lowQualScore                  :                1   1                                                            111      
lowQualScore                  :                6   6     1                1   22          0  1              4   777 0    
lowQualScore                  :                .   .     .                .   ..          .  .              .   ... .    
lowQualScore                  :                1   8     6                5   22          1  7              6   444 8    
consensus                     :     TTGGATGACATTTTGTCATCA-TTGAGCATTTTGAAAT-AAA--CAAGATGGCGTCC-AAAATGGCCGCCAATTTG-N-TCGAAA
Reference ( gi|124778 )       :     TTGGATGACATATTGACATCA-TTGAGCATTTTGAAAT-AAA--CAAGATGGCGTCC-AAAATGGCCGCCAATTTG-A-TCGAAA
gi|124769                     :     TTGGATGACGTTTTGTCATCA-CTGATCATTTTGAAAT-AAA--CAAGATGGTGTCC-AAAATGGCCGTCAATTTG-C-TCGAAA
gi|124773                     : tatgTTGAATGATATTTTGTCATCA-TTAAGTTTTTTGAAAT-AAA--CAAGATGGCGTTC-GAAATGGTCGCCAATTTG-C-TCGAAA
gi|124770                     : tatgTTGGATGATATTTTGTCATCA-TTGAGTATTTTAAAAA-GAA--CAAGATGGCGTTC-AAAATTGTCGCCAATTTG-C-TCGAAAa
gi|124771                     : tatgTTGGATGACATTTTGTCATCA-TTGAGCATTTTGAAAT-GAA--CAAGATGGCATCC-AAAATGGCa
gi|124772                     : tatgTTGGATGACAATTTGCCATCA-TTGAGCATTTTGAGATAAAA--AAAGGTGGCGTCC-AAAATGGCCCCAAATTTA-T-TCGAAA
gi|124768                     : tacgTTGGATTACATTTTGTCATCA-TTAAGTATTCTAAAAT-AAA--GACTATGGCGTAC-AAAATGGTCGCCAATTTG-T-TAGAAAt
gi|124765                     : tatgTTTGATGACATCTTGTCATTA-TTGAGCATTTTGAAAT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAA--TG-ACTTGAAAt
gi|124775                     : taagTTAGATGATATTTTGTCATTG-TTGGGCATTTCGAAAC-AAA--CAAGATGGTACTT-TAAATGGCCTCCAATTat
gi|124782                     :     aacGATAACGTTTCGTCATTA-TTGAGCATTTTGAAAT-AAA--TAAGATGGCGTCC-AAAATGGTCGCCAATTTG-C-TAGAAA
gi|124781                     :        GATGACAATTTGTCATCA-TTGAGCATTTTGAAAT-AAA--CAAAATGGTGTCT-AAAATCGCCGCCAATTt
gi|124774                     :        GATGACATCTTGTCATCA-TTGAGCATTTTGAAAT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAA--TGAA-TTGAAA
gi|124780                     :  aagcttGATGACATTTTGTCATCA-TTGAGCATTTCGAAAT-AAA--C-AGATGGTGCCC-AAAATat
gi|124767                     :        GATGACAGGATGTCATCA-TTGAGCATTTTGAAAT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAA--TGAA-TTGAAAcactgggatttaatt
gi|124776                     : taagcttGATGACATCTTGTCATCA-TTGAGAATTTTGAAAT-ATT--GAAAATGGCCGCC-AATATGG-CGGCAATTGA-A-TTGAAAat
gi|124783                     :  aagcttGATGACATTTTGTCATAA-TTGGGCATTTCG-AAC-CAA--CAAGATGGTGCCC-AAAATGGCat
gi|124777                     :        GATGACATCTTATCATCA-TTGAGTATTTTGAAAT-ATT--CAAGATGACCGCC-AACATTGCGGCAAA--TGAA-TTGAAA
gi|124784                     :   agcttGATGACATTTTGTCATCA-TTGATCAGTTTGAAAT-AAA--CAAGATGACat
gi|124779                     :        GATGATATTTTGTCATTACTTGA-CATTTTCAAAA-AAA--CAAGATGGCGCCC-CAAA
gi|124785                     :        GATAACATTTTGTCATCA-TTGAGCATTTCGAAAT-A
gi|124786                     :         ATGATACTTTGTCATCA-TTGAGCATTTCGAAAT-AAA--CAAGATGGCGTCCAAAAATGGCCGCCAATT
gi|124766                     :         ATGACATCTTGTCATCA-TTGAGCATTTTGAAGT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAA--TGAA-TTGAAA
gi|124787                     :  taagcttaTGATATTTTGTCGTTA-TTGGGCATTTCGAAAC-AAA--CAAGATGGTGCAC-AAAATGGCCCCAAATTat
gi|124788                     :            ACATTCTGTCATCA-TTTTGTATTTTAAAAT-AAA--TAGGATGGCGTTC-AAAATGGTCGCCAATTTG-C-TCGAAA
gi|124789                     :                 TTGCCATCA-TTAAGTATTTTGAAAT-AAA--CAA-ATGACGTTC-TAAATGGCCACCAATTCG-C-TCAAAAa
gi|124790                     :                  TGTCATCA-TCGAGCGTTTTGAAAT-AAA--CAAGATGGCGTCC-AAATTGGCCGCCAATTt
gi|124791                     :                             GGGCGTTTTGTCAC-AAATCCAAGATGGCCTCC-AAAATGGCCGCTAAAT---A-TTGAAA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|124792 ): AGATGGCCGCCAATATGGCGGCAAATTAATTGAAAA






Alignments
lowQualScore                  :                             1                1   22             1                  1      
lowQualScore                  :                             .                .   ..             .                  .      
lowQualScore                  :                             5                5   11             6                  0      
consensus                     :        TTGGATGACATTTTGTCATCA-TTGAGCATTTTGAAAT-AAA--CAAGATGGCGTCC-AAAATGGCCGCCAATTTGCTCGAAA
Reference ( family-680 )      :        TTGGATGACATTTTGTCATCA-TTGAGCATTTTGAAAT-AAA--CAAGATGGCGTCC-AAAATGGCCGCCAATTTGNTCGAAA
gi|124765                     :        TTTGATGACATCTTGTCATTA-TTGAGCATTTTGAAAT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAAT
gi|124766                     :        taagATGACATCTTGTCATCA-TTGAGCATTTTGAAGT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAATgacttgaaaat
gi|124767                     :   taagcttaGATGACAGGATGTCATCA-TTGAGCATTTTGAAAT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAATgaattgaaaat
gi|124768                     : taagcttTTGGATTACATTTTGTCATCA-TTAAGTATTCTAAAAT-AAA--GACTATGGCGTAC-AAAATGGTCGCCAATTTGTTAGAAAgaattgaaaat
gi|124769                     :    tatgTTGGATGACGTTTTGTCATCA-CTGATCATTTTGAAAT-AAA--CAAGATGGTGTCC-AAAATGGCCGTCAATTTGCTCGAAAt
gi|124770                     :    tatgTTGGATGATATTTTGTCATCA-TTGAGTATTTTAAAAA-GAA--CAAGATGGCGTTC-AAAATTGTCGCCAATTTGCTCGAAA
gi|124771                     :    tatgTTGGATGACATTTTGTCATCA-TTGAGCATTTTGAAAT-GAA--CAAGATGGCATCC-AAAATGGCa
gi|124772                     :    tatgTTGGATGACAATTTGCCATCA-TTGAGCATTTTGAGATAAAA--AAAGGTGGCGTCC-AAAATGGCCCCAAATTTATTCGAAA
gi|124773                     :    tacgTTGAATGATATTTTGTCATCA-TTAAGTTTTTTGAAAT-AAA--CAAGATGGCGTTC-GAAATGGTCGCCAATTTGCTCGAAAt
gi|124774                     :       tatgGATGACATCTTGTCATCA-TTGAGCATTTTGAAAT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAATa
gi|124775                     :  aagcttTTAGATGATATTTTGTCATTG-TTGGGCATTTCGAAAC-AAA--CAAGATGGTACTT-TAAATGGCCTCCAATTgaattgaaaat
gi|124776                     :        aacGATGACATCTTGTCATCA-TTGAGAATTTTGAAAT-ATT--GAAAATGGCCGCC-AATATGG-CGGCAATTGAATTGAAA
gi|124777                     :     aagcttGATGACATCTTATCATCA-TTGAGTATTTTGAAAT-ATT--CAAGATGACCGCC-AACATTGCGGCAAATat
gi|124778                     :   agcttTTGGATGACATATTGACATCA-TTGAGCATTTTGAAAT-AAA--CAAGATGGCGTCC-AAAATGGCCGCCAATTTGATCGAAAgaattgaaaat
gi|124779                     :           GATGATATTTTGTCATTACTTGA-CATTTTCAAAA-AAA--CAAGATGGCGCCC-CAAA
gi|124780                     :           GATGACATTTTGTCATCA-TTGAGCATTTCGAAAT-AAA--C-AGATGGTGCCC-AAAAT
gi|124781                     :           GATGACAATTTGTCATCA-TTGAGCATTTTGAAAT-AAA--CAAAATGGTGTCT-AAAATCGCCGCCAATTcactgggatttaatt
gi|124782                     :           GATAACGTTTCGTCATTA-TTGAGCATTTTGAAAT-AAA--TAAGATGGCGTCC-AAAATGGTCGCCAATTTGCTAGAAA
gi|124783                     :           GATGACATTTTGTCATAA-TTGGGCATTTCG-AAC-CAA--CAAGATGGTGCCC-AAAATGGCt
gi|124784                     :           GATGACATTTTGTCATCA-TTGATCAGTTTGAAAT-AAA--CAAGATGAC
gi|124785                     :           GATAACATTTTGTCATCA-TTGAGCATTTCGAAAT-A
gi|124786                     :            ATGATACTTTGTCATCA-TTGAGCATTTCGAAAT-AAA--CAAGATGGCGTCCAAAAATGGCCGCCAATT
gi|124787                     :             TGATATTTTGTCGTTA-TTGGGCATTTCGAAAC-AAA--CAAGATGGTGCAC-AAAATGGCCCCAAATT
gi|124788                     :               ACATTCTGTCATCA-TTTTGTATTTTAAAAT-AAA--TAGGATGGCGTTC-AAAATGGTCGCCAATTTGCTCGAAA
gi|124789                     :                    TTGCCATCA-TTAAGTATTTTGAAAT-AAA--CAA-ATGACGTTC-TAAATGGCCACCAATTCGCTCAAAAa
gi|124790                     :                     TGTCATCA-TCGAGCGTTTTGAAAT-AAA--CAAGATGGCGTCC-AAATTGGCCGCCAATTt
gi|124791                     :                                GGGCGTTTTGTCAC-AAATCCAAGATGGCCTCC-AAAATGGCCGCTAAAT--ATTGAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|124792 ): AGATGGCCGCCAATATGGCGGCAAATTAATTGAAAA






Alignments
lowQualScore                  :                             1                1   22             1                  3       
lowQualScore                  :                             .                .   ..             .                  .       
lowQualScore                  :                             5                5   11             6                  6       
consensus                     :        TTGGATGACATTTTGTCATCA-TTGAGCATTTTGAAAT-AAA--CAAGATGGCGTCC-AAAATGGCCGCCAATTTG-CTCGAAA
Reference ( family-680 )      :        TTGGATGACATTTTGTCATCA-TTGAGCATTTTGAAAT-AAA--CAAGATGGCGTCC-AAAATGGCCGCCAATTTG-CTCGAAA
gi|124765                     :        TTTGATGACATCTTGTCATTA-TTGAGCATTTTGAAAT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAA--TGACTTGAAA
gi|124766                     :        taagATGACATCTTGTCATCA-TTGAGCATTTTGAAGT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAATat
gi|124767                     :   taagcttaGATGACAGGATGTCATCA-TTGAGCATTTTGAAAT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAATgaattgaaaat
gi|124768                     : taagcttTTGGATTACATTTTGTCATCA-TTAAGTATTCTAAAAT-AAA--GACTATGGCGTAC-AAAATGGTCGCCAATTTG-TTAGAAAgaattgaaaat
gi|124769                     :    tatgTTGGATGACGTTTTGTCATCA-CTGATCATTTTGAAAT-AAA--CAAGATGGTGTCC-AAAATGGCCGTCAATTTG-CTCGAAAt
gi|124770                     :    tatgTTGGATGATATTTTGTCATCA-TTGAGTATTTTAAAAA-GAA--CAAGATGGCGTTC-AAAATTGTCGCCAATTTG-CTCGAAA
gi|124771                     :    tatgTTGGATGACATTTTGTCATCA-TTGAGCATTTTGAAAT-GAA--CAAGATGGCATCC-AAAATGGCa
gi|124772                     :    tatgTTGGATGACAATTTGCCATCA-TTGAGCATTTTGAGATAAAA--AAAGGTGGCGTCC-AAAATGGCCCCAAATTTA-TTCGAAA
gi|124773                     :    tacgTTGAATGATATTTTGTCATCA-TTAAGTTTTTTGAAAT-AAA--CAAGATGGCGTTC-GAAATGGTCGCCAATTTG-CTCGAAAt
gi|124774                     :       tatgGATGACATCTTGTCATCA-TTGAGCATTTTGAAAT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAATa
gi|124775                     :  aagcttTTAGATGATATTTTGTCATTG-TTGGGCATTTCGAAAC-AAA--CAAGATGGTACTT-TAAATGGCCTCCAATTgaattgaaaat
gi|124776                     :        aacGATGACATCTTGTCATCA-TTGAGAATTTTGAAAT-ATT--GAAAATGGCCGCC-AATATGG-CGGCAATTGA-ATTGAAA
gi|124777                     :     aagcttGATGACATCTTATCATCA-TTGAGTATTTTGAAAT-ATT--CAAGATGACCGCC-AACATTGCGGCAAATat
gi|124778                     :   agcttTTGGATGACATATTGACATCA-TTGAGCATTTTGAAAT-AAA--CAAGATGGCGTCC-AAAATGGCCGCCAATTTG-ATCGAAAgaattgaaaat
gi|124779                     :           GATGATATTTTGTCATTACTTGA-CATTTTCAAAA-AAA--CAAGATGGCGCCC-CAAA
gi|124780                     :           GATGACATTTTGTCATCA-TTGAGCATTTCGAAAT-AAA--C-AGATGGTGCCC-AAAAT
gi|124781                     :           GATGACAATTTGTCATCA-TTGAGCATTTTGAAAT-AAA--CAAAATGGTGTCT-AAAATCGCCGCCAATTcactgggatttaatt
gi|124782                     :           GATAACGTTTCGTCATTA-TTGAGCATTTTGAAAT-AAA--TAAGATGGCGTCC-AAAATGGTCGCCAATTTG-CTAGAAA
gi|124783                     :           GATGACATTTTGTCATAA-TTGGGCATTTCG-AAC-CAA--CAAGATGGTGCCC-AAAATGGCt
gi|124784                     :           GATGACATTTTGTCATCA-TTGATCAGTTTGAAAT-AAA--CAAGATGAC
gi|124785                     :           GATAACATTTTGTCATCA-TTGAGCATTTCGAAAT-A
gi|124786                     :            ATGATACTTTGTCATCA-TTGAGCATTTCGAAAT-AAA--CAAGATGGCGTCCAAAAATGGCCGCCAATT
gi|124787                     :             TGATATTTTGTCGTTA-TTGGGCATTTCGAAAC-AAA--CAAGATGGTGCAC-AAAATGGCCCCAAATT
gi|124788                     :               ACATTCTGTCATCA-TTTTGTATTTTAAAAT-AAA--TAGGATGGCGTTC-AAAATGGTCGCCAATTTG-CTCGAAA
gi|124789                     :                    TTGCCATCA-TTAAGTATTTTGAAAT-AAA--CAA-ATGACGTTC-TAAATGGCCACCAATTCG-CTCAAAAa
gi|124790                     :                     TGTCATCA-TCGAGCGTTTTGAAAT-AAA--CAAGATGGCGTCC-AAATTGGCCGCCAATTt
gi|124791                     :                                GGGCGTTTTGTCAC-AAATCCAAGATGGCCTCC-AAAATGGCCGCTAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|124792 ): AGATGGCCGCCAATATGGCGGCAAATTAATTGAAAA






Alignments
lowQualScore                  :                             1                1   22             1                  3       
lowQualScore                  :                             .                .   ..             .                  .       
lowQualScore                  :                             5                5   11             6                  6       
consensus                     :        TTGGATGACATTTTGTCATCA-TTGAGCATTTTGAAAT-AAA--CAAGATGGCGTCC-AAAATGGCCGCCAATTTG-CTCGAAA
Reference ( family-680 )      :        TTGGATGACATTTTGTCATCA-TTGAGCATTTTGAAAT-AAA--CAAGATGGCGTCC-AAAATGGCCGCCAATTTG-CTCGAAA
gi|124765                     :        TTTGATGACATCTTGTCATTA-TTGAGCATTTTGAAAT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAA--TGACTTGAAA
gi|124766                     :        taagATGACATCTTGTCATCA-TTGAGCATTTTGAAGT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAATat
gi|124767                     :   taagcttaGATGACAGGATGTCATCA-TTGAGCATTTTGAAAT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAATgaattgaaaat
gi|124768                     : taagcttTTGGATTACATTTTGTCATCA-TTAAGTATTCTAAAAT-AAA--GACTATGGCGTAC-AAAATGGTCGCCAATTTG-TTAGAAAgaattgaaaat
gi|124769                     :    tatgTTGGATGACGTTTTGTCATCA-CTGATCATTTTGAAAT-AAA--CAAGATGGTGTCC-AAAATGGCCGTCAATTTG-CTCGAAAt
gi|124770                     :    tatgTTGGATGATATTTTGTCATCA-TTGAGTATTTTAAAAA-GAA--CAAGATGGCGTTC-AAAATTGTCGCCAATTTG-CTCGAAA
gi|124771                     :    tatgTTGGATGACATTTTGTCATCA-TTGAGCATTTTGAAAT-GAA--CAAGATGGCATCC-AAAATGGCa
gi|124772                     :    tatgTTGGATGACAATTTGCCATCA-TTGAGCATTTTGAGATAAAA--AAAGGTGGCGTCC-AAAATGGCCCCAAATTTA-TTCGAAA
gi|124773                     :    tacgTTGAATGATATTTTGTCATCA-TTAAGTTTTTTGAAAT-AAA--CAAGATGGCGTTC-GAAATGGTCGCCAATTTG-CTCGAAAt
gi|124774                     :       tatgGATGACATCTTGTCATCA-TTGAGCATTTTGAAAT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAATa
gi|124775                     :  aagcttTTAGATGATATTTTGTCATTG-TTGGGCATTTCGAAAC-AAA--CAAGATGGTACTT-TAAATGGCCTCCAATTgaattgaaaat
gi|124776                     :        aacGATGACATCTTGTCATCA-TTGAGAATTTTGAAAT-ATT--GAAAATGGCCGCC-AATATGG-CGGCAATTGA-ATTGAAA
gi|124777                     :     aagcttGATGACATCTTATCATCA-TTGAGTATTTTGAAAT-ATT--CAAGATGACCGCC-AACATTGCGGCAAATat
gi|124778                     :   agcttTTGGATGACATATTGACATCA-TTGAGCATTTTGAAAT-AAA--CAAGATGGCGTCC-AAAATGGCCGCCAATTTG-ATCGAAAgaattgaaaat
gi|124779                     :           GATGATATTTTGTCATTACTTGA-CATTTTCAAAA-AAA--CAAGATGGCGCCC-CAAA
gi|124780                     :           GATGACATTTTGTCATCA-TTGAGCATTTCGAAAT-AAA--C-AGATGGTGCCC-AAAAT
gi|124781                     :           GATGACAATTTGTCATCA-TTGAGCATTTTGAAAT-AAA--CAAAATGGTGTCT-AAAATCGCCGCCAATTcactgggatttaatt
gi|124782                     :           GATAACGTTTCGTCATTA-TTGAGCATTTTGAAAT-AAA--TAAGATGGCGTCC-AAAATGGTCGCCAATTTG-CTAGAAA
gi|124783                     :           GATGACATTTTGTCATAA-TTGGGCATTTCG-AAC-CAA--CAAGATGGTGCCC-AAAATGGCt
gi|124784                     :           GATGACATTTTGTCATCA-TTGATCAGTTTGAAAT-AAA--CAAGATGAC
gi|124785                     :           GATAACATTTTGTCATCA-TTGAGCATTTCGAAAT-A
gi|124786                     :            ATGATACTTTGTCATCA-TTGAGCATTTCGAAAT-AAA--CAAGATGGCGTCCAAAAATGGCCGCCAATT
gi|124787                     :             TGATATTTTGTCGTTA-TTGGGCATTTCGAAAC-AAA--CAAGATGGTGCAC-AAAATGGCCCCAAATT
gi|124788                     :               ACATTCTGTCATCA-TTTTGTATTTTAAAAT-AAA--TAGGATGGCGTTC-AAAATGGTCGCCAATTTG-CTCGAAA
gi|124789                     :                    TTGCCATCA-TTAAGTATTTTGAAAT-AAA--CAA-ATGACGTTC-TAAATGGCCACCAATTCG-CTCAAAAa
gi|124790                     :                     TGTCATCA-TCGAGCGTTTTGAAAT-AAA--CAAGATGGCGTCC-AAATTGGCCGCCAATTt
gi|124791                     :                                GGGCGTTTTGTCAC-AAATCCAAGATGGCCTCC-AAAATGGCCGCTAA


blockSeqs                     :                             C                A   TC             A                  .
blockSeqs                     :                             .                .   .              .                  .
blockSeqs                     :                             .                .   .              .                  .
blockSeqs                     :                             .                .   .              .                  .
blockSeqs                     :                             .                .   .              .                  .
blockSeqs                     :                             .                .   .              .                  .
blockSeqs                     :                             .                .   .              .                  .
blockSeqs                     :                             .                .   .              .                  .
blockSeqs                     :                             .                .   .              .                  .
blockSeqs                     :                             .                .   .              .                  .
blockSeqs                     :                             .                .   .              .                   
blockSeqs                     :                             .                .   .              .                   
blockSeqs                     :                             .                .   .              .                   
blockSeqs                     :                             .                .   .              .                   
blockSeqs                     :                             .                .   .              .                   
blockSeqs                     :                             .                .   .              .                   
blockSeqs                     :                             .                .   .              .                   
blockSeqs                     :                             .                .   .              .                   
blockSeqs                     :                             .                .   .              .                   
blockSeqs                     :                             .                .   .              .                   
blockSeqs                     :                             .                .   .              .                   
blockSeqs                     :                             .                .   .              .                   
blockSeqs                     :                             .                .   .              .                   
blockSeqs                     :                             .                .   .              .                   
blockSeqs                     :                             .                .   .                                  
blockSeqs                     :                                              .                                      


blockSeqCons                  :        
originalCons                  :        TTGGATGACATTTTGTCATCA-TTGAGCATTTTGAAAT-AAA--CAAGATGGCGTCC-AAAATGGCCGCCAATTTG-CTCGAAA
finalCons                     :        TTGGATGACATTTTGTCATCA-TTGAGCATTTTGAAAT-AAA--CAAGATGGCGTCC-AAAATGGCCGCCAATTTG-CTCGAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|124792 ): AGATGGCCGCCAATATGGCGGCAAATTAATTGAAAA






Alignments
lowQualScore                  :                             1                1   22             1                  3       
lowQualScore                  :                             .                .   ..             .                  .       
lowQualScore                  :                             5                5   11             6                  6       
consensus                     :        TTGGATGACATTTTGTCATCA-TTGAGCATTTTGAAAT-AAA--CAAGATGGCGTCC-AAAATGGCCGCCAATTTG-CTCGAAA
Reference ( family-680 )      :        TTGGATGACATTTTGTCATCA-TTGAGCATTTTGAAAT-AAA--CAAGATGGCGTCC-AAAATGGCCGCCAATTTG-CTCGAAA
gi|124765                     :        TTTGATGACATCTTGTCATTA-TTGAGCATTTTGAAAT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAA--TGACTTGAAA
gi|124766                     :        taagATGACATCTTGTCATCA-TTGAGCATTTTGAAGT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAATat
gi|124767                     :   taagcttaGATGACAGGATGTCATCA-TTGAGCATTTTGAAAT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAATgaattgaaaat
gi|124768                     : taagcttTTGGATTACATTTTGTCATCA-TTAAGTATTCTAAAAT-AAA--GACTATGGCGTAC-AAAATGGTCGCCAATTTG-TTAGAAAgaattgaaaat
gi|124769                     :    tatgTTGGATGACGTTTTGTCATCA-CTGATCATTTTGAAAT-AAA--CAAGATGGTGTCC-AAAATGGCCGTCAATTTG-CTCGAAAt
gi|124770                     :    tatgTTGGATGATATTTTGTCATCA-TTGAGTATTTTAAAAA-GAA--CAAGATGGCGTTC-AAAATTGTCGCCAATTTG-CTCGAAA
gi|124771                     :    tatgTTGGATGACATTTTGTCATCA-TTGAGCATTTTGAAAT-GAA--CAAGATGGCATCC-AAAATGGCa
gi|124772                     :    tatgTTGGATGACAATTTGCCATCA-TTGAGCATTTTGAGATAAAA--AAAGGTGGCGTCC-AAAATGGCCCCAAATTTA-TTCGAAA
gi|124773                     :    tacgTTGAATGATATTTTGTCATCA-TTAAGTTTTTTGAAAT-AAA--CAAGATGGCGTTC-GAAATGGTCGCCAATTTG-CTCGAAAt
gi|124774                     :       tatgGATGACATCTTGTCATCA-TTGAGCATTTTGAAAT-ATT--CAAGATGGCCGCC-AATATGGCGGCAAATa
gi|124775                     :  aagcttTTAGATGATATTTTGTCATTG-TTGGGCATTTCGAAAC-AAA--CAAGATGGTACTT-TAAATGGCCTCCAATTgaattgaaaat
gi|124776                     :        aacGATGACATCTTGTCATCA-TTGAGAATTTTGAAAT-ATT--GAAAATGGCCGCC-AATATGG-CGGCAATTGA-ATTGAAA
gi|124777                     :     aagcttGATGACATCTTATCATCA-TTGAGTATTTTGAAAT-ATT--CAAGATGACCGCC-AACATTGCGGCAAATat
gi|124778                     :   agcttTTGGATGACATATTGACATCA-TTGAGCATTTTGAAAT-AAA--CAAGATGGCGTCC-AAAATGGCCGCCAATTTG-ATCGAAAgaattgaaaat
gi|124779                     :           GATGATATTTTGTCATTACTTGA-CATTTTCAAAA-AAA--CAAGATGGCGCCC-CAAA
gi|124780                     :           GATGACATTTTGTCATCA-TTGAGCATTTCGAAAT-AAA--C-AGATGGTGCCC-AAAAT
gi|124781                     :           GATGACAATTTGTCATCA-TTGAGCATTTTGAAAT-AAA--CAAAATGGTGTCT-AAAATCGCCGCCAATTcactgggatttaatt
gi|124782                     :           GATAACGTTTCGTCATTA-TTGAGCATTTTGAAAT-AAA--TAAGATGGCGTCC-AAAATGGTCGCCAATTTG-CTAGAAA
gi|124783                     :           GATGACATTTTGTCATAA-TTGGGCATTTCG-AAC-CAA--CAAGATGGTGCCC-AAAATGGCt
gi|124784                     :           GATGACATTTTGTCATCA-TTGATCAGTTTGAAAT-AAA--CAAGATGAC
gi|124785                     :           GATAACATTTTGTCATCA-TTGAGCATTTCGAAAT-A
gi|124786                     :            ATGATACTTTGTCATCA-TTGAGCATTTCGAAAT-AAA--CAAGATGGCGTCCAAAAATGGCCGCCAATT
gi|124787                     :             TGATATTTTGTCGTTA-TTGGGCATTTCGAAAC-AAA--CAAGATGGTGCAC-AAAATGGCCCCAAATT
gi|124788                     :               ACATTCTGTCATCA-TTTTGTATTTTAAAAT-AAA--TAGGATGGCGTTC-AAAATGGTCGCCAATTTG-CTCGAAA
gi|124789                     :                    TTGCCATCA-TTAAGTATTTTGAAAT-AAA--CAA-ATGACGTTC-TAAATGGCCACCAATTCG-CTCAAAAa
gi|124790                     :                     TGTCATCA-TCGAGCGTTTTGAAAT-AAA--CAAGATGGCGTCC-AAATTGGCCGCCAATTt
gi|124791                     :                                GGGCGTTTTGTCAC-AAATCCAAGATGGCCTCC-AAAATGGCCGCTAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|124792 ): AGATGGCCGCCAATATGGCGGCAAATTAATTGAAAA