lowQualScore : 1
lowQualScore : 3 66 1 1 1 3 22 22 1 9 22 1
lowQualScore : . .. . . . . .. .. . . .. .
lowQualScore : 0 44 6 6 6 2 22 22 6 0 22 6
consensus : GTCATTTGATTAAAT-AG-TGTGACA-AAA-A-C--GCA--AAAT-TTGAGGGTCATG--G-AAAACCCTG
Reference ( gi|46316 ) : GTCATTTCATTAAAT-AG-TGTGACA-AAA-A-C--GCA--AAAT-TTGAAGGTCATG--G-AAAACCCTG
gi|46317 : GTCATTTGATAAAAT-AG-TGTGACA-AAA-A-T--GCA--AAAT-TTGAGGATCATG--G-AAAACCCTG
gi|46319 : GTCAATTTATTAAAT-AG-TGTGTCA-AAA-A-T--ACA--AAAT-TCGAGGGTCATG--G-AAAACCCTG
gi|46320 : GTCATTTGATTAAAA-TG-TGTGACAGAAA-A-C--ACA--AAAT-TTGAGGGTCATG--G-AACACCCT
gi|46322 : GTCATTTTATTGAGT-AG-TGTGACA-AAA-A-C--GCA--AACT-CTAAGGGTCACA--G-AAAACCATG
gi|46324 : GTCATTTGAT-------G-TGTGACA-AAA-G-C--GTA--AAAT-TTTAGGGTCATG--G-AAAATCCT
gi|46321 : GTCATTTGAATAAA--AG-TGTGACA-AAA-A-C--ACA--AAAT-GTGAGGGTCAAT--G-AAAACCATG
gi|46325 : GTCATTTAATTAAAT-AG-TGGAACA-AAA-C-C--ACA--CAAT-CTGACGGTATTG--G-AAAACCCTG
gi|46323 : GTCGTTTGATTAA-T-AA-TCTGACA-AAA-A-C--ACA--AAAT-TTGATGGTCATC--G-AAAAACC
gi|46326 : GTCATTTAATTAAAT-AA-TGTGATA-AAA-A-CAAACA--AAA--ATGAGGGTCATC--A-AAAACTCTG
gi|46327 : GTTAATTGATCAAAC-AG-TGTGACA-AAA-AAT--GTA--AAAT-TTTAGTGTAATG--G-AAAACCCTG
gi|46318 : GTCATTTGATTAAAT-AG-CGTGACA-AAA-A-T--GCA--AAA---------TCATA--G-AAAAC
gi|46328 : TCATTTGATTAAAT-AG-TGTGACA-AAA-T-C--ACA--AAGT-TTGAGGATCATG--G-AAAATCC
gi|46330 : TTATTTGATTAAAA-AG-TATGACA-AAA-A-C--GCC--AAAT-TTGATGGACATGTTGCAAAACTCTG
gi|46329 : TCTTTTGATTAAAT-AG-TGTGACA-TAA-A-A--ATA--AAAA-TCGAGGGTCATT--G-AAAACTCTG
gi|46332 : CATCTGATTAAAA-AG-TGTCACA-AAA-A-C--GTA--AAAC-TTGAGGGACATG--G-AAAACCCTG
gi|46333 : CATTTGATTAAAA-AG-TGTGGCA-AAA-A-C--ACA--AAAT-TTTCGTGACATG--G-AAAACCCTG
gi|46334 : CATTCAATTAAAA-AA-TGTGACA-AAA-A----ACATCAAAT-TTGAGGGACATG--G-AAAACCCTG
gi|46335 : CATTTGATTAAAA-AAATGTGACA-AAA-A-C--ACT--TAGT-TTTAGGGGCATG--G-AAAACCCTG
gi|46336 : CATTTGAATAGAA-AG-AGTGGCA-AAA-A-T--GCA--AAAT-TTGAGAGATATG--A-AAAACACTG
gi|46337 : TTTGATTAAA---A-TGTGTCA-AAA-A-T--ACA--AAAT-TTGAGGGACATG--G-AAAACCCTG
gi|46339 : TTTAATCAAAT-AG-TGAGACA-AAATA-C--GCA--ATAT-TTGAGGGTCATG--C-AAAA
gi|46331 : TCATTTAATTAG-TGT--CA-AAA-A-C--ACA--AAAT-TATAGGGTTGTG--G-AAAGTCCTG
gi|46340 : AAAA-AG-TAAGACA-AAA-A-C--ACA--AAAT-CTGAGGGTCATG--G-AAAACTC
gi|46341 : AT-AA-TGTGACA-AAA-A-C--GCA--AAAT-TTGAGGGTCATG--G-AAAATCCTG
gi|46338 : T-AG-TGTGACA-TAA-ATC--ACA--AAATGTTGG-GGTCATG--G-AAAACCC
Alignments
lowQualScore : 5 444444 1 1 1 4 22 1 22 1
lowQualScore : . ...... . . . . .. . .. .
lowQualScore : 2 444444 5 5 5 6 11 5 11 5
consensus : GTCATTTGATTAAATA------G-TGTGACA-AAA-A-C--GCAAAAT-TTGAGGGTCATG--G-AAAACCCTG
Reference ( family-705 ) : GTCATTTGATTAAATA------G-TGTGACA-AAA-A-C--GCAAAAT-TTGAGGGTCATG--G-AAAACCCTG
gi|46316 : GTCATTTCATTAAATA------G-TGTGACA-AAA-A-C--GCAAAAT-TTGAAGGTCATG--G-AAAACCCTG
gi|46317 : GTCATTTGATAAAATA------G-TGTGACA-AAA-A-T--GCAAAAT-TTGAGGATCATG--G-AAAACCCTG
gi|46318 : GTCATTTGATTAAATA------G-CGTGACA-AAA-A-T--GCAAAA---------TCATA--G-AAAAC
gi|46319 : GTCAATTTATTAAATA------G-TGTGTCA-AAA-A-T--ACAAAAT-TCGAGGGTCATG--G-AAAACCCTG
gi|46320 : GTCATTTGATTAAAAT------G-TGTGACAGAAA-A-C--ACAAAAT-TTGAGGGTCATG--G-AACACCCT
gi|46321 : GTCATTTGAATAAA-A------G-TGTGACA-AAA-A-C--ACAAAAT-GTGAGGGTCAAT--G-AAAACCATG
gi|46322 : GTCATTTTATTGAGTA------G-TGTGACA-AAA-A-C--GCAAACT-CTAAGGGTCACA--G-AAAACCATG
gi|46323 : GTCGTTTGATTAA-TA------A-TCTGACA-AAA-A-C--ACAAAAT-TTGATGGTCATC--G-AAAAACC
gi|46324 : GTCATTTGAT------------G-TGTGACA-AAA-G-C--GTAAAAT-TTTAGGGTCATG--G-AAAATCCT
gi|46325 : GTCATTTAATTAAATA------G-TGGAACA-AAA-C-C--ACACAAT-CTGACGGTATTG--G-AAAACCCTG
gi|46326 : GTCATTTAATTAAATA------A-TGTGATA-AAA-A-CAAACAAAA--ATGAGGGTCATC--A-AAAACTCTG
gi|46327 : GTTAATTGATCAAACA------G-TGTGACA-AAA-AAT--GTAAAAT-TTTAGTGTAATG--G-AAAACCCTG
gi|46328 : TCATTTGATTAAATA------G-TGTGACA-AAA-T-C--ACAAAGT-TTGAGGATCATG--G-AAAATCC
gi|46329 : TCTTTTGATTAAATA------G-TGTGACA-TAA-A-A--ATAAAAA-TCGAGGGTCATT--G-AAAACTCTG
gi|46330 : TTATTTGATTAAAAA------G-TATGACA-AAA-A-C--GCCAAAT-TTGATGGACATGTTGCAAAACTCTG
gi|46331 : TCATTTAATTA----------G-TGT--CA-AAA-A-C--ACAAAAT-TATAGGGTTGTG--G-AAAGTCCTG
gi|46332 : CATCTGATTAAAAA------G-TGTCACA-AAA-A-C--GTAAAAC-TTGAGGGACATG--G-AAAACCCTG
gi|46333 : CATTTGATTAAAAA------G-TGTGGCA-AAA-A-C--ACAAAAT-TTTCGTGACATG--G-AAAACCCTG
gi|46334 : CATTCAATTAAAAA------A-TGTGACA-AAA-AAC--ATCAAAT-TTGAGGGACATG--G-AAAACCCTG
gi|46335 : CATTTGATTAAAAA------AATGTGACA-AAA-A-C--ACTTAGT-TTTAGGGGCATG--G-AAAACCCTG
gi|46336 : CATTTGAATAGAAA------G-AGTGGCA-AAA-A-T--GCAAAAT-TTGAGAGATATG--A-AAAACACTG
gi|46337 : TTTGATTAAA--------A-TGTGTCA-AAA-A-T--ACAAAAT-TTGAGGGACATG--G-AAAACCCTG
gi|46338 : TTTGATTTAATACACGTAG-TGTGACA-TAA-ATC--ACAAAATGTTG-GGGTCATG--G-AAAACCC
gi|46339 : TTTAATCAAATA------G-TGAGACA-AAATA-C--GCAATAT-TTGAGGGTCATG--C-AAAA
gi|46340 : AAAAA------G-TAAGACA-AAA-A-C--ACAAAAT-CTGAGGGTCATG--G-AAAACTC
gi|46341 : ATA------A-TGTGACA-AAA-A-C--GCAAAAT-TTGAGGGTCATG--G-AAAATCCTG
Alignments
lowQualScore : 5 444444 1 1 1 4 22 1 22 1
lowQualScore : . ...... . . . . .. . .. .
lowQualScore : 2 444444 5 5 5 6 11 5 11 5
consensus : GTCATTTGATTAAATA------G-TGTGACA-AAA-A-C--GCAAAAT-TTGAGGGTCATG--G-AAAACCCTG
Reference ( family-705 ) : GTCATTTGATTAAATA------G-TGTGACA-AAA-A-C--GCAAAAT-TTGAGGGTCATG--G-AAAACCCTG
gi|46316 : GTCATTTCATTAAATA------G-TGTGACA-AAA-A-C--GCAAAAT-TTGAAGGTCATG--G-AAAACCCTG
gi|46317 : GTCATTTGATAAAATA------G-TGTGACA-AAA-A-T--GCAAAAT-TTGAGGATCATG--G-AAAACCCTG
gi|46318 : GTCATTTGATTAAATA------G-CGTGACA-AAA-A-T--GCAAAA---------TCATA--G-AAAAC
gi|46319 : GTCAATTTATTAAATA------G-TGTGTCA-AAA-A-T--ACAAAAT-TCGAGGGTCATG--G-AAAACCCTG
gi|46320 : GTCATTTGATTAAAAT------G-TGTGACAGAAA-A-C--ACAAAAT-TTGAGGGTCATG--G-AACACCCT
gi|46321 : GTCATTTGAATAAA-A------G-TGTGACA-AAA-A-C--ACAAAAT-GTGAGGGTCAAT--G-AAAACCATG
gi|46322 : GTCATTTTATTGAGTA------G-TGTGACA-AAA-A-C--GCAAACT-CTAAGGGTCACA--G-AAAACCATG
gi|46323 : GTCGTTTGATTAA-TA------A-TCTGACA-AAA-A-C--ACAAAAT-TTGATGGTCATC--G-AAAAACC
gi|46324 : GTCATTTGAT------------G-TGTGACA-AAA-G-C--GTAAAAT-TTTAGGGTCATG--G-AAAATCCT
gi|46325 : GTCATTTAATTAAATA------G-TGGAACA-AAA-C-C--ACACAAT-CTGACGGTATTG--G-AAAACCCTG
gi|46326 : GTCATTTAATTAAATA------A-TGTGATA-AAA-A-CAAACAAAA--ATGAGGGTCATC--A-AAAACTCTG
gi|46327 : GTTAATTGATCAAACA------G-TGTGACA-AAA-AAT--GTAAAAT-TTTAGTGTAATG--G-AAAACCCTG
gi|46328 : TCATTTGATTAAATA------G-TGTGACA-AAA-T-C--ACAAAGT-TTGAGGATCATG--G-AAAATCC
gi|46329 : TCTTTTGATTAAATA------G-TGTGACA-TAA-A-A--ATAAAAA-TCGAGGGTCATT--G-AAAACTCTG
gi|46330 : TTATTTGATTAAAAA------G-TATGACA-AAA-A-C--GCCAAAT-TTGATGGACATGTTGCAAAACTCTG
gi|46331 : TCATTTAATTA----------G-TGT--CA-AAA-A-C--ACAAAAT-TATAGGGTTGTG--G-AAAGTCCTG
gi|46332 : CATCTGATTAAAAA------G-TGTCACA-AAA-A-C--GTAAAAC-TTGAGGGACATG--G-AAAACCCTG
gi|46333 : CATTTGATTAAAAA------G-TGTGGCA-AAA-A-C--ACAAAAT-TTTCGTGACATG--G-AAAACCCTG
gi|46334 : CATTCAATTAAAAA------A-TGTGACA-AAA-AAC--ATCAAAT-TTGAGGGACATG--G-AAAACCCTG
gi|46335 : CATTTGATTAAAAA------AATGTGACA-AAA-A-C--ACTTAGT-TTTAGGGGCATG--G-AAAACCCTG
gi|46336 : CATTTGAATAGAAA------G-AGTGGCA-AAA-A-T--GCAAAAT-TTGAGAGATATG--A-AAAACACTG
gi|46337 : TTTGATTAAA--------A-TGTGTCA-AAA-A-T--ACAAAAT-TTGAGGGACATG--G-AAAACCCTG
gi|46338 : TTTGATTTAATACACGTAG-TGTGACA-TAA-ATC--ACAAAATGTTG-GGGTCATG--G-AAAACCC
gi|46339 : TTTAATCAAATA------G-TGAGACA-AAATA-C--GCAATAT-TTGAGGGTCATG--C-AAAA
gi|46340 : AAAAA------G-TAAGACA-AAA-A-C--ACAAAAT-CTGAGGGTCATG--G-AAAACTC
gi|46341 : ATA------A-TGTGACA-AAA-A-C--GCAAAAT-TTGAGGGTCATG--G-AAAATCCTG
blockSeqs : T CACGTA A G T A AA G TT C
blockSeqs : T . . . . A . . . .
blockSeqs : T . . . . T . . . .
blockSeqs : A . . . . . . . . .
blockSeqs : T . . . . . . . . .
blockSeqs : T . . . . . . . . .
blockSeqs : T . . . . . . . . .
blockSeqs : T . . . . . . . . .
blockSeqs : C . . . . . . . . .
blockSeqs : T . . . . . . . . .
blockSeqs : T . . . . . . . . .
blockSeqs : A . . . . . . . . .
blockSeqs : A . . . . . . . . .
blockSeqs : A . . . . . . . . .
blockSeqs : A . . . . . . . . .
blockSeqs : A . . . . . . . . .
blockSeqs : A . . . . . . . . .
blockSeqs : T . . . . . . . . .
blockSeqs : T . . . . . . . . .
blockSeqs : A . . . . . . . . .
blockSeqs : T . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons :
originalCons : GTCATTTGATTAAATA------G-TGTGACA-AAA-A-C--GCAAAAT-TTGAGGGTCATG--G-AAAACCCTG
finalCons : GTCATTTGATTAAATA------G-TGTGACA-AAA-A-C--GCAAAAT-TTGAGGGTCATG--G-AAAACCCTG
Alignments
lowQualScore : 5 444444 1 1 1 4 22 1 22 1
lowQualScore : . ...... . . . . .. . .. .
lowQualScore : 2 444444 5 5 5 6 11 5 11 5
consensus : GTCATTTGATTAAATA------G-TGTGACA-AAA-A-C--GCAAAAT-TTGAGGGTCATG--G-AAAACCCTG
Reference ( family-705 ) : GTCATTTGATTAAATA------G-TGTGACA-AAA-A-C--GCAAAAT-TTGAGGGTCATG--G-AAAACCCTG
gi|46316 : GTCATTTCATTAAATA------G-TGTGACA-AAA-A-C--GCAAAAT-TTGAAGGTCATG--G-AAAACCCTG
gi|46317 : GTCATTTGATAAAATA------G-TGTGACA-AAA-A-T--GCAAAAT-TTGAGGATCATG--G-AAAACCCTG
gi|46318 : GTCATTTGATTAAATA------G-CGTGACA-AAA-A-T--GCAAAA---------TCATA--G-AAAAC
gi|46319 : GTCAATTTATTAAATA------G-TGTGTCA-AAA-A-T--ACAAAAT-TCGAGGGTCATG--G-AAAACCCTG
gi|46320 : GTCATTTGATTAAAAT------G-TGTGACAGAAA-A-C--ACAAAAT-TTGAGGGTCATG--G-AACACCCT
gi|46321 : GTCATTTGAATAAA-A------G-TGTGACA-AAA-A-C--ACAAAAT-GTGAGGGTCAAT--G-AAAACCATG
gi|46322 : GTCATTTTATTGAGTA------G-TGTGACA-AAA-A-C--GCAAACT-CTAAGGGTCACA--G-AAAACCATG
gi|46323 : GTCGTTTGATTAA-TA------A-TCTGACA-AAA-A-C--ACAAAAT-TTGATGGTCATC--G-AAAAACC
gi|46324 : GTCATTTGAT------------G-TGTGACA-AAA-G-C--GTAAAAT-TTTAGGGTCATG--G-AAAATCCT
gi|46325 : GTCATTTAATTAAATA------G-TGGAACA-AAA-C-C--ACACAAT-CTGACGGTATTG--G-AAAACCCTG
gi|46326 : GTCATTTAATTAAATA------A-TGTGATA-AAA-A-CAAACAAAA--ATGAGGGTCATC--A-AAAACTCTG
gi|46327 : GTTAATTGATCAAACA------G-TGTGACA-AAA-AAT--GTAAAAT-TTTAGTGTAATG--G-AAAACCCTG
gi|46328 : TCATTTGATTAAATA------G-TGTGACA-AAA-T-C--ACAAAGT-TTGAGGATCATG--G-AAAATCC
gi|46329 : TCTTTTGATTAAATA------G-TGTGACA-TAA-A-A--ATAAAAA-TCGAGGGTCATT--G-AAAACTCTG
gi|46330 : TTATTTGATTAAAAA------G-TATGACA-AAA-A-C--GCCAAAT-TTGATGGACATGTTGCAAAACTCTG
gi|46331 : TCATTTAATTA----------G-TGT--CA-AAA-A-C--ACAAAAT-TATAGGGTTGTG--G-AAAGTCCTG
gi|46332 : CATCTGATTAAAAA------G-TGTCACA-AAA-A-C--GTAAAAC-TTGAGGGACATG--G-AAAACCCTG
gi|46333 : CATTTGATTAAAAA------G-TGTGGCA-AAA-A-C--ACAAAAT-TTTCGTGACATG--G-AAAACCCTG
gi|46334 : CATTCAATTAAAAA------A-TGTGACA-AAA-AAC--ATCAAAT-TTGAGGGACATG--G-AAAACCCTG
gi|46335 : CATTTGATTAAAAA------AATGTGACA-AAA-A-C--ACTTAGT-TTTAGGGGCATG--G-AAAACCCTG
gi|46336 : CATTTGAATAGAAA------G-AGTGGCA-AAA-A-T--GCAAAAT-TTGAGAGATATG--A-AAAACACTG
gi|46337 : TTTGATTAAA--------A-TGTGTCA-AAA-A-T--ACAAAAT-TTGAGGGACATG--G-AAAACCCTG
gi|46338 : TTTGATTTAATACACGTAG-TGTGACA-TAA-ATC--ACAAAATGTTG-GGGTCATG--G-AAAACCC
gi|46339 : TTTAATCAAATA------G-TGAGACA-AAATA-C--GCAATAT-TTGAGGGTCATG--C-AAAA
gi|46340 : AAAAA------G-TAAGACA-AAA-A-C--ACAAAAT-CTGAGGGTCATG--G-AAAACTC
gi|46341 : ATA------A-TGTGACA-AAA-A-C--GCAAAAT-TTGAGGGTCATG--G-AAAATCCTG