lowQualScore : 11111111 1111 11 1
lowQualScore : 4 6 3 11111111 1111 22 666 77 55 4 33 1 5555555 22 5
lowQualScore : . . . ........ .... .. ... .. .. . .. . ....... .. .
lowQualScore : 1 1 0 88888888 3333 55 444 55 00 6 22 9 7777777 55 7
consensus : ATCTTATGAAAATATGTGTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTACAC-N--TGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTTGGCTCGTGCTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATAATAAATACAT
Reference ( gi|94867 ) : ATCTTATGAAAACATGTGTAAGCAACGTAACTATTCGGCAAATACAATGACCTCGAATGGAGAGGACCTGCAC-A--TGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTCGGATCGTGCTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATATTAAATACAT
gi|94868 : ATCTTATGAAAACATGTGTAAGCAACGTAACTATTCGGCAAATACAATGACCTCGAATGGAGAGGACCTGCAC-A--TGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTCGGATCGTGCTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATATTAAATACAT
gi|94869 : ATCTAATGAAAATATGTGTAAACAACGTAACTATTCGGCTAACGTAATGACTTCGATTGGAGAGGGCCTACAC-T--TGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTTGGCTCGTGTTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCTATAATAAATACA
gi|94870 : ATCTTATGAAAATATATGTAAACAACGTAACAATTCGGCAAATGCAATAACCTCGAATGGAGTGGGCCTACAC-A--TGTATCACTTATATACC--A---ACAG--TAT--CGCACGAGTTGGCTCGTGCTCT-ATACCGTTGACTGAACAATACACGTA-------TATGTA--TTCACTTGCTTTAAACTGATAATAAA
gi|94871 : ATCTGATGAAAATATGTGTATACAACGCAGCTATTCGGCAAACGCAATGACCTCGAATGGAG----CCTACAC-T--TGTATCACTTATATACC--G---ACTG--TAC--CGCACGAGTTGA------CTCT-ATACCATTAACTGAACATTACACGTG-------TATGTA--TTCATTTGCTTTAAACCTATAATAAATACAT
gi|94873 : ATCTTATGAAAATATGTGTAAAAAACGTAACAATCCGGCAAACGCAATGAC-TCGAATAGAGAGGGCATACAC-T--TATATCACTTACATACC--G---ACTG--TAT--CGCACGAGTTGACTCGTGCTCT-ATACCCTTGACTGAACATTACAC-------------GTA--TTCATTT-------ACTCATAATAAATACAT
gi|94872 : ATTTTATGAAAAAATGTGTAAACAACTAAACTATTCTGCACATGCAATGGCCCCGAATGGAGAGGGTTACCAC-A--TGTATCACTTATATTAC--G---ACTG--TAT--CGT-TGTATTGACTCGTGCTCT-ATATCCTTGACTGAACATTACACGTA-------TATGCA--TTCATTTGCTTTATACCTATAATAAATACA
gi|94876 : ATCTTGTGAAAATATGTGCAACCAAAGTAACTATTCGGCAAATACATTGACTTCGAATGG--------------------ATCACGTATATACT--G---ACTG--CAT--CACACTAATTAGCTCGTGCTCT-ATAACCTTGACTGAACCTTACCCGTA-------TATATATTTTCATTTGCTTTAAACCCGTAATAAATAAAT
gi|94874 : ATCTGATGAAAATGTGTGTAAACAGCATAGCTATTCGGCAATTGCAATGACCTTAAATGCATACGGCCTACAC-A--CATATCTCTTATTTTCT--G---ACTA--CTT--AGCGAGAGTTGGCTCATGCTCT-AGACCCTCCACTGAACATTACACATACAATGTTTATGTA--TTCATTTGCTTTAAACCTATA
gi|94877 : ATCTTATGAAAATATGTGTAAACAACGTAACTATTCGGCAAATGCAATGACCTCGAATGGAGTGGGCATACAC-T--TGTATCACTTATATACCCTG---ACTGAACAT--TACACGa
gi|94878 : ATCTGATGCAAACATGTGTAAACAACGTGACTATTCG------ACAA------------------A--TGCA--A--TG----ACTTATATACC--C---ACTG--TAT--CGCACAAGTTGGCTCGTGTTCT-ATACCGTTGGCTGAAC----------------------A--TTCATTTGCTTTAAACCCATAATAAATTCATtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatttactttaaacccataatatatacat
gi|94875 : ATCTTATGAAAAC--GTGTAAACAACGTAACTATTCGACAAAAGCAATGACCTCGAATGAAGTGGGCATG
gi|94879 : TCTTATGAAAATATTTGTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAAAGGGCCCACAC-T--TGTATCACTTATATACC--G---ACTG--AAT--CGCACGA----GA-----------------TGACTGAACATTACACGTA-------TATGTA--TGAATTTGCTTTAAACCTATAATAATCACAT
gi|94881 : TCTTACGAAAATATGTG-----------ACTAT-CGACAAATGCAATGACCTCGAATGGAGA--------AC-A--TATATCATTTACATATC--G---ACTG--TAT--CGCACGAGTTGGTTCGTGCTCA-ATACCCTTGACTGAAAATTACACGTA-------TAAATG--TGCATTTGCTTTAAACTCATAATAAATGCAT
gi|94880 : TCTTATGAAAATATGTTTAAACAAAGTTACTATTCGGCAAACGCAATGATCTTAAATGGAGAGGGCCTACAC-T--AGTATCACTTATATACC--G---ACTG--TAT--CG---------GA-----CTCT-ATACCATTGACTGAACATTACA-------------TGTA--TTGATTTACTTTAAACCCATAATAAATACAT
gi|94882 : TATGAAAATATGCGTAAACAACATAACTATTCGGCAAATGCAGTGGCCTCGAATGGAGA---------------------------TAAC--G---ACTG--TAT--CGCACGAGTTGG------CTCT-TTACCTTTTACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTTAACCCATAATAAATACAT
gi|94883 : GAAAAAATGAATAAACGACGTAACTTTTCTGCAAGTGCAA--ATTTT--AT----------TACACCA--CGAATCTCTAATATACG--G---ACTC--TAC--CACACGAGTTGAA-CGGAC----ATACCC---------CATTA--------------ATGCA--TTCATTTGCTTTTAAC
gi|94884 : TATAAACAAGGTAACTATTCGGCAAACACAATGACCTCGAATGGAGTGGGCCTACAC-T--TGTATAACTTATATACC--G---AC----------------GTTGGCTTGTGCTCT-TTACTCCTGTCTGAACATTACACGTA-------TATGTG--ATGATTTGCTTTAAACCTATAATAAATACATtata
gi|94887 : CGGCAAATGCAATAACTTCGAATGGTGAGAATTTATAC-ACCTGTACC--TTATATACT--GGTCACTGATTATAAAACACGAGCCTACTTGTGCAAT-CTACCCTTCACTGAATTTTCC---------------GCA--TTCCTTTAC-TTACACCCAAGATAAATACAT
gi|94886 : CGGCAAATGCAATAACTTCGAATGGTGAGAATTTATAC-ACCTGTACC--TTATATACT--GGTCACTGATTATAAAACACGAGCCTACTTGTGCAAT-CTACCCTTCACTGAATTTTCC---------------GCA--TTCCTTTAC-TTACACCCAAGATAAATACAT
gi|94888 : GCAAATGCAATGACCTCGAAATGAGAGGGACTACAC-A--TGTATCACTTATA------A---ACTG--TAT--TGCACGAATTTTCTCGTGCTCC-AT-C-----ACTGAACAGTACACGTA-------TATCTA--ATCATTTGCTTTAAACTCATGATAAAAACAT
gi|94889 : CTCGAA--AAGCGGGCCTACAC-T--TGTATCACT-ATATACC--G---ACTG--TAT--CGCACGAGTTGGCTCGTGCTCT-ATACCATTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATAATAAATACAT
gi|94890 : ATATACC--G---ACTG--TAT--CGCACGAGATGGCTCGTGCTCT-ATACCTTTGACTGAACATTACACGTA-------TATGGA--TTCATTTGCTTTAAACTCATAATAAATACAT
gi|94891 : ATACT--G---ACTG--CAC--TGCTAGAGTTGGCTCGTGATCTTATATCCTTGACTGAACATTACACCTA-------TA
gi|94892 : CTTCACTGAACATTACACGTA-------TATGTA--TTCA-TTGCCTTAAACATATAATAAATACAT
gi|94877 : GTG-------TGTGTG--TTCATTTACTTTAAACCCATAATATATACAT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|94885 ): TGTAAACAACGGATTCAAGAGCAAATAGAAAGGAGAGTGTCTACAAACCTATTTTTTATGTACTTACCATATCGTGGGAGTTGGCTCGTGCGCT
Alignments
lowQualScore : 2 1 0 55 1 1 2 1 22 555 66 44 1 0 5555555 22
lowQualScore : . . . .. . . . . .. ... .. .. . . ....... ..
lowQualScore : 5 8 5 00 8 8 9 2 33 888 99 66 7 5 4444444 44
consensus : ATCTTATGAAAATATGTGTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTA--C-A-CNTGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTTGGCTCGTGCTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATAATAAATACAT
Reference ( family-706 ) : ATCTTATGAAAATATGTGTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTA--C-A-CNTGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTTGGCTCGTGCTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATAATAAATACAT
gi|94867 : ATCTTATGAAAACATGTGTAAGCAACGTAACTATTCGGCAAATACAATGACCTCGAATGGAGAGGACCTG--C-A-CATGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTCGGATCGTGCTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATATTAAATACAT
gi|94868 : ATCTTATGAAAACATGTGTAAGCAACGTAACTATTCGGCAAATACAATGACCTCGAATGGAGAGGACCTG--C-A-CATGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTCGGATCGTGCTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATATTAAATACAT
gi|94869 : ATCTAATGAAAATATGTGTAAACAACGTAACTATTCGGCTAACGTAATGACTTCGATTGGAGAGGGCCTA--C-A-CTTGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTTGGCTCGTGTTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCTATAATAAATACA
gi|94870 : ATCTTATGAAAATATATGTAAACAACGTAACAATTCGGCAAATGCAATAACCTCGAATGGAGTGGGCCTA--C-A-CATGTATCACTTATATACC--A---ACAG--TAT--CGCACGAGTTGGCTCGTGCTCT-ATACCGTTGACTGAACAATACACGTA-------TATGTA--TTCACTTGCTTTAAACTGATAATAAA
gi|94871 : ATCTGATGAAAATATGTGTATACAACGCAGCTATTCGGCAAACGCAATGACCTCGAATGGAG----CCTA--C-A-CTTGTATCACTTATATACC--G---ACTG--TAC--CGCACGAGTTGACTC------T-ATACCATTAACTGAACATTACACGTG-------TATGTA--TTCATTTGCTTTAAACCTATAATAAATACAT
gi|94872 : ATTTTATGAAAAAATGTGTAAACAACTAAACTATTCTGCACATGCAATGGCCCCGAATGGAGAGGGT-TA--CCA-CATGTATCACTTATATTAC--G---ACTG--TAT--CGT-TGTATTGACTCGTGCTCT-ATATCCTTGACTGAACATTACACGTA-------TATGCA--TTCATTTGCTTTATACCTATAATAAATACA
gi|94873 : ATCTTATGAAAATATGTGTAAAAAACGTAACAATCCGGCAAACGCAATGAC-TCGAATAGAGAGGGCATA--C-A-CTTATATCACTTACATACC--G---ACTG--TAT--CGCACGAGTTGACTCGTGCTCT-ATACCCTTGACTGAACATTACAC-------------GTA--TTCATTT-------ACTCATAATAAATACAT
gi|94874 : ATCTGATGAAAATGTGTGTAAACAGCATAGCTATTCGGCAATTGCAATGACCTTAAATGCATACGGCCTA--C-A-CACATATCTCTTATTTTCT--G---ACTA--CTT--AGCGAGAGTTGGCTCATGCTCT-AGACCCTCCACTGAACATTACACATACAATGTTTATGTA--TTCATTTGCTTTAAACCTATAA
gi|94875 : ATCTTATGAAAAC--GTGTAAACAACGTAACTATTCGACAAAAGCAATGACCTCGAATGAAGTGGGC
gi|94876 : ATCTTGTGAAAATATGTGCAACCAAAGTAACTATTCGGCAAATACATTGACTTCGAATGGA---------------------TCACGTATATACT--G---ACTG--CAT--CACACTAATTAGCTCGTGCTCT-ATAACCTTGACTGAACCTTACCCGTA-------TATATATTTTCATTTGCTTTAAACCCGTAATAAATAAATatg
gi|94877 : ATCTTATGAAAATATGTGTAAACAACGTAACTATTCGGCAAATGCAATGACCTCGAATGGAGTGGGCATA--C-A-CTTGTATCACTTATATACCCTG---ACTGAACAT--TACACG
gi|94877 : GTG-------TGTGTG--TTCATTTACTTTAAACCCATAATATATACATtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatttactttaaacccataatatatacat
gi|94878 : atcttatgaaaatatgtgtaaacaacgtaactattcggcaaatgcaatgacctcgaatggagtgggcatacacttgtatcacttatataccctgactgaacattacacgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATCTGATGCAAACATGTGTAAACAACGTGACTATTCGACAAATGCAATGACTT---ATATA-----CCCA--C-----TGTAT-----------------------------CGCACAAGTTGGCTCGTGTTCT-ATACCGTTGGCTGAAC----------------------A--TTCATTTGCTTTAAACCCATAATAAATTCAT
gi|94879 : TCTTATGAAAATATTTGTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAAAGGGCCCA--C-A-CTTGTATCACTTATATACC--G---ACTG--AAT--CGCACGAG---------------A------TGACTGAACATTACACGTA-------TATGTA--TGAATTTGCTTTAAACCTATAATAATCACAT
gi|94880 : TCTTATGAAAATATGTTTAAACAAAGTTACTATTCGGCAAACGCAATGATCTTAAATGGAGAGGGCCTA--C-A-CTAGTATCACTTATATACC--G---ACTG--TAT--CG---GA-----------CTCT-ATACCATTGACTGAACATTAC-------------ATGTA--TTGATTTACTTTAAACCCATAATAAATACAT
gi|94881 : TCTTACGAAAATATGTG-----------ACTAT-CGACAAATGCAATGACCTCGAATGGAGA-----------A-CATATATCATTTACATATC--G---ACTG--TAT--CGCACGAGTTGGTTCGTGCTCA-ATACCCTTGACTGAAAATTACACGTA-------TAAATG--TGCATTTGCTTTAAACTCATAATAAATGCAT
gi|94882 : TATGAAAATATGCGTAAACAACATAACTATTCGGCAAATGCAGTGGCCTCGAATGGAGA----------------------------TAAC--G---ACTG--TAT--CGCACGAGTTGGCTCTT-------TACCTTTTACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTTAACCCATAATAAATACAT
gi|94883 : GAAAAAATGAATAAACGACGTAACTTTTCTGCAAGTGCAA--ATTTT--AT----------TA--C-ACCACGAATCTCTAATATACG--G---ACTC--TAC--CACACGAGTTGAA-CGGAC----ATACCC---------CATTA--------------ATGCA--TTCATTTGCTTTTAAC
gi|94884 : TATAAACAAGGTAACTATTCGGCAAACACAATGACCTCGAATGGAGTGGGCCTA--C-A-CTTGTATAACTTATATACC--G---AC----------------GTTGGCTTGTGCTCT-TTACTCCTGTCTGAACATTACACGTA-------TATGTG--ATGATTTGCTTTAAACCTATAATAAATACATtata
gi|94885 : TGTAAACAACGGA----TTC---AAGAGCAA--A--TAGAAAGGAGAGTGTCTA--C-A-AACCTATTTTTTATGTACT--T---ACCA--TAT--CGTGGGAGTTGGCTCGTGCGCT-
gi|94886 : CGGCAAATGCAATAACTTCGAATGGTGAGAATTTATAC-A-CCTGTACC--TTATATACT--GGTCACTGATTATAAAACACGAGCCTACTTGTGCAAT-CTACCCTTCACTGAATTTTCC---------------GCA--TTCCTTTAC-TTACACCCAAGATAAATACAT
gi|94887 : CGGCAAATGCAATAACTTCGAATGGTGAGAATTTATAC-A-CCTGTACC--TTATATACT--GGTCACTGATTATAAAACACGAGCCTACTTGTGCAAT-CTACCCTTCACTGAATTTTCC---------------GCA--TTCCTTTAC-TTACACCCAAGATAAATACAT
gi|94888 : GCAAATGCAATGACCTCGAAATGAGAGGGACTA--C-A-CATGTATCACTTATA------A---ACTG--TAT--TGCACGAATTTTCTCGTGCTCC-AT---C---ACTGAACAGTACACGTA-------TATCTA--ATCATTTGCTTTAAACTCATGATAAAAACAT
gi|94889 : CTCGAA--AAGCGGGCCTA--C-A-CTTGTATCACT-ATATACC--G---ACTG--TAT--CGCACGAGTTGGCTCGTGCTCT-ATACCATTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATAATAAATACAT
gi|94890 : ATATACC--G---ACTG--TAT--CGCACGAGATGGCTCGTGCTCT-ATACCTTTGACTGAACATTACACGTA-------TATGGA--TTCATTTGCTTTAAACTCATAATAAATACAT
gi|94891 : ATACT--G---ACTG--CAC--TGCTAGAGTTGGCTCGTGATCTTATATCCTTGACTGAACATTACACCTA-------TA
gi|94892 : CTTCACTGAACATTACACGTA-------TATGTA--TTCA-TTGCCTTAAACATATAATAAATACAT
Alignments
lowQualScore : 2 1 0 55 1 1 2 1 22 555 66 44 1 0 5555555 22
lowQualScore : . . . .. . . . . .. ... .. .. . . ....... ..
lowQualScore : 5 8 5 00 8 8 9 2 33 888 99 66 7 5 4444444 44
consensus : ATCTTATGAAAATATGTGTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTA--C-A-CNTGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTTGGCTCGTGCTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATAATAAATACAT
Reference ( family-706 ) : ATCTTATGAAAATATGTGTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTA--C-A-CNTGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTTGGCTCGTGCTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATAATAAATACAT
gi|94867 : ATCTTATGAAAACATGTGTAAGCAACGTAACTATTCGGCAAATACAATGACCTCGAATGGAGAGGACCTG--C-A-CATGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTCGGATCGTGCTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATATTAAATACAT
gi|94868 : ATCTTATGAAAACATGTGTAAGCAACGTAACTATTCGGCAAATACAATGACCTCGAATGGAGAGGACCTG--C-A-CATGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTCGGATCGTGCTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATATTAAATACAT
gi|94869 : ATCTAATGAAAATATGTGTAAACAACGTAACTATTCGGCTAACGTAATGACTTCGATTGGAGAGGGCCTA--C-A-CTTGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTTGGCTCGTGTTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCTATAATAAATACA
gi|94870 : ATCTTATGAAAATATATGTAAACAACGTAACAATTCGGCAAATGCAATAACCTCGAATGGAGTGGGCCTA--C-A-CATGTATCACTTATATACC--A---ACAG--TAT--CGCACGAGTTGGCTCGTGCTCT-ATACCGTTGACTGAACAATACACGTA-------TATGTA--TTCACTTGCTTTAAACTGATAATAAA
gi|94871 : ATCTGATGAAAATATGTGTATACAACGCAGCTATTCGGCAAACGCAATGACCTCGAATGGAG----CCTA--C-A-CTTGTATCACTTATATACC--G---ACTG--TAC--CGCACGAGTTGACTC------T-ATACCATTAACTGAACATTACACGTG-------TATGTA--TTCATTTGCTTTAAACCTATAATAAATACAT
gi|94872 : ATTTTATGAAAAAATGTGTAAACAACTAAACTATTCTGCACATGCAATGGCCCCGAATGGAGAGGGT-TA--CCA-CATGTATCACTTATATTAC--G---ACTG--TAT--CGT-TGTATTGACTCGTGCTCT-ATATCCTTGACTGAACATTACACGTA-------TATGCA--TTCATTTGCTTTATACCTATAATAAATACA
gi|94873 : ATCTTATGAAAATATGTGTAAAAAACGTAACAATCCGGCAAACGCAATGAC-TCGAATAGAGAGGGCATA--C-A-CTTATATCACTTACATACC--G---ACTG--TAT--CGCACGAGTTGACTCGTGCTCT-ATACCCTTGACTGAACATTACAC-------------GTA--TTCATTT-------ACTCATAATAAATACAT
gi|94874 : ATCTGATGAAAATGTGTGTAAACAGCATAGCTATTCGGCAATTGCAATGACCTTAAATGCATACGGCCTA--C-A-CACATATCTCTTATTTTCT--G---ACTA--CTT--AGCGAGAGTTGGCTCATGCTCT-AGACCCTCCACTGAACATTACACATACAATGTTTATGTA--TTCATTTGCTTTAAACCTATAA
gi|94875 : ATCTTATGAAAAC--GTGTAAACAACGTAACTATTCGACAAAAGCAATGACCTCGAATGAAGTGGGC
gi|94876 : ATCTTGTGAAAATATGTGCAACCAAAGTAACTATTCGGCAAATACATTGACTTCGAATGGA---------------------TCACGTATATACT--G---ACTG--CAT--CACACTAATTAGCTCGTGCTCT-ATAACCTTGACTGAACCTTACCCGTA-------TATATATTTTCATTTGCTTTAAACCCGTAATAAATAAATatg
gi|94877 : ATCTTATGAAAATATGTGTAAACAACGTAACTATTCGGCAAATGCAATGACCTCGAATGGAGTGGGCATA--C-A-CTTGTATCACTTATATACCCTG---ACTGAACAT--TACACG
gi|94877 : GTG-------TGTGTG--TTCATTTACTTTAAACCCATAATATATACATtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatttactttaaacccataatatatacat
gi|94878 : atcttatgaaaatatgtgtaaacaacgtaactattcggcaaatgcaatgacctcgaatggagtgggcatacacttgtatcacttatataccctgactgaacattacacgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATCTGATGCAAACATGTGTAAACAACGTGACTATTCGACAAATGCAATGACTT---ATATA-----CCCA--C-----TGTAT-----------------------------CGCACAAGTTGGCTCGTGTTCT-ATACCGTTGGCTGAAC----------------------A--TTCATTTGCTTTAAACCCATAATAAATTCAT
gi|94879 : TCTTATGAAAATATTTGTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAAAGGGCCCA--C-A-CTTGTATCACTTATATACC--G---ACTG--AAT--CGCACGAG---------------A------TGACTGAACATTACACGTA-------TATGTA--TGAATTTGCTTTAAACCTATAATAATCACAT
gi|94880 : TCTTATGAAAATATGTTTAAACAAAGTTACTATTCGGCAAACGCAATGATCTTAAATGGAGAGGGCCTA--C-A-CTAGTATCACTTATATACC--G---ACTG--TAT--CG---GA-----------CTCT-ATACCATTGACTGAACATTAC-------------ATGTA--TTGATTTACTTTAAACCCATAATAAATACAT
gi|94881 : TCTTACGAAAATATGTG-----------ACTAT-CGACAAATGCAATGACCTCGAATGGAGA-----------A-CATATATCATTTACATATC--G---ACTG--TAT--CGCACGAGTTGGTTCGTGCTCA-ATACCCTTGACTGAAAATTACACGTA-------TAAATG--TGCATTTGCTTTAAACTCATAATAAATGCAT
gi|94882 : TATGAAAATATGCGTAAACAACATAACTATTCGGCAAATGCAGTGGCCTCGAATGGAGA----------------------------TAAC--G---ACTG--TAT--CGCACGAGTTGGCTCTT-------TACCTTTTACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTTAACCCATAATAAATACAT
gi|94883 : GAAAAAATGAATAAACGACGTAACTTTTCTGCAAGTGCAA--ATTTT--AT----------TA--C-ACCACGAATCTCTAATATACG--G---ACTC--TAC--CACACGAGTTGAA-CGGAC----ATACCC---------CATTA--------------ATGCA--TTCATTTGCTTTTAAC
gi|94884 : TATAAACAAGGTAACTATTCGGCAAACACAATGACCTCGAATGGAGTGGGCCTA--C-A-CTTGTATAACTTATATACC--G---AC----------------GTTGGCTTGTGCTCT-TTACTCCTGTCTGAACATTACACGTA-------TATGTG--ATGATTTGCTTTAAACCTATAATAAATACATtata
gi|94885 : TGTAAACAACGGA----TTC---AAGAGCAA--A--TAGAAAGGAGAGTGTCTA--C-A-AACCTATTTTTTATGTACT--T---ACCA--TAT--CGTGGGAGTTGGCTCGTGCGCT-
gi|94886 : CGGCAAATGCAATAACTTCGAATGGTGAGAATTTATAC-A-CCTGTACC--TTATATACT--GGTCACTGATTATAAAACACGAGCCTACTTGTGCAAT-CTACCCTTCACTGAATTTTCC---------------GCA--TTCCTTTAC-TTACACCCAAGATAAATACAT
gi|94887 : CGGCAAATGCAATAACTTCGAATGGTGAGAATTTATAC-A-CCTGTACC--TTATATACT--GGTCACTGATTATAAAACACGAGCCTACTTGTGCAAT-CTACCCTTCACTGAATTTTCC---------------GCA--TTCCTTTAC-TTACACCCAAGATAAATACAT
gi|94888 : GCAAATGCAATGACCTCGAAATGAGAGGGACTA--C-A-CATGTATCACTTATA------A---ACTG--TAT--TGCACGAATTTTCTCGTGCTCC-AT---C---ACTGAACAGTACACGTA-------TATCTA--ATCATTTGCTTTAAACTCATGATAAAAACAT
gi|94889 : CTCGAA--AAGCGGGCCTA--C-A-CTTGTATCACT-ATATACC--G---ACTG--TAT--CGCACGAGTTGGCTCGTGCTCT-ATACCATTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATAATAAATACAT
gi|94890 : ATATACC--G---ACTG--TAT--CGCACGAGATGGCTCGTGCTCT-ATACCTTTGACTGAACATTACACGTA-------TATGGA--TTCATTTGCTTTAAACTCATAATAAATACAT
gi|94891 : ATACT--G---ACTG--CAC--TGCTAGAGTTGGCTCGTGATCTTATATCCTTGACTGAACATTACACCTA-------TA
gi|94892 : CTTCACTGAACATTACACGTA-------TATGTA--TTCA-TTGCCTTAAACATATAATAAATACAT
blockSeqs : T A TA C C A A CT GTC AA AA T CAATGTT TT
blockSeqs : C A TA . . T A . GTC AT AA . . .
blockSeqs : T T . . . A A . . AT . . . .
blockSeqs : C A . . . T A . . . . . . .
blockSeqs : T A . . . A A . . . . . . .
blockSeqs : C A . . . T A . . . . . . .
blockSeqs : T T . . . A T . . . . . . .
blockSeqs : A T . . . T A . . . . . . .
blockSeqs : T A . . . T A . . . . . . .
blockSeqs : T A . . . T A . . . . . . .
blockSeqs : T A . . . A A . . . . . . .
blockSeqs : C A . . . A A . . . . . . .
blockSeqs : C T . . . T T . . . . . . .
blockSeqs : T A . . . A A . . . . . . .
blockSeqs : T A . . . C T . . . . . . .
blockSeqs : T A . . . C A . . . . . . .
blockSeqs : C A . . . A A . . . . . . .
blockSeqs : A C . . . T . . . . . . . .
blockSeqs : T . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : ATCTTATGAAAATATGTGTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTA--C-A-CNTGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTTGGCTCGTGCTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATAATAAATACAT
finalCons : ATCTTATGAAAATATGTGTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTA--C-A-CNTGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTTGGCTCGTGCTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATAATAAATACAT
Alignments
lowQualScore : 2 1 0 55 1 1 2 1 22 555 66 44 1 0 5555555 22
lowQualScore : . . . .. . . . . .. ... .. .. . . ....... ..
lowQualScore : 5 8 5 00 8 8 9 2 33 888 99 66 7 5 4444444 44
consensus : ATCTTATGAAAATATGTGTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTA--C-A-CNTGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTTGGCTCGTGCTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATAATAAATACAT
Reference ( family-706 ) : ATCTTATGAAAATATGTGTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAGAGGGCCTA--C-A-CNTGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTTGGCTCGTGCTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATAATAAATACAT
gi|94867 : ATCTTATGAAAACATGTGTAAGCAACGTAACTATTCGGCAAATACAATGACCTCGAATGGAGAGGACCTG--C-A-CATGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTCGGATCGTGCTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATATTAAATACAT
gi|94868 : ATCTTATGAAAACATGTGTAAGCAACGTAACTATTCGGCAAATACAATGACCTCGAATGGAGAGGACCTG--C-A-CATGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTCGGATCGTGCTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATATTAAATACAT
gi|94869 : ATCTAATGAAAATATGTGTAAACAACGTAACTATTCGGCTAACGTAATGACTTCGATTGGAGAGGGCCTA--C-A-CTTGTATCACTTATATACC--G---ACTG--TAT--CGCACGAGTTGGCTCGTGTTCT-ATACCCTTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCTATAATAAATACA
gi|94870 : ATCTTATGAAAATATATGTAAACAACGTAACAATTCGGCAAATGCAATAACCTCGAATGGAGTGGGCCTA--C-A-CATGTATCACTTATATACC--A---ACAG--TAT--CGCACGAGTTGGCTCGTGCTCT-ATACCGTTGACTGAACAATACACGTA-------TATGTA--TTCACTTGCTTTAAACTGATAATAAA
gi|94871 : ATCTGATGAAAATATGTGTATACAACGCAGCTATTCGGCAAACGCAATGACCTCGAATGGAG----CCTA--C-A-CTTGTATCACTTATATACC--G---ACTG--TAC--CGCACGAGTTGACTC------T-ATACCATTAACTGAACATTACACGTG-------TATGTA--TTCATTTGCTTTAAACCTATAATAAATACAT
gi|94872 : ATTTTATGAAAAAATGTGTAAACAACTAAACTATTCTGCACATGCAATGGCCCCGAATGGAGAGGGT-TA--CCA-CATGTATCACTTATATTAC--G---ACTG--TAT--CGT-TGTATTGACTCGTGCTCT-ATATCCTTGACTGAACATTACACGTA-------TATGCA--TTCATTTGCTTTATACCTATAATAAATACA
gi|94873 : ATCTTATGAAAATATGTGTAAAAAACGTAACAATCCGGCAAACGCAATGAC-TCGAATAGAGAGGGCATA--C-A-CTTATATCACTTACATACC--G---ACTG--TAT--CGCACGAGTTGACTCGTGCTCT-ATACCCTTGACTGAACATTACAC-------------GTA--TTCATTT-------ACTCATAATAAATACAT
gi|94874 : ATCTGATGAAAATGTGTGTAAACAGCATAGCTATTCGGCAATTGCAATGACCTTAAATGCATACGGCCTA--C-A-CACATATCTCTTATTTTCT--G---ACTA--CTT--AGCGAGAGTTGGCTCATGCTCT-AGACCCTCCACTGAACATTACACATACAATGTTTATGTA--TTCATTTGCTTTAAACCTATAA
gi|94875 : ATCTTATGAAAAC--GTGTAAACAACGTAACTATTCGACAAAAGCAATGACCTCGAATGAAGTGGGC
gi|94876 : ATCTTGTGAAAATATGTGCAACCAAAGTAACTATTCGGCAAATACATTGACTTCGAATGGA---------------------TCACGTATATACT--G---ACTG--CAT--CACACTAATTAGCTCGTGCTCT-ATAACCTTGACTGAACCTTACCCGTA-------TATATATTTTCATTTGCTTTAAACCCGTAATAAATAAATatg
gi|94877 : ATCTTATGAAAATATGTGTAAACAACGTAACTATTCGGCAAATGCAATGACCTCGAATGGAGTGGGCATA--C-A-CTTGTATCACTTATATACCCTG---ACTGAACAT--TACACG
gi|94877 : GTG-------TGTGTG--TTCATTTACTTTAAACCCATAATATATACATtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatttactttaaacccataatatatacat
gi|94878 : atcttatgaaaatatgtgtaaacaacgtaactattcggcaaatgcaatgacctcgaatggagtgggcatacacttgtatcacttatataccctgactgaacattacacgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATCTGATGCAAACATGTGTAAACAACGTGACTATTCGACAAATGCAATGACTT---ATATA-----CCCA--C-----TGTAT-----------------------------CGCACAAGTTGGCTCGTGTTCT-ATACCGTTGGCTGAAC----------------------A--TTCATTTGCTTTAAACCCATAATAAATTCAT
gi|94879 : TCTTATGAAAATATTTGTAAACAACGTAACTATTCGGCAAACGCAATGACCTCGAATGGAAAGGGCCCA--C-A-CTTGTATCACTTATATACC--G---ACTG--AAT--CGCACGAG---------------A------TGACTGAACATTACACGTA-------TATGTA--TGAATTTGCTTTAAACCTATAATAATCACAT
gi|94880 : TCTTATGAAAATATGTTTAAACAAAGTTACTATTCGGCAAACGCAATGATCTTAAATGGAGAGGGCCTA--C-A-CTAGTATCACTTATATACC--G---ACTG--TAT--CG---GA-----------CTCT-ATACCATTGACTGAACATTAC-------------ATGTA--TTGATTTACTTTAAACCCATAATAAATACAT
gi|94881 : TCTTACGAAAATATGTG-----------ACTAT-CGACAAATGCAATGACCTCGAATGGAGA-----------A-CATATATCATTTACATATC--G---ACTG--TAT--CGCACGAGTTGGTTCGTGCTCA-ATACCCTTGACTGAAAATTACACGTA-------TAAATG--TGCATTTGCTTTAAACTCATAATAAATGCAT
gi|94882 : TATGAAAATATGCGTAAACAACATAACTATTCGGCAAATGCAGTGGCCTCGAATGGAGA----------------------------TAAC--G---ACTG--TAT--CGCACGAGTTGGCTCTT-------TACCTTTTACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTTAACCCATAATAAATACAT
gi|94883 : GAAAAAATGAATAAACGACGTAACTTTTCTGCAAGTGCAA--ATTTT--AT----------TA--C-ACCACGAATCTCTAATATACG--G---ACTC--TAC--CACACGAGTTGAA-CGGAC----ATACCC---------CATTA--------------ATGCA--TTCATTTGCTTTTAAC
gi|94884 : TATAAACAAGGTAACTATTCGGCAAACACAATGACCTCGAATGGAGTGGGCCTA--C-A-CTTGTATAACTTATATACC--G---AC----------------GTTGGCTTGTGCTCT-TTACTCCTGTCTGAACATTACACGTA-------TATGTG--ATGATTTGCTTTAAACCTATAATAAATACATtata
gi|94885 : TGTAAACAACGGA----TTC---AAGAGCAA--A--TAGAAAGGAGAGTGTCTA--C-A-AACCTATTTTTTATGTACT--T---ACCA--TAT--CGTGGGAGTTGGCTCGTGCGCT-
gi|94886 : CGGCAAATGCAATAACTTCGAATGGTGAGAATTTATAC-A-CCTGTACC--TTATATACT--GGTCACTGATTATAAAACACGAGCCTACTTGTGCAAT-CTACCCTTCACTGAATTTTCC---------------GCA--TTCCTTTAC-TTACACCCAAGATAAATACAT
gi|94887 : CGGCAAATGCAATAACTTCGAATGGTGAGAATTTATAC-A-CCTGTACC--TTATATACT--GGTCACTGATTATAAAACACGAGCCTACTTGTGCAAT-CTACCCTTCACTGAATTTTCC---------------GCA--TTCCTTTAC-TTACACCCAAGATAAATACAT
gi|94888 : GCAAATGCAATGACCTCGAAATGAGAGGGACTA--C-A-CATGTATCACTTATA------A---ACTG--TAT--TGCACGAATTTTCTCGTGCTCC-AT---C---ACTGAACAGTACACGTA-------TATCTA--ATCATTTGCTTTAAACTCATGATAAAAACAT
gi|94889 : CTCGAA--AAGCGGGCCTA--C-A-CTTGTATCACT-ATATACC--G---ACTG--TAT--CGCACGAGTTGGCTCGTGCTCT-ATACCATTGACTGAACATTACACGTA-------TATGTA--TTCATTTGCTTTAAACCCATAATAAATACAT
gi|94890 : ATATACC--G---ACTG--TAT--CGCACGAGATGGCTCGTGCTCT-ATACCTTTGACTGAACATTACACGTA-------TATGGA--TTCATTTGCTTTAAACTCATAATAAATACAT
gi|94891 : ATACT--G---ACTG--CAC--TGCTAGAGTTGGCTCGTGATCTTATATCCTTGACTGAACATTACACCTA-------TA
gi|94892 : CTTCACTGAACATTACACGTA-------TATGTA--TTCA-TTGCCTTAAACATATAATAAATACAT