lowQualScore : 11111111111 1 1
lowQualScore : 6 2 22 333 22 44 555555 3333 66666666666 1 44444 1 33 3 22 5 33 22 444 2 3 2 999999
lowQualScore : . . .. ... .. .. ...... .... ........... . ..... . .. . .. . .. .. ... . . . ......
lowQualScore : 0 8 99 555 88 22 555555 9999 55555555555 7 22222 7 33 6 88 6 66 88 444 1 7 1 666666
consensus : TGTAAAATGTGTCGT--CTACT---ATT--GN-AATTG------ACA----TATTCTTCTAGGAAA----CG-G---TCTA-T-----TTTTAGC-GCTTTC-CACAGTGATGA--AAATGAAAT--ACAC-GCGA-GTA-AACACACGAC-CTCTGATATT
Reference ( gi|17816 ) : TGTAGAATGTGTCAT--CTACT---ATT--GT-AATTG------ACA----TATTCTTCTAGGAAA----CT-G---TCTA-T-----TTTTAGC-GCTTTC-CACAGTGGTGA--AATTGAAAT--ACAC-GTGA-GGA-AACACGCAAT-CTCTGATATT
gi|17815 : TGTAAAATGTGTTTT--CTTCT---ATT--GC-AGTTG------ACA----TATTCTTCTAGGAAA----CA-T---TCTA-T-----TTTTAGC-ACTTTC-TACAGTGATGA--GAATGAAAA--ACAT-GCGA-GTA-AACACACAAC-CTCTGATATT
gi|17817 : TGTAAAATGTGTCAT--CTACT---ATT--GC-AATTG------ACA----TATTTTTCTAAGAAATGGTCT-AT--TCTA-T-----TTTTAGC-GCTTTT-CACAGTGATGA--AAATGAAAT--CCAC-ATGA-GTT-TACACACTGC-TTCTGATATT
gi|17819 : TGTAACATGAGTTGT--CTACT---ATT--GT-AATTG------ACAAAATTCTTCTTCTAGGAAA----CA-G---TCTA-T-----TGTTAGT-GCTTTC-CACTGTGATGA--AAATGAAAT--ATGC-ACGA--GA-AATACACGAC-CTCTGATA
gi|17818 : TGTAAAATTGGTTGT--CTACT---ATT--GT-AATTG------ACA----TATTCTTCTAAGAAA-----T-GTT-TTTT-T-----TTTTAGC-GTTTTT-CACAGGGATGA--AAATAAAAT--ACAT-GCGA-GTA-AATACATGAC-CTCTTATATT
gi|17820 : TGTAAAATGTGTCAT--CTACT---ATT--GT-AATTG------ACA----TATTCTTCTAGGGTA-----T-GATCTTTT-T-----TTTTAGC-ACTTTC-CAAAGTGATGA--AAATGAATT--ACAC-GCGATCTC-AACACATGAC-CTTTGATTTT
gi|17821 : TGTAAAATATGTCAT--CTACT---ATT--CT-AAATG------ACG----TATTCTTCCATAAAA-----T-A------A-T-----TATTAGC-ACTTTC-CACAGTAATAA--AAATATAAT--ACAC-GCGA-GTA-AACAC---ATCCTGTGATATT
gi|17822 : TGTAAAATGTGTCAT--CTACTGCTATT--GG-AATTG------ATA----TATTCTCCTGGGAAA----CT-G----CTG-TTGTTATTTTAGC-ACTTTT-CACATTGATGA--AGATGAAAT--GCAC-
gi|17824 : TGTAAAACATGTTGT--CAGTT---ATT--GA-AATTG------ACA----TTTTCTTCTGTAAAA----CA-G---TCTA-T-----TTTTAGC-ACCAT--CACCTTGGTGA--AAacg
gi|17823 : TGTAAAATGT--CATGTCTGCT---TTT--GA-AATGG------ACA----TATTCTTTAAGGAAA----GG-T---TCTA-T-----TTTTAGCAACCTT---GCATTGGTGG--AAATGTAATTCACACTGTTC-G-----CATGCTAT-CTCTGAatttaatttgtgtacagtcgcgttaacacattacctccgactat
gi|17825 : GTAAAATGTGTCGT--CTACT---ATT--GT-TATTA------ACA----T--TCTTCTAGGAAA----CT-G---TCAA-T-----TTTTAGC-GCTTCC-CGCAGTCATGA--AAATGAAA---A-AC-TTGA-GTA-AACACACCAC-CTCTGATATT
gi|17827 : GTAAAATGGGTCGT--CTA------TT--GT-AACTG------ACA----CATTCTTCTAGGAAA----CA-G---TCTA-T-----TTTTAGT-GCTTT
gi|17826 : GTAAAATGGGTC-----TACT---ATT--GT-AATTG-------------------TCTA-----------------CTA-T-----AGT-AAC-GCTTTC-CAAAGTGATGA--AAAT--AAT--ACAT-GCGA-GTA-AACACACAAC-CTCTGATATT
gi|17828 : TAAAATGGATCGT--CTACT---ATT--GC-AATTGCAACTGACA----CATTCATCAAGGAAA----CG-G---TCTA-T-----TTTTAGC-GC-TTC-CACAGT
gi|17829 : AAAATATGTTGT--CAATT---ATT--GT-AACTG------ACA----TATTCTTCTAGGAAA----CG-G---TCTA-T-----TTTGAGC-GCTTTG-CACAGTGATGA--AAATAAAAT--ACGC-GTGA-GTA-AACACATGAT-ATCTGATATTatg
gi|17830 : AAAATGGGTCAT--CTACT---ATT--GT-AATTG------ACA----CATTCTTCTAGGAAA----CA-G---TCTACT-----TTTTATC-GCTTTC-CATAGTAATGA--AAAT--AAT--ACAT-GCGA-GTA-AACACACTGC-CTCTGAT
gi|17831 : AATATGGCGT--TTACT---ATT--GA-AATCG------ACA----TATGCGTCAAAGAAA----ATGG---TATA-A-----CTCTAGC-ACTATCTCAC--TGGGGACTATTT--AAT--ACAC-ATCA-GTT-AACACATGGC-CTC-GATA
gi|17832 : aATGTATCGT--CAGCT---ATT--GA-AATTG------ACA----CATTCTTCGAAGAAA----CG-C---TCTA-T-----TTTTGGC-CCATTA-CAC
gi|17834 : ATGTGTTAT--CAGAT---ATT--GA-AAGTG------ACG----CAGTCTTCTAGGAAA----CG-G---TTTA-T-----TTTAAGC-
gi|17833 : ATGTTTTGT--CAACT---ACT--GA-AATTG------ACA----TAATCTTATAGGAAA----TC-G---TATA-------TTTTAGC-CCTATC-ccgatcacactga
gi|17835 : CT---ATTCTGTTAGTTG------ACA----TGATCTTTTAGGAAA----CA-G---TCTA-T-----TTTTAGC-ATCTTA-CACAGCGACAA--AAATG-CAT--ACAC----A-AGATAATACACGAC-CTCTGACATTaaacagcacacgagttaacattcaactctg
gi|17836 : TTG-------CA----TTTTCTTCTAGGAAG----CT-G---TCTA-T-----TT--------TTTT-CAC--TGATGA--CAATATAGT--ACAC-AAGA-GTT-AACACACGCC-CTCAAACATT
gi|17837 : A----TATTCTTTTAGGAAA----GG-G---TCTA-T-----TTTTAGT-GCTTTT-CACAGTGATGA--AAATGAAAT--AAAT-ACAA-GTA-AACACAGGAC-CTCTGATAT
gi|17838 : TTCTTGTAGGAAA----TG-G---TTTA-T-----ACTTAGC-ACTTTC-CACAGTAATGA--AAACAAAAT--ACAT-GCAA-GTA-AACACGCGGC-CTCTGACATT
gi|17839 : AA----CG-G---TCTA-T-----TTTTGCT-GCTTTC-CACAGAGATGA--AAATGAAAT--ACAC-TAGA-GTA-AACACACAGC-GTCTAATA
gi|17840 : -CACAGTGATGA--AAATGAAAT----AC-GCAA-ATA-AACAAACGAC-ATCTGATAT
gi|17841 : --ACAC-GTGA-GTA-AACACACAAC-CTCTGATATT
Alignments
lowQualScore : 333 1 555555 3333 1 0 22 55555 44444 1 1 33 22 555555 1 1 1 2 1
lowQualScore : ... . ...... .... . . .. ..... ..... . . .. .. ...... . . . . .
lowQualScore : 333 7 222222 7777 7 5 22 66666 00000 6 6 88 99 222222 7 8 4 3 9
consensus : TGTAAAATGTGTCGTCTACT---ATTGNAATTG------ACA----TATTCTTC-TAGGAAACGGTC--TA-----TT-----TTT-AGC-GCTTTC-CACAGTGATGAAAATGAAA------TA-CACGCGA-GTAAACACACGACCTCTGA-TATT
Reference ( family-701 ) : TGTAAAATGTGTCGTCTACT---ATTGNAATTG------ACA----TATTCTTC-TAGGAAACGGTC--TA-----TT-----TTT-AGC-GCTTTC-CACAGTGATGAAAATGAAA------TA-CACGCGA-GTAAACACACGACCTCTGA-TATT
gi|17815 : TGTAAAATGTGTTTTCTTCT---ATTGCAGTTG------ACA----TATTCTTC-TAGGAAACATTC--TA-----TT-----TTT-AGC-ACTTTC-TACAGTGATGAGAATGAAA------AA-CATGCGA-GTAAACACACAACCTCTGA-TATT
gi|17816 : TGTAGAATGTGTCATCTACT---ATTGTAATTG------ACA----TATTCTTC-TAGGAAACTGTC--TA-----TT-----TTT-AGC-GCTTTC-CACAGTGGTGAAATTGAAA------TA-CACGTGA-GGAAACACGCAATCTCTGA-TATT
gi|17817 : TGTAAAATGTGTCATCTACT---ATTGCAATTG------ACA----TATTTTTC-TAAGAAATGGTC--TATTCTATT-----TTT-AGC-GCTTTT-CACAGTGATGAAAATGAAA------TC-CACATGA-GTTTACACACTGCTTCTGA-TATT
gi|17818 : TGTAAAATTGGTTGTCTACT---ATTGTAATTG------ACA----TATTCTTC-TAAGAAATGTTT--TT-----TT-----TTTTAGC-GTTTTT-CACAGGGATGAAAATAAAA------TA-CATGCGA-GTAAATACATGACCTCTTA-TATT
gi|17819 : TGTAACATGAGTTGTCTACT---ATTGTAATTG------ACAAAATTCTTCTTC-TAGGAAACAGTC--TA-----TT-----GTT-AGT-GCTTTC-CACTGTGATGAAAATGAAA------TA-TGCACGA-G-AAATACACGACCTCTGA-TA
gi|17820 : TGTAAAATGTGTCATCTACT---ATTGTAATTG------ACA----TATTCTTC-TAGGGTATGATCTTTT-----TT-----TTT-AGC-ACTTTC-CAAAGTGATGAAAATGAAT------TA-CACGCGATCTCAACACATGACCTTTGA-TTTT
gi|17821 : TGTAAAATATGTCATCTACT---ATTCTAAATG------ACG----TATTCTTC-CATAAAATA------A-----TT-----ATT-AGC-ACTTTC-CACAGTAATAAAAATATAA------TA-CACGCGA-GTAAACACAT--CCTGTGA-TATT
gi|17822 : TGTAAAATGTGTCATCTACTGCTATTGGAATTG------ATA----TATTCTCC-TGGGAAACTG-C--TG-----TTGTTATTTT-AGC-ACTTTT-CACATTGATGAAGATGAAA------TG-CACACG
gi|17823 : TGTAAAATGTCATGTCTGCT---TTTGAAATGG------ACA----TATTCTTT-AAGGAAAGGTTC--TA-----TT-----TTT-AGCAACCTT---GCATTGGTGGAAATGTAA------TT-CACACT--GTTCGCATGCTATCTCTGA-
gi|17824 : TGTAAAACATGTTGTCAGTT---ATTGAAATTG------ACA----TTTTCTTC-TGTAAAACAGTC--TA-----TT-----TTT-AGC-ACCAT--CACCTTGGTGAAAATTTAATTTGTGTA-CAGTCGC-GTTAACACATTACCTCCGACTAT
gi|17825 : GTAAAATGTGTCGTCTACT---ATTGTTATTA------ACA----T--TCTTC-TAGGAAACTGTC--AA-----TT-----TTT-AGC-GCTTCC-CGCAGTCATGAAAATGAAA-------A--ACTTGA-GTAAACACACCACCTCTGA-TATT
gi|17826 : GTAAAATG-G--GTCTACT---ATTGTAATTG-------------------TC-TA---------C--TA-----TA-----GT--AAC-GCTTTC-CAAAGTGATGAAAAT--AA------TA-CATGCGA-GTAAACACACAACCTCTGA-TATT
gi|17827 : GTAAAATGGGTCGTCTA------TTGTAACTG------ACA----CATTCTTC-TAGGAAACAGTC--TA-----TT-----TTT-AGT-GCTTT
gi|17828 : TAAAATGGATCGTCTACT---ATTGCAATTGCAACTGACA----CATTCATC-AAGGAAACGGTC--TA-----TT-----TTT-AGC-GC-TTC-CACAGT-ATG
gi|17829 : AAAATATGTTGTCAATT---ATTGTAACTG------ACA----TATTCTTC-TAGGAAACGGTC--TA-----TT-----TTG-AGC-GCTTTG-CACAGTGATGAAAATAAAA------TA-CGCGTGA-GTAAACACATGATATCTGA-TATT
gi|17830 : AAAATGGGTCATCTACT---ATTGTAATTG------ACA----CATTCTTC-TAGGAAACAGTC--TAC----TT-----TTT-ATC-GCTTTC-CATAGTAATGAAAAT--AA------TA-CATGCGA-GTAAACACACTGCCTCTGA-
gi|17831 : AAATATGGCGTTTACT---ATTGAAATCG------ACA----TATGCGTCAAAGAAAATGGTA--TA-----AC-----TCT-AGC-ACTATCTCAC--TGGGGACTATTTAA------TA-CACATCA-GTTAACACATGGCCTC-GA-TA
gi|17832 : ATGTATCGTCAGCT---ATTGAAATTG------ACA----CATTCTTC-GAAGAAACGCTC--TA-----TT-----TTT-GGC-CCATTA-CAC
gi|17833 : ATGTTTTGTCAACT---ACTGAAATTG------ACA----TAATCTTA-TAGGAAATCGTA--TA------T-----TTT-AGC-CCT-----------------ATCAAA------CAGCACACGA-GTTAACATTCAA-CTCTG
gi|17834 : ATGTGTTATCAGAT---ATTGAAAGTG------ACG----CAGTCTTC-TAGGAAACGGTT--TA-----TT-----TTA-AGC-
gi|17835 : CT---GTT--AGTTG------ACA----TGATCTTT-TAGGAAACAGTC--TA-----TT-----TTT-AGC-ATCTTA-CACAGCGACAAAAATG-CA------TA-CACAAGA--T-AATACACGACCTCTGA-CATTccgatcacactga
gi|17836 : ctattTTG-------CA----TTTTCTTC-TAGGAAGCTGTC--TA-----TT-----TTT---------TT-CAC--TGATGACAATATAG------TA-CACAAGA-GTTAACACACGCCCTCAAA-CATT
gi|17837 : A----TATTCTTT-TAGGAAAGGGTC--TA-----TT-----TTT-AGT-GCTTTT-CACAGTGATGAAAATGAAA------TA-AATACAA-GTAAACACAGGACCTCTGA-TAT
gi|17838 : TTCTTG-TAGGAAATGGTT--TA-----TA-----CTT-AGC-ACTTTC-CACAGTAATGAAAACAAAA------TA-CATGCAA-GTAAACACGCGGCCTCTGA-CATT
gi|17839 : AACGGTC--TA-----TT-----TTT-GCT-GCTTTC-CACAGAGATGAAAATGAAA------TA-CACTAGA-GTAAACACACAGCGTCTAA-TA
gi|17840 : -CACAGTGATGAAAATGAAA------T---ACGCAA-ATAAACAAACGACATCTGA-TAT
gi|17841 : A-CACGTGA-GTAAACACACAACCTCTGA-TATT
Alignments
lowQualScore : 333 1 555555 3333 1 0 22 55555 44444 1 1 33 22 555555 1 1 1 2 1
lowQualScore : ... . ...... .... . . .. ..... ..... . . .. .. ...... . . . . .
lowQualScore : 333 7 222222 7777 7 5 22 66666 00000 6 6 88 99 222222 7 8 4 3 9
consensus : TGTAAAATGTGTCGTCTACT---ATTGNAATTG------ACA----TATTCTTC-TAGGAAACGGTC--TA-----TT-----TTT-AGC-GCTTTC-CACAGTGATGAAAATGAAA------TA-CACGCGA-GTAAACACACGACCTCTGA-TATT
Reference ( family-701 ) : TGTAAAATGTGTCGTCTACT---ATTGNAATTG------ACA----TATTCTTC-TAGGAAACGGTC--TA-----TT-----TTT-AGC-GCTTTC-CACAGTGATGAAAATGAAA------TA-CACGCGA-GTAAACACACGACCTCTGA-TATT
gi|17815 : TGTAAAATGTGTTTTCTTCT---ATTGCAGTTG------ACA----TATTCTTC-TAGGAAACATTC--TA-----TT-----TTT-AGC-ACTTTC-TACAGTGATGAGAATGAAA------AA-CATGCGA-GTAAACACACAACCTCTGA-TATT
gi|17816 : TGTAGAATGTGTCATCTACT---ATTGTAATTG------ACA----TATTCTTC-TAGGAAACTGTC--TA-----TT-----TTT-AGC-GCTTTC-CACAGTGGTGAAATTGAAA------TA-CACGTGA-GGAAACACGCAATCTCTGA-TATT
gi|17817 : TGTAAAATGTGTCATCTACT---ATTGCAATTG------ACA----TATTTTTC-TAAGAAATGGTC--TATTCTATT-----TTT-AGC-GCTTTT-CACAGTGATGAAAATGAAA------TC-CACATGA-GTTTACACACTGCTTCTGA-TATT
gi|17818 : TGTAAAATTGGTTGTCTACT---ATTGTAATTG------ACA----TATTCTTC-TAAGAAATGTTT--TT-----TT-----TTTTAGC-GTTTTT-CACAGGGATGAAAATAAAA------TA-CATGCGA-GTAAATACATGACCTCTTA-TATT
gi|17819 : TGTAACATGAGTTGTCTACT---ATTGTAATTG------ACAAAATTCTTCTTC-TAGGAAACAGTC--TA-----TT-----GTT-AGT-GCTTTC-CACTGTGATGAAAATGAAA------TA-TGCACGA-G-AAATACACGACCTCTGA-TA
gi|17820 : TGTAAAATGTGTCATCTACT---ATTGTAATTG------ACA----TATTCTTC-TAGGGTATGATCTTTT-----TT-----TTT-AGC-ACTTTC-CAAAGTGATGAAAATGAAT------TA-CACGCGATCTCAACACATGACCTTTGA-TTTT
gi|17821 : TGTAAAATATGTCATCTACT---ATTCTAAATG------ACG----TATTCTTC-CATAAAATA------A-----TT-----ATT-AGC-ACTTTC-CACAGTAATAAAAATATAA------TA-CACGCGA-GTAAACACAT--CCTGTGA-TATT
gi|17822 : TGTAAAATGTGTCATCTACTGCTATTGGAATTG------ATA----TATTCTCC-TGGGAAACTG-C--TG-----TTGTTATTTT-AGC-ACTTTT-CACATTGATGAAGATGAAA------TG-CACACG
gi|17823 : TGTAAAATGTCATGTCTGCT---TTTGAAATGG------ACA----TATTCTTT-AAGGAAAGGTTC--TA-----TT-----TTT-AGCAACCTT---GCATTGGTGGAAATGTAA------TT-CACACT--GTTCGCATGCTATCTCTGA-
gi|17824 : TGTAAAACATGTTGTCAGTT---ATTGAAATTG------ACA----TTTTCTTC-TGTAAAACAGTC--TA-----TT-----TTT-AGC-ACCAT--CACCTTGGTGAAAATTTAATTTGTGTA-CAGTCGC-GTTAACACATTACCTCCGACTAT
gi|17825 : GTAAAATGTGTCGTCTACT---ATTGTTATTA------ACA----T--TCTTC-TAGGAAACTGTC--AA-----TT-----TTT-AGC-GCTTCC-CGCAGTCATGAAAATGAAA-------A--ACTTGA-GTAAACACACCACCTCTGA-TATT
gi|17826 : GTAAAATG-G--GTCTACT---ATTGTAATTG-------------------TC-TA---------C--TA-----TA-----GT--AAC-GCTTTC-CAAAGTGATGAAAAT--AA------TA-CATGCGA-GTAAACACACAACCTCTGA-TATT
gi|17827 : GTAAAATGGGTCGTCTA------TTGTAACTG------ACA----CATTCTTC-TAGGAAACAGTC--TA-----TT-----TTT-AGT-GCTTT
gi|17828 : TAAAATGGATCGTCTACT---ATTGCAATTGCAACTGACA----CATTCATC-AAGGAAACGGTC--TA-----TT-----TTT-AGC-GC-TTC-CACAGT-ATG
gi|17829 : AAAATATGTTGTCAATT---ATTGTAACTG------ACA----TATTCTTC-TAGGAAACGGTC--TA-----TT-----TTG-AGC-GCTTTG-CACAGTGATGAAAATAAAA------TA-CGCGTGA-GTAAACACATGATATCTGA-TATT
gi|17830 : AAAATGGGTCATCTACT---ATTGTAATTG------ACA----CATTCTTC-TAGGAAACAGTC--TAC----TT-----TTT-ATC-GCTTTC-CATAGTAATGAAAAT--AA------TA-CATGCGA-GTAAACACACTGCCTCTGA-
gi|17831 : AAATATGGCGTTTACT---ATTGAAATCG------ACA----TATGCGTCAAAGAAAATGGTA--TA-----AC-----TCT-AGC-ACTATCTCAC--TGGGGACTATTTAA------TA-CACATCA-GTTAACACATGGCCTC-GA-TA
gi|17832 : ATGTATCGTCAGCT---ATTGAAATTG------ACA----CATTCTTC-GAAGAAACGCTC--TA-----TT-----TTT-GGC-CCATTA-CAC
gi|17833 : ATGTTTTGTCAACT---ACTGAAATTG------ACA----TAATCTTA-TAGGAAATCGTA--TA------T-----TTT-AGC-CCT-----------------ATCAAA------CAGCACACGA-GTTAACATTCAA-CTCTG
gi|17834 : ATGTGTTATCAGAT---ATTGAAAGTG------ACG----CAGTCTTC-TAGGAAACGGTT--TA-----TT-----TTA-AGC-
gi|17835 : CT---GTT--AGTTG------ACA----TGATCTTT-TAGGAAACAGTC--TA-----TT-----TTT-AGC-ATCTTA-CACAGCGACAAAAATG-CA------TA-CACAAGA--T-AATACACGACCTCTGA-CATTccgatcacactga
gi|17836 : ctattTTG-------CA----TTTTCTTC-TAGGAAGCTGTC--TA-----TT-----TTT---------TT-CAC--TGATGACAATATAG------TA-CACAAGA-GTTAACACACGCCCTCAAA-CATT
gi|17837 : A----TATTCTTT-TAGGAAAGGGTC--TA-----TT-----TTT-AGT-GCTTTT-CACAGTGATGAAAATGAAA------TA-AATACAA-GTAAACACAGGACCTCTGA-TAT
gi|17838 : TTCTTG-TAGGAAATGGTT--TA-----TA-----CTT-AGC-ACTTTC-CACAGTAATGAAAACAAAA------TA-CATGCAA-GTAAACACGCGGCCTCTGA-CATT
gi|17839 : AACGGTC--TA-----TT-----TTT-GCT-GCTTTC-CACAGAGATGAAAATGAAA------TA-CACTAGA-GTAAACACACAGCGTCTAA-TA
gi|17840 : -CACAGTGATGAAAATGAAA------T---ACGCAA-ATAAACAAACGACATCTGA-TAT
gi|17841 : A-CACGTGA-GTAAACACACAACCTCTGA-TATT
blockSeqs : GCT T CAACTG AAAT A TT TTCTA GTTAT T A CT GA TTTGTG G T A A C
blockSeqs : . C . . . . C . . . C GA . . . T T .
blockSeqs : . T . . . . . . . . T AA . . . A G .
blockSeqs : . T . . . . . . . . T GA . . . A G .
blockSeqs : . T . . . . . . . . C GA . . . C G .
blockSeqs : . T . . . . . . . . C AT . . . A T .
blockSeqs : . G . . . . . . . . C GA . . . T T .
blockSeqs : . A . . . . . . . . T GT . . . T C .
blockSeqs : . A . . . . . . . . C TT . . . A A .
blockSeqs : . T . . . . . . . . C GA . . . A G .
blockSeqs : . T . . . . . . . . C AA . . . A T .
blockSeqs : . T . . . . . . . . G TT . . . A G .
blockSeqs : . C . . . . . . . . C CA . . . T A .
blockSeqs : . T . . . . . . . . A AT . . . T G .
blockSeqs : . T . . . . . . . . A GA . . . T G .
blockSeqs : . A . . . . . . . . T AA . . . A G .
blockSeqs : . A . . . . . . . . T GA . . . A G .
blockSeqs : . A . . . . . . . . C GA . . . A A .
blockSeqs : . A . . . . . . . . C G . . . A G .
blockSeqs : . . . . . . . . . . . . . . . A A .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : TGTAAAATGTGTCGTCTACT---ATTGNAATTG------ACA----TATTCTTC-TAGGAAACGGTC--TA-----TT-----TTT-AGC-GCTTTC-CACAGTGATGAAAATGAAA------TA-CACGCGA-GTAAACACACGACCTCTGA-TATT
finalCons : TGTAAAATGTGTCGTCTACT---ATTGNAATTG------ACA----TATTCTTC-TAGGAAACGGTC--TA-----TT-----TTT-AGC-GCTTTC-CACAGTGATGAAAATGAAA------TA-CACGCGA-GTAAACACACGACCTCTGA-TATT
Alignments
lowQualScore : 333 1 555555 3333 1 0 22 55555 44444 1 1 33 22 555555 1 1 1 2 1
lowQualScore : ... . ...... .... . . .. ..... ..... . . .. .. ...... . . . . .
lowQualScore : 333 7 222222 7777 7 5 22 66666 00000 6 6 88 99 222222 7 8 4 3 9
consensus : TGTAAAATGTGTCGTCTACT---ATTGNAATTG------ACA----TATTCTTC-TAGGAAACGGTC--TA-----TT-----TTT-AGC-GCTTTC-CACAGTGATGAAAATGAAA------TA-CACGCGA-GTAAACACACGACCTCTGA-TATT
Reference ( family-701 ) : TGTAAAATGTGTCGTCTACT---ATTGNAATTG------ACA----TATTCTTC-TAGGAAACGGTC--TA-----TT-----TTT-AGC-GCTTTC-CACAGTGATGAAAATGAAA------TA-CACGCGA-GTAAACACACGACCTCTGA-TATT
gi|17815 : TGTAAAATGTGTTTTCTTCT---ATTGCAGTTG------ACA----TATTCTTC-TAGGAAACATTC--TA-----TT-----TTT-AGC-ACTTTC-TACAGTGATGAGAATGAAA------AA-CATGCGA-GTAAACACACAACCTCTGA-TATT
gi|17816 : TGTAGAATGTGTCATCTACT---ATTGTAATTG------ACA----TATTCTTC-TAGGAAACTGTC--TA-----TT-----TTT-AGC-GCTTTC-CACAGTGGTGAAATTGAAA------TA-CACGTGA-GGAAACACGCAATCTCTGA-TATT
gi|17817 : TGTAAAATGTGTCATCTACT---ATTGCAATTG------ACA----TATTTTTC-TAAGAAATGGTC--TATTCTATT-----TTT-AGC-GCTTTT-CACAGTGATGAAAATGAAA------TC-CACATGA-GTTTACACACTGCTTCTGA-TATT
gi|17818 : TGTAAAATTGGTTGTCTACT---ATTGTAATTG------ACA----TATTCTTC-TAAGAAATGTTT--TT-----TT-----TTTTAGC-GTTTTT-CACAGGGATGAAAATAAAA------TA-CATGCGA-GTAAATACATGACCTCTTA-TATT
gi|17819 : TGTAACATGAGTTGTCTACT---ATTGTAATTG------ACAAAATTCTTCTTC-TAGGAAACAGTC--TA-----TT-----GTT-AGT-GCTTTC-CACTGTGATGAAAATGAAA------TA-TGCACGA-G-AAATACACGACCTCTGA-TA
gi|17820 : TGTAAAATGTGTCATCTACT---ATTGTAATTG------ACA----TATTCTTC-TAGGGTATGATCTTTT-----TT-----TTT-AGC-ACTTTC-CAAAGTGATGAAAATGAAT------TA-CACGCGATCTCAACACATGACCTTTGA-TTTT
gi|17821 : TGTAAAATATGTCATCTACT---ATTCTAAATG------ACG----TATTCTTC-CATAAAATA------A-----TT-----ATT-AGC-ACTTTC-CACAGTAATAAAAATATAA------TA-CACGCGA-GTAAACACAT--CCTGTGA-TATT
gi|17822 : TGTAAAATGTGTCATCTACTGCTATTGGAATTG------ATA----TATTCTCC-TGGGAAACTG-C--TG-----TTGTTATTTT-AGC-ACTTTT-CACATTGATGAAGATGAAA------TG-CACACG
gi|17823 : TGTAAAATGTCATGTCTGCT---TTTGAAATGG------ACA----TATTCTTT-AAGGAAAGGTTC--TA-----TT-----TTT-AGCAACCTT---GCATTGGTGGAAATGTAA------TT-CACACT--GTTCGCATGCTATCTCTGA-
gi|17824 : TGTAAAACATGTTGTCAGTT---ATTGAAATTG------ACA----TTTTCTTC-TGTAAAACAGTC--TA-----TT-----TTT-AGC-ACCAT--CACCTTGGTGAAAATTTAATTTGTGTA-CAGTCGC-GTTAACACATTACCTCCGACTAT
gi|17825 : GTAAAATGTGTCGTCTACT---ATTGTTATTA------ACA----T--TCTTC-TAGGAAACTGTC--AA-----TT-----TTT-AGC-GCTTCC-CGCAGTCATGAAAATGAAA-------A--ACTTGA-GTAAACACACCACCTCTGA-TATT
gi|17826 : GTAAAATG-G--GTCTACT---ATTGTAATTG-------------------TC-TA---------C--TA-----TA-----GT--AAC-GCTTTC-CAAAGTGATGAAAAT--AA------TA-CATGCGA-GTAAACACACAACCTCTGA-TATT
gi|17827 : GTAAAATGGGTCGTCTA------TTGTAACTG------ACA----CATTCTTC-TAGGAAACAGTC--TA-----TT-----TTT-AGT-GCTTT
gi|17828 : TAAAATGGATCGTCTACT---ATTGCAATTGCAACTGACA----CATTCATC-AAGGAAACGGTC--TA-----TT-----TTT-AGC-GC-TTC-CACAGT-ATG
gi|17829 : AAAATATGTTGTCAATT---ATTGTAACTG------ACA----TATTCTTC-TAGGAAACGGTC--TA-----TT-----TTG-AGC-GCTTTG-CACAGTGATGAAAATAAAA------TA-CGCGTGA-GTAAACACATGATATCTGA-TATT
gi|17830 : AAAATGGGTCATCTACT---ATTGTAATTG------ACA----CATTCTTC-TAGGAAACAGTC--TAC----TT-----TTT-ATC-GCTTTC-CATAGTAATGAAAAT--AA------TA-CATGCGA-GTAAACACACTGCCTCTGA-
gi|17831 : AAATATGGCGTTTACT---ATTGAAATCG------ACA----TATGCGTCAAAGAAAATGGTA--TA-----AC-----TCT-AGC-ACTATCTCAC--TGGGGACTATTTAA------TA-CACATCA-GTTAACACATGGCCTC-GA-TA
gi|17832 : ATGTATCGTCAGCT---ATTGAAATTG------ACA----CATTCTTC-GAAGAAACGCTC--TA-----TT-----TTT-GGC-CCATTA-CAC
gi|17833 : ATGTTTTGTCAACT---ACTGAAATTG------ACA----TAATCTTA-TAGGAAATCGTA--TA------T-----TTT-AGC-CCT-----------------ATCAAA------CAGCACACGA-GTTAACATTCAA-CTCTG
gi|17834 : ATGTGTTATCAGAT---ATTGAAAGTG------ACG----CAGTCTTC-TAGGAAACGGTT--TA-----TT-----TTA-AGC-
gi|17835 : CT---GTT--AGTTG------ACA----TGATCTTT-TAGGAAACAGTC--TA-----TT-----TTT-AGC-ATCTTA-CACAGCGACAAAAATG-CA------TA-CACAAGA--T-AATACACGACCTCTGA-CATTccgatcacactga
gi|17836 : ctattTTG-------CA----TTTTCTTC-TAGGAAGCTGTC--TA-----TT-----TTT---------TT-CAC--TGATGACAATATAG------TA-CACAAGA-GTTAACACACGCCCTCAAA-CATT
gi|17837 : A----TATTCTTT-TAGGAAAGGGTC--TA-----TT-----TTT-AGT-GCTTTT-CACAGTGATGAAAATGAAA------TA-AATACAA-GTAAACACAGGACCTCTGA-TAT
gi|17838 : TTCTTG-TAGGAAATGGTT--TA-----TA-----CTT-AGC-ACTTTC-CACAGTAATGAAAACAAAA------TA-CATGCAA-GTAAACACGCGGCCTCTGA-CATT
gi|17839 : AACGGTC--TA-----TT-----TTT-GCT-GCTTTC-CACAGAGATGAAAATGAAA------TA-CACTAGA-GTAAACACACAGCGTCTAA-TA
gi|17840 : -CACAGTGATGAAAATGAAA------T---ACGCAA-ATAAACAAACGACATCTGA-TAT
gi|17841 : A-CACGTGA-GTAAACACACAACCTCTGA-TATT