lowQualScore : 1111 111 11
lowQualScore : 4 3333 00 4 1 0 6666666 1111 555 2 0 0 2 22 0
lowQualScore : . .... .. . . . ....... .... ... . . . . .. .
lowQualScore : 1 9999 99 4 8 2 5555555 0000 444 0 8 9 5 88 5
consensus : TGCAGGACGAAGCGTACCACTGCC----TTGGCGTACCAC-TACC------CAAGCGTA-CAATTTCT--G-ACGATTTCAGTACGAAG-ATT-ACCATATGCGACATACATATAGA
Reference ( gi|120128 ) : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTAC-TACC------CAAGCATA-CAATTTCT--G-ATGATTTCAGTACGAAG-ATG-ACCATATGCGACATACATATAGA
gi|120129 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTAT-TACC------CAAGCATA-CAATTTCT--G-ATGATTTCAGTACGAAG-ATG-ACCATATGCGACATACATATAGA
gi|120133 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTAC-TACC------CAAGCATA-CAATTTCT--G-ATGATTTCAGTACGAAT-ATG-ACCATATACGACATACATATAGA
gi|120136 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTAC-TACC------CAAGCATA-CAATGTCT--G-ATAATTTCAGTACGAAT-ATG-ACCACATGCGACATACATATAGA
gi|120134 : TGCAGAATGAAGCGTACCAATGCA----TTGGCGTTCCAC-TACC------CAAGCATA-CAGTTTCT--G-ATGATTTCAGTACGAAG-ATT-ACCATATGCGACATACATATAGA
gi|120132 : TGAAGAATGAAGCATACCAATGCC----TTGGCGTACCAC-TACC------CAAGCATT-CAATTTCT--G-ATGATTTCAGTACGAAG-ATT-ACCATATGCGACATACATA
gi|120131 : TGAAGAATGAAGCATACCAATGCC----TTGGCGTACCAC-TACC------CAAGCATT-CAATTTCT--G-ATGATTTCAGTACGAAG-ATT-ACCATATGCGACATACATAataagtttagaatat
gi|120126 : TGCAGAATGAAGCGTACCAATGCC----TTGGTGTACCAC-TACC------CAAGCAAA-CAAATGCT--G-ATGATTTCAGTACGAAG-ATT-ACCATATGCAACATACATAGAGAataagtttagaatat
gi|120130 : TGCAGAATGAAGCGTACCAATGCA----TTGGCGTACCAC-TACC------CAAGCATA-CAATTTCT--G-ATGATTTCAGTACGAAG-ATT-ACCATA
gi|120137 : TGCAGAATGAAGCGTACAAATGCA----TTAGCATACCAC-TACT------CAAGCAT------TTCT--G-ATGATTTCAGTACAAAG-ATT-ACCATATGCGACATACATATAGA
gi|120124 : TGCAGAATGAAGCATACCAATGCC----TTGGCGTACCAC-AACC------CAAGCAT--------------ATGATTTCAGGATGAAG-ATT-ACCATATA-GATATA
gi|120119 : TGCAGGACGAAGCGTACCACTGTC----TTAGCGTACCAC-TGCC------TTTACGTA-C-----C--------ATTTCAGGACGAAGCAT--ACCAttatccagtgggaa
gi|120125 : TGCAGGACGACGCGTATCGCAGCC----TTAGCGTACCGT-TACC------CAAGCGTG-CCATTTCcctatagattatatagtagtaaat
gi|120120 : TGCAGGACGAAGCGTACCACTGTC----TTTCCGTACCAC-TGCC------TTTACGTA-C-----C--------ATTTCAGGACGAAG-CGT-ACCACATAT-ATATA-ATATAGaggacgaa
gi|120123 : TGCCGGACGAAGCATACCACTTCT----TTAGCGTATCAC-TACC------CTTGCGTA-C-----C--------ATTTCAGGATGAAG-AGT-ACCATAtagtaaat
gi|120135 : TGCAGAATGAAGTGTACCACTGCCTGCATTATTGTACCAC-TACCAAGGATGAAGCATA-CCATggttaaata
gi|120118 : TGCAGGACGAAGCGTACCACTGTC----TTTCCGTACCAC-TGCC------------------TTTAT--GTACCATTTCAGGACTAA--ACGTACCACATaaatgaaatat
gi|120121 : TGCAGGACGAAGCGTACCACTGTC----TATCCGTACCAC-TGCC------TTTACGTA-C-----C--------ATTTCAGGACGAAG-CGT-ACCACATAT-ATGTA-ATATAGatagattatatagtagtaaat
gi|120140 : GGACGAAGCGTACCACTGCC----TTACCGTACCAG-GA-C------GAAGCGTACCAGTTTCTAGG-ACGAtagtaaat
gi|120141 : GGACGAAGCGTACCACTGCC----TTACCGCACCAG-GA-C------AAAGCGTACCAGTTTCTAGG-ACGA----AGTACagcgtaccacatatagattatacagggaaaat
gi|120142 : GGACGAAGCGTACCACTGCC----TTACCGTACCAG-GA-C------GAAGTGTACCAGTTTCTAGG-ACGAcacatatagattatatagggaaaat
gi|120139 : GGACGAAGCGTACCACTGCC----TAACCGTACCAG-GA-C------GAAGCGTACCACTTTCTAGG-ACGAagcgtaccacatatagattatatagggaaaat
gi|120138 : GGACGAAGCGTACCACAGCC----TTACCGTA--ACAGAAC------GAAGCGTACCAGTTTC------------CAGGACGAAG-CGT-ACCACATagcgtaccacatatagattatatagtgaaa
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|120122 ): TGCAGGACAAAGCATACCACTGTCTTTCCGTACCACTGTCAGGACGAAGTGTACCACATATAGATTATATAGTAGTAAAT
Unaligned ( gi|120143 ): GACGAAGCGTACCACTGCTAGGACGAAGCATACCTGTTTCTAGGACGAAGCGTACCACATATACATTATATAGGGAAAAT
Unaligned ( gi|120127 ): TGCAGGACGAAGCATACCACTACTTTGACATACCACTTCAGGATGAAAACTACTATATGTAAAATATAAAGT
Unaligned ( gi|120144 ): CGTACCACTACATTTTCATACCAGATGCTTCTGTACCATTTAAAGAGGTTTCGTACCAATATGAAATATATATAGA
Alignments
lowQualScore : 1111 222222222
lowQualScore : 0 3333 0 2 444444 0 0000 444444444 1 3 44444 22 2
lowQualScore : . .... . . ...... . .... ......... . . ..... .. .
lowQualScore : 6 3333 8 6 999999 5 6666 666666666 8 0 55555 88 8
consensus : TGCAGGACGAAGCGTACCACTGCC----TTGGCGTACCACTACC----C-AAGCGTA-CAATTTC-T--G-ATGATTTC-AGNACGA-----AGANTACCACATGCGACATACATATAGA
Reference ( family-702 ) : TGCAGGACGAAGCGTACCACTGCC----TTGGCGTACCACTACC----C-AAGCGTA-CAATTTC-T--G-ACGATTTC-AGTACGA-----AGATTACCATATGCGACATACATATAGA
gi|120118 : TGCAGGACGAAGCGTACCACTGTC----TTTCCGTACCACTGCC-----------------TTTA-T--GTACCATTTC-AGGACTA-----AACGTACCACAT
gi|120119 : TGCAGGACGAAGCGTACCACTGTC----TTAGCGTACCACTGCC----T-TTACGTA-C-----C---------ATTTC-AGGACGA-----AGCATACCAatagattatatagtagtaaat
gi|120120 : TGCAGGACGAAGCGTACCACTGTC----TTTCCGTACCACTGCC----T-TTACGTA-C-----C---------ATTTC-AGGACGA-----AGCGTACCACATAT-ATATA-ATATAGcctatagattatatagtagtaaat
gi|120121 : TGCAGGACGAAGCGTACCACTGTC----TATCCGTACCACTGCC----T-TTACGTA-C-----C---------ATTTC-AGGACGA-----AGCGTACCACATAT-ATGTA-ATATAGtagtaaat
gi|120122 : TGCAGGACAAAGCATACCACTGTC----TTTCCGTACCACTGTCAGGACGAAGTGTA-Ctagtaaat
gi|120123 : TGCCGGACGAAGCATACCACTTCT----TTAGCGTATCACTACC----C-TTGCGTA-C-----C---------ATTTC-AGGATGA-----AGAGTACCATAcacatatagattatatagtagtaaat
gi|120124 : TGCAGAATGAAGCATACCAATGCC----TTGGCGTACCACAACC----C-AAGCATA-T--------------GATTTC-AGGATGA-----AGATTACCATATA-GATATAggttaaata
gi|120125 : TGCAGGACGACGCGTATCGCAGCC----TTAGCGTACCGTTACC----C-AAGCGTG-CCATTTCAG--G-ACGAttatccagtgggaa
gi|120126 : TGCAGAATGAAGCGTACCAATGCC----TTGGTGTACCACTACC----C-AAGCAAA-CAAATGC-T--G-ATGATTTC-AGTACGA-----AGATTACCATATGCAACATACATAGAGAa
gi|120127 : TGCAGGACGAAGCATACCACTACT----TTGACATACCACT
gi|120128 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTACTACC----C-AAGCATA-CAATTTC-T--G-ATGATTTC-AGTACGA-----AGATGACCATATGCGACATACATATAGAtcaggatgaaaactactatatgtaaaatataaagt
gi|120129 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTATTACC----C-AAGCATA-CAATTTC-T--G-ATGATTTC-AGTACGA-----AGATGACCATATGCGACATACATATAGA
gi|120130 : TGCAGAATGAAGCGTACCAATGCA----TTGGCGTACCACTACC----C-AAGCATA-CAATTTC-T--G-ATGATTTC-AGTACGA-----AGATTACCATA
gi|120131 : TGAAGAATGAAGCATACCAATGCC----TTGGCGTACCACTACC----C-AAGCATT-CAATTTC-T--G-ATGATTTC-AGTACGA-----AGATTACCATATGCGACATACATA
gi|120132 : TGAAGAATGAAGCATACCAATGCC----TTGGCGTACCACTACC----C-AAGCATT-CAATTTC-T--G-ATGATTTC-AGTACGA-----AGATTACCATATGCGACATACATAataagtttagaatat
gi|120133 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTACTACC----C-AAGCATA-CAATTTC-T--G-ATGATTTC-AGTACGA-----ATATGACCATATACGACATACATATAGAataagtttagaatat
gi|120134 : TGCAGAATGAAGCGTACCAATGCA----TTGGCGTTCCACTACC----C-AAGCATA-CAGTTTC-T--G-ATGATTTC-AGTACGA-----AGATTACCATATGCGACATACATATAGA
gi|120135 : TGCAGAATGAAGTGTACCACTGCCTGCATTATTGTACCACTA-C----C-AAG
gi|120136 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTACTACC----C-AAGCATA-CAATGTC-T--G-ATAATTTC-AGTACGA-----ATATGACCACATGCGACATACATATAGAgatgaagcataccataaatgaaatat
gi|120137 : TGCAGAATGAAGCGTACAAATGCA----TTAGCATACCACTACT----C-AAGC------ATTTC-T--G-ATGATTTC-AGTACAA-----AGATTACCATATGCGACATACATATAGA
gi|120138 : GGACGAAGCGTACCACAGCC----TTACCGTAACA-GAAC----G-AAGCGTACCAGTTTC-------------C-AGGACGA-----AGCGTACCACAT
gi|120139 : GGACGAAGCGTACCACTGCC----TAACCGTACCAGGA-C----G-AAGCGTACCACTTTC-T-------------AGGACGA-----AGCGTACCACATaaagattatatagggaaaat
gi|120140 : GGACGAAGCGTACCACTGCC----TTACCGTACCAGGA-C----G-AAGCGTACCAGTTTC-T-------------AGGACGA-----AGCGTACCACATatagattatatagtgaaa
gi|120141 : GGACGAAGCGTACCACTGCC----TTACCGCACCAGGA-C----A-AAGCGTACCAGTTTC-TAGG-ACGA-----AGTACCACATATAGATTAatagattatacagggaaaat
gi|120142 : GGACGAAGCGTACCACTGCC----TTACCGTACCAGGA-C----G-AAGTGTACCAGTTTC-T-------------AGGACGA-----AGCGTACCACATtatagggaaaat
gi|120143 : GACGAAGCGTACCACTGCT----AGGACG----------------AAGCATA-C-----C-T--G-----TTTCTAGGACGA-----AGCGTACCACATAT-ACAT-TATATAGatagattatatagggaaaat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|120144 ): CGTACCACTACATTTTCATACCAGATGCTTCTGTACCATTTAAAGAGGTTTCGTACCAATATGAAATATATATAGA
Alignments
lowQualScore : 1111 222222
lowQualScore : 0 3333 0 2 444444 0 0000 000000 1 1 44 2
lowQualScore : . .... . . ...... . .... ...... . . .. .
lowQualScore : 6 3333 8 6 999999 5 9999 999999 8 0 77 8
consensus : TGCAGGACGAAGCGTACCACTGCC----TTGGCGTACCACTACC----C-AAGCGTA-CAATTTCTG-ATGATTTC-AGGACGAAGANTACCACATGCGACATACATATAGA
Reference ( family-702 ) : TGCAGGACGAAGCGTACCACTGCC----TTGGCGTACCACTACC----C-AAGCGTA-CAATTTCTG-ATGATTTC-AGNACGAAGANTACCACATGCGACATACATATAGA
gi|120118 : TGCAGGACGAAGCGTACCACTGTC----TTTCCGTACCACTGCC-----------------TTTATGTACCATTTC-AGGACTAAACGTACCACAT
gi|120119 : TGCAGGACGAAGCGTACCACTGTC----TTAGCGTACCACTGCC----T-TTACGTA-C-----C------ATTTC-AGGACGAAGCATACCACatagattatatagtagtaaat
gi|120120 : TGCAGGACGAAGCGTACCACTGTC----TTTCCGTACCACTGCC----T-TTACGTA-C-----C------ATTTC-AGGACGAAGCGTACCACATAT-ATATA-ATATAGctatagattatatagtagtaaat
gi|120121 : TGCAGGACGAAGCGTACCACTGTC----TATCCGTACCACTGCC----T-TTACGTA-C-----C------ATTTC-AGGACGAAGCGTACCACATAT-ATGTA-ATATAGtagtaaat
gi|120122 : TGCAGGACAAAGCATACCACTGTC----TTTCCGTACCACTGTCAGGACGAAGTGTA-Ctagtaaat
gi|120123 : TGCCGGACGAAGCATACCACTTCT----TTAGCGTATCACTACC----C-TTGCGTA-C-----C------ATTTC-AGGATGAAGAGTACCATAcacatatagattatatagtagtaaat
gi|120124 : TGCAGAATGAAGCATACCAATGCC----TTGGCGTACCACAACC----C-AAGCATA------------TGATTTC-AGGATGAAGATTACCATATA-GATATAggttaaata
gi|120125 : TGCAGGACGACGCGTATCGCAGCC----TTAGCGTACCGTTACC----C-AAGCGTG-CCATTTCttatccagtgggaa
gi|120126 : TGCAGAATGAAGCGTACCAATGCC----TTGGTGTACCACTACC----C-AAGCAAA-CAAATGCTG-ATGATTTC-AGTACGAAGATTACCATATGCAACATACATAGAGAaggacgaa
gi|120127 : TGCAGGACGAAGCATACCACTACT----TTGACATACCACT
gi|120128 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTACTACC----C-AAGCATA-CAATTTCTG-ATGATTTC-AGTACGAAGATGACCATATGCGACATACATATAGAtcaggatgaaaactactatatgtaaaatataaagt
gi|120129 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTATTACC----C-AAGCATA-CAATTTCTG-ATGATTTC-AGTACGAAGATGACCATATGCGACATACATATAGA
gi|120130 : TGCAGAATGAAGCGTACCAATGCA----TTGGCGTACCACTACC----C-AAGCATA-CAATTTCTG-ATGATTTC-AGTACGAAGATTACCATA
gi|120131 : TGAAGAATGAAGCATACCAATGCC----TTGGCGTACCACTACC----C-AAGCATT-CAATTTCTG-ATGATTTC-AGTACGAAGATTACCATATGCGACATACATA
gi|120132 : TGAAGAATGAAGCATACCAATGCC----TTGGCGTACCACTACC----C-AAGCATT-CAATTTCTG-ATGATTTC-AGTACGAAGATTACCATATGCGACATACATAataagtttagaatat
gi|120133 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTACTACC----C-AAGCATA-CAATTTCTG-ATGATTTC-AGTACGAATATGACCATATACGACATACATATAGAataagtttagaatat
gi|120134 : TGCAGAATGAAGCGTACCAATGCA----TTGGCGTTCCACTACC----C-AAGCATA-CAGTTTCTG-ATGATTTC-AGTACGAAGATTACCATATGCGACATACATATAGA
gi|120135 : TGCAGAATGAAGTGTACCACTGCCTGCATTATTGTACCACTA-C----C-AAG
gi|120136 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTACTACC----C-AAGCATA-CAATGTCTG-ATAATTTC-AGTACGAATATGACCACATGCGACATACATATAGAgatgaagcataccataaatgaaatat
gi|120137 : TGCAGAATGAAGCGTACAAATGCA----TTAGCATACCACTACT----C-AAGC------ATTTCTG-ATGATTTC-AGTACAAAGATTACCATATGCGACATACATATAGA
gi|120138 : GGACGAAGCGTACCACAGCC----TTACCGTAACA-GAAC----G-AAGCGTACCAGTTTC----------C-AGGACGAAGCGTACCACAT
gi|120139 : GGACGAAGCGTACCACTGCC----TAACCGTACCAGGA-C----G-AAGCGTACCACTTTCT-----------AGGACGAAGCGTACCACATaaagattatatagggaaaat
gi|120140 : GGACGAAGCGTACCACTGCC----TTACCGTACCAGGA-C----G-AAGCGTACCAGTTTCT-----------AGGACGAAGCGTACCACATatagattatatagtgaaa
gi|120141 : GGACGAAGCGTACCACTGCC----TTACCGCACCAGGA-C----A-AAGCGTACCAGTTTCT-----------AGGACGAAG--TACCACATatagattatacagggaaaat
gi|120142 : GGACGAAGCGTACCACTGCC----TTACCGTACCAGGA-C----G-AAGTGTACCAGTTTCT-----------AGGACGAAGCGTACCACATatagattatatagggaaaat
gi|120143 : GACGAAGCGTACCACTGCT----AGGACG----------------AAGCATA-C-----CTG-----TTTCTAGGACGAAGCGTACCACATAT-ACAT-TATATAGatagattatatagggaaaat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|120144 ): CGTACCACTACATTTTCATACCAGATGCTTCTGTACCATTTAAAGAGGTTTCGTACCAATATGAAATATATATAGA
Alignments
lowQualScore : 33333333333333
lowQualScore : 0 3333 0 3 0 0 44444444444444 1 0 55 2
lowQualScore : . .... . . . . .............. . . .. .
lowQualScore : 6 3333 8 0 9 5 66666666666666 7 4 33 8
consensus : TGCAGGACGAAGCGTACCACTGCC----TTGGCGTACCACTACCCAAGCGTA-CAATTTCTG-ATGATTTC-AGGACGAAGNNTACCACATGCGACATACATATAGA
Reference ( family-702 ) : TGCAGGACGAAGCGTACCACTGCC----TTGGCGTACCACTACCCAAGCGTA-CAATTTCTG-ATGATTTC-AGGACGAAGANTACCACATGCGACATACATATAGA
gi|120118 : TGCAGGACGAAGCGTACCACTGTC----TTTCCGTACCACTGCC------------TTTATGTACCATTTC-AGGACTAAACGTACCACAT
gi|120119 : TGCAGGACGAAGCGTACCACTGTC----TTAGCGTACCACTGCCTTTACGTA-C-----C------ATTTC-AGGACGAAGCATACCACatagattatatagtagtaaat
gi|120120 : TGCAGGACGAAGCGTACCACTGTC----TTTCCGTACCACTGCCTTTACGTA-C-----C------ATTTC-AGGACGAAGCGTACCACATAT-ATATA-ATATAGctatagattatatagtagtaaat
gi|120121 : TGCAGGACGAAGCGTACCACTGTC----TATCCGTACCACTGCCTTTACGTA-C-----C------ATTTC-AGGACGAAGCGTACCACATAT-ATGTA-ATATAGtagtaaat
gi|120122 : TGCAGGACAAAGCATACCACTGTC----TTTCCGTACCACT--------GT-------------------C-AGGACGAAGTGTACCACATtagtaaat
gi|120123 : TGCCGGACGAAGCATACCACTTCT----TTAGCGTATCACTACCCTTGCGTA-C-----C------ATTTC-AGGATGAAGAGTACCATAatagattatatagtagtaaat
gi|120124 : TGCAGAATGAAGCATACCAATGCC----TTGGCGTACCACAACCCAAGCATA------------TGATTTC-AGGATGAAGATTACCATATA-GATATAggttaaata
gi|120125 : TGCAGGACGACGCGTATCGCAGCC----TTAGCGTACCGTTACCCAAGCGTG-C-----C------ATTTC-AGGACGAAttatccagtgggaa
gi|120126 : TGCAGAATGAAGCGTACCAATGCC----TTGGTGTACCACTACCCAAGCAAA-CAAATGCTG-ATGATTTC-AGTACGAAGATTACCATATGCAACATACATAGAGA
gi|120127 : TGCAGGACGAAGCATACCACTACT----TTGACATACCACT
gi|120128 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTACTACCCAAGCATA-CAATTTCTG-ATGATTTC-AGTACGAAGATGACCATATGCGACATACATATAGAtcaggatgaaaactactatatgtaaaatataaagt
gi|120129 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTATTACCCAAGCATA-CAATTTCTG-ATGATTTC-AGTACGAAGATGACCATATGCGACATACATATAGA
gi|120130 : TGCAGAATGAAGCGTACCAATGCA----TTGGCGTACCACTACCCAAGCATA-CAATTTCTG-ATGATTTC-AGTACGAAGATTACCATA
gi|120131 : TGAAGAATGAAGCATACCAATGCC----TTGGCGTACCACTACCCAAGCATT-CAATTTCTG-ATGATTTC-AGTACGAAGATTACCATATGCGACATACATA
gi|120132 : TGAAGAATGAAGCATACCAATGCC----TTGGCGTACCACTACCCAAGCATT-CAATTTCTG-ATGATTTC-AGTACGAAGATTACCATATGCGACATACATAataagtttagaatat
gi|120133 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTACTACCCAAGCATA-CAATTTCTG-ATGATTTC-AGTACGAATATGACCATATACGACATACATATAGAataagtttagaatat
gi|120134 : TGCAGAATGAAGCGTACCAATGCA----TTGGCGTTCCACTACCCAAGCATA-CAGTTTCTG-ATGATTTC-AGTACGAAGATTACCATATGCGACATACATATAGA
gi|120135 : TGCAGAATGAAGTGTACCACTGCCTGCATTATTGTACCACTA-CCAAG
gi|120136 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTACTACCCAAGCATA-CAATGTCTG-ATAATTTC-AGTACGAATATGACCACATGCGACATACATATAGAgatgaagcataccataaatgaaatat
gi|120137 : TGCAGAATGAAGCGTACAAATGCA----TTAGCATACCACTACTCAAGC------ATTTCTG-ATGATTTC-AGTACAAAGATTACCATATGCGACATACATATAGA
gi|120138 : GGACGAAGCGTACCACAGCC----TTACCGTAACA-GAACGAAGCGTACCAGTTTC----------C-AGGACGAAGCGTACCACAT
gi|120139 : GGACGAAGCGTACCACTGCC----TAACCGTACCAGGA-CGAAGCGTACCACTTTCT-----------AGGACGAAGCGTACCACATaaagattatatagggaaaat
gi|120140 : GGACGAAGCGTACCACTGCC----TTACCGTACCAGGA-CGAAGCGTACCAGTTTCT-----------AGGACGAAGCGTACCACATatagattatatagtgaaa
gi|120141 : GGACGAAGCGTACCACTGCC----TTACCGCACCAGGA-CAAAGCGTACCAGTTTCT-----------AGGACGAAG--TACCACATatagattatacagggaaaat
gi|120142 : GGACGAAGCGTACCACTGCC----TTACCGTACCAGGA-CGAAGTGTACCAGTTTCT-----------AGGACGAAGCGTACCACATatagattatatagggaaaat
gi|120143 : GACGAAGCGTACCACTGCT----AGGACG-----------AAGCATA-C-----CTG-----TTTCTAGGACGAAGCGTACCACATAT-ACAT-TATATAGatagattatatagggaaaat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|120144 ): CGTACCACTACATTTTCATACCAGATGCTTCTGTACCATTTAAAGAGGTTTCGTACCAATATGAAATATATATAGA
Alignments
lowQualScore : 33333333333333
lowQualScore : 0 3333 0 3 0 0 22222222222222 1 0 44 2
lowQualScore : . .... . . . . .............. . . .. .
lowQualScore : 6 3333 8 0 9 5 55555555555555 7 4 33 8
consensus : TGCAGGACGAAGCGTACCACTGCC----TTGGCGTACCACTACCCAAGCGTA-CAATTTCTG-ATGATTTC-AGGACGAAGNNTACCACATGCGACATACATATAGA
Reference ( family-702 ) : TGCAGGACGAAGCGTACCACTGCC----TTGGCGTACCACTACCCAAGCGTA-CAATTTCTG-ATGATTTC-AGGACGAAGNNTACCACATGCGACATACATATAGA
gi|120118 : TGCAGGACGAAGCGTACCACTGTC----TTTCCGTACCACTGCC------------TTTATGTACCATTTC-AGGACTAAACGTACCACAT
gi|120119 : TGCAGGACGAAGCGTACCACTGTC----TTAGCGTACCACTGCCTTTACGTA-C-----C------ATTTC-AGGACGAAGCATACCACatagattatatagtagtaaat
gi|120120 : TGCAGGACGAAGCGTACCACTGTC----TTTCCGTACCACTGCCTTTACGTA-C-----C------ATTTC-AGGACGAAGCGTACCACATAT-ATATA-ATATAGctatagattatatagtagtaaat
gi|120121 : TGCAGGACGAAGCGTACCACTGTC----TATCCGTACCACTGCCTTTACGTA-C-----C------ATTTC-AGGACGAAGCGTACCACATAT-ATGTA-ATATAGtagtaaat
gi|120122 : TGCAGGACAAAGCATACCACTGTC----TTTCCGTACCACT--------GT-------------------C-AGGACGAAGTGTACCACATtagtaaat
gi|120123 : TGCCGGACGAAGCATACCACTTCT----TTAGCGTATCACTACCCTTGCGTA-C-----C------ATTTC-AGGATGAAGAGTACCATAatagattatatagtagtaaat
gi|120124 : TGCAGAATGAAGCATACCAATGCC----TTGGCGTACCACAACCCAAGCAT------------ATGATTTC-AGGATGAAGATTACCATATA-GATATAggttaaata
gi|120125 : TGCAGGACGACGCGTATCGCAGCC----TTAGCGTACCGTTACCCAAGCGTG-C-----C------ATTTC-AGGACGAAttatccagtgggaa
gi|120126 : TGCAGAATGAAGCGTACCAATGCC----TTGGTGTACCACTACCCAAGCAAA-CAAATGCTG-ATGATTTC-AGTACGAAGATTACCATATGCAACATACATAGAGA
gi|120127 : TGCAGGACGAAGCATACCACTACT----TTGACATACCACT
gi|120128 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTACTACCCAAGCATA-CAATTTCTG-ATGATTTC-AGTACGAAGATGACCATATGCGACATACATATAGAtcaggatgaaaactactatatgtaaaatataaagt
gi|120129 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTATTACCCAAGCATA-CAATTTCTG-ATGATTTC-AGTACGAAGATGACCATATGCGACATACATATAGA
gi|120130 : TGCAGAATGAAGCGTACCAATGCA----TTGGCGTACCACTACCCAAGCATA-CAATTTCTG-ATGATTTC-AGTACGAAGATTACCATA
gi|120131 : TGAAGAATGAAGCATACCAATGCC----TTGGCGTACCACTACCCAAGCATT-CAATTTCTG-ATGATTTC-AGTACGAAGATTACCATATGCGACATACATA
gi|120132 : TGAAGAATGAAGCATACCAATGCC----TTGGCGTACCACTACCCAAGCATT-CAATTTCTG-ATGATTTC-AGTACGAAGATTACCATATGCGACATACATAataagtttagaatat
gi|120133 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTACTACCCAAGCATA-CAATTTCTG-ATGATTTC-AGTACGAATATGACCATATACGACATACATATAGAataagtttagaatat
gi|120134 : TGCAGAATGAAGCGTACCAATGCA----TTGGCGTTCCACTACCCAAGCATA-CAGTTTCTG-ATGATTTC-AGTACGAAGATTACCATATGCGACATACATATAGA
gi|120135 : TGCAGAATGAAGTGTACCACTGCCTGCATTATTGTACCACTA-CCAAG
gi|120136 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTACTACCCAAGCATA-CAATGTCTG-ATAATTTC-AGTACGAATATGACCACATGCGACATACATATAGAgatgaagcataccataaatgaaatat
gi|120137 : TGCAGAATGAAGCGTACAAATGCA----TTAGCATACCACTACTCAAGC------ATTTCTG-ATGATTTC-AGTACAAAGATTACCATATGCGACATACATATAGA
gi|120138 : GGACGAAGCGTACCACAGCC----TTACCGTAACA-GAACGAAGCGTACCAGTTTC----------C-AGGACGAAGCGTACCACAT
gi|120139 : GGACGAAGCGTACCACTGCC----TAACCGTACCAGGA-CGAAGCGTACCACTTTCT-----------AGGACGAAGCGTACCACATaaagattatatagggaaaat
gi|120140 : GGACGAAGCGTACCACTGCC----TTACCGTACCAGGA-CGAAGCGTACCAGTTTCT-----------AGGACGAAGCGTACCACATatagattatatagtgaaa
gi|120141 : GGACGAAGCGTACCACTGCC----TTACCGCACCAGGA-CAAAGCGTACCAGTTTCT-----------AGGACGAAG--TACCACATatagattatacagggaaaat
gi|120142 : GGACGAAGCGTACCACTGCC----TTACCGTACCAGGA-CGAAGTGTACCAGTTTCT-----------AGGACGAAGCGTACCACATatagattatatagggaaaat
gi|120143 : GACGAAGCGTACCACTGCT----AGGACG-----------AAGCATA-C-----CTG-----TTTCTAGGACGAAGCGTACCACATAT-ACAT-TATATAGatagattatatagggaaaat
blockSeqs : TGCA C CAAATGCTGATG T CA G
blockSeqs : . C CAATTTCTGATG . CG A
blockSeqs : . C CAATTTCTGATG . CG G
blockSeqs : . C CAATTTCTGATG . TG G
blockSeqs : . C CAATTTCTGATG . AG G
blockSeqs : . C CAATTTCTGATG . AT G
blockSeqs : . C CAATTTCTGATG . AT G
blockSeqs : . C CAGTTTCTGATG . AT G
blockSeqs : . C CAATGTCTGATA . AT G
blockSeqs : . C ATTTCTGATG . AT G
blockSeqs : . C CCACTTTCT . AT .
blockSeqs : . C CCAGTTTCT . AT .
blockSeqs : . C CCAGTTTCT . AT
blockSeqs : . C CCAGTTTCT . AT
blockSeqs : . C CCAGTTTC . AT
blockSeqs : . C CCTG . AT
blockSeqs : . A ATG . CG
blockSeqs : . . CC . CG
blockSeqs : . . CC . CG
blockSeqs : . . CC . CG
blockSeqs : . . CC . CG
blockSeqs : . . CC . .
blockSeqs : . . . .
blockSeqs : . .
blockSeqs : .
blockSeqCons : CAATTTCTGATG**
originalCons : TGCAGGACGAAGCGTACCACTGCC----TTGGCGTACCACTACCCAAGCGTA-CAATTTCTG-ATGATTTC-AGGACGAAGNNTACCACATGCGACATACATATAGA
finalCons : TGCAGGACGAAGCGTACCACTGCC----TTGGCGTACCACTACCCAAGCGTACAATTTCTGATG--ATTTC-AGGACGAAGNNTACCACATGCGACATACATATAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|120144 ): CGTACCACTACATTTTCATACCAGATGCTTCTGTACCATTTAAAGAGGTTTCGTACCAATATGAAATATATATAGA
Alignments
lowQualScore : 33333333333333
lowQualScore : 0 3333 0 3 0 0 22222222222222 1 0 44 2
lowQualScore : . .... . . . . .............. . . .. .
lowQualScore : 6 3333 8 0 9 5 55555555555555 7 4 33 8
consensus : TGCAGGACGAAGCGTACCACTGCC----TTGGCGTACCACTACCCAAGCGTA-CAATTTCTG-ATGATTTC-AGGACGAAGNNTACCACATGCGACATACATATAGA
Reference ( family-702 ) : TGCAGGACGAAGCGTACCACTGCC----TTGGCGTACCACTACCCAAGCGTA-CAATTTCTG-ATGATTTC-AGGACGAAGNNTACCACATGCGACATACATATAGA
gi|120118 : TGCAGGACGAAGCGTACCACTGTC----TTTCCGTACCACTGCC------------TTTATGTACCATTTC-AGGACTAAACGTACCACAT
gi|120119 : TGCAGGACGAAGCGTACCACTGTC----TTAGCGTACCACTGCCTTTACGTA-C-----C------ATTTC-AGGACGAAGCATACCACatagattatatagtagtaaat
gi|120120 : TGCAGGACGAAGCGTACCACTGTC----TTTCCGTACCACTGCCTTTACGTA-C-----C------ATTTC-AGGACGAAGCGTACCACATAT-ATATA-ATATAGctatagattatatagtagtaaat
gi|120121 : TGCAGGACGAAGCGTACCACTGTC----TATCCGTACCACTGCCTTTACGTA-C-----C------ATTTC-AGGACGAAGCGTACCACATAT-ATGTA-ATATAGtagtaaat
gi|120122 : TGCAGGACAAAGCATACCACTGTC----TTTCCGTACCACT--------GT-------------------C-AGGACGAAGTGTACCACATtagtaaat
gi|120123 : TGCCGGACGAAGCATACCACTTCT----TTAGCGTATCACTACCCTTGCGTA-C-----C------ATTTC-AGGATGAAGAGTACCATAatagattatatagtagtaaat
gi|120124 : TGCAGAATGAAGCATACCAATGCC----TTGGCGTACCACAACCCAAGCAT------------ATGATTTC-AGGATGAAGATTACCATATA-GATATAggttaaata
gi|120125 : TGCAGGACGACGCGTATCGCAGCC----TTAGCGTACCGTTACCCAAGCGTG-C-----C------ATTTC-AGGACGAAttatccagtgggaa
gi|120126 : TGCAGAATGAAGCGTACCAATGCC----TTGGTGTACCACTACCCAAGCAAA-CAAATGCTG-ATGATTTC-AGTACGAAGATTACCATATGCAACATACATAGAGA
gi|120127 : TGCAGGACGAAGCATACCACTACT----TTGACATACCACT
gi|120128 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTACTACCCAAGCATA-CAATTTCTG-ATGATTTC-AGTACGAAGATGACCATATGCGACATACATATAGAtcaggatgaaaactactatatgtaaaatataaagt
gi|120129 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTATTACCCAAGCATA-CAATTTCTG-ATGATTTC-AGTACGAAGATGACCATATGCGACATACATATAGA
gi|120130 : TGCAGAATGAAGCGTACCAATGCA----TTGGCGTACCACTACCCAAGCATA-CAATTTCTG-ATGATTTC-AGTACGAAGATTACCATA
gi|120131 : TGAAGAATGAAGCATACCAATGCC----TTGGCGTACCACTACCCAAGCATT-CAATTTCTG-ATGATTTC-AGTACGAAGATTACCATATGCGACATACATA
gi|120132 : TGAAGAATGAAGCATACCAATGCC----TTGGCGTACCACTACCCAAGCATT-CAATTTCTG-ATGATTTC-AGTACGAAGATTACCATATGCGACATACATAataagtttagaatat
gi|120133 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTACTACCCAAGCATA-CAATTTCTG-ATGATTTC-AGTACGAATATGACCATATACGACATACATATAGAataagtttagaatat
gi|120134 : TGCAGAATGAAGCGTACCAATGCA----TTGGCGTTCCACTACCCAAGCATA-CAGTTTCTG-ATGATTTC-AGTACGAAGATTACCATATGCGACATACATATAGA
gi|120135 : TGCAGAATGAAGTGTACCACTGCCTGCATTATTGTACCACTA-CCAAG
gi|120136 : TGCAGAATGAAGCGTACCAATGCC----TTGGCGTACTACTACCCAAGCATA-CAATGTCTG-ATAATTTC-AGTACGAATATGACCACATGCGACATACATATAGAgatgaagcataccataaatgaaatat
gi|120137 : TGCAGAATGAAGCGTACAAATGCA----TTAGCATACCACTACTCAAGC------ATTTCTG-ATGATTTC-AGTACAAAGATTACCATATGCGACATACATATAGA
gi|120138 : GGACGAAGCGTACCACAGCC----TTACCGTAACA-GAACGAAGCGTACCAGTTTC----------C-AGGACGAAGCGTACCACAT
gi|120139 : GGACGAAGCGTACCACTGCC----TAACCGTACCAGGA-CGAAGCGTACCACTTTCT-----------AGGACGAAGCGTACCACATaaagattatatagggaaaat
gi|120140 : GGACGAAGCGTACCACTGCC----TTACCGTACCAGGA-CGAAGCGTACCAGTTTCT-----------AGGACGAAGCGTACCACATatagattatatagtgaaa
gi|120141 : GGACGAAGCGTACCACTGCC----TTACCGCACCAGGA-CAAAGCGTACCAGTTTCT-----------AGGACGAAG--TACCACATatagattatacagggaaaat
gi|120142 : GGACGAAGCGTACCACTGCC----TTACCGTACCAGGA-CGAAGTGTACCAGTTTCT-----------AGGACGAAGCGTACCACATatagattatatagggaaaat
gi|120143 : GACGAAGCGTACCACTGCT----AGGACG-----------AAGCATA-C-----CTG-----TTTCTAGGACGAAGCGTACCACATAT-ACAT-TATATAGatagattatatagggaaaat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|120144 ): CGTACCACTACATTTTCATACCAGATGCTTCTGTACCATTTAAAGAGGTTTCGTACCAATATGAAATATATATAGA