lowQualScore : 111 1 11111 22222
lowQualScore : 22 1 9999999 666 55 1 333 55 55 1 2 555555 88888 1 666 555555 1 1 0 0 0 22 1 11111 44444 2
lowQualScore : .. . ....... ... .. . ... .. .. . . ...... ..... . ... ...... . . . . . .. . ..... ..... .
lowQualScore : 55 8 0000000 888 00 9 000 11 99 7 9 777777 77777 7 111 000000 7 7 2 4 4 44 4 66666 99999 5
consensus : ATTTG--TAA-T-TAT---CCAN-TT--GCAACATGCAATTTA---CACAC-A--TGGAAGTT-AGAAATTGTCATT----CGAGTG-AATGTAA-TT---TG------T-AA-TAACCAAGTTAAAAA-ATACAATN----AAGCAA-TCTGAA-TTATGGCGGATAAT
Reference ( gi|2079 ) : ATTTA--TAA-T-CAT---CCAG-AT--GCAACATGCAATTTA---CACAT-A--TGGAAGTT-AAAAATTGTCGTT----TGAACG-GATGTAA-TT---TG------T-AA-TAACCAAGTTAAAAA-ATAGAATT----AAGCAA-ACCTAA-TTATGGCGGATAAT
gi|2078 : ATTTA--TAA-T-CAT---CCAG-AT--GCAACATGCAATTTA---CACAT-A--AGGAAGTT-AAAAATTGTCGTT----CAAATG-GATGTAA-TT---TG------T-AA-TAACCAAGTTAAAAA-ATAGAATA----AAGCAA-ACCTAA-TTATGGCGGATAAT
gi|2076 : ATTTA--TAA-T-TAT---TCAG-TT--GCAACATTCAATTTA---CACAC-AA-TGGAAGTT-AAAAATTGTCATT----CATATG-AATGTAA-CT---TG------T-AA-TAACTATGTTAAAAA-ATAAAATA----AAGCAA-TCTGAA-TTATGGCAGA
gi|2075 : tATTTA--TAA-T-TAT---TCAG-TT--GCAACATTCAATTTA---CACAC-AA-TGGAAGTT-AAAAATTGTCATT----CATATG-AATGTAA-CT---TG------T-AA-TAACTATGTTAAAAA-ATAAAATA----AAGCAA-TCTGAA-TTATGGCAGA
gi|2086 : tATGTA--TAT-T-TAT---CCAG-TT--GCAACATACAATTTA---CACAC-A--TGGAAGTT-AAAAATTGGCATT----T-AATG-AATGTAA-TT---TG------T-CA-TAACCAAGTTAAGAA-ATACAAT
gi|2080 : ATTTA--TAA-T-TATTATCCAG-TT--GCCAAATACAATTTA---CACAC-A--TGAAAGTT-AAAAAT-GTCGTT----CAAATG-AATGTTA-TT---CA------T-AA-TAATCAATTTAACTA-ATACAATA----AAGCAA-TCTGAA-TTATGGTGGATAATa
gi|2082 : ATTTAAGTAA-A-TAT---CCAG-TT--GCAACATACAATTTA---CACAC-A--TGGAAGTT--AAAATTGTCATTGAAATGAATGCAATATAA-TT---TG------T-AA-TAACCTTTTTAACAG-ATACAATC----AAGCAA-TCTAAA-TTATGGCTAATAAT
gi|2081 : ATTTA--TAA-A-TAC---CCAG-TT--GCAACATACAATTTA---CAGCC-A--CGGAAGTT-GGAAATTATCATT----CAAAT--AATGCAA-TT---TG------T-AA-TAACCAAGTTGAAAA-A-ACAACA----AAGCAA-TCTGAA-TTATGGC
gi|2085 : ATTTA--TAT-T-TAT---CCGT-TT--GCATTATACAATTTT---CATAC-A--CGGAAGTT-AAACATTGTCATT----CAAATG-AATGTAA-TT---TG------G-AA-TAACCAAGTT-CACA-ATACAATTTCAAAAGCAA-TCTGAA-TTATAGCGGATAA
gi|2077 : ATTTG--TAA-T-GTT---CCAC-CT--GTAACATGTAATTTA---CGCAC-A--TAGAAGTT-AGAAGTTGCCACT----TGGG-G-AATGTAA-AT---TG------CCGA-TAAGTAAGTTGAAAT-ATGTAATT----AAGCAA-TCTGAA-TTATGGCGGATAAT
gi|2088 : tATTTG--TAAAT-TA----CAAG-TT--GCAATATCAAAATTA---CACAC-A--TGGAAGTT-AAAACGTGTCGTT----CAAATG-TATGTAA-TT---TG------T-AA-TAATCAAGTTAAAAATACAAAA------AAGCAATAATGAA-TTATGGAAGGTAAT
gi|2089 : ATTTA--TAC-T-TAT---CCAT-TT--GCAACATAAAATTTA---CACAT-A--TGAAAGTT--AAAATTGTCATT----CAAATG-AATGTAA-TT---TT------G-AA-TAA
gi|2087 : ATTTG--TAA-T-ATT---CCAC-CT--GTAACATGTAGTTTA---CGCAC-A--TAGTAGTT-AGATGTTACCACT----CGAGTG-AATTTAA-AT---TG---------A-CGATTA-GTTGAAAT-ATGTAATT----AAGCAA-TCTTAA-TTATGGCGGATAAT
gi|2090 : ATTTG--TAA-T-TTT---CAAC-CT--GCAACATTCATTTTA---CGTAC-A--TAGAAGTT-AATATTTGTCATA----TGAGTG-AA-GTAA-AT---TA------G-CA-TAAGAAAGTTGAAAT-AAGAAATT----TAGTAA-TCTGAA-TTATAGCGAATA
gi|2091 : ATTTG--TAA-T-TAA---CTAG-TT--GCAACATG-AATTT----TACAT-AACTAGAAA-T-AAAAATCGTAGTT----AAAGTG-AATGAAA-TT---TG------T-AA-T
gi|2083 : ATTTG--TAA-A-TAC---CAAG-TT--GCAACATGCATTTTA---CATACAA--TTGA--TTAAAAAACTTTTGTT----TAAGTG-AATGGAA-TT---TG------T-AA-T
gi|2093 : ATTTG--TAA-TTCCT---CCATCATTTGCTACATGCAATTTA---CTCAC-A--CGGAAGTT-AGAAGTTTTCATT----GAAGTG-AATCAAA-TTAACTA------T-AA-T
gi|2092 : ATTTG--TAA-TTCCT---CCATCATTTGCTACATGCAATTTA---CTCAC-A--CGGAAGTT-AGAAGTTTTCATT----GAAGTG-AATCAAA-TTAACTA------T-AA-T
gi|2084 : ATTTG--TAA-T-TTC---CCAC-CT--GTAAAATGTAGTTTAATGCACAT-A----GCAGTT--------GCCACT----TGAGTG-AATTTAA-AT---TGACAATTT-CA-TAAGTAAGTTTAAAT-ATGTAATT----AAGCAA-TATGAA-TTACAGCAGATAA
gi|2094 : TTTA--TAA-T-TTC---CCAC-CT--GCAACATGTATTTTA---TACAC-A--TGAAAGTT-CGAAATTGCCTTT----TGAGTG-AATTAAA-AT---GG------C-GATTGGTGAAGTGGCAAA-ATACAATT----AAGCAA-TATGAA-TTATGGCAAATAGT
gi|2096 : TTTT--TAA-T-TAC---CAAC-AT--GCAACATCCATTTTA---AACAC-C--TGAGAGTA-AGAAAGTGTCATT----TGATTG-AATGGAA-TT---TG------T-AA-T
gi|2095 : TTTT--TAA-T-TAC---CAAC-AT--GCAACATCCATTTTA---AACAC-C--TGAGAGTA-AGAAAGTGTCATT----TGATTG-AATGGAA-TT---TG------T-AA-T
gi|2097 : A--TTA-T-TAT---ACAG-TT--GCAACATACAATTTA---CACAC-A--TGGAAATT-AGGTATTAGCATT----CAATTA-AATGTAA-TT---TG------T-AA-AAACC-----AACAA-ACACAATA----AAGCAA-TCTGAA-TTATGGCGGATAAT
gi|2098 : AGTTTA---CGCAC-A--TAGAAGTT-AGAAAGTTCCACT----TGAGTG-ACTGTAAATT---TG------T-GA-TAAGTAAGTTAAAAT-ATGTAATT----AAGCAA-TCTGAA-TTATGGCGGATAAT
gi|2100 : -ATACAAT-----AAACCA-ATCTAAATTATGGCGGATAAT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2099 ): TTATCATTCAAGTCAATAAATTTGAAATGATCAAGTTGAAACAATGCAATACAGCAATCTGTATTATGACGGATA
Alignments
lowQualScore : 22 1 88888 333 0 1 1 1 1 3 1 2 22 444444 1 555 444444 1 1 2 4 1 55555 2
lowQualScore : .. . ..... ... . . . . . . . . .. ...... . ... ...... . . . . . ..... .
lowQualScore : 55 7 77777 000 5 0 4 7 7 3 7 5 00 666666 6 666 666666 6 6 9 4 3 55555 2
consensus : ATTT--GTAA-TT-----AT---CCAGTTGCAACATGCAATTT-ACACAC-A-TGGAAGTT-AGAAATTGTCATTCGAGTGAATG-----TAA-TT---TG------T-AAT-AACCAAGTTAAAA-AATACAAT----NAAGCAAT-CTGAATTATGGCGGATAAT
Reference ( family-714 ) : ATTT--GTAA-TT-----AT---CCANTTGCAACATGCAATTT-ACACAC-A-TGGAAGTT-AGAAATTGTCATTCGAGTGAATG-----TAA-TT---TG------T-AAT-AACCAAGTTAAAA-AATACAAT----NAAGCAAT-CTGAATTATGGCGGATAAT
gi|2075 : ATTT--ATAA-TT-----AT---TCAGTTGCAACATTCAATTT-ACACAC-AATGGAAGTT-AAAAATTGTCATTCATATGAATG-----TAA-CT---TG------T-AAT-AACTATGTTAAAA-AATAAAAT----AAAGCAAT-CTGAATTATGGCAGA
gi|2076 : tATTT--ATAA-TT-----AT---TCAGTTGCAACATTCAATTT-ACACAC-AATGGAAGTT-AAAAATTGTCATTCATATGAATG-----TAA-CT---TG------T-AAT-AACTATGTTAAAA-AATAAAAT----AAAGCAAT-CTGAATTATGGCAGA
gi|2077 : tATTT--GTAA-TG-----TT---CCACCTGTAACATGTAATTT-ACGCAC-A-TAGAAGTT-AGAAGTTGCCACTTGGG-GAATG-----TAA-AT---TG------CCGAT-AAGTAAGTTGAAA-TATGTAAT----TAAGCAAT-CTGAATTATGGCGGATAAT
gi|2078 : tATTT--ATAA-TC-----AT---CCAGATGCAACATGCAATTT-ACACAT-A-AGGAAGTT-AAAAATTGTCGTTCAAATGGATG-----TAA-TT---TG------T-AAT-AACCAAGTTAAAA-AATAGAAT----AAAGCAAA-CCTAATTATGGCGGATAAT
gi|2079 : ATTT--ATAA-TC-----AT---CCAGATGCAACATGCAATTT-ACACAT-A-TGGAAGTT-AAAAATTGTCGTTTGAACGGATG-----TAA-TT---TG------T-AAT-AACCAAGTTAAAA-AATAGAAT----TAAGCAAA-CCTAATTATGGCGGATAAT
gi|2080 : ATTT--ATAA-TT-----ATTATCCAGTTGCCAAATACAATTT-ACACAC-A-TGAAAGTT-AAAAAT-GTCGTTCAAATGAATG-----TTA-TT---CA------T-AAT-AATCAATTTAACT-AATACAAT----AAAGCAAT-CTGAATTATGGTGGATAAT
gi|2081 : ATTT--ATAA-AT-----AC---CCAGTTGCAACATACAATTT-ACAGCC-A-CGGAAGTT-GGAAATTATCATTCAAAT-AATG-----CAA-TT---TG------T-AAT-AACCAAGTTGAAA-AA-ACAAC----AAAGCAAT-CTGAATTATGGC
gi|2082 : ATTTAAGTAA-AT-----AT---CCAGTTGCAACATACAATTT-ACACAC-A-TGGAAGTT-A-AAATTGTCATTGAAATGAATGCAATATAA-TT---TG------T-AAT-AACCTTTTTAACA-GATACAAT----CAAGCAAT-CTAAATTATGGCTAATAAT
gi|2083 : ATTT--GTAA-AT-----AC---CAAGTTGCAACATGCATTTT-ACATACAA-TTGA--TTAAAAAACTTTTGTTTAAGTGAATG-----GAA-TT---TG------T-AAT-
gi|2084 : ATTT--GTAA-TT-----TC---CCACCTGTAAAATGTAGTTTAATGCAC-A-TAGCAG--------TTGCCACTTGAGTGAATT-----TAA-AT---TGACAATTT-CAT-AAGTAAGTTTAAA-TATGTAAT----TAAGCAAT-ATGAATTACAGCAGATAA
gi|2085 : ATTT--ATAT-TT-----AT---CCGTTTGCATTATACAATTT-TCATAC-A-CGGAAGTT-AAACATTGTCATTCAAATGAATG-----TAA-TT---TG------G-AAT-AACCAAGTT-CAC-AATACAATTTCAAAAGCAAT-CTGAATTATAGCGGATAA
gi|2086 : ATGT--ATAT-TT-----AT---CCAGTTGCAACATACAATTT-ACACAC-A-TGGAAGTT-AAAAATTGGCATTT-AATGAATG-----TAA-TT---TG------T-CAT-AACCAAGTTAAGA-AATACAAT----
gi|2087 : ATTT--GTAA-TA-----TT---CCACCTGTAACATGTAGTTT-ACGCAC-A-TAGTAGTT-AGATGTTACCACTCGAGTGAATT-----TAA-AT---TG---------AC-GATT-AGTTGAAA-TATGTAAT----TAAGCAAT-CTTAATTATGGCGGATAATa
gi|2088 : ATTT--GTAAATT-----A----CAAGTTGCAATATCAAAATT-ACACAC-A-TGGAAGTT-AAAACGTGTCGTTCAAATGTATG-----TAA-TT---TG------T-AAT-AATCAAGTT-AAA-AATACAAA----AAAGCAATAATGAATTATGGAAGGTAAT
gi|2089 : ATTT--ATAC-TT-----AT---CCATTTGCAACATAAAATTT-ACACAT-A-TGAAAGTT-A-AAATTGTCATTCAAATGAATG-----TAA-TT---TT------G-AAT-AA
gi|2090 : ATTT--GTAA-TT-----TT---CAACCTGCAACATTCATTTT-ACGTAC-A-TAGAAGTT-AATATTTGTCATATGAGTGAA-G-----TAA-AT---TA------G-CAT-AAGAAAGTTGAAATAAGA-AAT----TTAGTAAT-CTGAATTATAGCGAATA
gi|2091 : ATTT--GTAA-TT-----AA---CTAGTTGCAACATGAATTTT-ACATAA-C-TAGAAA-T-AAAAATCGTAGTTAAAGTGAATG-----AAA-TT---TG------T-AAT-
gi|2092 : ATTT--GTAA-TTCCTCCAT---C-ATTTGCTACATGCAATTT-ACTCAC-A-CGGAAGTT-AGAAGTTTTCATTGAAGTGAATC-----AAA-TTAACTA------T-AAT-
gi|2093 : ATTT--GTAA-TTCCTCCAT---C-ATTTGCTACATGCAATTT-ACTCAC-A-CGGAAGTT-AGAAGTTTTCATTGAAGTGAATC-----AAA-TTAACTA------T-AAT-
gi|2094 : TTT--ATAA-TT-----TC---CCACCTGCAACATGTATTTT-ATACAC-A-TGAAAGTT-CGAAATTGCCTTTTGAGTGAATT-----AAA-AT---GG------C-GATTGGTGAAGTGGCAA-AATACAAT----TAAGCAAT-ATGAATTATGGCAAATAGT
gi|2095 : TTT--TTAA-TT-----AC---CAACATGCAACATCCATTTT-AAACAC-C-TGAGAGTA-AGAAAGTGTCATTTGATTGAATG-----GAA-TT---TG------T-AAT-
gi|2096 : TTT--TTAA-TT-----AC---CAACATGCAACATCCATTTT-AAACAC-C-TGAGAGTA-AGAAAGTGTCATTTGATTGAATG-----GAA-TT---TG------T-AAT-
gi|2097 : A-TT-----AT---ACAGTTGCAACATACAATTT-ACACAC-A-TGGAAATT-AGGTATTAGCATTCAATTAAATG-----TAA-TT---TG------T-AAA-AACC-----AACA-AACACAAT----AAAGCAAT-CTGAATTATGGCGGATAAT
gi|2098 : attAGTTT-ACGCAC-A-TAGAAGTT-AGAAAGTTCCACTTGAGTGACTG-----TAAATT---TG------T-GAT-AAGTAAGTTAAAA-TATGTAAT----TAAGCAAT-CTGAATTATGGCGGATAAT
gi|2099 : TTATCATTCAAGTCAATA------AA-TT---TG------A-AAT-GATCAAGTTGAAACAATGCAAT----ACAGCAAT-CTGTATTATGACGGATA
gi|2100 : ATACAAT----AAACCAAT-CTAAATTATGGCGGATAAT
Alignments
lowQualScore : 22 1 9999999999 1 3 1 1 1 3 1 2 22 444444 1 555 444444 1 1 2 4 1 55555 2
lowQualScore : .. . .......... . . . . . . . . .. ...... . ... ...... . . . . . ..... .
lowQualScore : 55 7 5555555555 2 5 4 7 7 3 7 5 00 666666 6 666 666666 6 6 9 4 3 55555 2
consensus : ATTT--GTAA-TT-----AT---CCAGT-TGCAACATGCAATTT-ACACAC-A-TGGAAGTT-AGAAATTGTCATTCGAGTGAATG-----TAA-TT---TG------T-AAT-AACCAAGTTAAAA-AATACAAT----NAAGCAAT-CTGAATTATGGCGGATAAT
Reference ( family-714 ) : ATTT--GTAA-TT-----AT---CCAGT-TGCAACATGCAATTT-ACACAC-A-TGGAAGTT-AGAAATTGTCATTCGAGTGAATG-----TAA-TT---TG------T-AAT-AACCAAGTTAAAA-AATACAAT----NAAGCAAT-CTGAATTATGGCGGATAAT
gi|2075 : ATTT--ATAA-TT-----AT---TCAGT-TGCAACATTCAATTT-ACACAC-AATGGAAGTT-AAAAATTGTCATTCATATGAATG-----TAA-CT---TG------T-AAT-AACTATGTTAAAA-AATAAAAT----AAAGCAAT-CTGAATTATGGCAGA
gi|2076 : tATTT--ATAA-TT-----AT---TCAGT-TGCAACATTCAATTT-ACACAC-AATGGAAGTT-AAAAATTGTCATTCATATGAATG-----TAA-CT---TG------T-AAT-AACTATGTTAAAA-AATAAAAT----AAAGCAAT-CTGAATTATGGCAGA
gi|2077 : tATTT--GTAA-TG-----TT---CCACC-TGTAACATGTAATTT-ACGCAC-A-TAGAAGTT-AGAAGTTGCCACTTGGG-GAATG-----TAA-AT---TG------CCGAT-AAGTAAGTTGAAA-TATGTAAT----TAAGCAAT-CTGAATTATGGCGGATAAT
gi|2078 : tATTT--ATAA-TC-----AT---CCAGA-TGCAACATGCAATTT-ACACAT-A-AGGAAGTT-AAAAATTGTCGTTCAAATGGATG-----TAA-TT---TG------T-AAT-AACCAAGTTAAAA-AATAGAAT----AAAGCAAA-CCTAATTATGGCGGATAAT
gi|2079 : ATTT--ATAA-TC-----AT---CCAGA-TGCAACATGCAATTT-ACACAT-A-TGGAAGTT-AAAAATTGTCGTTTGAACGGATG-----TAA-TT---TG------T-AAT-AACCAAGTTAAAA-AATAGAAT----TAAGCAAA-CCTAATTATGGCGGATAAT
gi|2080 : ATTT--ATAA-TT-----ATTATCCAGT-TGCCAAATACAATTT-ACACAC-A-TGAAAGTT-AAAAAT-GTCGTTCAAATGAATG-----TTA-TT---CA------T-AAT-AATCAATTTAACT-AATACAAT----AAAGCAAT-CTGAATTATGGTGGATAAT
gi|2081 : ATTT--ATAA-AT-----AC---CCAGT-TGCAACATACAATTT-ACAGCC-A-CGGAAGTT-GGAAATTATCATTCAAAT-AATG-----CAA-TT---TG------T-AAT-AACCAAGTTGAAA-AA-ACAAC----AAAGCAAT-CTGAATTATGGC
gi|2082 : ATTTAAGTAA-AT-----AT---CCAGT-TGCAACATACAATTT-ACACAC-A-TGGAAGTT-A-AAATTGTCATTGAAATGAATGCAATATAA-TT---TG------T-AAT-AACCTTTTTAACA-GATACAAT----CAAGCAAT-CTAAATTATGGCTAATAAT
gi|2083 : ATTT--GTAA-AT-----AC---CAAGT-TGCAACATGCATTTT-ACATACAA-TTGA--TTAAAAAACTTTTGTTTAAGTGAATG-----GAA-TT---TG------T-AAT-
gi|2084 : ATTT--GTAA-TT-----TC---CCACC-TGTAAAATGTAGTTTAATGCAC-A-TAGCAG--------TTGCCACTTGAGTGAATT-----TAA-AT---TGACAATTT-CAT-AAGTAAGTTTAAA-TATGTAAT----TAAGCAAT-ATGAATTACAGCAGATAA
gi|2085 : ATTT--ATAT-TT-----AT---CCGTT-TGCATTATACAATTT-TCATAC-A-CGGAAGTT-AAACATTGTCATTCAAATGAATG-----TAA-TT---TG------G-AAT-AACCAAGTT-CAC-AATACAATTTCAAAAGCAAT-CTGAATTATAGCGGATAA
gi|2086 : ATGT--ATAT-TT-----AT---CCAGT-TGCAACATACAATTT-ACACAC-A-TGGAAGTT-AAAAATTGGCATTT-AATGAATG-----TAA-TT---TG------T-CAT-AACCAAGTTAAGA-AATACAAT----
gi|2087 : ATTT--GTAA-TA-----TT---CCACC-TGTAACATGTAGTTT-ACGCAC-A-TAGTAGTT-AGATGTTACCACTCGAGTGAATT-----TAA-AT---TG---------AC-GATT-AGTTGAAA-TATGTAAT----TAAGCAAT-CTTAATTATGGCGGATAATa
gi|2088 : ATTT--GTAAATT-----A----CAAGT-TGCAATATCAAAATT-ACACAC-A-TGGAAGTT-AAAACGTGTCGTTCAAATGTATG-----TAA-TT---TG------T-AAT-AATCAAGTT-AAA-AATACAAA----AAAGCAATAATGAATTATGGAAGGTAAT
gi|2089 : ATTT--ATAC-TT-----AT---CCATT-TGCAACATAAAATTT-ACACAT-A-TGAAAGTT-A-AAATTGTCATTCAAATGAATG-----TAA-TT---TT------G-AAT-AA
gi|2090 : ATTT--GTAA-TT-----TT---CAACC-TGCAACATTCATTTT-ACGTAC-A-TAGAAGTT-AATATTTGTCATATGAGTGAA-G-----TAA-AT---TA------G-CAT-AAGAAAGTTGAAATAAGA-AAT----TTAGTAAT-CTGAATTATAGCGAATA
gi|2091 : ATTT--GTAA-TT-----AA---CTAGT-TGCAACATGAATTTT-ACATAA-C-TAGAAA-T-AAAAATCGTAGTTAAAGTGAATG-----AAA-TT---TG------T-AAT-
gi|2092 : ATTT--GTAA-TTCCTCCAT---C-ATT-TGCTACATGCAATTT-ACTCAC-A-CGGAAGTT-AGAAGTTTTCATTGAAGTGAATC-----AAA-TTAACTA------T-AAT-
gi|2093 : ATTT--GTAA-TTCCTCCAT---C-ATT-TGCTACATGCAATTT-ACTCAC-A-CGGAAGTT-AGAAGTTTTCATTGAAGTGAATC-----AAA-TTAACTA------T-AAT-
gi|2094 : TTT--ATAA-TT-----TC---CCACC-TGCAACATGTATTTT-ATACAC-A-TGAAAGTT-CGAAATTGCCTTTTGAGTGAATT-----AAA-AT---GG------C-GATTGGTGAAGTGGCAA-AATACAAT----TAAGCAAT-ATGAATTATGGCAAATAGT
gi|2095 : TTT--TTAA-TT-----A----CCAACATGCAACATCCATTTT-AAACAC-C-TGAGAGTA-AGAAAGTGTCATTTGATTGAATG-----GAA-TT---TG------T-AAT-
gi|2096 : TTT--TTAA-TT-----A----CCAACATGCAACATCCATTTT-AAACAC-C-TGAGAGTA-AGAAAGTGTCATTTGATTGAATG-----GAA-TT---TG------T-AAT-
gi|2097 : A-TT-----AT---ACAGT-TGCAACATACAATTT-ACACAC-A-TGGAAATT-AGGTATTAGCATTCAATTAAATG-----TAA-TT---TG------T-AAA-AACC-----AACA-AACACAAT----AAAGCAAT-CTGAATTATGGCGGATAAT
gi|2098 : attAGTTT-ACGCAC-A-TAGAAGTT-AGAAAGTTCCACTTGAGTGACTG-----TAAATT---TG------T-GAT-AAGTAAGTTAAAA-TATGTAAT----TAAGCAAT-CTGAATTATGGCGGATAAT
gi|2099 : TTATCATTCAAGTCAATA------AA-TT---TG------A-AAT-GATCAAGTTGAAACAATGCAAT----ACAGCAAT-CTGTATTATGACGGATA
gi|2100 : ATACAAT----AAACCAAT-CTAAATTATGGCGGATAAT
Alignments
lowQualScore : 22 1 9999999999 1 3 1 1 1 3 1 2 22 444444 1 555 444444 1 1 2 4 1 55555 2
lowQualScore : .. . .......... . . . . . . . . .. ...... . ... ...... . . . . . ..... .
lowQualScore : 55 7 5555555555 2 5 4 7 7 3 7 5 00 666666 6 666 666666 6 6 9 4 3 55555 2
consensus : ATTT--GTAA-TT-----AT---CCAGT-TGCAACATGCAATTT-ACACAC-A-TGGAAGTT-AGAAATTGTCATTCGAGTGAATG-----TAA-TT---TG------T-AAT-AACCAAGTTAAAA-AATACAAT----NAAGCAAT-CTGAATTATGGCGGATAAT
Reference ( family-714 ) : ATTT--GTAA-TT-----AT---CCAGT-TGCAACATGCAATTT-ACACAC-A-TGGAAGTT-AGAAATTGTCATTCGAGTGAATG-----TAA-TT---TG------T-AAT-AACCAAGTTAAAA-AATACAAT----NAAGCAAT-CTGAATTATGGCGGATAAT
gi|2075 : ATTT--ATAA-TT-----AT---TCAGT-TGCAACATTCAATTT-ACACAC-AATGGAAGTT-AAAAATTGTCATTCATATGAATG-----TAA-CT---TG------T-AAT-AACTATGTTAAAA-AATAAAAT----AAAGCAAT-CTGAATTATGGCAGA
gi|2076 : tATTT--ATAA-TT-----AT---TCAGT-TGCAACATTCAATTT-ACACAC-AATGGAAGTT-AAAAATTGTCATTCATATGAATG-----TAA-CT---TG------T-AAT-AACTATGTTAAAA-AATAAAAT----AAAGCAAT-CTGAATTATGGCAGA
gi|2077 : tATTT--GTAA-TG-----TT---CCACC-TGTAACATGTAATTT-ACGCAC-A-TAGAAGTT-AGAAGTTGCCACTTGGG-GAATG-----TAA-AT---TG------CCGAT-AAGTAAGTTGAAA-TATGTAAT----TAAGCAAT-CTGAATTATGGCGGATAAT
gi|2078 : tATTT--ATAA-TC-----AT---CCAGA-TGCAACATGCAATTT-ACACAT-A-AGGAAGTT-AAAAATTGTCGTTCAAATGGATG-----TAA-TT---TG------T-AAT-AACCAAGTTAAAA-AATAGAAT----AAAGCAAA-CCTAATTATGGCGGATAAT
gi|2079 : ATTT--ATAA-TC-----AT---CCAGA-TGCAACATGCAATTT-ACACAT-A-TGGAAGTT-AAAAATTGTCGTTTGAACGGATG-----TAA-TT---TG------T-AAT-AACCAAGTTAAAA-AATAGAAT----TAAGCAAA-CCTAATTATGGCGGATAAT
gi|2080 : ATTT--ATAA-TT-----ATTATCCAGT-TGCCAAATACAATTT-ACACAC-A-TGAAAGTT-AAAAAT-GTCGTTCAAATGAATG-----TTA-TT---CA------T-AAT-AATCAATTTAACT-AATACAAT----AAAGCAAT-CTGAATTATGGTGGATAAT
gi|2081 : ATTT--ATAA-AT-----AC---CCAGT-TGCAACATACAATTT-ACAGCC-A-CGGAAGTT-GGAAATTATCATTCAAAT-AATG-----CAA-TT---TG------T-AAT-AACCAAGTTGAAA-AA-ACAAC----AAAGCAAT-CTGAATTATGGC
gi|2082 : ATTTAAGTAA-AT-----AT---CCAGT-TGCAACATACAATTT-ACACAC-A-TGGAAGTT-A-AAATTGTCATTGAAATGAATGCAATATAA-TT---TG------T-AAT-AACCTTTTTAACA-GATACAAT----CAAGCAAT-CTAAATTATGGCTAATAAT
gi|2083 : ATTT--GTAA-AT-----AC---CAAGT-TGCAACATGCATTTT-ACATACAA-TTGA--TTAAAAAACTTTTGTTTAAGTGAATG-----GAA-TT---TG------T-AAT-
gi|2084 : ATTT--GTAA-TT-----TC---CCACC-TGTAAAATGTAGTTTAATGCAC-A-TAGCAG--------TTGCCACTTGAGTGAATT-----TAA-AT---TGACAATTT-CAT-AAGTAAGTTTAAA-TATGTAAT----TAAGCAAT-ATGAATTACAGCAGATAA
gi|2085 : ATTT--ATAT-TT-----AT---CCGTT-TGCATTATACAATTT-TCATAC-A-CGGAAGTT-AAACATTGTCATTCAAATGAATG-----TAA-TT---TG------G-AAT-AACCAAGTT-CAC-AATACAATTTCAAAAGCAAT-CTGAATTATAGCGGATAA
gi|2086 : ATGT--ATAT-TT-----AT---CCAGT-TGCAACATACAATTT-ACACAC-A-TGGAAGTT-AAAAATTGGCATTT-AATGAATG-----TAA-TT---TG------T-CAT-AACCAAGTTAAGA-AATACAAT----
gi|2087 : ATTT--GTAA-TA-----TT---CCACC-TGTAACATGTAGTTT-ACGCAC-A-TAGTAGTT-AGATGTTACCACTCGAGTGAATT-----TAA-AT---TG---------AC-GATT-AGTTGAAA-TATGTAAT----TAAGCAAT-CTTAATTATGGCGGATAATa
gi|2088 : ATTT--GTAAATT-----A----CAAGT-TGCAATATCAAAATT-ACACAC-A-TGGAAGTT-AAAACGTGTCGTTCAAATGTATG-----TAA-TT---TG------T-AAT-AATCAAGTT-AAA-AATACAAA----AAAGCAATAATGAATTATGGAAGGTAAT
gi|2089 : ATTT--ATAC-TT-----AT---CCATT-TGCAACATAAAATTT-ACACAT-A-TGAAAGTT-A-AAATTGTCATTCAAATGAATG-----TAA-TT---TT------G-AAT-AA
gi|2090 : ATTT--GTAA-TT-----TT---CAACC-TGCAACATTCATTTT-ACGTAC-A-TAGAAGTT-AATATTTGTCATATGAGTGAA-G-----TAA-AT---TA------G-CAT-AAGAAAGTTGAAATAAGA-AAT----TTAGTAAT-CTGAATTATAGCGAATA
gi|2091 : ATTT--GTAA-TT-----AA---CTAGT-TGCAACATGAATTTT-ACATAA-C-TAGAAA-T-AAAAATCGTAGTTAAAGTGAATG-----AAA-TT---TG------T-AAT-
gi|2092 : ATTT--GTAA-TTCCTCCAT---C-ATT-TGCTACATGCAATTT-ACTCAC-A-CGGAAGTT-AGAAGTTTTCATTGAAGTGAATC-----AAA-TTAACTA------T-AAT-
gi|2093 : ATTT--GTAA-TTCCTCCAT---C-ATT-TGCTACATGCAATTT-ACTCAC-A-CGGAAGTT-AGAAGTTTTCATTGAAGTGAATC-----AAA-TTAACTA------T-AAT-
gi|2094 : TTT--ATAA-TT-----TC---CCACC-TGCAACATGTATTTT-ATACAC-A-TGAAAGTT-CGAAATTGCCTTTTGAGTGAATT-----AAA-AT---GG------C-GATTGGTGAAGTGGCAA-AATACAAT----TAAGCAAT-ATGAATTATGGCAAATAGT
gi|2095 : TTT--TTAA-TT-----A----CCAACATGCAACATCCATTTT-AAACAC-C-TGAGAGTA-AGAAAGTGTCATTTGATTGAATG-----GAA-TT---TG------T-AAT-
gi|2096 : TTT--TTAA-TT-----A----CCAACATGCAACATCCATTTT-AAACAC-C-TGAGAGTA-AGAAAGTGTCATTTGATTGAATG-----GAA-TT---TG------T-AAT-
gi|2097 : A-TT-----AT---ACAGT-TGCAACATACAATTT-ACACAC-A-TGGAAATT-AGGTATTAGCATTCAATTAAATG-----TAA-TT---TG------T-AAA-AACC-----AACA-AACACAAT----AAAGCAAT-CTGAATTATGGCGGATAAT
gi|2098 : attAGTTT-ACGCAC-A-TAGAAGTT-AGAAAGTTCCACTTGAGTGACTG-----TAAATT---TG------T-GAT-AAGTAAGTTAAAA-TATGTAAT----TAAGCAAT-CTGAATTATGGCGGATAAT
gi|2099 : TTATCATTCAAGTCAATA------AA-TT---TG------A-AAT-GATCAAGTTGAAACAATGCAAT----ACAGCAAT-CTGTATTATGACGGATA
gi|2100 : ATACAAT----AAACCAAT-CTAAATTATGGCGGATAAT
blockSeqs : AA A CCTCCAT G A T A A A A A CA CAATAT A AAC ACAATT C T A T A TTCAA A
blockSeqs : . . CCTCCAT C A G . . . . G TG T . AAC . . . G C T A .
blockSeqs : . . ATTAT G . G . . . . A CA T . . . . . A . G T .
blockSeqs : . . AT G . G . . . . A TG T . . . . . A . G A .
blockSeqs : . . TT G . A . . . . A CA T . . . . . A . C T .
blockSeqs : . . AT G . A . . . . G CA T . . . . . G . C A .
blockSeqs : . . AT G . A . . . . A GA C . . . . . A . C A .
blockSeqs : . . AC G . G . . . . A TA G . . . . . T . T C .
blockSeqs : . . AT C . G . . . . A TG T . . . . . A . C T .
blockSeqs : . . AC T . A . . . . G CA T . . . . . G . C T .
blockSeqs : . . TC G . A . . . . A CG T . . . . . G . T A .
blockSeqs : . . AT C . G . . . . A CA T . . . . . G . C T .
blockSeqs : . . AT G . C . . . . A CA T . . . . . A . C T .
blockSeqs : . . TT T . A . . . . G TG T . . . . . A . C A .
blockSeqs : . . AT C . T . . . . G AA T . . . . . G . T T .
blockSeqs : . . TT G . G . . . . G GA A . . . . . . . C A .
blockSeqs : . . AA T . G . . . . G GA A . . . . . . . C A .
blockSeqs : . . TC T . G . . . . G TG A . . . . . .
blockSeqs : . . AT C . G . . . . G TG A . . . . .
blockSeqs : . . A A . C . . . . G TG G . . . . .
blockSeqs : . . A A . C . . . . . CA G . . . . .
blockSeqs : . A G . A . . . . . TG T . . . . .
blockSeqs : . . . . . CA T . . . . .
blockSeqs : T . . . . . .
blockSeqCons :
originalCons : ATTT--GTAA-TT-----AT---CCAGT-TGCAACATGCAATTT-ACACAC-A-TGGAAGTT-AGAAATTGTCATTCGAGTGAATG-----TAA-TT---TG------T-AAT-AACCAAGTTAAAA-AATACAAT----NAAGCAAT-CTGAATTATGGCGGATAAT
finalCons : ATTT--GTAA-TT-----AT---CCAGT-TGCAACATGCAATTT-ACACAC-A-TGGAAGTT-AGAAATTGTCATTCGAGTGAATG-----TAA-TT---TG------T-AAT-AACCAAGTTAAAA-AATACAAT----NAAGCAAT-CTGAATTATGGCGGATAAT
Alignments
lowQualScore : 22 1 9999999999 1 3 1 1 1 3 1 2 22 444444 1 555 444444 1 1 2 4 1 55555 2
lowQualScore : .. . .......... . . . . . . . . .. ...... . ... ...... . . . . . ..... .
lowQualScore : 55 7 5555555555 2 5 4 7 7 3 7 5 00 666666 6 666 666666 6 6 9 4 3 55555 2
consensus : ATTT--GTAA-TT-----AT---CCAGT-TGCAACATGCAATTT-ACACAC-A-TGGAAGTT-AGAAATTGTCATTCGAGTGAATG-----TAA-TT---TG------T-AAT-AACCAAGTTAAAA-AATACAAT----NAAGCAAT-CTGAATTATGGCGGATAAT
Reference ( family-714 ) : ATTT--GTAA-TT-----AT---CCAGT-TGCAACATGCAATTT-ACACAC-A-TGGAAGTT-AGAAATTGTCATTCGAGTGAATG-----TAA-TT---TG------T-AAT-AACCAAGTTAAAA-AATACAAT----NAAGCAAT-CTGAATTATGGCGGATAAT
gi|2075 : ATTT--ATAA-TT-----AT---TCAGT-TGCAACATTCAATTT-ACACAC-AATGGAAGTT-AAAAATTGTCATTCATATGAATG-----TAA-CT---TG------T-AAT-AACTATGTTAAAA-AATAAAAT----AAAGCAAT-CTGAATTATGGCAGA
gi|2076 : tATTT--ATAA-TT-----AT---TCAGT-TGCAACATTCAATTT-ACACAC-AATGGAAGTT-AAAAATTGTCATTCATATGAATG-----TAA-CT---TG------T-AAT-AACTATGTTAAAA-AATAAAAT----AAAGCAAT-CTGAATTATGGCAGA
gi|2077 : tATTT--GTAA-TG-----TT---CCACC-TGTAACATGTAATTT-ACGCAC-A-TAGAAGTT-AGAAGTTGCCACTTGGG-GAATG-----TAA-AT---TG------CCGAT-AAGTAAGTTGAAA-TATGTAAT----TAAGCAAT-CTGAATTATGGCGGATAAT
gi|2078 : tATTT--ATAA-TC-----AT---CCAGA-TGCAACATGCAATTT-ACACAT-A-AGGAAGTT-AAAAATTGTCGTTCAAATGGATG-----TAA-TT---TG------T-AAT-AACCAAGTTAAAA-AATAGAAT----AAAGCAAA-CCTAATTATGGCGGATAAT
gi|2079 : ATTT--ATAA-TC-----AT---CCAGA-TGCAACATGCAATTT-ACACAT-A-TGGAAGTT-AAAAATTGTCGTTTGAACGGATG-----TAA-TT---TG------T-AAT-AACCAAGTTAAAA-AATAGAAT----TAAGCAAA-CCTAATTATGGCGGATAAT
gi|2080 : ATTT--ATAA-TT-----ATTATCCAGT-TGCCAAATACAATTT-ACACAC-A-TGAAAGTT-AAAAAT-GTCGTTCAAATGAATG-----TTA-TT---CA------T-AAT-AATCAATTTAACT-AATACAAT----AAAGCAAT-CTGAATTATGGTGGATAAT
gi|2081 : ATTT--ATAA-AT-----AC---CCAGT-TGCAACATACAATTT-ACAGCC-A-CGGAAGTT-GGAAATTATCATTCAAAT-AATG-----CAA-TT---TG------T-AAT-AACCAAGTTGAAA-AA-ACAAC----AAAGCAAT-CTGAATTATGGC
gi|2082 : ATTTAAGTAA-AT-----AT---CCAGT-TGCAACATACAATTT-ACACAC-A-TGGAAGTT-A-AAATTGTCATTGAAATGAATGCAATATAA-TT---TG------T-AAT-AACCTTTTTAACA-GATACAAT----CAAGCAAT-CTAAATTATGGCTAATAAT
gi|2083 : ATTT--GTAA-AT-----AC---CAAGT-TGCAACATGCATTTT-ACATACAA-TTGA--TTAAAAAACTTTTGTTTAAGTGAATG-----GAA-TT---TG------T-AAT-
gi|2084 : ATTT--GTAA-TT-----TC---CCACC-TGTAAAATGTAGTTTAATGCAC-A-TAGCAG--------TTGCCACTTGAGTGAATT-----TAA-AT---TGACAATTT-CAT-AAGTAAGTTTAAA-TATGTAAT----TAAGCAAT-ATGAATTACAGCAGATAA
gi|2085 : ATTT--ATAT-TT-----AT---CCGTT-TGCATTATACAATTT-TCATAC-A-CGGAAGTT-AAACATTGTCATTCAAATGAATG-----TAA-TT---TG------G-AAT-AACCAAGTT-CAC-AATACAATTTCAAAAGCAAT-CTGAATTATAGCGGATAA
gi|2086 : ATGT--ATAT-TT-----AT---CCAGT-TGCAACATACAATTT-ACACAC-A-TGGAAGTT-AAAAATTGGCATTT-AATGAATG-----TAA-TT---TG------T-CAT-AACCAAGTTAAGA-AATACAAT----
gi|2087 : ATTT--GTAA-TA-----TT---CCACC-TGTAACATGTAGTTT-ACGCAC-A-TAGTAGTT-AGATGTTACCACTCGAGTGAATT-----TAA-AT---TG---------AC-GATT-AGTTGAAA-TATGTAAT----TAAGCAAT-CTTAATTATGGCGGATAATa
gi|2088 : ATTT--GTAAATT-----A----CAAGT-TGCAATATCAAAATT-ACACAC-A-TGGAAGTT-AAAACGTGTCGTTCAAATGTATG-----TAA-TT---TG------T-AAT-AATCAAGTT-AAA-AATACAAA----AAAGCAATAATGAATTATGGAAGGTAAT
gi|2089 : ATTT--ATAC-TT-----AT---CCATT-TGCAACATAAAATTT-ACACAT-A-TGAAAGTT-A-AAATTGTCATTCAAATGAATG-----TAA-TT---TT------G-AAT-AA
gi|2090 : ATTT--GTAA-TT-----TT---CAACC-TGCAACATTCATTTT-ACGTAC-A-TAGAAGTT-AATATTTGTCATATGAGTGAA-G-----TAA-AT---TA------G-CAT-AAGAAAGTTGAAATAAGA-AAT----TTAGTAAT-CTGAATTATAGCGAATA
gi|2091 : ATTT--GTAA-TT-----AA---CTAGT-TGCAACATGAATTTT-ACATAA-C-TAGAAA-T-AAAAATCGTAGTTAAAGTGAATG-----AAA-TT---TG------T-AAT-
gi|2092 : ATTT--GTAA-TTCCTCCAT---C-ATT-TGCTACATGCAATTT-ACTCAC-A-CGGAAGTT-AGAAGTTTTCATTGAAGTGAATC-----AAA-TTAACTA------T-AAT-
gi|2093 : ATTT--GTAA-TTCCTCCAT---C-ATT-TGCTACATGCAATTT-ACTCAC-A-CGGAAGTT-AGAAGTTTTCATTGAAGTGAATC-----AAA-TTAACTA------T-AAT-
gi|2094 : TTT--ATAA-TT-----TC---CCACC-TGCAACATGTATTTT-ATACAC-A-TGAAAGTT-CGAAATTGCCTTTTGAGTGAATT-----AAA-AT---GG------C-GATTGGTGAAGTGGCAA-AATACAAT----TAAGCAAT-ATGAATTATGGCAAATAGT
gi|2095 : TTT--TTAA-TT-----A----CCAACATGCAACATCCATTTT-AAACAC-C-TGAGAGTA-AGAAAGTGTCATTTGATTGAATG-----GAA-TT---TG------T-AAT-
gi|2096 : TTT--TTAA-TT-----A----CCAACATGCAACATCCATTTT-AAACAC-C-TGAGAGTA-AGAAAGTGTCATTTGATTGAATG-----GAA-TT---TG------T-AAT-
gi|2097 : A-TT-----AT---ACAGT-TGCAACATACAATTT-ACACAC-A-TGGAAATT-AGGTATTAGCATTCAATTAAATG-----TAA-TT---TG------T-AAA-AACC-----AACA-AACACAAT----AAAGCAAT-CTGAATTATGGCGGATAAT
gi|2098 : attAGTTT-ACGCAC-A-TAGAAGTT-AGAAAGTTCCACTTGAGTGACTG-----TAAATT---TG------T-GAT-AAGTAAGTTAAAA-TATGTAAT----TAAGCAAT-CTGAATTATGGCGGATAAT
gi|2099 : TTATCATTCAAGTCAATA------AA-TT---TG------A-AAT-GATCAAGTTGAAACAATGCAAT----ACAGCAAT-CTGTATTATGACGGATA
gi|2100 : ATACAAT----AAACCAAT-CTAAATTATGGCGGATAAT