lowQualScore : 11111 4444444 11 1111 1
lowQualScore : 22 2 22 00000 55555 22 666666 333 22 2 2 2 333 4 333 777 3333333 11 55 0 2 333 5555 5
lowQualScore : .. . .. ..... ..... .. ...... ... .. . . . ... . ... ... ....... .. .. . . ... .... .
lowQualScore : 88 0 88 66666 00000 99 111111 777 66 6 0 5 555 3 777 888 8888888 33 99 1 1 777 9999 1
consensus : AATGCCGGGTATAATACGCAGCCCC--AA-A--TG----CAA-----TGCAAAT--C------T---GCGA--ACATTATAGAGGA-ATTCCGATTG---ATTATCAACA---A---GAAGCG---AAGACACTCACGC-TCAGTC-C---CA---TTCTGGCAGGTATTTCCTGCATCAGAATTTAACATTGTTTACAT
Reference ( gi|104146 ) : AATGCCGGGTATAATACGCAGCCCC--AA-A--TA----CAA-----TGCAAAT--C------T---GCGA--ACATTATAGAGGA-ATTCTGATTG---ATTGTCAACA---A---GA---G---AAGACACTCGTGT-TCAGTC-C---CT---TTCTGGCAGGTATTTCCTGCTTCAGAATTTAACATTGTTTACAT
gi|104149 : AATGCTGGGTATAATATGCAGCCCC--AA-A--TA----CAA-----TGCAAAT--C------T---GCAA--ACATTATAGAGGA-ATTCTGATTG---ATTGTCAACA---AGAGGA---G---AAGACACTCGTGT-TCAGTC-C---CT---TTCTGGCTGGTATTTCCTGCTTCAGAATTTAACATTATTTACAT
gi|104148 : AATGCCGGGTATAATACGCAGCCCA--AA-A--TG----CAA-----TGCAAAT--C------T---GCGA--ACATAATAGACGA-ATTCCAATTG---ACTATCAACA---A---GAGG-G---AAGACACTCACAC-TCAGTC-C---CA---TTCTTGCAGGTATTTCCTGCATCAGAATTTAACATTGTTTACAT
gi|104147 : AATGCTGGGTATAATACGCAGCCCC--AA-A--TG----CAA-----TGCAAAT--C------T---GC-ATTACTTTATAGAAGA-ATTGTGATTG---ATTATCAACA---A---GA---AGCAAAGACACTCACGC-TCAGTC-C---CA---TTCTGGCAGGTATTTACTGCATCAGAATTTAACATTGTTTACAT
gi|104151 : AATGCCGGATATAATACGCAGCCCC--AA-A--TG----CAA-----TGCAAAT--A------T---GCGA--ACATTTTAAAAGA-ATTCAGATTG---GTTACCAACA---G---GAAGCG---AATACACTCACGT-ACAGTC-C---CA---TTCTGGCAGGAATTTCCTGCATCAAAAGTTAACATTGTTTACAT
gi|104152 : AATGACAGGTATAATATGCAGCCTC--AA-A--TG----CAG-----TGCAAA---------------------CATTATAGAGGA-ATTCTGATTG---ATTATCAACA---A---GA---AGCAAAGACACTCACGC-TCAGTC-T---CA---TTCTGGCAGGTATTTCCTGCATCAGAATTTAATATTGTTTACAT
gi|104150 : AATGCCGGGTATAATACCCAGCCCC--AA-A--TG----CAG-----TTCAAAT--C------T---GTAA--ACACTATAGAGGT-ATTCCGATTG---CTTATCAACA---A---GAAGCG---AAGACACTCACGC-TCAGTT-C---CA---TTCTGGCAGGTATTTCCTGCATCCAAAGTTAACATTGTTTCCAT
gi|104153 : AATGCCGGGTATATTAGGCAGCCCC--AA-A--TG----CAA-----TGCAAAT--C------T---TCGA--ACATTATAGAAGA-CTTCCGATTG---ATTATCAACA---A---G----------------CATGC-TCTGTC-C---CT---TTCCGGCAGGTATTTCATGCATCAGAATTAAACATTGTTT
gi|104154 : AATGCCATGTATAATGTGCAGCCCA--AA-A--TG----CAA-----TGAAAAT--C------T---GTGA--ACATTATAGAGGG-ATTCTGATTG---ATTATCAACA---A---TAAACG---AAGCCACTTACGC-TCAGTC-T---CA---TTCTGGCAGA-A---------TCAGAATTTAACATTATTTACAT
gi|104155 : AGTGCGGGGTATAAATCGTAGCCCT--AA-AACTATCCTCAAATCTATGCAAAT--A------T---GCGA--ACATTATAGAGGA-ATTCCGATCG---ATTATCAACA---A---GAAACG---AACACACCCACG----A--C-C---CA---TTCTGGTAGATATTTCCTGCATCAGAATTTAACATTATTAACAT
gi|104156 : AATGCGGGGCATAAAATGCAGTCCC--AGCA--T-----CAA-----TGCAAAT--C------TCTAG-GG--ACAATGCAGAGGA-ATTCCGATTA---AT
gi|104157 : AATGCAGAGTATAAAACGCAACACC--AA-C--TG----CGA-----TGCAAAT--C------T--------------------GA-ATTTCAAATG---ATTATCAACA---atca
gi|104158 : TGCTGGGTATATTAAGCAGT-----------TA---------------AAAC--C------T---GCGA--ATATTATAGAAGA-ATTTCGATTG---CTTATCAACA---A---GAAGCG---AAGACACCTACGC-TCA-TCAC---CA---TTCTGGCAAGTAATTCCTGCATCAGAATTTAACATTGTTTACAT
gi|104159 : TGCCGGGTATAATACGCAGACCC--AA-A--TG----CAG-----TGCA
gi|104160 : TGCCGGGTATAATACGCAGACCC--AA-A--TG----CAG-----TGTA
gi|104161 : CGGATATAATACGCAGCCCA--AA-A--TG----CAA-----TGCAAAT--C------T---GCGA--ACATTATAGA
gi|104162 : GGCTACAAAACACATCTCCTCAG-C--TC----CAA-----TGCAAAT--C------A---GCGA--ATGT-------GACATTCTGATT----ATCAGCAAGA---A---GC---G---AAAATGCTCACAT-TCAGAC-C---CA---TTCCAACAGGTATTTCCTGCATCATAATTTAACATTATTT
gi|104163 : GGTATAATACGTATCCCC--AA-G--TG----CAG-----TTCAAAC--C------T---GTAA--ATGTTATAGAAGA-ATTCCGATTG---CTTATCAATA---A---GAAGCG---AAGACACTCACGC-TCATCC-C---CC---TTCTGGCAGGTATTTCCTGCATCAGAATTAAATAT
gi|104164 : AATACGCAGTCCC--AA-G--TC----CAA-----TGCAAAT--C------T---GCGA--AC-------------TTCCGATTG---ATTATCAACACGCG---GA---G---AAGACACTCACGC-T--GTC-C---C
gi|104165 : CCTC--AA-G--TG----CAG-----TTCAAAC--C------T---GCGA--ATATTATAGAAGA-ATTCCGATTT---TTTACCAACA---A---GAAGTG---AAGACACCCACGC-TCATCC-C---CA---TTCTAGCAGGTATTTCCTGCGTCAGAATTTAACATTGTTTACATatcatatcacagaaactacctcagacacttaa
gi|104166 : CCC--AA-A--TG----CAA-----AACAAATATCGAAATAT---GCGA--ACAGTATAGAAGA-ATTCGGATTG---GTTGTCAACA---A---GACGCA---AAGATGCTCACGC-TCGGTA-CATTCTACATTCTGACA
gi|104167 : T--C------T----CGG--GCAGTGTACAAAT-ATTCTGAATGGCGATTATAAACA---A---GAAGCG---AATGCACTCA-ATATCTGTC-T---CA---TTTTGACAGGTATTTCCTGTATCAAAATTTAACATTGTTTACAT
gi|104168 : CGG--GTATTATAGAGGA-ATTCCGATTG---CTTATCAACA---A---GA---GGAGAAGACTCTCACGT-TCATTC-C---CA---TTCTGGCAGTTATTTCCTG----------TATCATTGTATACAT
gi|104169 : --ACATTATAGACGA-ATTCCGAGTG---ATTATCAACA---AAGTGC---G---AAGACGTTCACGC-TCTGTC-C---CA---TTCTGACA
gi|104170 : GC-TCAATC-C---TA---TTCTGGCAAGTTTTTCATGCATCAGAGTTTAACACTATTTACAT
gi|104171 : acTGACAGGTATTGCCTGCATCAGAATTTAACGTTGTTTACAT
Alignments
lowQualScore : 999999999999 22 1 22 555555 333 22 2 1 333 0 0 2 555555
lowQualScore : ............ .. . .. ...... ... .. . . ... . . . ......
lowQualScore : 888888888888 66 9 88 888888 333 55 0 9 333 6 1 0 888888
consensus : AATGCCGGGTATAATACGCAGCCC------------C--AA-ATGCAATGCAAAT--C------TGC---GA--ACATTATAGAGGA-ATTCCGATTG---ATTATCAACAAGAAGCGAAGACACTCACGCTCAGTC-C------CATTCTGGCAGGTATTTCCTGCATCAGAATTTAACATTGTTTACAT
Reference ( family-703 ) : AATGCCGGGTATAATACGCAGCCC------------C--AA-ATGCAATGCAAAT--C------TGC---GA--ACATTATAGAGGA-ATTCCGATTG---ATTATCAACAAGAAGCGAAGACACTCACGCTCAGTC-C------CATTCTGGCAGGTATTTCCTGCATCAGAATTTAACATTGTTTACAT
gi|104146 : AATGCCGGGTATAATACGCAGCCC------------C--AA-ATACAATGCAAAT--C------TGC---GA--ACATTATAGAGGA-ATTCTGATTG---ATTGTCAACAAGA---GAAGACACTCGTGTTCAGTC-C------CTTTCTGGCAGGTATTTCCTGCTTCAGAATTTAACATTGTTTACAT
gi|104147 : AATGCTGGGTATAATACGCAGCCC------------C--AA-ATGCAATGCAAAT--C------TGC----ATTACTTTATAGAAGA-ATTGTGATTG---ATTATCAACAAGAAGCAAAGACACTCACGCTCAGTC-C------CATTCTGGCAGGTATTTACTGCATCAGAATTTAACATTGTTTACAT
gi|104148 : AATGCCGGGTATAATACGCAGCCC------------A--AA-ATGCAATGCAAAT--C------TGC---GA--ACATAATAGACGA-ATTCCAATTG---ACTATCAACAAGAGG-GAAGACACTCACACTCAGTC-C------CATTCTTGCAGGTATTTCCTGCATCAGAATTTAACATTGTTTACAT
gi|104149 : AATGCTGGGTATAATATGCAGCCC------------C--AA-ATACAATGCAAAT--C------TGC---AA--ACATTATAGAGGA-ATTCTGATTG---ATTGTCAACAAGAGGAGAAGACACTCGTGTTCAGTC-C------CTTTCTGGCTGGTATTTCCTGCTTCAGAATTTAACATTATTTACAT
gi|104150 : AATGCCGGGTATAATACCCAGCCC------------C--AA-ATGCAGTTCAAAT--C------TGT---AA--ACACTATAGAGGT-ATTCCGATTG---CTTATCAACAAGAAGCGAAGACACTCACGCTCAGTT-C------CATTCTGGCAGGTATTTCCTGCATCCAAAGTTAACATTGTTTCCAT
gi|104151 : AATGCCGGATATAATACGCAGCCC------------C--AA-ATGCAATGCAAAT--A------TGC---GA--ACATTTTAAAAGA-ATTCAGATTG---GTTACCAACAGGAAGCGAATACACTCACGTACAGTC-C------CATTCTGGCAGGAATTTCCTGCATCAAAAGTTAACATTGTTTACAT
gi|104152 : AATGACAGGTATAATATGCAGCCT------------C--AA-ATGCAGTGCAAA---------------------CATTATAGAGGA-ATTCTGATTG---ATTATCAACAAGAAGCAAAGACACTCACGCTCAGTC-T------CATTCTGGCAGGTATTTCCTGCATCAGAATTTAATATTGTTTACAT
gi|104153 : AATGCCGGGTATATTAGGCAGCCC------------C--AA-ATGCAATGCAAAT--C------TTC---GA--ACATTATAGAAGA-CTTCCGATTG---ATTATCAACAAG-------------CATGCTCTGTC-C------CTTTCCGGCAGGTATTTCATGCATCAGAATTAAACATTGTTT
gi|104154 : AATGCCATGTATAATGTGCAGCCC------------A--AA-ATGCAATGAAAAT--C------TGT---GA--ACATTATAGAGGG-ATTCTGATTG---ATTATCAACAATAAACGAAGCCACTTACGCTCAGTC-T------CATTCTGGCAGA----------ATCAGAATTTAACATTATTTACAT
gi|104155 : AGTGCGGGGTATAAATCGTAGCCCTAAAACTATCCTC--AA-AT-CTATGCAAAT--A------TGC---GA--ACATTATAGAGGA-ATTCCGATCG---ATTATCAACAAGAAACGAACACACCCACG---A--C-C------CATTCTGGTAGATATTTCCTGCATCAGAATTTAACATTATTAACAT
gi|104156 : AATGCGGGGCATAAAATGCAGTCC------------C--AGCAT-CAATGCAAAT--C------T-CTAGGG--ACAATGCAGAGGA-ATTCCGATTA---A-TATCA
gi|104157 : AATGCAGAGTATAAAACGCAACAC------------C--AA-CTGCGATGCAAAT--C------T--------------------GA-ATTTCAAATG---ATTATCAACA
gi|104158 : TGCTGGGTATATTAAGCAG---------------------------TTAAAAC--C------TGC---GA--ATATTATAGAAGA-ATTTCGATTG---CTTATCAACAAGAAGCGAAGACACCTACGCTCA-TCAC------CATTCTGGCAAGTAATTCCTGCATCAGAATTTAACATTGTTTACAT
gi|104159 : TGCCGGGTATAATACGCAGACC------------C--AA-ATGCAGTGCA
gi|104160 : TGCCGGGTATAATACGCAGACC------------C--AA-ATGCAGTGTA
gi|104161 : CGGATATAATACGCAGCCC------------A--AA-ATGCAATGCAAAT--C------TGC---GA--ACATTATAGA
gi|104162 : GGCTACAAAACACATCTC------------CTCAG-CTCCAATGCAAAT--C------AGC---GA--ATGT-------GACATTC----TG---ATTATCAGCAAGAAGCGAAAATGCTCACATTCAGAC-C------CATTCCAACAGGTATTTCCTGCATCATAATTTAACATTATTT
gi|104163 : GGTATAATACGTATCCC------------C--AA-GTGCAGTTCAAAC--C------TGT---AA--ATGTTATAGAAGA-ATTCCGATTG---CTTATCAATAAGAAGCGAAGACACTCACGCTCATCC-C------CCTTCTGGCAGGTATTTCCTGCATCAGAATTAAATAT
gi|104164 : AATACGCAGTCC------------C--AA-GTCCAATGCAAAT--C------TGC---GA--AC-------------TTCCGATTG---ATTATCAACACGCGGAGAAGACACTCACGCT--GTC-C------CAT
gi|104165 : CCT------------C--AA-GTGCAGTTCAAAC--C------TGC---GA--ATATTATAGAAGA-ATTCCGATTT---TTTACCAACAAGAAGTGAAGACACCCACGCTCATCC-C------CATTCTAGCAGGTATTTCCTGCGTCAGAATTTAACATTGTTTACATcatatcacagaaactacctcagacacttaa
gi|104166 : CC------------C--AA-ATGCAAAACAAATATCGAAATATGC---GA--ACAGTATAGAAGA-ATTCGGATTG---GTTGTCAACAAGACGCAAAGATGCTCACGCTCGGTA-CATTCTACATTCTGACA
gi|104167 : T--C------T-C---GG--GCAGTGTACAAAT-ATTCTGAATGGCGATTATAAACAAGAAGCGAATGCACTCAATATCTGTC-T------CATTTTGACAGGTATTTCCTGTATCAAAATTTAACATTGTTTACAT
gi|104168 : C---GG--GTATTATAGAGGA-ATTCCGATTG---CTTATCAACAAGAGGAGAAGACTCTCACGTTCATTC-C------CATTCTGGCAGTTATTTCCTGTATCA
gi|104169 : --ACATTATAGACGA-ATTCCGAGTG---ATTATCAACAAAGTGCGAAGACGTTCACGCTCTGTC-C------CATTCTGACAttgtatacat
gi|104170 : ACGCTCAATC-C------TATTCTGGCAAGTTTTTCATGCATCAGAGTTTAACACTATTTACAT
gi|104171 : TGACAGGTATTGCCTGCATCAGAATTTAACGTTGTTTACAT
Alignments
lowQualScore : 999999999999 22 1 22 555555 333 22 2 1 333 0 0 2 555555
lowQualScore : ............ .. . .. ...... ... .. . . ... . . . ......
lowQualScore : 888888888888 66 9 88 888888 333 55 0 9 333 6 1 0 888888
consensus : AATGCCGGGTATAATACGCAGCCC------------C--AA-ATGCAATGCAAAT--C------TGC---GA--ACATTATAGAGGA-ATTCCGATTG---ATTATCAACAAGAAGCGAAGACACTCACGCTCAGTC-C------CATTCTGGCAGGTATTTCCTGCATCAGAATTTAACATTGTTTACAT
Reference ( family-703 ) : AATGCCGGGTATAATACGCAGCCC------------C--AA-ATGCAATGCAAAT--C------TGC---GA--ACATTATAGAGGA-ATTCCGATTG---ATTATCAACAAGAAGCGAAGACACTCACGCTCAGTC-C------CATTCTGGCAGGTATTTCCTGCATCAGAATTTAACATTGTTTACAT
gi|104146 : AATGCCGGGTATAATACGCAGCCC------------C--AA-ATACAATGCAAAT--C------TGC---GA--ACATTATAGAGGA-ATTCTGATTG---ATTGTCAACAAGA---GAAGACACTCGTGTTCAGTC-C------CTTTCTGGCAGGTATTTCCTGCTTCAGAATTTAACATTGTTTACAT
gi|104147 : AATGCTGGGTATAATACGCAGCCC------------C--AA-ATGCAATGCAAAT--C------TGC----ATTACTTTATAGAAGA-ATTGTGATTG---ATTATCAACAAGAAGCAAAGACACTCACGCTCAGTC-C------CATTCTGGCAGGTATTTACTGCATCAGAATTTAACATTGTTTACAT
gi|104148 : AATGCCGGGTATAATACGCAGCCC------------A--AA-ATGCAATGCAAAT--C------TGC---GA--ACATAATAGACGA-ATTCCAATTG---ACTATCAACAAGAGG-GAAGACACTCACACTCAGTC-C------CATTCTTGCAGGTATTTCCTGCATCAGAATTTAACATTGTTTACAT
gi|104149 : AATGCTGGGTATAATATGCAGCCC------------C--AA-ATACAATGCAAAT--C------TGC---AA--ACATTATAGAGGA-ATTCTGATTG---ATTGTCAACAAGAGGAGAAGACACTCGTGTTCAGTC-C------CTTTCTGGCTGGTATTTCCTGCTTCAGAATTTAACATTATTTACAT
gi|104150 : AATGCCGGGTATAATACCCAGCCC------------C--AA-ATGCAGTTCAAAT--C------TGT---AA--ACACTATAGAGGT-ATTCCGATTG---CTTATCAACAAGAAGCGAAGACACTCACGCTCAGTT-C------CATTCTGGCAGGTATTTCCTGCATCCAAAGTTAACATTGTTTCCAT
gi|104151 : AATGCCGGATATAATACGCAGCCC------------C--AA-ATGCAATGCAAAT--A------TGC---GA--ACATTTTAAAAGA-ATTCAGATTG---GTTACCAACAGGAAGCGAATACACTCACGTACAGTC-C------CATTCTGGCAGGAATTTCCTGCATCAAAAGTTAACATTGTTTACAT
gi|104152 : AATGACAGGTATAATATGCAGCCT------------C--AA-ATGCAGTGCAAA---------------------CATTATAGAGGA-ATTCTGATTG---ATTATCAACAAGAAGCAAAGACACTCACGCTCAGTC-T------CATTCTGGCAGGTATTTCCTGCATCAGAATTTAATATTGTTTACAT
gi|104153 : AATGCCGGGTATATTAGGCAGCCC------------C--AA-ATGCAATGCAAAT--C------TTC---GA--ACATTATAGAAGA-CTTCCGATTG---ATTATCAACAAG-------------CATGCTCTGTC-C------CTTTCCGGCAGGTATTTCATGCATCAGAATTAAACATTGTTT
gi|104154 : AATGCCATGTATAATGTGCAGCCC------------A--AA-ATGCAATGAAAAT--C------TGT---GA--ACATTATAGAGGG-ATTCTGATTG---ATTATCAACAATAAACGAAGCCACTTACGCTCAGTC-T------CATTCTGGCAGA----------ATCAGAATTTAACATTATTTACAT
gi|104155 : AGTGCGGGGTATAAATCGTAGCCCTAAAACTATCCTC--AA-AT-CTATGCAAAT--A------TGC---GA--ACATTATAGAGGA-ATTCCGATCG---ATTATCAACAAGAAACGAACACACCCACG---A--C-C------CATTCTGGTAGATATTTCCTGCATCAGAATTTAACATTATTAACAT
gi|104156 : AATGCGGGGCATAAAATGCAGTCC------------C--AGCAT-CAATGCAAAT--C------T-CTAGGG--ACAATGCAGAGGA-ATTCCGATTA---A-TATCA
gi|104157 : AATGCAGAGTATAAAACGCAACAC------------C--AA-CTGCGATGCAAAT--C------T--------------------GA-ATTTCAAATG---ATTATCAACA
gi|104158 : TGCTGGGTATATTAAGCAG---------------------------TTAAAAC--C------TGC---GA--ATATTATAGAAGA-ATTTCGATTG---CTTATCAACAAGAAGCGAAGACACCTACGCTCA-TCAC------CATTCTGGCAAGTAATTCCTGCATCAGAATTTAACATTGTTTACAT
gi|104159 : TGCCGGGTATAATACGCAGACC------------C--AA-ATGCAGTGCA
gi|104160 : TGCCGGGTATAATACGCAGACC------------C--AA-ATGCAGTGTA
gi|104161 : CGGATATAATACGCAGCCC------------A--AA-ATGCAATGCAAAT--C------TGC---GA--ACATTATAGA
gi|104162 : GGCTACAAAACACATCTC------------CTCAG-CTCCAATGCAAAT--C------AGC---GA--ATGT-------GACATTC----TG---ATTATCAGCAAGAAGCGAAAATGCTCACATTCAGAC-C------CATTCCAACAGGTATTTCCTGCATCATAATTTAACATTATTT
gi|104163 : GGTATAATACGTATCCC------------C--AA-GTGCAGTTCAAAC--C------TGT---AA--ATGTTATAGAAGA-ATTCCGATTG---CTTATCAATAAGAAGCGAAGACACTCACGCTCATCC-C------CCTTCTGGCAGGTATTTCCTGCATCAGAATTAAATAT
gi|104164 : AATACGCAGTCC------------C--AA-GTCCAATGCAAAT--C------TGC---GA--AC-------------TTCCGATTG---ATTATCAACACGCGGAGAAGACACTCACGCT--GTC-C------CAT
gi|104165 : CCT------------C--AA-GTGCAGTTCAAAC--C------TGC---GA--ATATTATAGAAGA-ATTCCGATTT---TTTACCAACAAGAAGTGAAGACACCCACGCTCATCC-C------CATTCTAGCAGGTATTTCCTGCGTCAGAATTTAACATTGTTTACATcatatcacagaaactacctcagacacttaa
gi|104166 : CC------------C--AA-ATGCAAAACAAATATCGAAATATGC---GA--ACAGTATAGAAGA-ATTCGGATTG---GTTGTCAACAAGACGCAAAGATGCTCACGCTCGGTA-CATTCTACATTCTGACA
gi|104167 : T--C------T-C---GG--GCAGTGTACAAAT-ATTCTGAATGGCGATTATAAACAAGAAGCGAATGCACTCAATATCTGTC-T------CATTTTGACAGGTATTTCCTGTATCAAAATTTAACATTGTTTACAT
gi|104168 : C---GG--GTATTATAGAGGA-ATTCCGATTG---CTTATCAACAAGAGGAGAAGACTCTCACGTTCATTC-C------CATTCTGGCAGTTATTTCCTGTATCA
gi|104169 : --ACATTATAGACGA-ATTCCGAGTG---ATTATCAACAAAGTGCGAAGACGTTCACGCTCTGTC-C------CATTCTGACAttgtatacat
gi|104170 : ACGCTCAATC-C------TATTCTGGCAAGTTTTTCATGCATCAGAGTTTAACACTATTTACAT
gi|104171 : TGACAGGTATTGCCTGCATCAGAATTTAACGTTGTTTACAT
blockSeqs : TAAAACTATCCT TC C AT GAAATA TAG TT A C GCG A ATTCTA
blockSeqs : . . . . . . . C . . . .
blockSeqs : . . . . . . . G . . . .
blockSeqs : . . . . . . . G . . . .
blockSeqs : . . . . . . . A . . . .
blockSeqs : . . . . . . . G . . . .
blockSeqs : . . . . . . . A . . . .
blockSeqs : . . . . . . . G . . . .
blockSeqs : . . . . . . . G . . . .
blockSeqs : . . . . . . . G . . . .
blockSeqs : . . . . . . . A . . . .
blockSeqs : . . . . . . . A . . . .
blockSeqs : . . . . . . . A . . . .
blockSeqs : . . . . . . . A . . . .
blockSeqs : . . . . . . . A . . . .
blockSeqs : . . . . . . . G . . . .
blockSeqs : . . . . . . . C . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : .
blockSeqCons :
originalCons : AATGCCGGGTATAATACGCAGCCC------------C--AA-ATGCAATGCAAAT--C------TGC---GA--ACATTATAGAGGA-ATTCCGATTG---ATTATCAACAAGAAGCGAAGACACTCACGCTCAGTC-C------CATTCTGGCAGGTATTTCCTGCATCAGAATTTAACATTGTTTACAT
finalCons : AATGCCGGGTATAATACGCAGCCC------------C--AA-ATGCAATGCAAAT--C------TGC---GA--ACATTATAGAGGA-ATTCCGATTG---ATTATCAACAAGAAGCGAAGACACTCACGCTCAGTC-C------CATTCTGGCAGGTATTTCCTGCATCAGAATTTAACATTGTTTACAT
Alignments
lowQualScore : 999999999999 22 1 22 555555 333 22 2 1 333 0 0 2 555555
lowQualScore : ............ .. . .. ...... ... .. . . ... . . . ......
lowQualScore : 888888888888 66 9 88 888888 333 55 0 9 333 6 1 0 888888
consensus : AATGCCGGGTATAATACGCAGCCC------------C--AA-ATGCAATGCAAAT--C------TGC---GA--ACATTATAGAGGA-ATTCCGATTG---ATTATCAACAAGAAGCGAAGACACTCACGCTCAGTC-C------CATTCTGGCAGGTATTTCCTGCATCAGAATTTAACATTGTTTACAT
Reference ( family-703 ) : AATGCCGGGTATAATACGCAGCCC------------C--AA-ATGCAATGCAAAT--C------TGC---GA--ACATTATAGAGGA-ATTCCGATTG---ATTATCAACAAGAAGCGAAGACACTCACGCTCAGTC-C------CATTCTGGCAGGTATTTCCTGCATCAGAATTTAACATTGTTTACAT
gi|104146 : AATGCCGGGTATAATACGCAGCCC------------C--AA-ATACAATGCAAAT--C------TGC---GA--ACATTATAGAGGA-ATTCTGATTG---ATTGTCAACAAGA---GAAGACACTCGTGTTCAGTC-C------CTTTCTGGCAGGTATTTCCTGCTTCAGAATTTAACATTGTTTACAT
gi|104147 : AATGCTGGGTATAATACGCAGCCC------------C--AA-ATGCAATGCAAAT--C------TGC----ATTACTTTATAGAAGA-ATTGTGATTG---ATTATCAACAAGAAGCAAAGACACTCACGCTCAGTC-C------CATTCTGGCAGGTATTTACTGCATCAGAATTTAACATTGTTTACAT
gi|104148 : AATGCCGGGTATAATACGCAGCCC------------A--AA-ATGCAATGCAAAT--C------TGC---GA--ACATAATAGACGA-ATTCCAATTG---ACTATCAACAAGAGG-GAAGACACTCACACTCAGTC-C------CATTCTTGCAGGTATTTCCTGCATCAGAATTTAACATTGTTTACAT
gi|104149 : AATGCTGGGTATAATATGCAGCCC------------C--AA-ATACAATGCAAAT--C------TGC---AA--ACATTATAGAGGA-ATTCTGATTG---ATTGTCAACAAGAGGAGAAGACACTCGTGTTCAGTC-C------CTTTCTGGCTGGTATTTCCTGCTTCAGAATTTAACATTATTTACAT
gi|104150 : AATGCCGGGTATAATACCCAGCCC------------C--AA-ATGCAGTTCAAAT--C------TGT---AA--ACACTATAGAGGT-ATTCCGATTG---CTTATCAACAAGAAGCGAAGACACTCACGCTCAGTT-C------CATTCTGGCAGGTATTTCCTGCATCCAAAGTTAACATTGTTTCCAT
gi|104151 : AATGCCGGATATAATACGCAGCCC------------C--AA-ATGCAATGCAAAT--A------TGC---GA--ACATTTTAAAAGA-ATTCAGATTG---GTTACCAACAGGAAGCGAATACACTCACGTACAGTC-C------CATTCTGGCAGGAATTTCCTGCATCAAAAGTTAACATTGTTTACAT
gi|104152 : AATGACAGGTATAATATGCAGCCT------------C--AA-ATGCAGTGCAAA---------------------CATTATAGAGGA-ATTCTGATTG---ATTATCAACAAGAAGCAAAGACACTCACGCTCAGTC-T------CATTCTGGCAGGTATTTCCTGCATCAGAATTTAATATTGTTTACAT
gi|104153 : AATGCCGGGTATATTAGGCAGCCC------------C--AA-ATGCAATGCAAAT--C------TTC---GA--ACATTATAGAAGA-CTTCCGATTG---ATTATCAACAAG-------------CATGCTCTGTC-C------CTTTCCGGCAGGTATTTCATGCATCAGAATTAAACATTGTTT
gi|104154 : AATGCCATGTATAATGTGCAGCCC------------A--AA-ATGCAATGAAAAT--C------TGT---GA--ACATTATAGAGGG-ATTCTGATTG---ATTATCAACAATAAACGAAGCCACTTACGCTCAGTC-T------CATTCTGGCAGA----------ATCAGAATTTAACATTATTTACAT
gi|104155 : AGTGCGGGGTATAAATCGTAGCCCTAAAACTATCCTC--AA-AT-CTATGCAAAT--A------TGC---GA--ACATTATAGAGGA-ATTCCGATCG---ATTATCAACAAGAAACGAACACACCCACG---A--C-C------CATTCTGGTAGATATTTCCTGCATCAGAATTTAACATTATTAACAT
gi|104156 : AATGCGGGGCATAAAATGCAGTCC------------C--AGCAT-CAATGCAAAT--C------T-CTAGGG--ACAATGCAGAGGA-ATTCCGATTA---A-TATCA
gi|104157 : AATGCAGAGTATAAAACGCAACAC------------C--AA-CTGCGATGCAAAT--C------T--------------------GA-ATTTCAAATG---ATTATCAACA
gi|104158 : TGCTGGGTATATTAAGCAG---------------------------TTAAAAC--C------TGC---GA--ATATTATAGAAGA-ATTTCGATTG---CTTATCAACAAGAAGCGAAGACACCTACGCTCA-TCAC------CATTCTGGCAAGTAATTCCTGCATCAGAATTTAACATTGTTTACAT
gi|104159 : TGCCGGGTATAATACGCAGACC------------C--AA-ATGCAGTGCA
gi|104160 : TGCCGGGTATAATACGCAGACC------------C--AA-ATGCAGTGTA
gi|104161 : CGGATATAATACGCAGCCC------------A--AA-ATGCAATGCAAAT--C------TGC---GA--ACATTATAGA
gi|104162 : GGCTACAAAACACATCTC------------CTCAG-CTCCAATGCAAAT--C------AGC---GA--ATGT-------GACATTC----TG---ATTATCAGCAAGAAGCGAAAATGCTCACATTCAGAC-C------CATTCCAACAGGTATTTCCTGCATCATAATTTAACATTATTT
gi|104163 : GGTATAATACGTATCCC------------C--AA-GTGCAGTTCAAAC--C------TGT---AA--ATGTTATAGAAGA-ATTCCGATTG---CTTATCAATAAGAAGCGAAGACACTCACGCTCATCC-C------CCTTCTGGCAGGTATTTCCTGCATCAGAATTAAATAT
gi|104164 : AATACGCAGTCC------------C--AA-GTCCAATGCAAAT--C------TGC---GA--AC-------------TTCCGATTG---ATTATCAACACGCGGAGAAGACACTCACGCT--GTC-C------CAT
gi|104165 : CCT------------C--AA-GTGCAGTTCAAAC--C------TGC---GA--ATATTATAGAAGA-ATTCCGATTT---TTTACCAACAAGAAGTGAAGACACCCACGCTCATCC-C------CATTCTAGCAGGTATTTCCTGCGTCAGAATTTAACATTGTTTACATcatatcacagaaactacctcagacacttaa
gi|104166 : CC------------C--AA-ATGCAAAACAAATATCGAAATATGC---GA--ACAGTATAGAAGA-ATTCGGATTG---GTTGTCAACAAGACGCAAAGATGCTCACGCTCGGTA-CATTCTACATTCTGACA
gi|104167 : T--C------T-C---GG--GCAGTGTACAAAT-ATTCTGAATGGCGATTATAAACAAGAAGCGAATGCACTCAATATCTGTC-T------CATTTTGACAGGTATTTCCTGTATCAAAATTTAACATTGTTTACAT
gi|104168 : C---GG--GTATTATAGAGGA-ATTCCGATTG---CTTATCAACAAGAGGAGAAGACTCTCACGTTCATTC-C------CATTCTGGCAGTTATTTCCTGTATCA
gi|104169 : --ACATTATAGACGA-ATTCCGAGTG---ATTATCAACAAAGTGCGAAGACGTTCACGCTCTGTC-C------CATTCTGACAttgtatacat
gi|104170 : ACGCTCAATC-C------TATTCTGGCAAGTTTTTCATGCATCAGAGTTTAACACTATTTACAT
gi|104171 : TGACAGGTATTGCCTGCATCAGAATTTAACGTTGTTTACAT