lowQualScore : 1
lowQualScore : 444444 1 2 9
lowQualScore : ...... . . .
lowQualScore : 333333 5 1 0
consensus : TTTTTTTTGTGATGAATATCTTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCANGTATCAATACAAGCTATATAAATTT
Reference ( gi|61580 ) : TTTTTTTTGTGATGAATATCTTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTATCAATACAAGCTATATAAATTT
gi|61581 : TTTTTTTTGTGATGAATATCTTTTATTCCAT--AAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTATCAATATAAGCTGTATA
gi|61582 : TTTTTTTTGTGATTAATATATTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAAATGTTCATGTATCAATACAAGCTctt
gi|61583 : TTTTCTTTGTGATGAGTATCTTTTATTCCATGTAACCCATA------ATACAATGTTATACA-AAAACTATTCATGTATCAATACAATCTATATA
gi|61584 : TTTCATTTTTGATGAATATCTTTTATTACATGTAAGACATA------ATACAATGTTATACG-AAATCTGTTCATTTATCAATACAAGCTATATAAATTTtttt
gi|61585 : TTTTTTTTGTGATGAATATATTTTATTCCATGTAATACATA------ATACAATGTTATAC--AAAACTATTCAGGTATCAATACAAACACTAT-AATTT
gi|61586 : TTTTTTCTGTAATGCATTTCTTTTATTCCAAGGAAGACATA------ATACACTGTTATACA-AAAACTGTTTCTGTATCAATACAAGCTATATA
gi|61587 : TCTTTTTTCTGATGAATAGCTTTTGTTCCGTGTAAAACATA------ATACAATGTTATACA-AAAACTGTTCAGGTGTTAATGCAActtt
gi|61588 : TTTTTTTTTTGATGAATATCTTTTATTCCATGTAAGACATA------ATACAATGTTATACACAAAACT
gi|61589 : TTTTTTGTGTGATGAATATACTTTATTGCATGTAAGATATA------ATACAATATTAAACA-TAAATTGTTCAGATATCAATACGAACAATATA
gi|61590 : TTTTTATTGTGATGAATATATTTTATTCCATGTCAGATATA------ATATA
gi|61591 : TTGTTTTGTGATAAA-ACCGTTCATTCCATGTAAGACATA------ATACAGTGCTATAGA-AAAACTGTTCAGGTGTCAATACATGCTGT
gi|61593 : TTGTTTTGTAATGAATATATTTTATTCCATCAAAGACAAA------ATGCAATCTTATGCA-AAAA-TATTCAGGTATCAATACAAACACTAT-AATTTttcattt
gi|61592 : TTCTTTTGTGATGAATATCTTTTATTCCATGTAAGACTTA------ATACAATTGTATACC-GAA----TCCATG-ATC
gi|61594 : TTTGTTTTTGATGAATTTCTTTTATCCCATGTAAGACATA------ACACACCATTATACA-AA
gi|61595 : TTTTGTGTGATGAATACATTTTATTACATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTAACAATACAAGCTATAT-AATTT
gi|61596 : TTTTTTGTGATAAATATCTTTTATTTCAAGTAAGACATA------ATACAGTATTATACA-AAAGTTGTTCAGGTATCAATATAAACTGTAT-GATTT
gi|61597 : TTTATTGTGATGAATATCTTTTATTTCATGAAAGGCATA------ATACAATGTTTTACA-AAAACTGTTCATGTATCAA
gi|61598 : TTTTTTCTGATGAATAGCTTTTGTTCCGTGTAAAACATA------ATACAATGTTATACA-AAAACTGTTCAGGTGTAAATGCAAAC
gi|61599 : TTTTTGTGATGAATAGCTTTTATTCCTTGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTATCAACACAAGCTATAT-AATTT
gi|61600 : TTTTTGTGATGAATATCTTTCAATCCATTTAAGACATA------ATACAATGTTATATA-CATACTGTTCAAATATAAATACGAACAATATA
gi|61601 : TTTTGTGAAGAAT-TTATTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTATCAATACAAGCTATAT-AATTT
gi|61602 : TTGTTACTGATACATTTTGCTCCATGTAAGACATA------ATACACTGTTATACA-AAGGTTGTTCAGGTATCAATATAA
gi|61603 : GTG-TGAATATCTTTAATTCCATGTAAGACATA------ACACAATGTTATACA-AAAACTGTACATGTATCAATACAAGCTATATtggatatgattt
gi|61604 : GATGAATATCTTTTATTCCATGCAAGACATA------ATACAATGTTATTCA-AAAATGGTTCAGGTATCAATACAAACTACAT-GATTTtattt
gi|61605 : GAAAAACTTTTATTCCATGTGAGGCATACGAGTAATATACTGTTATACA-CAAAATGTTCGGGTATCAATAAAAGCTATAT-AATTT
gi|61606 : AATATGTTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCGTGTATCAATACAAGCTATAT
gi|61607 : TTTTATTCCATGTAAGACATA------ATACAATGTTATACC-AAAACTGTTCATGTATCAATACAtattt
Alignments
lowQualScore : 1
lowQualScore : 444444 1 1 7
lowQualScore : ...... . . .
lowQualScore : 111111 5 0 1
consensus : TTTTTTTTGTGATGAATATCTTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCANGTATCAATACAAGCTATATAAATTT
Reference ( family-683 ) : TTTTTTTTGTGATGAATATCTTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCANGTATCAATACAAGCTATATAAATTT
gi|61580 : TTTTTTTTGTGATGAATATCTTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTATCAATACAAGCTATATAAATTT
gi|61581 : TTTTTTTTGTGATGAATATCTTTTATTCCAT--AAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTATCAATATAAGCTGTATA
gi|61582 : TTTTTTTTGTGATTAATATATTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAAATGTTCATGTATCAATACAAGCTctt
gi|61583 : TTTTCTTTGTGATGAGTATCTTTTATTCCATGTAACCCATA------ATACAATGTTATACA-AAAACTATTCATGTATCAATACAATCTATATA
gi|61584 : TTTCATTTTTGATGAATATCTTTTATTACATGTAAGACATA------ATACAATGTTATACG-AAATCTGTTCATTTATCAATACAAGCTATATAAATTTtttt
gi|61585 : TTTTTTTTGTGATGAATATATTTTATTCCATGTAATACATA------ATACAATGTTATAC--AAAACTATTCAGGTATCAATACAAACACTAT-AATTT
gi|61586 : TTTTTTCTGTAATGCATTTCTTTTATTCCAAGGAAGACATA------ATACACTGTTATACA-AAAACTGTTTCTGTATCAATACAAGCTATATA
gi|61587 : TCTTTTTTCTGATGAATAGCTTTTGTTCCGTGTAAAACATA------ATACAATGTTATACA-AAAACTGTTCAGGTGTTAATGCAActtt
gi|61588 : TTTTTTTTTTGATGAATATCTTTTATTCCATGTAAGACATA------ATACAATGTTATACACAAAACT
gi|61589 : TTTTTTGTGTGATGAATATACTTTATTGCATGTAAGATATA------ATACAATATTAAACA-TAAATTGTTCAGATATCAATACGAACAATATA
gi|61590 : TTTTTATTGTGATGAATATATTTTATTCCATGTCAGATATA------ATATA
gi|61591 : TTGTTTTGTGATAAA-ACCGTTCATTCCATGTAAGACATA------ATACAGTGCTATAGA-AAAACTGTTCAGGTGTCAATACATGCTGT
gi|61592 : TTCTTTTGTGATGAATATCTTTTATTCCATGTAAGACTTA------ATACAATTGTATACttcattt
gi|61593 : TTGTTTTGTAATGAATATATTTTATTCCATCAAAGACAAA------ATGCAATCTTATGCA-AAAA-TATTCAGGTATCAATACAAACACTAT-AATTTcgaatccatgatc
gi|61594 : TTTGTTTTTGATGAATTTCTTTTATCCCATGTAAGACATA------ACACACCATTATACA-AA
gi|61595 : TTTTGTGTGATGAATACATTTTATTACATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTAACAATACAAGCTATAT-AATTT
gi|61596 : TTTTTTGTGATAAATATCTTTTATTTCAAGTAAGACATA------ATACAGTATTATACA-AAAGTTGTTCAGGTATCAATATAAACTGTAT-GATTT
gi|61597 : TTTATTGTGATGAATATCTTTTATTTCATGAAAGGCATA------ATACAATGTTTTACA-AAAACTGTTCATGTATCAA
gi|61598 : TTTTTTCTGATGAATAGCTTTTGTTCCGTGTAAAACATA------ATACAATGTTATACA-AAAACTGTTCAGGTGTAAATGCAAAC
gi|61599 : TTTTTGTGATGAATAGCTTTTATTCCTTGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTATCAACACAAGCTATAT-AATTT
gi|61600 : TTTTTGTGATGAATATCTTTCAATCCATTTAAGACATA------ATACAATGTTATATA-CATACTGTTCAAATATAAATACGAACAATATA
gi|61601 : TTTTGTGAAGAAT-TTATTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTATCAATACAAGCTATAT-AATTT
gi|61602 : TTGTTACTGATACATTTTGCTCCATGTAAGACATA------ATACACTGTTATACA-AAGGTTGTTCAGGTATCAATATAA
gi|61603 : GTG-TGAATATCTTTAATTCCATGTAAGACATA------ACACAATGTTATACA-AAAACTGTACATGTATCAATACAAGCTATATtggatatgattt
gi|61604 : GATGAATATCTTTTATTCCATGCAAGACATA------ATACAATGTTATTCA-AAAATGGTTCAGGTATCAATACAAACTACAT-GATTTtattt
gi|61605 : GAAAAACTTTTATTCCATGTGAGGCATACGAGTAATATACTGTTATACA-CAAAATGTTCGGGTATCAATAAAAGCTATAT-AATTT
gi|61606 : AATATGTTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCGTGTATCAATACAAGCTATAT
gi|61607 : TTTTATTCCATGTAAGACATA------ATACAATGTTATACC-AAAACTGTTCATGTATCAATACAtattt
Alignments
lowQualScore : 1
lowQualScore : 444444 1 1 7
lowQualScore : ...... . . .
lowQualScore : 111111 5 0 1
consensus : TTTTTTTTGTGATGAATATCTTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCANGTATCAATACAAGCTATATAAATTT
Reference ( family-683 ) : TTTTTTTTGTGATGAATATCTTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCANGTATCAATACAAGCTATATAAATTT
gi|61580 : TTTTTTTTGTGATGAATATCTTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTATCAATACAAGCTATATAAATTT
gi|61581 : TTTTTTTTGTGATGAATATCTTTTATTCCAT--AAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTATCAATATAAGCTGTATA
gi|61582 : TTTTTTTTGTGATTAATATATTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAAATGTTCATGTATCAATACAAGCTctt
gi|61583 : TTTTCTTTGTGATGAGTATCTTTTATTCCATGTAACCCATA------ATACAATGTTATACA-AAAACTATTCATGTATCAATACAATCTATATA
gi|61584 : TTTCATTTTTGATGAATATCTTTTATTACATGTAAGACATA------ATACAATGTTATACG-AAATCTGTTCATTTATCAATACAAGCTATATAAATTTtttt
gi|61585 : TTTTTTTTGTGATGAATATATTTTATTCCATGTAATACATA------ATACAATGTTATAC--AAAACTATTCAGGTATCAATACAAACACTAT-AATTT
gi|61586 : TTTTTTCTGTAATGCATTTCTTTTATTCCAAGGAAGACATA------ATACACTGTTATACA-AAAACTGTTTCTGTATCAATACAAGCTATATA
gi|61587 : TCTTTTTTCTGATGAATAGCTTTTGTTCCGTGTAAAACATA------ATACAATGTTATACA-AAAACTGTTCAGGTGTTAATGCAActtt
gi|61588 : TTTTTTTTTTGATGAATATCTTTTATTCCATGTAAGACATA------ATACAATGTTATACACAAAACT
gi|61589 : TTTTTTGTGTGATGAATATACTTTATTGCATGTAAGATATA------ATACAATATTAAACA-TAAATTGTTCAGATATCAATACGAACAATATA
gi|61590 : TTTTTATTGTGATGAATATATTTTATTCCATGTCAGATATA------ATATA
gi|61591 : TTGTTTTGTGATAAA-ACCGTTCATTCCATGTAAGACATA------ATACAGTGCTATAGA-AAAACTGTTCAGGTGTCAATACATGCTGT
gi|61592 : TTCTTTTGTGATGAATATCTTTTATTCCATGTAAGACTTA------ATACAATTGTATACttcattt
gi|61593 : TTGTTTTGTAATGAATATATTTTATTCCATCAAAGACAAA------ATGCAATCTTATGCA-AAAA-TATTCAGGTATCAATACAAACACTAT-AATTTcgaatccatgatc
gi|61594 : TTTGTTTTTGATGAATTTCTTTTATCCCATGTAAGACATA------ACACACCATTATACA-AA
gi|61595 : TTTTGTGTGATGAATACATTTTATTACATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTAACAATACAAGCTATAT-AATTT
gi|61596 : TTTTTTGTGATAAATATCTTTTATTTCAAGTAAGACATA------ATACAGTATTATACA-AAAGTTGTTCAGGTATCAATATAAACTGTAT-GATTT
gi|61597 : TTTATTGTGATGAATATCTTTTATTTCATGAAAGGCATA------ATACAATGTTTTACA-AAAACTGTTCATGTATCAA
gi|61598 : TTTTTTCTGATGAATAGCTTTTGTTCCGTGTAAAACATA------ATACAATGTTATACA-AAAACTGTTCAGGTGTAAATGCAAAC
gi|61599 : TTTTTGTGATGAATAGCTTTTATTCCTTGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTATCAACACAAGCTATAT-AATTT
gi|61600 : TTTTTGTGATGAATATCTTTCAATCCATTTAAGACATA------ATACAATGTTATATA-CATACTGTTCAAATATAAATACGAACAATATA
gi|61601 : TTTTGTGAAGAAT-TTATTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTATCAATACAAGCTATAT-AATTT
gi|61602 : TTGTTACTGATACATTTTGCTCCATGTAAGACATA------ATACACTGTTATACA-AAGGTTGTTCAGGTATCAATATAA
gi|61603 : GTG-TGAATATCTTTAATTCCATGTAAGACATA------ACACAATGTTATACA-AAAACTGTACATGTATCAATACAAGCTATATtggatatgattt
gi|61604 : GATGAATATCTTTTATTCCATGCAAGACATA------ATACAATGTTATTCA-AAAATGGTTCAGGTATCAATACAAACTACAT-GATTTtattt
gi|61605 : GAAAAACTTTTATTCCATGTGAGGCATACGAGTAATATACTGTTATACA-CAAAATGTTCGGGTATCAATAAAAGCTATAT-AATTT
gi|61606 : AATATGTTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCGTGTATCAATACAAGCTATAT
gi|61607 : TTTTATTCCATGTAAGACATA------ATACAATGTTATACC-AAAACTGTTCATGTATCAATACAtattt
blockSeqs : CGAGTA C T A
blockSeqs : . . T A
blockSeqs : . . T A
blockSeqs : . . T A
blockSeqs : . . G A
blockSeqs : . . T A
blockSeqs : . . G .
blockSeqs : . . G .
blockSeqs : . . G .
blockSeqs : . . G .
blockSeqs : . . T .
blockSeqs : . . G .
blockSeqs : . . T .
blockSeqs : . . G .
blockSeqs : . . T
blockSeqs : . . A
blockSeqs : . . T
blockSeqs : . . G
blockSeqs : . . T
blockSeqs : . . G
blockSeqs : . . G
blockSeqs : . . T
blockSeqs : . . T
blockSeqs : . .
blockSeqs : . .
blockSeqs : .
blockSeqs : .
blockSeqCons :
originalCons : TTTTTTTTGTGATGAATATCTTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCANGTATCAATACAAGCTATATAAATTT
finalCons : TTTTTTTTGTGATGAATATCTTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCANGTATCAATACAAGCTATATAAATTT
Alignments
lowQualScore : 1
lowQualScore : 444444 1 1 7
lowQualScore : ...... . . .
lowQualScore : 111111 5 0 1
consensus : TTTTTTTTGTGATGAATATCTTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCANGTATCAATACAAGCTATATAAATTT
Reference ( family-683 ) : TTTTTTTTGTGATGAATATCTTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCANGTATCAATACAAGCTATATAAATTT
gi|61580 : TTTTTTTTGTGATGAATATCTTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTATCAATACAAGCTATATAAATTT
gi|61581 : TTTTTTTTGTGATGAATATCTTTTATTCCAT--AAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTATCAATATAAGCTGTATA
gi|61582 : TTTTTTTTGTGATTAATATATTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAAATGTTCATGTATCAATACAAGCTctt
gi|61583 : TTTTCTTTGTGATGAGTATCTTTTATTCCATGTAACCCATA------ATACAATGTTATACA-AAAACTATTCATGTATCAATACAATCTATATA
gi|61584 : TTTCATTTTTGATGAATATCTTTTATTACATGTAAGACATA------ATACAATGTTATACG-AAATCTGTTCATTTATCAATACAAGCTATATAAATTTtttt
gi|61585 : TTTTTTTTGTGATGAATATATTTTATTCCATGTAATACATA------ATACAATGTTATAC--AAAACTATTCAGGTATCAATACAAACACTAT-AATTT
gi|61586 : TTTTTTCTGTAATGCATTTCTTTTATTCCAAGGAAGACATA------ATACACTGTTATACA-AAAACTGTTTCTGTATCAATACAAGCTATATA
gi|61587 : TCTTTTTTCTGATGAATAGCTTTTGTTCCGTGTAAAACATA------ATACAATGTTATACA-AAAACTGTTCAGGTGTTAATGCAActtt
gi|61588 : TTTTTTTTTTGATGAATATCTTTTATTCCATGTAAGACATA------ATACAATGTTATACACAAAACT
gi|61589 : TTTTTTGTGTGATGAATATACTTTATTGCATGTAAGATATA------ATACAATATTAAACA-TAAATTGTTCAGATATCAATACGAACAATATA
gi|61590 : TTTTTATTGTGATGAATATATTTTATTCCATGTCAGATATA------ATATA
gi|61591 : TTGTTTTGTGATAAA-ACCGTTCATTCCATGTAAGACATA------ATACAGTGCTATAGA-AAAACTGTTCAGGTGTCAATACATGCTGT
gi|61592 : TTCTTTTGTGATGAATATCTTTTATTCCATGTAAGACTTA------ATACAATTGTATACttcattt
gi|61593 : TTGTTTTGTAATGAATATATTTTATTCCATCAAAGACAAA------ATGCAATCTTATGCA-AAAA-TATTCAGGTATCAATACAAACACTAT-AATTTcgaatccatgatc
gi|61594 : TTTGTTTTTGATGAATTTCTTTTATCCCATGTAAGACATA------ACACACCATTATACA-AA
gi|61595 : TTTTGTGTGATGAATACATTTTATTACATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTAACAATACAAGCTATAT-AATTT
gi|61596 : TTTTTTGTGATAAATATCTTTTATTTCAAGTAAGACATA------ATACAGTATTATACA-AAAGTTGTTCAGGTATCAATATAAACTGTAT-GATTT
gi|61597 : TTTATTGTGATGAATATCTTTTATTTCATGAAAGGCATA------ATACAATGTTTTACA-AAAACTGTTCATGTATCAA
gi|61598 : TTTTTTCTGATGAATAGCTTTTGTTCCGTGTAAAACATA------ATACAATGTTATACA-AAAACTGTTCAGGTGTAAATGCAAAC
gi|61599 : TTTTTGTGATGAATAGCTTTTATTCCTTGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTATCAACACAAGCTATAT-AATTT
gi|61600 : TTTTTGTGATGAATATCTTTCAATCCATTTAAGACATA------ATACAATGTTATATA-CATACTGTTCAAATATAAATACGAACAATATA
gi|61601 : TTTTGTGAAGAAT-TTATTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCATGTATCAATACAAGCTATAT-AATTT
gi|61602 : TTGTTACTGATACATTTTGCTCCATGTAAGACATA------ATACACTGTTATACA-AAGGTTGTTCAGGTATCAATATAA
gi|61603 : GTG-TGAATATCTTTAATTCCATGTAAGACATA------ACACAATGTTATACA-AAAACTGTACATGTATCAATACAAGCTATATtggatatgattt
gi|61604 : GATGAATATCTTTTATTCCATGCAAGACATA------ATACAATGTTATTCA-AAAATGGTTCAGGTATCAATACAAACTACAT-GATTTtattt
gi|61605 : GAAAAACTTTTATTCCATGTGAGGCATACGAGTAATATACTGTTATACA-CAAAATGTTCGGGTATCAATAAAAGCTATAT-AATTT
gi|61606 : AATATGTTTTATTCCATGTAAGACATA------ATACAATGTTATACA-AAAACTGTTCGTGTATCAATACAAGCTATAT
gi|61607 : TTTTATTCCATGTAAGACATA------ATACAATGTTATACC-AAAACTGTTCATGTATCAATACAtattt