualScore                  :              8          1          8  7   9999999999999              999     888888    0       6     55555 8                 1 6      5   7        5                             7   4      7   66666666666   66666666666666666 2222222   22222222222               
consensus                     :           AAA-GTACAATTTTGAGTTACTTTTTGC-CCCC------------AACACCAATTTCTT---CAATA------AGTAGTTTTAAAACAATA-----T-TATTTGACATTGTCAACGACGAATTA-GAC-CAGAAATTCTGAGTTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTAG-TTT-----------GTT-----------------C-------AGC----------NACATTTGATACAATA
Reference ( family-726 )      :           AAA-GTACAATTTTGAGTTACTTTTTGC-CCCC------------AACACCAATTTCTT---CAATA------AGTAGTTTTAAAACAATA-----T-TATTTGACATTGTCAACGACGAATTA-GAC-CAGAAATTCTGAGTTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTAG-TTT-----------GTT-----------------C-------AGC----------NACATTTGATACAATA
gi|115458                     :           AAT-GTACAATTTTGAGTTACTTCTTGC-CCAG------------AACACCAATTTCTT---CAATA------AATAGTTTTAAAACAATA-----T-TATTTAACATTGTCAACAACGAATGA-GAC-CTGACATTCTGAGTTGCAGGCAGCTGCATTTGTACAGG-AAGAAACTAG-TTT-----------GTT-----------------C-------AGT----------CACATTTGATACAATA
gi|115459                     :           AAA-GTACAATTTTGAGTTACTTTTTGC-CCCC------------AACACCAATTTCTT---CAGTT------AGTAGTTTTAAAACAATA-----T-TATATAATTTTGTCATCAACAAATTA-GAC-CAGAAGTTCTGAGCTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTAG-TTG-----------GTT-----------------C-------AGT----------CATATTTGCTACAATA
gi|115460                     :           AAA-GTACAATTTTGAGTTACTTTT-GC-TCCC------------AGCACCCATTTCTT---CAATA------AGTAGTTTTAAAACAATA-----T-AATTTTACATTGTCAACAACAAATTA-GAC-CAGAAAGTATGAGTTGCAGGCAGCTGAATTTGTGCAAA-AAGAAACTTGATTT-----------GTT-----------------C-------AGC----------CACATTTGATACACTA
gi|115461                     :           AAA-CCACAATTTTGAGTTACTTTTTGC-CCCC------------AACACCAGTTTCTT---CAATA------AGTAGTTTTAAAACAATA-----T-AATTTGACATTGTCAACAATGAA-TA------AAAAATCATGAATTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTAG-ATT-----------GTT-----------------C-------AGT----------GACATTTGATACAATA
gi|115462                     :           AAA-GTACAATTTTGAGTTACTATTTGC-CCCA------------AACAA-AATTTCTT---CAATA------AATAGGTTTTAAACAATA-----T-TATTTAACATTGTCAACAATAATTTA-GAC-GCGAAATTTTGAGTTGCAGGCAGCTGCATTTGTGAAAG-AAGAAAATAG-TTT-----------GTT-----------------C-------AGT----------CACATTTGATACAATA
gi|115463                     :                                 TTTTGC-TCCCTAC---------AACACCAATTTTTT---CAATA------AGTAGTTTTAAAACAATA-----T-TATTTAACATTGTCAACAACAAATAA-GAC-CAGAAATTCTGAGTTGCAGGCAGCTTCATTTGCGCAAG-AAGAAACTAG-ATT-----------GTT-----------------C-------AGT----------CACATTTGCTACAATA
gi|115464                     : aaatgtacaaAAA-GTACAATTTTGAGTAACTATGTGC-CCCC------------AATACCAATTTTTT---CAATACCGGTAAGTATTTTTAAAACAATA-----T-TAGTTGACATTGTCAACGACGAATTA-GAC-ACGAAAATCTTAGTTGCAAGCAGCTGCATTTGTGCAAT-ATGAAACTAG-TTT-----------GTT-----------------C-------AGC----------AACATTTGATACAATA
gi|115465                     :           AAA-GTACAATTTTAAGTAACTTTTTGA-CCCC------------AACATCTATTTCTT---TAATA------AGTATTTTTAAAACAATA-----T-CATTTGACATTGTCAATGAAGAATTA-GAC-AAGAAAATATGAGTTTGAGGCAGCTGCA-TTGTGCAAG-AAGAAACTAG-TTT-----------TTT-----------------C-------AGC----------AACATTTGACAC
gi|115466                     :           AAG-GTACAATTTTGAGTTAATTCT-GC-CCTA------------AACACCAATTTCTT---CAATA------AATAGTTTTAAAATAATA-----T-TATTTAACATTGTCAACATTGAATTA-AAC-CTGAAATTCCGAGATGCAGACAGCTGCATTTGTATAGG-AAGATACTAG-TTT-----------GTT-----------------C-------AGT----------CACA-TTAATACAATA
gi|115467                     :           AAA-GTACAATTTTTGGTGACT---------CT------------AACAACA-TTTCTT---CAATA------AGTACTTTTAAACCAATA-----T-TATTTGACATTGTCAACAACGAATTA-GAC-AAGAAATTCTGAGTTACAGGCAGCTGCATTTGTACAAG-AAGCAACTAG-TTT-----------GCTTAAGAGTTGCAGG----T-------AGC----------AACATTTGATCAAATA
gi|115468                     :           AAATGTACAGTATTGAGTTACGTTTTGC-CCCC------------AGCACCAGTTTCTT---CAATA------TGTAGATTTAAAACAATAGTACATGTATTTAACATTATCAATGAAGAATTG-GAC-CAGAAATTAGGAGTTTCAAGCAGCTGCATTTATGCAAG-AA-AAACTAG-CTT-----------GTT-----------------C-------AGC----------CACATTTGATACAATA
gi|115469                     :           AAA-GAACAATTTTTAGTTACTTTTAGC-CACC------------AACACCCATTTCTT---CAGTA------AGTATTTTCAAACCAATA-----T-TGTTTGACATTGTCAACGATGAGTGA-GAC-CAGAAATTTTGAGCTGCGGGCAGCTACGTTTATGCAAGAAAGCAACTGG-TTT-----------GTT-----------------CATTTAAGAGCTGCAGGCAGAAACATTTTATACAATA
gi|115470                     :           AAT-GTACAATTTTGAGTTACTTCTTGC-CCCCCCCCCCCCACCCGACACCAATTTCTT---TATTA------AATAGTTTTAAAACAATA-----T-TATTTAACATTGTCAACAATGAATTA-GAC-CAGAAATTCTGAG---------------TTTGTACAGG-AAGAAAATAG-TTT-----------GTT-----------------C-------TGT----------CACATTTGATACAATA
gi|115471                     :           AAA-GTACAGTTTTTAGTTACTTTTTGC-CCCT------------AACACCCATTTCTT---CAATC------CATATTTTTAAATCAATA-----C-TATTTGACAGAGTCAACGATTAATTA-GAC-CAAAAGTTACGACTTGCAGGCAGCAACATTTGTGCTAC-AAACAACTAG-TTT-----------GTTCATTTAAAAGTTGCAGGC-------AGC----------AACATTTGATACAATA
gi|115472                     :           AAA-GTACAATTTC-AGTTAATTTT-ACACTTC------------AACACCCATTACTT---CATTA------AGTATTTTGAAACCAATA-----T-TATTTGACATTGTCAACGACGAATTACGACACA-ACATTTTGACTTGCAGGCAGCTGCATTTGTGCAAG-AAGCAGCT-G-TTC-----------ATTTAAGAGTTGAGG-----C-------AGC----------AACATTTGATACAA
gi|115473                     :           AAA-GTACAATTTGGAGTTATTTTTTTG-CCTC------------AACACCATTTTTTTTTTCAATT------ACTAGTCTTAAAACAATA-----T-CATTTAACGTT--CAACTACGAATTT-GAC-CAGAAATTAGGAGTTGCAGGCAGCTTCATTTGTGTAAA-GAAAAACTAG-TTT-----------GTT-----------------
gi|115474                     :           AAA-GTACAATTTTTAGTTACATTTTGC-CCCT------------AACACCCATTTCTT---AAATC------CATATTTTTAAATCAATA-----C-TATTTGACATAGTCAACGATTAATTATAAC-CAAAAGTTACGACTTGCAGGCAGCAACAGTTGTGCTAC-AAACAACTAG-TTTTTCATTTAAAAGTTGCAGG------------C-------AGC----------AACATTTGATACAATA
gi|115475                     :           AAA-GTACAGTTTTTAGTTACTTTTTGC-CCCA------------AACACCAATTTATT---TTATA------AGTAGTTTTAAAACA
gi|115476                     :           AAA-GTACAATGTTTACTTACTTTTTGC-CCAA------------AACACCCATTTATT---CAATA------------CTTA---------------TATTTAACAGT-TAAACAATGTATTA-GAC-CAGAATTTCTCAGTTGCAGGCAGCTGCATTTGCGGAAG-TAGCATTTAG-TTtttagcaatatca
gi|115477                     :           AGA-GCACAATTTCAAGTGACTTTTTGC-CCCA------------AACACCAATTTCTT---CAATA------AGTA
gi|115478                     :            AA-GTACACTTTT-AGTTGCTTTTCGT-CCT-------------AACAC----------------------------TCCTAAACCAATA-----T-TATCTGACATTGTCAACGAAGAATTA-GAC-CAGAAATTCTGAGTTGCAGGCAACAACATTTGTGCAAG-AAGCAACAAG-TTT-----------GTT-----------------C-------Acagccaaacctgtattatgcagcaacttaagtaaaagagcaaaaatgacctctaaagacaggtggctgc
gi|115479                     :            AA-ATACAATTTTTGGTTACTGT---------------------AACAACA-TTTCTT---CAATA------AGTATTTCTAAACAAATA-----T-TATTTGACATTGTACACAATTAATTA-G---------------GTCGCAGGCAGCTGCATTTGTGCAAG-AAGCAACTTG-TTT-----------GTTTTAGAGTTGCAGA----T-------AGC----------AACATTTGTTACAATA
gi|115480                     :             A-GTACAATTTTTAGTTACTTTTTAT-CCC-------------AACATCAATTTCTT---CAATA------ATCATTTTTAAACCAATA-----T-TATTTGGCATTGTCAGCGACAAATTA-GAC-CAGAAAATTTGAGTTGGAGGCAGCTGCATTTGTGCAAG-AAGCAACTAG-TTT-----------GTT-----------------C-------A
gi|115481                     :                                TTTTTGC-CCCC------------AACACCAATTTCTT-----AT------------TTTTAAAACAATA-----T-TATTTGACATTGTCAACAAAAAATTA-GAC-AAGAAAATCTGAGTTGCAGGCAGCTGCATTTGTGCAAG-AAGAAACTGG-TTT-----------GTT-----------------C-------AGC----------AACATTTGAAACAGTA
gi|115482                     :                                                                                                                       TGTCATCAACAAATTC-GAC-CAGACATTCTGAGTTACAGGCAGCTGCATTTGTGCAAA-AAGAAACTAG-TTT-----------GTT-----------------C-------AGT----------CACATTTCATACA