lowQualScore : 11 111 11
lowQualScore : 0 5555 2 5 1 5 1 1 22 3 4 22 1 1 22 0 22 1 1 8 44444 333 11 1 1 666 00 55555 1
lowQualScore : . .... . . . . . . .. . . .. . . .. . .. . . . ..... ... .. . . ... .. ..... .
lowQualScore : 2 3333 1 5 8 9 8 1 66 1 4 66 9 9 88 1 11 5 5 7 33333 000 88 7 9 666 11 00000 2
consensus : TATATTTTAT----TTAAT-CACCGATTCTGTTT-GTTACAGACCCAA-ATTCAATTTCAGACTGCG--TCTTCA--A-AA-TA-TCATTTCCATATCCAGGCACACA--TCCGGCTTT-AAA-TGTACCCTATGGGATTTCC-----CATG---TATTTT-TAC-TGACT-AAAC-TTTTG----GTTTTCAGTATA
Reference ( gi|133750 ) : TATATTTTAT----TTAAT-CACTGATTCTGTTT-GTTACAAACCTAA-ATTCAATTTCAGACTGCG--TTTTCA--A-AA-TA-TCATTTCCATATCCAGGCACACA--TCCGGCTTT-AAA-TGTATCCTATGGGATTTCC-----CATG---TGTTTT-TAC-TGACA-AAAC-CTTTG----GTTTTCAGTATA
gi|133751 : TAGATTTTAT----TTAAT-CACCGATTCTGTTT-GTTATAAACCCAA-ATTCAATTTCAGACTGCA--TCTTCA--A-AA-TA-TTATTTCCATATCCAGGCACACA--TCCGACTTT-AAA-TGTA-CCTATCGGATTTAC-----CATG---TATTTT-TAC-TGACA-GAAC-CTTTG----GTTTTCAGTATA
gi|133752 : TATATTCTAT----TTAAA-CACAGGTTCTGTTT-GATACAAACCCAA-ATTCAATTTCAGACTGCG--TCTTTA--A-AA-TA-TAATT-CCATATCCAGGCACACA--TCCGGCTTA-AAA-TGTACCATATGGGATTTCC-----CATG---AAATTT-TAC-TGACA-ACAC-TTTCG----GTTTTCAGTATA
gi|133753 : TATATTATAT----TTAAT-CACCGAGTCTCTTT-GTTGCAAACCAAA-ATTCAATTTCTGATTGAG--TCTTCA--A-AA-TA-TCATTTCCATATCCAGGCACACA--CCCGGCTTT-AAA-TGTATTCTAGGGGATTTTC-----CATG---TATTTG-TAC-AGAGT-AAAC-TTTTG----GTTTTCAGTATA
gi|133754 : TATACTTTAT----TTAGT-CACCAATTATATTT-GTTACAAACCCAA-ATTCA------GACTGCG--TCTTCA--A-AA-TA-TCATTTTCATATCCAGTTACACA--TCTGGCTAT-ACA-TGTACCCTATGTGATTTCC-----CATG---TATTTT-TAA-TGAC--CAAT-TTTGG----GTTTTCAGTATA
gi|133755 : TATATAT-AT----TTAAT-TACCGATTGTGTTT-GTTACAAACCCAA-ATTCAGTTCAAGACTGCG--TTTTTA--A-AA-TA-TCATTTCCATATCCTAACACATA--TCCGG-TTT-AAT-TGTACCCTTTTGGATTTCC-----TATG---TATTTG-TAC-TGACT-AATC-TTTTG----GGTTTCTGTATA
gi|133756 : TATATTTTGT----TTAAT-CTCCTATTCTGTTT-GTTAGAAAGTCAA-GTACAATTTCAGACTAGG--TCTTCT--A-AA-TA-TCATTGCCTTATCCAGGCACATA--TTCAACTTT-AAA-CGTA-CCT-TG---------------TG---TATTTC-TGC-AGACT-TAAC-TTTTG----GTTTTCAGTATA
gi|133757 : TATACTTTAT----TTAAT-GACCGA-----------------------ACTTAATTTCACACTGC----CTTCA--A-A--TA-TCATTTCTATATCCAGGCACACA--TCTGGCTTA-AAA-TGTACCCTTTGGGATATCC-----CATG---TATTTT-TA
gi|133758 : ATATTTAAT----TTAAT-CACCATTTCTGTTT-GTTACAGACCAAA-ATTTAATTTCAGACTGCG--TCTTCA--A-AA-TA-TCATTTCCATATCGAGGCACACA--TCCGGCTTT-AAA-TGTACCCTATTGGATTTAC-----TATG---TATTTTATA---GACT-AAAT-TTTTG----GTTTTCAGTATAgttcaaacaatatttt
gi|133759 : TATTTCAT----TTAGT-CACCGATTCTGTTT-ATTACAAACCCAA-ATTCAAT
gi|133761 : TTTTATAACGTTAA---ACTTACTTTATTTTGTTTAAGACTTAA-ATTCATTTCCAGGTTGCT--TCTTTG--A-AG-TA-GTTTGTCCATATCCGGGCACATATGTCTGGCTTT-AAA-TGTACCCCACGGCATTTCC-----CATGATTTATTTT-
gi|133762 : TTTAT----TTAAT-CACCGATTCTGTTT-GTTGCAAATCCAA-ATTCAATTTCAGACTGTG--TCTTCA--A-A--TA-TCATTTCAATATCCAGGCACACA--TCCGGCTTT-AAA-GGTACCCTATTGGATTTCC-----CATG---TA-TTT-TAC-TGCCT-AAAC-CTTTG----GTTTTCAGCATA
gi|133763 : TTTAT----TTAAT-CACCGATTCTGTTT-GTTACAAACCTAA-ATTTATTTTAAGACTGTG--TCTTCA--A-AA-TA-TCATTTCCGTATTCAGGCACACA--TCCGGCTTT-AAA-CG----CTATGGGATTTCC-----AATG---TATTTT-TAC-TGATT-AAAT-GTTTG----GTTCTCAGTATA
gi|133764 : TTGAT----TTAAT-TACCGATTATGTTT-GTTACAGACCCAA-ATTCAATTTTAGGTAGTG--TCTTTA--G-AA-TA-GTATGTCCACACCGATGCACACG--TACGACTTA-AAA-TATACCCTATGGGGTTTCC-----CATG---TATTTT-TAC-TCACT-TAAC-ATTTT----GTTTTGAGTATA
gi|133765 : TTGAT----TTAAT-CCCCACTTCTATTT-GTTACAGAATCAA-ATTCAATGTCAGGTTTCA--TCTT-A--A-AA--------------ATCCTGACACACA--TCCGGCTTT-AAA-TATACCATAATGCAT---C-----CAGG---TA-TAT-TAC-TGACT-AAACACTCT-----GTATTGAGTATA
gi|133766 : TAT----TCAGT-CA---ATC---TTT-GTTACATATTTAA-AGTGAAGTTCAGGTTGTG--TCGTTG--A-AA-TA-GTATGTCCAC-TACAGACGCATA--TT-GGATTT-AAACTGAACTCTGGGGGATTTCC-----CATG---TA-TTT-TAC-TGACT-AAAC-GTTT
gi|133767 : AT----TTGATTCACCGATTCTGTAT-GATACAGACCAGACATTCAATTCCAG-----G--TCCTTA--A-AA-TA-GCATGTCCACATAC-GGCACACA--TCCGGCTTT-AAA-TATACCCTATGGAATTTCTCAAGGCATG---TATTTT-TAC-TG------AC-TTTTGTTTTGTTTTGAGTATA
gi|133768 : TAAT-CACTGATACTGTTT-GTTACAGACCCAA-TTTCAATTTCAGGTTGCGAATTTT----A-AA-TATTCA-TTCCATATCCGGGCACATG--TCCGGTTTT-AAA-TGTACCAGTTGGGATTTCC-----TATG---TGTTTT-CAC-TGACT-GAACATTTTT----GTTTTGAGTATA
gi|133769 : AAT-CACCGATTTTGTTT-GTTACAAGCTCAA-ACTGGATTTCAGACTGCC--CCTTTA--A-AA-TA-TTATTTCCATATCCAAGCTCACA--TCCGGTTTT-AAA-TGTACCCTATGGGAGTTCA-----CATG---TA-TTT-TAC-TGGCG-AAAC-TTTTG----GTTTTCAGAATA
gi|133770 : AAT-TACCATTTCTCTTT-GTAACAGACCCAT-ATTTAATTTCATGTTGTG--TTTT-----------------TCCACATCCAGGCACACG--TCCGGCTTTAAAA-TGCACTATATGGAATTTCA-----TATT---TAAATT-TATGTGATATAAAC-TTTTT----GTCTTAAGT
gi|133771 : CCGATTCATTTT-GTCTCAGGCCCGA-ATTCAGTTTCTT-TTGCG--TTTTTA--A-AA-TA-GTATGGCTACATCCAGGAACACA--TCCGGCTTT--AA-T----------GAATTTCC-----TATG---TA-TGT-TAC-TGGCT-AAAC-ATTTT----GTTTTGAGTATA
gi|133772 : ATTCTGTTT-GTTACTGACTCAA-ATTAAATTT------GTG--TCTTCATGATAA-TA-GTATGTCCACATCCAGTCACACA--CTCAGCTT--GAA-TGTACCTTACGGGATTTCC-----CATG---TATTTT-TAC-TGATT-TCAC-TTTTT----GTTTTGAGTATA
gi|133773 : T-GTTACAAACCCAA-ATTCAATTTAAGACTGCG--CCTTGA--A-AAATA-CCATTTACATATCCAGGCACACA--TCTGGCTTT-AAG-TGAACCTTATGGGATTCCC-----CATG---TATTCT-TAA-TGACT-AAAC-TTTTG----GTTTTCAGTATA
gi|133774 : TTCATATTTAGGCA-ACA--GCCGGCTTC-AGA-TGTACCCTATGGTATTTCC-----CTTG----GATTT-TAC-TGTTT-TAAC-ATTTT----GTTTTGAGTATA
gi|133775 : TCCATATTCCGGCACACA--CCCGGCTGT-AAA-TGTACCCTATGG
gi|133776 : TCCATATTCAGGCA-ACG--CCCAGTTGT-AAA-TGTACCCTATGG
gi|133777 : CATATTCCCGCACACA--TCCGGCTGT-AAA-TGTACCCTATGGTAT
gi|133760 : ACA--TTCGGCTTT-AAA-TGTACCCTAGGGGATTCCC-----CATG---TA-TTT-TAA-TAACT-TAAC-GTTTA----GTTTTGAGTA
Alignments
lowQualScore : 4444 1 1 0 1 22 2 22 1 1 22 0 22 1 1 44444 222 7 1 1 1 1 22 4444 0
lowQualScore : .... . . . . .. . .. . . .. . .. . . ..... ... . . . . . .. .... .
lowQualScore : 7777 9 7 1 7 00 4 44 7 7 88 4 00 5 5 22222 999 5 7 8 8 6 99 0000 7
consensus : TATATTTTAT----TTAAT-CACCGATTCTGTTT-GTTACAGACCCAA-ATTCAATTTCAGA-CTGCGTCTTCA--A-AA-TA-TCATTTCCATATCCAGGCACACA--TCCGGCTTT-AAA-TGTACCCTATGGGATTTCC-----CATG---TATTTT-TAC-TGAC-TAAAC-TTTTG----GTTTTCAGTATA
Reference ( family-679 ) : TATATTTTAT----TTAAT-CACCGATTCTGTTT-GTTACAGACCCAA-ATTCAATTTCAGA-CTGCGTCTTCA--A-AA-TA-TCATTTCCATATCCAGGCACACA--TCCGGCTTT-AAA-TGTACCCTATGGGATTTCC-----CATG---TATTTT-TAC-TGAC-TAAAC-TTTTG----GTTTTCAGTATA
gi|133750 : TATATTTTAT----TTAAT-CACTGATTCTGTTT-GTTACAAACCTAA-ATTCAATTTCAGA-CTGCGTTTTCA--A-AA-TA-TCATTTCCATATCCAGGCACACA--TCCGGCTTT-AAA-TGTATCCTATGGGATTTCC-----CATG---TGTTTT-TAC-TGAC-AAAAC-CTTTG----GTTTTCAGTATA
gi|133751 : TAGATTTTAT----TTAAT-CACCGATTCTGTTT-GTTATAAACCCAA-ATTCAATTTCAGA-CTGCATCTTCA--A-AA-TA-TTATTTCCATATCCAGGCACACA--TCCGACTTT-AAA-TGTA-CCTATCGGATTTAC-----CATG---TATTTT-TAC-TGAC-AGAAC-CTTTG----GTTTTCAGTATA
gi|133752 : TATATTCTAT----TTAAA-CACAGGTTCTGTTT-GATACAAACCCAA-ATTCAATTTCAGA-CTGCGTCTTTA--A-AA-TA-TAATT-CCATATCCAGGCACACA--TCCGGCTTA-AAA-TGTACCATATGGGATTTCC-----CATG---AAATTT-TAC-TGAC-AACAC-TTTCG----GTTTTCAGTATA
gi|133753 : TATATTATAT----TTAAT-CACCGAGTCTCTTT-GTTGCAAACCAAA-ATTCAATTTCTGA-TTGAGTCTTCA--A-AA-TA-TCATTTCCATATCCAGGCACACA--CCCGGCTTT-AAA-TGTATTCTAGGGGATTTTC-----CATG---TATTTG-TAC-AGAG-TAAAC-TTTTG----GTTTTCAGTATA
gi|133754 : TATACTTTAT----TTAGT-CACCAATTATATTT-GTTACAAACCCAA-ATTCA------GA-CTGCGTCTTCA--A-AA-TA-TCATTTTCATATCCAGTTACACA--TCTGGCTAT-ACA-TGTACCCTATGTGATTTCC-----CATG---TATTTT-TAA-TGAC-C-AAT-TTTGG----GTTTTCAGTATA
gi|133755 : TATATAT-AT----TTAAT-TACCGATTGTGTTT-GTTACAAACCCAA-ATTCAGTTCAAGA-CTGCGTTTTTA--A-AA-TA-TCATTTCCATATCCTAACACATA--TCCGG-TTT-AAT-TGTACCCTTTTGGATTTCC-----TATG---TATTTG-TAC-TGAC-TAATC-TTTTG----GGTTTCTGTATA
gi|133756 : TATATTTTGT----TTAAT-CTCCTATTCTGTTT-GTTAGAAAGTCAA-GTACAATTTCAGA-CTAGGTCTTCT--A-AA-TA-TCATTGCCTTATCCAGGCACATA--TTCAACTTT-AAA-CGTACCTT-----------------GTG---TATTTC-TGC-AGAC-TTAAC-TTTTG----GTTTTCAGTATA
gi|133757 : TATACTTTAT----TTAAT-GACCGA-----------------------ACTTAATTTCACA-CTGC--CTTCA--A-A--TA-TCATTTCTATATCCAGGCACACA--TCTGGCTTA-AAA-TGTACCCTTTGGGATATCC-----CATG---TATTTT-TA
gi|133758 : ATATTTAAT----TTAAT-CACCATTTCTGTTT-GTTACAGACCAAA-ATTTAATTTCAGA-CTGCGTCTTCA--A-AA-TA-TCATTTCCATATCGAGGCACACA--TCCGGCTTT-AAA-TGTACCCTATTGGATTTAC-----TATG---TATTTTATA---GAC-TAAAT-TTTTG----GTTTTCAGTATAgttcaaacaatatttt
gi|133759 : TATTTCAT----TTAGT-CACCGATTCTGTTT-ATTACAAACCCAA-ATTCAAT
gi|133760 : ATTTTAT----TTTAT-CACC---------T-GTAACAGATCAAA-AT-CTATTTAAAAGTTGGGTCTTTA--A-A--------------------------CA--TTCGGCTTT-AAA-TGTACCCTAGGGGATTCCC-----CATG---TA-TTT-TAA-TAAC-TTAAC-GTTTA----GTTTTGAGTA
gi|133761 : TTTTATAACGTTAA---ACTTACTTTATTTTGTTTAAGACTTAA-ATTCATTTCCAGG-TTGCTTCTTTG--A-AG-TA-GTTTGTCCATATCCGGGCACATATGTCTGGCTTT-AAA-TGTACCCCACGGCATTTCC-----CATGATTTATTTT-
gi|133762 : TTTAT----TTAAT-CACCGATTCTGTTT-GTTGCAAATCCAA-ATTCAATTTCAGA-CTGTGTCTTCA--A-A--TA-TCATTTCAATATCCAGGCACACA--TCCGGCTTT-AAA-GGTACCCTATTGGATTTCC-----CATG---TA-TTT-TAC-TGCC-TAAAC-CTTTG----GTTTTCAGCATA
gi|133763 : TTTAT----TTAAT-CACCGATTCTGTTT-GTTACAAACCTAA-ATTTATTTTAAGA-CTGTGTCTTCA--A-AA-TA-TCATTTCCGTATTCAGGCACACA--TCCGGCTTT-AAA-CG----CTATGGGATTTCC-----AATG---TATTTT-TAC-TGAT-TAAAT-GTTTG----GTTCTCAGTATA
gi|133764 : TTGAT----TTAAT-TACCGATTATGTTT-GTTACAGACCCAA-ATTCAATTTTAGG-TAGTGTCTTTA--G-AA-TA-GTATGTCCACACCGATGCACACG--TACGACTTA-AAA-TATACCCTATGGGGTTTCC-----CATG---TATTTT-TAC-TCAC-TTAAC-ATTTT----GTTTTGAGTATA
gi|133765 : TTGAT----TTAAT-CCCCACTTCTATTT-GTTACAGAATCAA-ATTCAATGTCAGG-TTTCATCTT-A--A-AA--------------ATCCTGACACACA--TCCGGCTTT-AAA-TATACCATAATGCAT---C-----CAGG---TA-TAT-TAC-TGAC-TAAAC-ACTCT----GTATTGAGTATA
gi|133766 : TAT----TCAGT-CA---ATC---TTT-GTTACATATTTAA-AGTGAAGTTCAGG-TTGTGTCGTTG--A-AA-TA-GTATGTCCAC-TACAGACGCATA--TT-GGATTT-AAACTGAACTCTGGGGGATTTCC-----CATG---TA-TTT-TAC-TGAC-TAAAC-GTTT
gi|133767 : AT----TTGATTCACCGATTCTGTAT-GATACAGACCAGACATTCAATTCCAG------GTCCTTA--A-AA-TA-GCATGTCCACATAC-GGCACACA--TCCGGCTTT-AAA-TATACCCTATGGAATTTCTCAAGGCATG---TATTTT-TAC-TG------AC-TTTTGTTTTGTTTTGAGTATA
gi|133768 : TAAT-CACTGATACTGTTT-GTTACAGACCCAA-TTTCAATTTCAGG-TTGCGAATTTT--A-AA-TATTCA-TTCCATATCCGGGCACATG--TCCGGTTTT-AAA-TGTACCAGTTGGGATTTCC-----TATG---TGTTTT-CAC-TGAC-TGAACATTTTT----GTTTTGAGTATA
gi|133769 : AAT-CACCGATTTTGTTT-GTTACAAGCTCAA-ACTGGATTTCAGA-CTGCCCCTTTA--A-AA-TA-TTATTTCCATATCCAAGCTCACA--TCCGGTTTT-AAA-TGTACCCTATGGGAGTTCA-----CATG---TA-TTT-TAC-TGGC-GAAAC-TTTTG----GTTTTCAGAATA
gi|133770 : AAT-TACCATTTCTCTTT-GTAACAGACCCAT-ATTTAATTTCATG-TTGTGTTTT-----------------TCCACATCCAGGCACACG--TCCGGCTTTAAAA-TGCACTATATGGAATTTCA-----TATT---TAAATT-TATGTGATATAAAC-TTTTT----GTCTTAAGT
gi|133771 : CCGATTCATTTT-GTCTCAGGCCCGA-ATTCAGTTTCTT--TTGCGTTTTTA--A-AA-TA-GTATGGCTACATCCAGGAACACA--TCCGGCTTT--AA-T----------GAATTTCC-----TATG---TA-TGT-TAC-TGGC-TAAAC-ATTTT----GTTTTGAGTATA
gi|133772 : ATTCTGTTT-GTTACTGACTCAA-ATTAAATTT-------GTGTCTTCATGATAA-TA-GTATGTCCACATCCAGTCACACA--CTCAGCTT--GAA-TGTACCTTACGGGATTTCC-----CATG---TATTTT-TAC-TGAT-TTCAC-TTTTT----GTTTTGAGTATA
gi|133773 : T-GTTACAAACCCAA-ATTCAATTTAAGA-CTGCGCCTTGA--A-AAATA-CCATTTACATATCCAGGCACACA--TCTGGCTTT-AAG-TGAACCTTATGGGATTCCC-----CATG---TATTCT-TAA-TGAC-TAAAC-TTTTG----GTTTTCAGTATA
gi|133774 : TTCATATTTAGGCA-ACA--GCCGGCTTC-AGA-TGTACCCTATGGTATTTCC-----CTTG---GA-TTT-TAC-TGTT-TTAAC-ATTTT----GTTTTGAGTATA
gi|133775 : TCCATATTCCGGCACACA--CCCGGCTGT-AAA-TGTACCCTATGG
gi|133776 : TCCATATTCAGGCA-ACG--CCCAGTTGT-AAA-TGTACCCTATGG
gi|133777 : CATATTCCCGCACACA--TCCGGCTGT-AAA-TGTACCCTATGGTAT
Alignments
lowQualScore : 4444 1 1 0 1 22 2 22 1 1 22 0 22 1 1 44444 222 7 1 1 1 1 22 4444 0
lowQualScore : .... . . . . .. . .. . . .. . .. . . ..... ... . . . . . .. .... .
lowQualScore : 7777 9 7 1 7 00 4 44 7 7 88 4 00 5 5 22222 999 5 7 8 8 6 99 0000 7
consensus : TATATTTTAT----TTAAT-CACCGATTCTGTTT-GTTACAGACCCAA-ATTCAATTTCAGA-CTGCGTCTTCA--A-AA-TA-TCATTTCCATATCCAGGCACACA--TCCGGCTTT-AAA-TGTACCCTATGGGATTTCC-----CATG---TATTTT-TAC-TGAC-TAAAC-TTTTG----GTTTTCAGTATA
Reference ( family-679 ) : TATATTTTAT----TTAAT-CACCGATTCTGTTT-GTTACAGACCCAA-ATTCAATTTCAGA-CTGCGTCTTCA--A-AA-TA-TCATTTCCATATCCAGGCACACA--TCCGGCTTT-AAA-TGTACCCTATGGGATTTCC-----CATG---TATTTT-TAC-TGAC-TAAAC-TTTTG----GTTTTCAGTATA
gi|133750 : TATATTTTAT----TTAAT-CACTGATTCTGTTT-GTTACAAACCTAA-ATTCAATTTCAGA-CTGCGTTTTCA--A-AA-TA-TCATTTCCATATCCAGGCACACA--TCCGGCTTT-AAA-TGTATCCTATGGGATTTCC-----CATG---TGTTTT-TAC-TGAC-AAAAC-CTTTG----GTTTTCAGTATA
gi|133751 : TAGATTTTAT----TTAAT-CACCGATTCTGTTT-GTTATAAACCCAA-ATTCAATTTCAGA-CTGCATCTTCA--A-AA-TA-TTATTTCCATATCCAGGCACACA--TCCGACTTT-AAA-TGTA-CCTATCGGATTTAC-----CATG---TATTTT-TAC-TGAC-AGAAC-CTTTG----GTTTTCAGTATA
gi|133752 : TATATTCTAT----TTAAA-CACAGGTTCTGTTT-GATACAAACCCAA-ATTCAATTTCAGA-CTGCGTCTTTA--A-AA-TA-TAATT-CCATATCCAGGCACACA--TCCGGCTTA-AAA-TGTACCATATGGGATTTCC-----CATG---AAATTT-TAC-TGAC-AACAC-TTTCG----GTTTTCAGTATA
gi|133753 : TATATTATAT----TTAAT-CACCGAGTCTCTTT-GTTGCAAACCAAA-ATTCAATTTCTGA-TTGAGTCTTCA--A-AA-TA-TCATTTCCATATCCAGGCACACA--CCCGGCTTT-AAA-TGTATTCTAGGGGATTTTC-----CATG---TATTTG-TAC-AGAG-TAAAC-TTTTG----GTTTTCAGTATA
gi|133754 : TATACTTTAT----TTAGT-CACCAATTATATTT-GTTACAAACCCAA-ATTCA------GA-CTGCGTCTTCA--A-AA-TA-TCATTTTCATATCCAGTTACACA--TCTGGCTAT-ACA-TGTACCCTATGTGATTTCC-----CATG---TATTTT-TAA-TGAC-C-AAT-TTTGG----GTTTTCAGTATA
gi|133755 : TATATAT-AT----TTAAT-TACCGATTGTGTTT-GTTACAAACCCAA-ATTCAGTTCAAGA-CTGCGTTTTTA--A-AA-TA-TCATTTCCATATCCTAACACATA--TCCGG-TTT-AAT-TGTACCCTTTTGGATTTCC-----TATG---TATTTG-TAC-TGAC-TAATC-TTTTG----GGTTTCTGTATA
gi|133756 : TATATTTTGT----TTAAT-CTCCTATTCTGTTT-GTTAGAAAGTCAA-GTACAATTTCAGA-CTAGGTCTTCT--A-AA-TA-TCATTGCCTTATCCAGGCACATA--TTCAACTTT-AAA-CGTACCTT-----------------GTG---TATTTC-TGC-AGAC-TTAAC-TTTTG----GTTTTCAGTATA
gi|133757 : TATACTTTAT----TTAAT-GACCGA-----------------------ACTTAATTTCACA-CTGC--CTTCA--A-A--TA-TCATTTCTATATCCAGGCACACA--TCTGGCTTA-AAA-TGTACCCTTTGGGATATCC-----CATG---TATTTT-TA
gi|133758 : ATATTTAAT----TTAAT-CACCATTTCTGTTT-GTTACAGACCAAA-ATTTAATTTCAGA-CTGCGTCTTCA--A-AA-TA-TCATTTCCATATCGAGGCACACA--TCCGGCTTT-AAA-TGTACCCTATTGGATTTAC-----TATG---TATTTTATA---GAC-TAAAT-TTTTG----GTTTTCAGTATAgttcaaacaatatttt
gi|133759 : TATTTCAT----TTAGT-CACCGATTCTGTTT-ATTACAAACCCAA-ATTCAAT
gi|133760 : ATTTTAT----TTTAT-CACC---------T-GTAACAGATCAAA-AT-CTATTTAAAAGTTGGGTCTTTA--A-A--------------------------CA--TTCGGCTTT-AAA-TGTACCCTAGGGGATTCCC-----CATG---TA-TTT-TAA-TAAC-TTAAC-GTTTA----GTTTTGAGTA
gi|133761 : TTTTATAACGTTAA---ACTTACTTTATTTTGTTTAAGACTTAA-ATTCATTTCCAGG-TTGCTTCTTTG--A-AG-TA-GTTTGTCCATATCCGGGCACATATGTCTGGCTTT-AAA-TGTACCCCACGGCATTTCC-----CATGATTTATTTT-
gi|133762 : TTTAT----TTAAT-CACCGATTCTGTTT-GTTGCAAATCCAA-ATTCAATTTCAGA-CTGTGTCTTCA--A-A--TA-TCATTTCAATATCCAGGCACACA--TCCGGCTTT-AAA-GGTACCCTATTGGATTTCC-----CATG---TA-TTT-TAC-TGCC-TAAAC-CTTTG----GTTTTCAGCATA
gi|133763 : TTTAT----TTAAT-CACCGATTCTGTTT-GTTACAAACCTAA-ATTTATTTTAAGA-CTGTGTCTTCA--A-AA-TA-TCATTTCCGTATTCAGGCACACA--TCCGGCTTT-AAA-CG----CTATGGGATTTCC-----AATG---TATTTT-TAC-TGAT-TAAAT-GTTTG----GTTCTCAGTATA
gi|133764 : TTGAT----TTAAT-TACCGATTATGTTT-GTTACAGACCCAA-ATTCAATTTTAGG-TAGTGTCTTTA--G-AA-TA-GTATGTCCACACCGATGCACACG--TACGACTTA-AAA-TATACCCTATGGGGTTTCC-----CATG---TATTTT-TAC-TCAC-TTAAC-ATTTT----GTTTTGAGTATA
gi|133765 : TTGAT----TTAAT-CCCCACTTCTATTT-GTTACAGAATCAA-ATTCAATGTCAGG-TTTCATCTT-A--A-AA--------------ATCCTGACACACA--TCCGGCTTT-AAA-TATACCATAATGCAT---C-----CAGG---TA-TAT-TAC-TGAC-TAAAC-ACTCT----GTATTGAGTATA
gi|133766 : TAT----TCAGT-CA---ATC---TTT-GTTACATATTTAA-AGTGAAGTTCAGG-TTGTGTCGTTG--A-AA-TA-GTATGTCCAC-TACAGACGCATA--TT-GGATTT-AAACTGAACTCTGGGGGATTTCC-----CATG---TA-TTT-TAC-TGAC-TAAAC-GTTT
gi|133767 : AT----TTGATTCACCGATTCTGTAT-GATACAGACCAGACATTCAATTCCAG------GTCCTTA--A-AA-TA-GCATGTCCACATAC-GGCACACA--TCCGGCTTT-AAA-TATACCCTATGGAATTTCTCAAGGCATG---TATTTT-TAC-TG------AC-TTTTGTTTTGTTTTGAGTATA
gi|133768 : TAAT-CACTGATACTGTTT-GTTACAGACCCAA-TTTCAATTTCAGG-TTGCGAATTTT--A-AA-TATTCA-TTCCATATCCGGGCACATG--TCCGGTTTT-AAA-TGTACCAGTTGGGATTTCC-----TATG---TGTTTT-CAC-TGAC-TGAACATTTTT----GTTTTGAGTATA
gi|133769 : AAT-CACCGATTTTGTTT-GTTACAAGCTCAA-ACTGGATTTCAGA-CTGCCCCTTTA--A-AA-TA-TTATTTCCATATCCAAGCTCACA--TCCGGTTTT-AAA-TGTACCCTATGGGAGTTCA-----CATG---TA-TTT-TAC-TGGC-GAAAC-TTTTG----GTTTTCAGAATA
gi|133770 : AAT-TACCATTTCTCTTT-GTAACAGACCCAT-ATTTAATTTCATG-TTGTGTTTT-----------------TCCACATCCAGGCACACG--TCCGGCTTTAAAA-TGCACTATATGGAATTTCA-----TATT---TAAATT-TATGTGATATAAAC-TTTTT----GTCTTAAGT
gi|133771 : CCGATTCATTTT-GTCTCAGGCCCGA-ATTCAGTTTCTT--TTGCGTTTTTA--A-AA-TA-GTATGGCTACATCCAGGAACACA--TCCGGCTTT--AA-T----------GAATTTCC-----TATG---TA-TGT-TAC-TGGC-TAAAC-ATTTT----GTTTTGAGTATA
gi|133772 : ATTCTGTTT-GTTACTGACTCAA-ATTAAATTT-------GTGTCTTCATGATAA-TA-GTATGTCCACATCCAGTCACACA--CTCAGCTT--GAA-TGTACCTTACGGGATTTCC-----CATG---TATTTT-TAC-TGAT-TTCAC-TTTTT----GTTTTGAGTATA
gi|133773 : T-GTTACAAACCCAA-ATTCAATTTAAGA-CTGCGCCTTGA--A-AAATA-CCATTTACATATCCAGGCACACA--TCTGGCTTT-AAG-TGAACCTTATGGGATTCCC-----CATG---TATTCT-TAA-TGAC-TAAAC-TTTTG----GTTTTCAGTATA
gi|133774 : TTCATATTTAGGCA-ACA--GCCGGCTTC-AGA-TGTACCCTATGGTATTTCC-----CTTG---GA-TTT-TAC-TGTT-TTAAC-ATTTT----GTTTTGAGTATA
gi|133775 : TCCATATTCCGGCACACA--CCCGGCTGT-AAA-TGTACCCTATGG
gi|133776 : TCCATATTCAGGCA-ACG--CCCAGTTGT-AAA-TGTACCCTATGG
gi|133777 : CATATTCCCGCACACA--TCCGGCTGT-AAA-TGTACCCTATGGTAT
blockSeqs : AACG T T C AG C TG T A TT TG A C CAAGG ATT T A G A G AT TTTT
blockSeqs : . . . . A T . . . T . . . . . A . . . A C .
blockSeqs : . . . . A C . . . T . . . . . T . . . A T .
blockSeqs : . . . . A C . . . T . . . . . T . . . A T .
blockSeqs : . . . . A T . . . T . . . . . T . . . T T .
blockSeqs : . . . . A C . . . T . . . . . T . . . A T .
blockSeqs : . . . . A C . . . T . . . . . T . . . T T .
blockSeqs : . . . . A C . . . T . . . . . T . . . A T .
blockSeqs : . . . . A T . . . T . . . . . T . . . A G .
blockSeqs : . . . . G T . . . G . . . . . T . . . T C .
blockSeqs : . . . . A C . . . T . . . . . T . . . A G .
blockSeqs : . . . . A C . . . T . . . . . T . . . A A .
blockSeqs : . . . . G T . . . G . . . . . T . . . G A .
blockSeqs : . . . . G T . . . G . . . . . A . . . A G .
blockSeqs : . . . . G T . . . G . . . . . T . . . A T .
blockSeqs : . . . . G T . . . T . . . . . T . . . A T .
blockSeqs : . . . . A T . . . G . . . . . . . . . T T .
blockSeqs : . . . G T . . . G . . . . . . . . . A A .
blockSeqs : . . . A C . . . C . . . . . . . . . T T .
blockSeqs : . . . . G . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons :
originalCons : TATATTTTAT----TTAAT-CACCGATTCTGTTT-GTTACAGACCCAA-ATTCAATTTCAGA-CTGCGTCTTCA--A-AA-TA-TCATTTCCATATCCAGGCACACA--TCCGGCTTT-AAA-TGTACCCTATGGGATTTCC-----CATG---TATTTT-TAC-TGAC-TAAAC-TTTTG----GTTTTCAGTATA
finalCons : TATATTTTAT----TTAAT-CACCGATTCTGTTT-GTTACAGACCCAA-ATTCAATTTCAGA-CTGCGTCTTCA--A-AA-TA-TCATTTCCATATCCAGGCACACA--TCCGGCTTT-AAA-TGTACCCTATGGGATTTCC-----CATG---TATTTT-TAC-TGAC-TAAAC-TTTTG----GTTTTCAGTATA
Alignments
lowQualScore : 4444 1 1 0 1 22 2 22 1 1 22 0 22 1 1 44444 222 7 1 1 1 1 22 4444 0
lowQualScore : .... . . . . .. . .. . . .. . .. . . ..... ... . . . . . .. .... .
lowQualScore : 7777 9 7 1 7 00 4 44 7 7 88 4 00 5 5 22222 999 5 7 8 8 6 99 0000 7
consensus : TATATTTTAT----TTAAT-CACCGATTCTGTTT-GTTACAGACCCAA-ATTCAATTTCAGA-CTGCGTCTTCA--A-AA-TA-TCATTTCCATATCCAGGCACACA--TCCGGCTTT-AAA-TGTACCCTATGGGATTTCC-----CATG---TATTTT-TAC-TGAC-TAAAC-TTTTG----GTTTTCAGTATA
Reference ( family-679 ) : TATATTTTAT----TTAAT-CACCGATTCTGTTT-GTTACAGACCCAA-ATTCAATTTCAGA-CTGCGTCTTCA--A-AA-TA-TCATTTCCATATCCAGGCACACA--TCCGGCTTT-AAA-TGTACCCTATGGGATTTCC-----CATG---TATTTT-TAC-TGAC-TAAAC-TTTTG----GTTTTCAGTATA
gi|133750 : TATATTTTAT----TTAAT-CACTGATTCTGTTT-GTTACAAACCTAA-ATTCAATTTCAGA-CTGCGTTTTCA--A-AA-TA-TCATTTCCATATCCAGGCACACA--TCCGGCTTT-AAA-TGTATCCTATGGGATTTCC-----CATG---TGTTTT-TAC-TGAC-AAAAC-CTTTG----GTTTTCAGTATA
gi|133751 : TAGATTTTAT----TTAAT-CACCGATTCTGTTT-GTTATAAACCCAA-ATTCAATTTCAGA-CTGCATCTTCA--A-AA-TA-TTATTTCCATATCCAGGCACACA--TCCGACTTT-AAA-TGTA-CCTATCGGATTTAC-----CATG---TATTTT-TAC-TGAC-AGAAC-CTTTG----GTTTTCAGTATA
gi|133752 : TATATTCTAT----TTAAA-CACAGGTTCTGTTT-GATACAAACCCAA-ATTCAATTTCAGA-CTGCGTCTTTA--A-AA-TA-TAATT-CCATATCCAGGCACACA--TCCGGCTTA-AAA-TGTACCATATGGGATTTCC-----CATG---AAATTT-TAC-TGAC-AACAC-TTTCG----GTTTTCAGTATA
gi|133753 : TATATTATAT----TTAAT-CACCGAGTCTCTTT-GTTGCAAACCAAA-ATTCAATTTCTGA-TTGAGTCTTCA--A-AA-TA-TCATTTCCATATCCAGGCACACA--CCCGGCTTT-AAA-TGTATTCTAGGGGATTTTC-----CATG---TATTTG-TAC-AGAG-TAAAC-TTTTG----GTTTTCAGTATA
gi|133754 : TATACTTTAT----TTAGT-CACCAATTATATTT-GTTACAAACCCAA-ATTCA------GA-CTGCGTCTTCA--A-AA-TA-TCATTTTCATATCCAGTTACACA--TCTGGCTAT-ACA-TGTACCCTATGTGATTTCC-----CATG---TATTTT-TAA-TGAC-C-AAT-TTTGG----GTTTTCAGTATA
gi|133755 : TATATAT-AT----TTAAT-TACCGATTGTGTTT-GTTACAAACCCAA-ATTCAGTTCAAGA-CTGCGTTTTTA--A-AA-TA-TCATTTCCATATCCTAACACATA--TCCGG-TTT-AAT-TGTACCCTTTTGGATTTCC-----TATG---TATTTG-TAC-TGAC-TAATC-TTTTG----GGTTTCTGTATA
gi|133756 : TATATTTTGT----TTAAT-CTCCTATTCTGTTT-GTTAGAAAGTCAA-GTACAATTTCAGA-CTAGGTCTTCT--A-AA-TA-TCATTGCCTTATCCAGGCACATA--TTCAACTTT-AAA-CGTACCTT-----------------GTG---TATTTC-TGC-AGAC-TTAAC-TTTTG----GTTTTCAGTATA
gi|133757 : TATACTTTAT----TTAAT-GACCGA-----------------------ACTTAATTTCACA-CTGC--CTTCA--A-A--TA-TCATTTCTATATCCAGGCACACA--TCTGGCTTA-AAA-TGTACCCTTTGGGATATCC-----CATG---TATTTT-TA
gi|133758 : ATATTTAAT----TTAAT-CACCATTTCTGTTT-GTTACAGACCAAA-ATTTAATTTCAGA-CTGCGTCTTCA--A-AA-TA-TCATTTCCATATCGAGGCACACA--TCCGGCTTT-AAA-TGTACCCTATTGGATTTAC-----TATG---TATTTTATA---GAC-TAAAT-TTTTG----GTTTTCAGTATAgttcaaacaatatttt
gi|133759 : TATTTCAT----TTAGT-CACCGATTCTGTTT-ATTACAAACCCAA-ATTCAAT
gi|133760 : ATTTTAT----TTTAT-CACC---------T-GTAACAGATCAAA-AT-CTATTTAAAAGTTGGGTCTTTA--A-A--------------------------CA--TTCGGCTTT-AAA-TGTACCCTAGGGGATTCCC-----CATG---TA-TTT-TAA-TAAC-TTAAC-GTTTA----GTTTTGAGTA
gi|133761 : TTTTATAACGTTAA---ACTTACTTTATTTTGTTTAAGACTTAA-ATTCATTTCCAGG-TTGCTTCTTTG--A-AG-TA-GTTTGTCCATATCCGGGCACATATGTCTGGCTTT-AAA-TGTACCCCACGGCATTTCC-----CATGATTTATTTT-
gi|133762 : TTTAT----TTAAT-CACCGATTCTGTTT-GTTGCAAATCCAA-ATTCAATTTCAGA-CTGTGTCTTCA--A-A--TA-TCATTTCAATATCCAGGCACACA--TCCGGCTTT-AAA-GGTACCCTATTGGATTTCC-----CATG---TA-TTT-TAC-TGCC-TAAAC-CTTTG----GTTTTCAGCATA
gi|133763 : TTTAT----TTAAT-CACCGATTCTGTTT-GTTACAAACCTAA-ATTTATTTTAAGA-CTGTGTCTTCA--A-AA-TA-TCATTTCCGTATTCAGGCACACA--TCCGGCTTT-AAA-CG----CTATGGGATTTCC-----AATG---TATTTT-TAC-TGAT-TAAAT-GTTTG----GTTCTCAGTATA
gi|133764 : TTGAT----TTAAT-TACCGATTATGTTT-GTTACAGACCCAA-ATTCAATTTTAGG-TAGTGTCTTTA--G-AA-TA-GTATGTCCACACCGATGCACACG--TACGACTTA-AAA-TATACCCTATGGGGTTTCC-----CATG---TATTTT-TAC-TCAC-TTAAC-ATTTT----GTTTTGAGTATA
gi|133765 : TTGAT----TTAAT-CCCCACTTCTATTT-GTTACAGAATCAA-ATTCAATGTCAGG-TTTCATCTT-A--A-AA--------------ATCCTGACACACA--TCCGGCTTT-AAA-TATACCATAATGCAT---C-----CAGG---TA-TAT-TAC-TGAC-TAAAC-ACTCT----GTATTGAGTATA
gi|133766 : TAT----TCAGT-CA---ATC---TTT-GTTACATATTTAA-AGTGAAGTTCAGG-TTGTGTCGTTG--A-AA-TA-GTATGTCCAC-TACAGACGCATA--TT-GGATTT-AAACTGAACTCTGGGGGATTTCC-----CATG---TA-TTT-TAC-TGAC-TAAAC-GTTT
gi|133767 : AT----TTGATTCACCGATTCTGTAT-GATACAGACCAGACATTCAATTCCAG------GTCCTTA--A-AA-TA-GCATGTCCACATAC-GGCACACA--TCCGGCTTT-AAA-TATACCCTATGGAATTTCTCAAGGCATG---TATTTT-TAC-TG------AC-TTTTGTTTTGTTTTGAGTATA
gi|133768 : TAAT-CACTGATACTGTTT-GTTACAGACCCAA-TTTCAATTTCAGG-TTGCGAATTTT--A-AA-TATTCA-TTCCATATCCGGGCACATG--TCCGGTTTT-AAA-TGTACCAGTTGGGATTTCC-----TATG---TGTTTT-CAC-TGAC-TGAACATTTTT----GTTTTGAGTATA
gi|133769 : AAT-CACCGATTTTGTTT-GTTACAAGCTCAA-ACTGGATTTCAGA-CTGCCCCTTTA--A-AA-TA-TTATTTCCATATCCAAGCTCACA--TCCGGTTTT-AAA-TGTACCCTATGGGAGTTCA-----CATG---TA-TTT-TAC-TGGC-GAAAC-TTTTG----GTTTTCAGAATA
gi|133770 : AAT-TACCATTTCTCTTT-GTAACAGACCCAT-ATTTAATTTCATG-TTGTGTTTT-----------------TCCACATCCAGGCACACG--TCCGGCTTTAAAA-TGCACTATATGGAATTTCA-----TATT---TAAATT-TATGTGATATAAAC-TTTTT----GTCTTAAGT
gi|133771 : CCGATTCATTTT-GTCTCAGGCCCGA-ATTCAGTTTCTT--TTGCGTTTTTA--A-AA-TA-GTATGGCTACATCCAGGAACACA--TCCGGCTTT--AA-T----------GAATTTCC-----TATG---TA-TGT-TAC-TGGC-TAAAC-ATTTT----GTTTTGAGTATA
gi|133772 : ATTCTGTTT-GTTACTGACTCAA-ATTAAATTT-------GTGTCTTCATGATAA-TA-GTATGTCCACATCCAGTCACACA--CTCAGCTT--GAA-TGTACCTTACGGGATTTCC-----CATG---TATTTT-TAC-TGAT-TTCAC-TTTTT----GTTTTGAGTATA
gi|133773 : T-GTTACAAACCCAA-ATTCAATTTAAGA-CTGCGCCTTGA--A-AAATA-CCATTTACATATCCAGGCACACA--TCTGGCTTT-AAG-TGAACCTTATGGGATTCCC-----CATG---TATTCT-TAA-TGAC-TAAAC-TTTTG----GTTTTCAGTATA
gi|133774 : TTCATATTTAGGCA-ACA--GCCGGCTTC-AGA-TGTACCCTATGGTATTTCC-----CTTG---GA-TTT-TAC-TGTT-TTAAC-ATTTT----GTTTTGAGTATA
gi|133775 : TCCATATTCCGGCACACA--CCCGGCTGT-AAA-TGTACCCTATGG
gi|133776 : TCCATATTCAGGCA-ACG--CCCAGTTGT-AAA-TGTACCCTATGG
gi|133777 : CATATTCCCGCACACA--TCCGGCTGT-AAA-TGTACCCTATGGTAT