lowQualScore : 6 5 1 77777 1
lowQualScore : . . . ..... .
lowQualScore : 4 1 6 55555 6
consensus : TTCAAAAGTATGGAAGGGAATCC-AA--CGNGACTTGGAACA-TGGATAGAG
Reference ( gi|95658 ) : TTCAAAAGCATGAAAGGGAATCC-AA--TAAGACTTGGAACA-TGGATAGAG
gi|95635 : TTCAAAATTATGAAAGGGAATCC-AA--CGTGACTTGGAAAA-TGGATAGAG
gi|95637 : atcTTCAAAAATATGAAACGAAATCC-AA--TGCGACTTGGAACA-TGGATAG
gi|95655 : atcTTCAAGAGAATAGAAAGGAATCC-AA--GGAGACTTGGAACA-TGGATAGAG
gi|95653 : cTTCAAAAGTATGGAAGGGAATCCCAA--TAAGATTTGGCACA-TAGATAAAG
gi|95644 : ttTTTAAGAACATGGAAGGGAATTC-AA--TATGACTTGGAACA-TGGGTAG
gi|95638 : atcTTCAAAAGGATGGAAGGGAATTC-AG--TAGCACTTGGAACA-TGGATA
gi|95634 : atcTTCAAAAATATGGAAAGGAATCC-AAGGTAA--CTTGGAACA-TGGATAGAG
gi|95654 : attTTCAAAAGTATGGAAGGGAATCT-GA--TGACACTTGTAACA-TGGACAGAG
gi|95656 : tcTTCAAAAGTATGGAAAGGGATCC-AA--CGAGACTTGGAATA-TGGAAAGGG
gi|95642 : cTTTAAAGGTATGGAAGGGAATAC-AG--CAATACTTGAAACA-TGGATAGAG
gi|95650 : atcTTCAAATATATGGAAGGGACTCT-AA--TGAGATTTGGAACA-TGAATAGA
gi|95641 : ataTTCAAAAGTATGGACGGGGATCC-AA--TGCAACTTGGTGCA-TGGATAAAG
gi|95651 : atcTTCAAGATTATAGATGGGAATCC-AA--CAAGACTTCAAACA-TGAATAGAG
gi|95657 : atcTTCAAAAGTACAGAAGGGAATTC-AA--TGTGACTTGGAACA-
gi|95647 : cTTCAAAAGTATGTCAGGGAATCC-AA--TGTGTTTTAGAACATTGGATAGAG
gi|95646 : atcTTCAAAAGTATGGCAAGGAATCC-AA--CGACACTAAGAACA-TGAATAAAG
gi|95639 : atcTTCTAGACTATGGAATGCAATCC-AA--TTGGACTTGGAACA-TGAATAGAG
gi|95636 : atcTTTAGAATTAAGGAACGGAATCC-AA--AGTGACTTGGAACA-TGGATAGAG
gi|95652 : atcTTCAAAAGTGTAGAAAAAAAACT-TA--CGGGACTTGGAACA-TGGATAGAG
gi|95649 : ataTTCAAAAATCTAGAAGGGATTCC-AG--CGTGACTTCGAACA-TGAATAGA
gi|95648 : atcTCAAAAGAATGTAAGGGAATCC-AA--CGAGACTTGGAACA-AGTATGGAG
gi|95640 : atcaTCAAATATATGGAAGGGAATCC-AA--CATGACTTGGAACA-TCAATAGAG
gi|95659 : attcCAAAAGTATGAAAGGGAATCC-AA--CATGACTTTGAACA-CGGATAG
gi|95643 : AAGAGTATGGAAGGGAATCC-AA--TGAGACTTGGAAAA-TGTGTAGA
gi|95645 : atctgtAAAAATATGGAATGGAATTC-AA--CTGGACTTGGAACA-TGTATAGAG
Alignments
lowQualScore : 1 0 1 1
lowQualScore : . . . .
lowQualScore : 5 3 0 5
consensus : TTCAAAAGTATGGAAGGGAAT-CCAACGNGACTTGGAACA-TGGATAGAG
Reference ( family-711 ) : TTCAAAAGTATGGAAGGGAAT-CCAACGNGACTTGGAACA-TGGATAGAG
gi|95634 : TTCAAAAATATGGAAAGGAAT-CCAAGGTAACTTGGAACA-TGGATAGAG
gi|95635 : attTTCAAAATTATGAAAGGGAAT-CCAACGTGACTTGGAAAA-TGGATAGAG
gi|95636 : atcTTTAGAATTAAGGAACGGAAT-CCAAAGTGACTTGGAACA-TGGATAGAG
gi|95637 : atcTTCAAAAATATGAAACGAAAT-CCAATGCGACTTGGAACA-TGGATAG
gi|95638 : atcTTCAAAAGGATGGAAGGGAAT-TCAGTAGCACTTGGAACA-TGGATA
gi|95639 : atcTTCTAGACTATGGAATGCAAT-CCAATTGGACTTGGAACA-TGAATAGAG
gi|95640 : atcTCAAATATATGGAAGGGAAT-CCAACATGACTTGGAACA-TCAATAGAG
gi|95641 : attcTTCAAAAGTATGGACGGGGAT-CCAATGCAACTTGGTGCA-TGGATAAAG
gi|95642 : atcTTTAAAGGTATGGAAGGGAAT-ACAGCAATACTTGAAACA-TGGATAGAG
gi|95643 : atcAAGAGTATGGAAGGGAAT-CCAATGAGACTTGGAAAA-TGTGTAGA
gi|95644 : atctgtTTTAAGAACATGGAAGGGAAT-TCAATATGACTTGGAACA-TGGGTAG
gi|95645 : atcAAAAATATGGAATGGAAT-TCAACTGGACTTGGAACA-TGTATAGAG
gi|95646 : atctttaaTTCAAAAGTATGGCAAGGAAT-CCAACGACACTAAGAACA-TGAATAAAG
gi|95647 : atcTTCAAAAGTATGTCAGGGAAT-CCAATGTGTTTTAGAACATTGGATAGAG
gi|95648 : atcTCAAAAGAATGTAAGGGAAT-CCAACGAGACTTGGAACA-AGTATGGAG
gi|95649 : atcaTTCAAAAATCTAGAAGGGATT-CCAGCGTGACTTCGAACA-TGAATAGA
gi|95650 : atcTTCAAATATATGGAAGGGACT-CTAATGAGATTTGGAACA-TGAATAGA
gi|95651 : ataTTCAAGATTATAGATGGGAAT-CCAACAAGACTTCAAACA-TGAATAGAG
gi|95652 : atcTTCAAAAGTGTAGAAAAAAAA-CTTACGGGACTTGGAACA-TGGATAGAG
gi|95653 : ataTTCAAAAGTATGGAAGGGAATCCCAATAAGATTTGGCACA-TAGATAAAG
gi|95654 : ttTTCAAAAGTATGGAAGGGAAT-CTGATGACACTTGTAACA-TGGACAGAG
gi|95655 : tcTTCAAGAGAATAGAAAGGAAT-CCAAGGAGACTTGGAACA-TGGATAGAG
gi|95656 : cTTCAAAAGTATGGAAAGGGAT-CCAACGAGACTTGGAATA-TGGAAAGGG
gi|95657 : cTTCAAAAGTACAGAAGGGAAT-TCAATGTGACTTGGAACA-
gi|95658 : cTTCAAAAGCATGAAAGGGAAT-CCAATAAGACTTGGAACA-TGGATAGAG
gi|95659 : CAAAAGTATGAAAGGGAAT-CCAACATGACTTTGAACA-CGGATAG
Alignments
lowQualScore : 1 0 1 1
lowQualScore : . . . .
lowQualScore : 5 3 0 5
consensus : TTCAAAAGTATGGAAGGGAAT-CCAACGNGACTTGGAACA-TGGATAGAG
Reference ( family-711 ) : TTCAAAAGTATGGAAGGGAAT-CCAACGNGACTTGGAACA-TGGATAGAG
gi|95634 : TTCAAAAATATGGAAAGGAAT-CCAAGGTAACTTGGAACA-TGGATAGAG
gi|95635 : attTTCAAAATTATGAAAGGGAAT-CCAACGTGACTTGGAAAA-TGGATAGAG
gi|95636 : atcTTTAGAATTAAGGAACGGAAT-CCAAAGTGACTTGGAACA-TGGATAGAG
gi|95637 : atcTTCAAAAATATGAAACGAAAT-CCAATGCGACTTGGAACA-TGGATAG
gi|95638 : atcTTCAAAAGGATGGAAGGGAAT-TCAGTAGCACTTGGAACA-TGGATA
gi|95639 : atcTTCTAGACTATGGAATGCAAT-CCAATTGGACTTGGAACA-TGAATAGAG
gi|95640 : atcTCAAATATATGGAAGGGAAT-CCAACATGACTTGGAACA-TCAATAGAG
gi|95641 : attcTTCAAAAGTATGGACGGGGAT-CCAATGCAACTTGGTGCA-TGGATAAAG
gi|95642 : atcTTTAAAGGTATGGAAGGGAAT-ACAGCAATACTTGAAACA-TGGATAGAG
gi|95643 : atcAAGAGTATGGAAGGGAAT-CCAATGAGACTTGGAAAA-TGTGTAGA
gi|95644 : atctgtTTTAAGAACATGGAAGGGAAT-TCAATATGACTTGGAACA-TGGGTAG
gi|95645 : atcAAAAATATGGAATGGAAT-TCAACTGGACTTGGAACA-TGTATAGAG
gi|95646 : atctttaaTTCAAAAGTATGGCAAGGAAT-CCAACGACACTAAGAACA-TGAATAAAG
gi|95647 : atcTTCAAAAGTATGTCAGGGAAT-CCAATGTGTTTTAGAACATTGGATAGAG
gi|95648 : atcTCAAAAGAATGTAAGGGAAT-CCAACGAGACTTGGAACA-AGTATGGAG
gi|95649 : atcaTTCAAAAATCTAGAAGGGATT-CCAGCGTGACTTCGAACA-TGAATAGA
gi|95650 : atcTTCAAATATATGGAAGGGACT-CTAATGAGATTTGGAACA-TGAATAGA
gi|95651 : ataTTCAAGATTATAGATGGGAAT-CCAACAAGACTTCAAACA-TGAATAGAG
gi|95652 : atcTTCAAAAGTGTAGAAAAAAAA-CTTACGGGACTTGGAACA-TGGATAGAG
gi|95653 : ataTTCAAAAGTATGGAAGGGAATCCCAATAAGATTTGGCACA-TAGATAAAG
gi|95654 : ttTTCAAAAGTATGGAAGGGAAT-CTGATGACACTTGTAACA-TGGACAGAG
gi|95655 : tcTTCAAGAGAATAGAAAGGAAT-CCAAGGAGACTTGGAACA-TGGATAGAG
gi|95656 : cTTCAAAAGTATGGAAAGGGAT-CCAACGAGACTTGGAATA-TGGAAAGGG
gi|95657 : cTTCAAAAGTACAGAAGGGAAT-TCAATGTGACTTGGAACA-
gi|95658 : cTTCAAAAGCATGAAAGGGAAT-CCAATAAGACTTGGAACA-TGGATAGAG
gi|95659 : CAAAAGTATGAAAGGGAAT-CCAACATGACTTTGAACA-CGGATAG
blockSeqs : C T T
blockSeqs : . T .
blockSeqs : . C .
blockSeqs : . G .
blockSeqs : . G .
blockSeqs : . T .
blockSeqs : . C .
blockSeqs : . A .
blockSeqs : . A .
blockSeqs : . T .
blockSeqs : . G .
blockSeqs : . A .
blockSeqs : . T .
blockSeqs : . A .
blockSeqs : . T .
blockSeqs : . A .
blockSeqs : . A .
blockSeqs : . G .
blockSeqs : . A .
blockSeqs : . A .
blockSeqs : . A .
blockSeqs : . A .
blockSeqs : . T .
blockSeqs : . A .
blockSeqs : . T .
blockSeqCons :
originalCons : TTCAAAAGTATGGAAGGGAAT-CCAACGNGACTTGGAACA-TGGATAGAG
finalCons : TTCAAAAGTATGGAAGGGAAT-CCAACGNGACTTGGAACA-TGGATAGAG
Alignments
lowQualScore : 1 0 1 1
lowQualScore : . . . .
lowQualScore : 5 3 0 5
consensus : TTCAAAAGTATGGAAGGGAAT-CCAACGNGACTTGGAACA-TGGATAGAG
Reference ( family-711 ) : TTCAAAAGTATGGAAGGGAAT-CCAACGNGACTTGGAACA-TGGATAGAG
gi|95634 : TTCAAAAATATGGAAAGGAAT-CCAAGGTAACTTGGAACA-TGGATAGAG
gi|95635 : attTTCAAAATTATGAAAGGGAAT-CCAACGTGACTTGGAAAA-TGGATAGAG
gi|95636 : atcTTTAGAATTAAGGAACGGAAT-CCAAAGTGACTTGGAACA-TGGATAGAG
gi|95637 : atcTTCAAAAATATGAAACGAAAT-CCAATGCGACTTGGAACA-TGGATAG
gi|95638 : atcTTCAAAAGGATGGAAGGGAAT-TCAGTAGCACTTGGAACA-TGGATA
gi|95639 : atcTTCTAGACTATGGAATGCAAT-CCAATTGGACTTGGAACA-TGAATAGAG
gi|95640 : atcTCAAATATATGGAAGGGAAT-CCAACATGACTTGGAACA-TCAATAGAG
gi|95641 : attcTTCAAAAGTATGGACGGGGAT-CCAATGCAACTTGGTGCA-TGGATAAAG
gi|95642 : atcTTTAAAGGTATGGAAGGGAAT-ACAGCAATACTTGAAACA-TGGATAGAG
gi|95643 : atcAAGAGTATGGAAGGGAAT-CCAATGAGACTTGGAAAA-TGTGTAGA
gi|95644 : atctgtTTTAAGAACATGGAAGGGAAT-TCAATATGACTTGGAACA-TGGGTAG
gi|95645 : atcAAAAATATGGAATGGAAT-TCAACTGGACTTGGAACA-TGTATAGAG
gi|95646 : atctttaaTTCAAAAGTATGGCAAGGAAT-CCAACGACACTAAGAACA-TGAATAAAG
gi|95647 : atcTTCAAAAGTATGTCAGGGAAT-CCAATGTGTTTTAGAACATTGGATAGAG
gi|95648 : atcTCAAAAGAATGTAAGGGAAT-CCAACGAGACTTGGAACA-AGTATGGAG
gi|95649 : atcaTTCAAAAATCTAGAAGGGATT-CCAGCGTGACTTCGAACA-TGAATAGA
gi|95650 : atcTTCAAATATATGGAAGGGACT-CTAATGAGATTTGGAACA-TGAATAGA
gi|95651 : ataTTCAAGATTATAGATGGGAAT-CCAACAAGACTTCAAACA-TGAATAGAG
gi|95652 : atcTTCAAAAGTGTAGAAAAAAAA-CTTACGGGACTTGGAACA-TGGATAGAG
gi|95653 : ataTTCAAAAGTATGGAAGGGAATCCCAATAAGATTTGGCACA-TAGATAAAG
gi|95654 : ttTTCAAAAGTATGGAAGGGAAT-CTGATGACACTTGTAACA-TGGACAGAG
gi|95655 : tcTTCAAGAGAATAGAAAGGAAT-CCAAGGAGACTTGGAACA-TGGATAGAG
gi|95656 : cTTCAAAAGTATGGAAAGGGAT-CCAACGAGACTTGGAATA-TGGAAAGGG
gi|95657 : cTTCAAAAGTACAGAAGGGAAT-TCAATGTGACTTGGAACA-
gi|95658 : cTTCAAAAGCATGAAAGGGAAT-CCAATAAGACTTGGAACA-TGGATAGAG
gi|95659 : CAAAAGTATGAAAGGGAAT-CCAACATGACTTTGAACA-CGGATAG