lowQualScore : 1 1 44444444 1 1 1 22 22 4
lowQualScore : . . ........ . . . .. .. .
lowQualScore : 7 5 33333333 4 4 4 11 33 7
consensus : ACA-ACA-TTGAC-----TC-GTACAATATAAA-TCCATATTG-TAC-AGTGAA--CTGTATA--ATAACCTTATAAT
Reference ( gi|125728 ) : ACA-ACA-TTGAC-----TC-GTACAATATAAA-TCCATATTG-TAC-AGTGAA--CTGTATA--ATAACCTTATAGT
gi|125729 : ACA-ACA-TTGAC-----TC-GTAGAATTTAAA-TCCATATTG-TAC-AGTGAA--CTGTATA--ATAACCTTATAA
gi|125730 : ACA-ACA-TTGAC-----TT-GTACAATATAAA-TCCGTATTG-TAC-ATTGAA--CTGTATA--ATAACCTTATAA
gi|125732 : ACA-ACA-TTGAC-----TC-ATACAATATAAA-TCCATATTG-TAC-AGTGAA--CTGT-----ATAACCTTATAA
gi|125734 : ACA-ACA-TTAAC-----TC-GTACAATATAAA-TCAATATTG-TAC-AGTGAA--CTATATC--ATAACCTTATAA
gi|125735 : ATA-ACT-TTGAC-----CA-GTACAATATAAA-TCCATATTG-TAC-AGTGAA--CTGTATA--ATAACCTTATAA
gi|125737 : ACA-ACA-TTGAC-----TC-GTACAATGAAAA-GCCATATTG-TAC-AGTGAA--CTGTATA--ATGACCTT
gi|125738 : ACA-ACA-TTAAC-----TT-GTACCATATAGA-TCCATATTG-TAC-AGTGAA---TGTATA--ATTACCTTATAA
gi|125740 : ACA-ACA-TTGAC-----GA-GTACAATATAAA-TCCATATTG-TAC-AGTGAA--CTAT-----ATAACCTGATA
gi|125731 : ACA-GCA-TTGAC-----GA-GTGCAATAAAAA-TCCATATTG-TAC-AGTAAA--TTGTATA--ATAACTTTATAA
gi|125741 : ACA-ACA-TTGACGAGACTCAGTACAATAAAAA-TCCATATTG-TAC-AGTGAA--CAGTATA--ATTACCTT
gi|125733 : ACA-CCA-TTGAC-----GA-GTACAAT-CAAA-TCCATATTT-TAC-AGTGAA--CTGTATA--ATTACCTTATA
gi|125743 : ACA-ACA-TTGAC-----GA-GTACATTAAAAAATCCATATTG-TAC-AGTGAA--CTGAATA--TTGACCTT
gi|125742 : ACATACA-T--AC-----TC-GTACAATATATA-TCCATATTG-TAC-AAAACA--CTGTAAA--ATAACCTTATAtaa
gi|125744 : ACA-ACA-TAGAC-----CC-GTACAATAAAAA-TCCCTATTG-TAC-AGTAAA--CTATGT
gi|125739 : ACA-ACA-TTGAC-----GA-GTACAATAAATA-TCAATATTG-TAC-AGCAAA--CTGTATA--AT
gi|125736 : ACA-ACA-TTGAC-----GA-GTTTAATAAAAA-TTCATATTGCTA--AGTGAA--CTGTATA--ATGACCTT
gi|125745 : ACA-ATA-TGTAC-----TC-GTACAATATATT-TCCATATTG-TAC-A--AAA--CCGTGTAACATAACCTTATA
gi|125746 : ATA-GCA-T--AC-----TC-GTACAATATAAT-CCCATATTG-TAC-A--AAACTCTGTAAA--ATAACCTTATA
gi|125747 : ACA-ATA-CCTAC-----TC-GTACAATATATT-CCCATATTG-TAC-ACAACA--CTGTCAA--ATAACCTTATAA
gi|125748 : CA-GCT-TTTAC-----TC-ATGCAATTAAAA-TCCATATTG-TAC-ATTGAA--CTGTATA--TTAGTCATATA
gi|125750 : -ACAGTTCAC-----T--GTACAATATGAA-TTTATATTG-TAC-
gi|125738 : cattgattc-ACA-TTCAC-----T--GTACAATATGGA-TCTATATGG-TAC-Aataataaccttataat
gi|125742 : acaacattaact-ACA-GTGTT-----TT-GTACAATATGGA-TATATATTG-TACGAGTA-----TGTATataattaccttataat
gi|125749 : ac-ACA-T--AC-----TC-GTACAATATATT-CCCATATTG-TAC-AAAACA--CTGTAAA--ATAACCTTATAaaaataaccttata
gi|125750 : CA-TTGAT-----TC-GTACAATATAAA-TTCATATTG-TAC-AGTGAA--CTGTATA--ATAACCTTATAA
gi|125751 : A-TTGAC-----TT-GTACAATATAAA-TCCAAATTG-TAC-AGTGAA--CTGTATA--ACAACCTTATAA
gi|125752 : -TTGAC-----TC-GTACAATTTAAA-TCCATATTG-TAC-AGTGAC--CTCTATA--ATAACCTTATAG
gi|125753 : GAC-----TC-GTACAATATAAA-TCCATATTG-TAC-TGTGAG--CTGTATA--ATAACCTTATAA
Alignments
lowQualScore : 1 33333 1 1 1 22 22
lowQualScore : . ..... . . . .. ..
lowQualScore : 8 88888 5 5 5 11 22
consensus : ACA-ACATTGAC-----TC-GTACAATATAAA-TCCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAAT
Reference ( family-722 ) : ACA-ACATTGAC-----TC-GTACAATATAAA-TCCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAAT
gi|125728 : ACA-ACATTGAC-----TC-GTACAATATAAA-TCCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAGT
gi|125729 : ACA-ACATTGAC-----TC-GTAGAATTTAAA-TCCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAAT
gi|125730 : ACA-ACATTGAC-----TT-GTACAATATAAA-TCCGTATTG-TACATTGAA--CTGTATA--ATAACCTTATAAT
gi|125731 : ACA-GCATTGAC-----GA-GTGCAATAAAAA-TCCATATTG-TACAGTAAA--TTGTATA--ATAACTTTATAAT
gi|125732 : ACA-ACATTGAC-----TC-ATACAATATAAA-TCCATATTG-TACAGTGAA--CTGT-----ATAACCTTATAAT
gi|125733 : ACA-CCATTGAC-----GA-GTACAAT-CAAA-TCCATATTT-TACAGTGAA--CTGTATA--ATTACCTTATA
gi|125734 : ACA-ACATTAAC-----TC-GTACAATATAAA-TCAATATTG-TACAGTGAA--CTATATC--ATAACCTTATAAT
gi|125735 : ATA-ACTTTGAC-----CA-GTACAATATAAA-TCCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAAT
gi|125736 : ACA-ACATTGAC-----GA-GTTTAATAAAAA-TTCATATTGCTA-AGTGAA--CTGTATA--ATGACCTT
gi|125737 : ACA-ACATTGAC-----TC-GTACAATGAAAA-GCCATATTG-TACAGTGAA--CTGTATA--ATGACCTT
gi|125738 : ACA-ACATTAAC-----TT-GTACCATATAGA-TCCATATTG-TACAGTGAA---TGTATA--ATTACCTTATAAT
gi|125739 : ACA-ACATTGAC-----GA-GTACAATAAATA-TCAATATTG-TACAGCAAA--CTGTATA--AT
gi|125740 : ACA-ACATTGAC-----GA-GTACAATATAAA-TCCATATTG-TACAGTGAA--CTAT-----ATAACCTGATA
gi|125741 : ACA-ACATTGACGAGACTCAGTACAATAAAAA-TCCATATTG-TACAGTGAA--CAGTATA--ATTACCTT
gi|125742 : ACATACAT--AC-----TC-GTACAATATATA-TCCATATTG-TACAAAACA--CTGTAAA--ATAACCTTATA
gi|125743 : ACA-ACATTGAC-----GA-GTACATTAAAAAATCCATATTG-TACAGTGAA--CTGAATA--TTGACCTT-TAA
gi|125744 : ACA-ACATAGAC-----CC-GTACAATAAAAA-TCCCTATTG-TACAGTAAA--CTATGT
gi|125745 : ACA-ATATGTAC-----TC-GTACAATATATT-TCCATATTG-TACA--AAA--CCGTGTAACATAACCTTATA
gi|125746 : ATA-GCAT--AC-----TC-GTACAATATAAT-CCCATATTG-TACA--AAACTCTGTAAA--ATAACCTTATA
gi|125747 : ACA-ATACCTAC-----TC-GTACAATATATT-CCCATATTG-TACACAACA--CTGTCAA--ATAACCTTATAAT
gi|125748 : CA-GCTTTTAC-----TC-ATGCAATTAAAA-TCCATATTG-TACATTGAA--CTGTATA--TTAGTCATATA
gi|125749 : -ACAT--AC-----TC-GTACAATATATT-CCCATATTG-TACAAAACA--CTGTAAA--ATAACCTTATA
gi|125750 : CATTGAT-----TC-GTACAATATAAA-TTCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAAT
gi|125751 : ATTGAC-----TT-GTACAATATAAA-TCCAAATTG-TACAGTGAA--CTGTATA--ACAACCTTATAAT
gi|125752 : TTGAC-----TC-GTACAATTTAAA-TCCATATTG-TACAGTGAC--CTCTATA--ATAACCTTATAGT
gi|125753 : GAC-----TC-GTACAATATAAA-TCCATATTG-TACTGTGAG--CTGTATA--ATAACCTTATAAT
Alignments
lowQualScore : 1 33333 1 1 1 22 22
lowQualScore : . ..... . . . .. ..
lowQualScore : 8 88888 5 5 5 11 22
consensus : ACA-ACATTGAC-----TC-GTACAATATAAA-TCCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAAT
Reference ( family-722 ) : ACA-ACATTGAC-----TC-GTACAATATAAA-TCCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAAT
gi|125728 : ACA-ACATTGAC-----TC-GTACAATATAAA-TCCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAGT
gi|125729 : ACA-ACATTGAC-----TC-GTAGAATTTAAA-TCCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAAT
gi|125730 : ACA-ACATTGAC-----TT-GTACAATATAAA-TCCGTATTG-TACATTGAA--CTGTATA--ATAACCTTATAAT
gi|125731 : ACA-GCATTGAC-----GA-GTGCAATAAAAA-TCCATATTG-TACAGTAAA--TTGTATA--ATAACTTTATAAT
gi|125732 : ACA-ACATTGAC-----TC-ATACAATATAAA-TCCATATTG-TACAGTGAA--CTGT-----ATAACCTTATAAT
gi|125733 : ACA-CCATTGAC-----GA-GTACAAT-CAAA-TCCATATTT-TACAGTGAA--CTGTATA--ATTACCTTATA
gi|125734 : ACA-ACATTAAC-----TC-GTACAATATAAA-TCAATATTG-TACAGTGAA--CTATATC--ATAACCTTATAAT
gi|125735 : ATA-ACTTTGAC-----CA-GTACAATATAAA-TCCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAAT
gi|125736 : ACA-ACATTGAC-----GA-GTTTAATAAAAA-TTCATATTGCTA-AGTGAA--CTGTATA--ATGACCTT
gi|125737 : ACA-ACATTGAC-----TC-GTACAATGAAAA-GCCATATTG-TACAGTGAA--CTGTATA--ATGACCTT
gi|125738 : ACA-ACATTAAC-----TT-GTACCATATAGA-TCCATATTG-TACAGTGAA---TGTATA--ATTACCTTATAAT
gi|125739 : ACA-ACATTGAC-----GA-GTACAATAAATA-TCAATATTG-TACAGCAAA--CTGTATA--AT
gi|125740 : ACA-ACATTGAC-----GA-GTACAATATAAA-TCCATATTG-TACAGTGAA--CTAT-----ATAACCTGATA
gi|125741 : ACA-ACATTGACGAGACTCAGTACAATAAAAA-TCCATATTG-TACAGTGAA--CAGTATA--ATTACCTT
gi|125742 : ACATACAT--AC-----TC-GTACAATATATA-TCCATATTG-TACAAAACA--CTGTAAA--ATAACCTTATA
gi|125743 : ACA-ACATTGAC-----GA-GTACATTAAAAAATCCATATTG-TACAGTGAA--CTGAATA--TTGACCTT-TAA
gi|125744 : ACA-ACATAGAC-----CC-GTACAATAAAAA-TCCCTATTG-TACAGTAAA--CTATGT
gi|125745 : ACA-ATATGTAC-----TC-GTACAATATATT-TCCATATTG-TACA--AAA--CCGTGTAACATAACCTTATA
gi|125746 : ATA-GCAT--AC-----TC-GTACAATATAAT-CCCATATTG-TACA--AAACTCTGTAAA--ATAACCTTATA
gi|125747 : ACA-ATACCTAC-----TC-GTACAATATATT-CCCATATTG-TACACAACA--CTGTCAA--ATAACCTTATAAT
gi|125748 : CA-GCTTTTAC-----TC-ATGCAATTAAAA-TCCATATTG-TACATTGAA--CTGTATA--TTAGTCATATA
gi|125749 : -ACAT--AC-----TC-GTACAATATATT-CCCATATTG-TACAAAACA--CTGTAAA--ATAACCTTATA
gi|125750 : CATTGAT-----TC-GTACAATATAAA-TTCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAAT
gi|125751 : ATTGAC-----TT-GTACAATATAAA-TCCAAATTG-TACAGTGAA--CTGTATA--ACAACCTTATAAT
gi|125752 : TTGAC-----TC-GTACAATTTAAA-TCCATATTG-TACAGTGAC--CTCTATA--ATAACCTTATAGT
gi|125753 : GAC-----TC-GTACAATATAAA-TCCATATTG-TACTGTGAG--CTGTATA--ATAACCTTATAAT
blockSeqs : T GAGAC A A C CT AC
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blockSeqCons :
originalCons : ACA-ACATTGAC-----TC-GTACAATATAAA-TCCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAAT
finalCons : ACA-ACATTGAC-----TC-GTACAATATAAA-TCCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAAT
Alignments
lowQualScore : 1 33333 1 1 1 22 22
lowQualScore : . ..... . . . .. ..
lowQualScore : 8 88888 5 5 5 11 22
consensus : ACA-ACATTGAC-----TC-GTACAATATAAA-TCCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAAT
Reference ( family-722 ) : ACA-ACATTGAC-----TC-GTACAATATAAA-TCCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAAT
gi|125728 : ACA-ACATTGAC-----TC-GTACAATATAAA-TCCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAGT
gi|125729 : ACA-ACATTGAC-----TC-GTAGAATTTAAA-TCCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAAT
gi|125730 : ACA-ACATTGAC-----TT-GTACAATATAAA-TCCGTATTG-TACATTGAA--CTGTATA--ATAACCTTATAAT
gi|125731 : ACA-GCATTGAC-----GA-GTGCAATAAAAA-TCCATATTG-TACAGTAAA--TTGTATA--ATAACTTTATAAT
gi|125732 : ACA-ACATTGAC-----TC-ATACAATATAAA-TCCATATTG-TACAGTGAA--CTGT-----ATAACCTTATAAT
gi|125733 : ACA-CCATTGAC-----GA-GTACAAT-CAAA-TCCATATTT-TACAGTGAA--CTGTATA--ATTACCTTATA
gi|125734 : ACA-ACATTAAC-----TC-GTACAATATAAA-TCAATATTG-TACAGTGAA--CTATATC--ATAACCTTATAAT
gi|125735 : ATA-ACTTTGAC-----CA-GTACAATATAAA-TCCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAAT
gi|125736 : ACA-ACATTGAC-----GA-GTTTAATAAAAA-TTCATATTGCTA-AGTGAA--CTGTATA--ATGACCTT
gi|125737 : ACA-ACATTGAC-----TC-GTACAATGAAAA-GCCATATTG-TACAGTGAA--CTGTATA--ATGACCTT
gi|125738 : ACA-ACATTAAC-----TT-GTACCATATAGA-TCCATATTG-TACAGTGAA---TGTATA--ATTACCTTATAAT
gi|125739 : ACA-ACATTGAC-----GA-GTACAATAAATA-TCAATATTG-TACAGCAAA--CTGTATA--AT
gi|125740 : ACA-ACATTGAC-----GA-GTACAATATAAA-TCCATATTG-TACAGTGAA--CTAT-----ATAACCTGATA
gi|125741 : ACA-ACATTGACGAGACTCAGTACAATAAAAA-TCCATATTG-TACAGTGAA--CAGTATA--ATTACCTT
gi|125742 : ACATACAT--AC-----TC-GTACAATATATA-TCCATATTG-TACAAAACA--CTGTAAA--ATAACCTTATA
gi|125743 : ACA-ACATTGAC-----GA-GTACATTAAAAAATCCATATTG-TACAGTGAA--CTGAATA--TTGACCTT-TAA
gi|125744 : ACA-ACATAGAC-----CC-GTACAATAAAAA-TCCCTATTG-TACAGTAAA--CTATGT
gi|125745 : ACA-ATATGTAC-----TC-GTACAATATATT-TCCATATTG-TACA--AAA--CCGTGTAACATAACCTTATA
gi|125746 : ATA-GCAT--AC-----TC-GTACAATATAAT-CCCATATTG-TACA--AAACTCTGTAAA--ATAACCTTATA
gi|125747 : ACA-ATACCTAC-----TC-GTACAATATATT-CCCATATTG-TACACAACA--CTGTCAA--ATAACCTTATAAT
gi|125748 : CA-GCTTTTAC-----TC-ATGCAATTAAAA-TCCATATTG-TACATTGAA--CTGTATA--TTAGTCATATA
gi|125749 : -ACAT--AC-----TC-GTACAATATATT-CCCATATTG-TACAAAACA--CTGTAAA--ATAACCTTATA
gi|125750 : CATTGAT-----TC-GTACAATATAAA-TTCATATTG-TACAGTGAA--CTGTATA--ATAACCTTATAAT
gi|125751 : ATTGAC-----TT-GTACAATATAAA-TCCAAATTG-TACAGTGAA--CTGTATA--ACAACCTTATAAT
gi|125752 : TTGAC-----TC-GTACAATTTAAA-TCCATATTG-TACAGTGAC--CTCTATA--ATAACCTTATAGT
gi|125753 : GAC-----TC-GTACAATATAAA-TCCATATTG-TACTGTGAG--CTGTATA--ATAACCTTATAAT