lowQualScore : 44 333 1111 3333
lowQualScore : 6 33 1 555 3 5555 22 3 7777
lowQualScore : . .. . ... . .... .. . ....
lowQualScore : 0 11 5 000 5 8888 22 2 8888
consensus : TATGTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGAT-TTCTT-AATNT----GTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAAAAACTAGTACAATAATCACCCGTCCGGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATA
Reference ( gi|16515 ) : TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGAT-TTCT---ATAT----GTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAAAA--TAGTACAATAATCACCCGTCCGGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATA
gi|16521 : TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGAT-TTCT---ATAT----GTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAAAAACTAGTACAATAATTACCCGTCCGGTTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATA
gi|16524 : TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGAT-TTCT---ATAT----GTCAACCAATAAATGAAGACATTCTCAGT--ATAGTGTCTAATA-TTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAAAAC-TAGTACAATAATCACCCGTCCAGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTGAAGCCCATACCCTCTCACGGCAACCAGTATA
gi|16518 : TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGAT-TTCT---ATAT----GTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATA-TTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATATAAATAATGGAGATTAAGATCATTGAAAAAAAAAACTAGTACAAAAATCACCCGTCCGGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATA
gi|16522 : TATGTAACTATAGGCCTTGTTT--TACAGATCTCATGGCTAGAT-TTTT---ATAT----GTCAACCAATAAATGAAGTTATTATCAGT--ATAGTGTCTAATAT
gi|16519 : TATGTAACTATAGGCCTTGTTT--TACAGATCTCATGGCTAGAT-TTTT---ATAT----GTCAACCAATAAATGAAGTTATTATCAGT--ATAGTGTCTAATAT
gi|16525 : TATGTAACTATAGGCCTTGTTT--TACAGATCTCATGGCTAGAT-TTTT---ATAT----GTCAACCAATAAATTAAGTTATTATCAGT--ATAGTGTCTAATAT
gi|16523 : TATGTAACAATAGACCCTGTCT--TATAGATCTCACGGCTAGAT-TTCT---ATATATATGTCAATCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAGTATTT
gi|16526 : TATGTAACAATAGACCCAGTCT--TACAGATCTCACGGCTAGAT-TTCT---ATATATATGTCAATCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAGTATTTaacta
gi|16520 : TATGTAACAATAGACCCTGTCT--TATAGATCTTACGGCTAGAT-TTCT---ATATATATGTCAATCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAGTATTT
gi|16516 : TATGTAAGAATAGACCCTGTCT--TATAGATCTCACGGCTAGAT-TTCT---ATATATATGTCAATCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAGTATTTaacta
gi|16517 : TATGTAACTATAGGCCTTGTTT--TACAGGTATCATGGCTAGAT-TTTT---ATAT----GTCAACCAATAAATGAAGTTATTATCAGT--TTAGTGTCTAATATaacta
gi|16529 : TATGTAATTATAGGTCCTGTCT--TACAGATCTCATGGCTCGAT-TTCTTGAATCT----GCAAACCAATAAATGAAGATATTCTCAGT--GCAGTGTCTAATAT
gi|16527 : TATTTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGAT-TTCTTCAATCA----GCCCACCAATAAATGAAGATATTCTCAGC--ATA
gi|16528 : TATTTAACTATAGGCCCTGTCT--TACAGATCTCATGGCTACAT-TTCTTCAATCT----GCCAACCAATAA---AAGATATTTTCAGTGGATA-TGGTTAATA
gi|16530 : TATGTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGAT-TTCTTGAATCT----GTGAACCATTTAAT---GATATTCTCAGT--ATAGaaat
gi|16531 : TATTTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGAT-TTCT---
gi|16532 : TAACTATAGGCCTTTTCT--TACAGATCTCACGGCTAGAT-TTCTTGAATCT----GTGAACCAATTAATGAAGATATTCTCAGT--GTTTTGTCTAATATTT
gi|16533 : CTATAGGCCTTGTCT--TACAGATCTCACGGCTAGGT-TTCTTGAATCT----GTGAACCAATTAATGAAGATATTCTCAGT--GTAGTGTCTAATATaacta
gi|16534 : TAGGCCTTGTCT--TACAGATCTCATGGCTAGAT-TTCTTCAATCT----GTCAACCAATAAATGAAGATATTCTCAGT--GTAGTGTCTAATAT
gi|16535 : TAGGCCTTGTCT--TACAGATCTCATGGCTACAT-TTCTTCAATCT----GTCAACCATTTAAT---GATATTCTCAGT--ATAGgtaacta
gi|16536 : ATACAGATCTCATGACTAGAT-TTCTTCAATCT----GCAAACCAATAAATGAAGATATTCTCAAT--GCAG
gi|16537 : ACATATCTCATGGCTAGATATTGT---GTATCT--GTCAACCACTAAAAAAAGATATTATCATT--GTA
gi|16541 : TCACGGCTAGAT-TTCTTGAATCT----GCCAACCAATAAATGAAGTTATTCTCAGT--ATAG
gi|16540 : TCACGGCTAGAT-TTCTTGAATCT----GCCAACCAATAAATGAAGTTATTCTCAGT--ATAG
gi|16539 : TCACGGCTAGAT-TTCTTGAATCT----GCCAACCAATAAATGAAGTTATTCTCAGT--ATAG
gi|16538 : TCACGGCTAGAT-TTCTTGAATCT----GCCAACCAATACATGAAGTTATTCTCAGT--ATAG
gi|16542 : TTTTAA-AAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAC----TAGTACAATAATCACCCGTCCGGCTCGGTTTTATACAAAACATATACATAGCTACTAGTCAAGCCAATACCCTCTCACGGCAACCAGCATA
Alignments
lowQualScore : 11 33333 1 1
lowQualScore : 0 00 1 88888 1 22 0 0 0 0
lowQualScore : . .. . ..... . .. . . . .
lowQualScore : 3 00 5 55555 0 11 6 8 6 8
consensus : TATGTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGAT-TTCT-T-A-ATCTGTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAAAAACTAGTACAATAATCACCCGTCCGGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATA
Reference ( family-675 ) : TATGTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGAT-TTCT-T-A-ATNTGTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAAAAACTAGTACAATAATCACCCGTCCGGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATA
gi|16515 : TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGAT-TTCT-----ATATGTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAAAA--TAGTACAATAATCACCCGTCCGGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATA
gi|16516 : TATGTAAGAATAGACCCTGTCT--TATAGATCTCACGGCTAGAT-TTCTAT-ATATATGTCAATCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAGTATTT
gi|16517 : TATGTAACTATAGGCCTTGTTT--TACAGGTATCATGGCTAGAT-TTTT-----ATATGTCAACCAATAAATGAAGTTATTATCAGT--TTAGTGTCTAATATaacta
gi|16518 : TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGAT-TTCT-----ATATGTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTT-ACTAAGATAAAACATTAAGTTGACAGGAAAGATACATATAAATAATGGAGATTAAGATCATTGAAAAAAAAAACTAGTACAAAAATCACCCGTCCGGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATA
gi|16519 : TATGTAACTATAGGCCTTGTTT--TACAGATCTCATGGCTAGAT-TTTT-----ATATGTCAACCAATAAATGAAGTTATTATCAGT--ATAGTGTCTAATAT
gi|16520 : TATGTAACAATAGACCCTGTCT--TATAGATCTTACGGCTAGAT-TTCTAT-ATATATGTCAATCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAGTATTT
gi|16521 : TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGAT-TTCT-----ATATGTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAAAAACTAGTACAATAATTACCCGTCCGGTTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATAaacta
gi|16522 : TATGTAACTATAGGCCTTGTTT--TACAGATCTCATGGCTAGAT-TTTT-----ATATGTCAACCAATAAATGAAGTTATTATCAGT--ATAGTGTCTAATAT
gi|16523 : TATGTAACAATAGACCCTGTCT--TATAGATCTCACGGCTAGAT-TTCTAT-ATATATGTCAATCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAGTATTT
gi|16524 : TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGAT-TTCT-----ATATGTCAACCAATAAATGAAGACATTCTCAGT--ATAGTGTCTAATATTTT-ACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAA-AAAAACTAGTACAATAATCACCCGTCCAGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTGAAGCCCATACCCTCTCACGGCAACCAGTATAaacta
gi|16525 : TATGTAACTATAGGCCTTGTTT--TACAGATCTCATGGCTAGAT-TTTT-----ATATGTCAACCAATAAATTAAGTTATTATCAGT--ATAGTGTCTAATAT
gi|16526 : TATGTAACAATAGACCCAGTCT--TACAGATCTCACGGCTAGAT-TTCTAT-ATATATGTCAATCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAGTATTT
gi|16527 : TATTTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGAT-TTCT-TCA-ATCAGCCCACCAATAAATGAAGATATTCTCAGC--ATA
gi|16528 : TATTTAACTATAGGCCCTGTCT--TACAGATCTCATGGCTACAT-TTCT-TCA-ATCTGCCAACCAATAA---AAGATATTTTCAGTGGATA-TGGTTAATA
gi|16529 : TATGTAATTATAGGTCCTGTCT--TACAGATCTCATGGCTCGAT-TTCT-TGA-ATCTGCAAACCAATAAATGAAGATATTCTCAGT--GCAGTGTCTAATATaaat
gi|16530 : TATGTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGAT-TTCT-TGA-ATCTGTGAACCATTTAAT---GATATTCTCAGT--ATAG
gi|16531 : TATTTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGAT-TTCT-
gi|16532 : TAACTATAGGCCTTTTCT--TACAGATCTCACGGCTAGAT-TTCT-TGA-ATCTGTGAACCAATTAATGAAGATATTCTCAGT--GTTTTGTCTAATATTT
gi|16533 : CTATAGGCCTTGTCT--TACAGATCTCACGGCTAGGT-TTCT-TGA-ATCTGTGAACCAATTAATGAAGATATTCTCAGT--GTAGTGTCTAATATaacta
gi|16534 : TAGGCCTTGTCT--TACAGATCTCATGGCTAGAT-TTCT-TCA-ATCTGTCAACCAATAAATGAAGATATTCTCAGT--GTAGTGTCTAATAT
gi|16535 : TAGGCCTTGTCT--TACAGATCTCATGGCTACAT-TTCT-TCA-ATCTGTCAACCATTTAAT---GATATTCTCAGT--ATAGgtaacta
gi|16536 : --TACAGATCTCATGACTAGAT-TTCT-TCA-ATCTGCAAACCAATAAATGAAGATATTCTCAAT--GCAG
gi|16537 : aACATATCTCATGGCTAGATATTGT-G-T-ATCTGTCAACCACTAAAAAAAGATATTATCATT--GTA
gi|16538 : TCACGGCTAGAT-TTCT-TGA-ATCTGCCAACCAATACATGAAGTTATTCTCAGT--ATAG
gi|16539 : TCACGGCTAGAT-TTCT-TGA-ATCTGCCAACCAATAAATGAAGTTATTCTCAGT--ATAG
gi|16540 : TCACGGCTAGAT-TTCT-TGA-ATCTGCCAACCAATAAATGAAGTTATTCTCAGT--ATAG
gi|16541 : TCACGGCTAGAT-TTCT-TGA-ATCTGCCAACCAATAAATGAAGTTATTCTCAGT--ATAG
gi|16542 : TTTTAA-AAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAA----AACTAGTACAATAATCACCCGTCCGGCTCGGTTTTATACAAAACATATACATAGCTACTAGTCAAGCCAATACCCTCTCACGGCAACCAGCATA
Alignments
lowQualScore : 11 33333 1 1
lowQualScore : 0 00 1 88888 1 22 0 0 0 0
lowQualScore : . .. . ..... . .. . . . .
lowQualScore : 3 00 5 55555 5 11 6 8 6 8
consensus : TATGTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGAT-TTCT-T-A-ATCTGTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAAAAACTAGTACAATAATCACCCGTCCGGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATA
Reference ( family-675 ) : TATGTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGAT-TTCT-T-A-ATCTGTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAAAAACTAGTACAATAATCACCCGTCCGGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATA
gi|16515 : TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGAT-TTCT-----ATATGTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAAAA--TAGTACAATAATCACCCGTCCGGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATA
gi|16516 : TATGTAAGAATAGACCCTGTCT--TATAGATCTCACGGCTAGAT-TTCTAT-ATATATGTCAATCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAGTATTT
gi|16517 : TATGTAACTATAGGCCTTGTTT--TACAGGTATCATGGCTAGAT-TTTT-----ATATGTCAACCAATAAATGAAGTTATTATCAGT--TTAGTGTCTAATATaacta
gi|16518 : TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGAT-TTCT-----ATATGTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTT-ACTAAGATAAAACATTAAGTTGACAGGAAAGATACATATAAATAATGGAGATTAAGATCATTGAAAAAAAAAACTAGTACAAAAATCACCCGTCCGGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATA
gi|16519 : TATGTAACTATAGGCCTTGTTT--TACAGATCTCATGGCTAGAT-TTTT-----ATATGTCAACCAATAAATGAAGTTATTATCAGT--ATAGTGTCTAATAT
gi|16520 : TATGTAACAATAGACCCTGTCT--TATAGATCTTACGGCTAGAT-TTCTAT-ATATATGTCAATCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAGTATTT
gi|16521 : TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGAT-TTCT-----ATATGTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAAAAACTAGTACAATAATTACCCGTCCGGTTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATAaacta
gi|16522 : TATGTAACTATAGGCCTTGTTT--TACAGATCTCATGGCTAGAT-TTTT-----ATATGTCAACCAATAAATGAAGTTATTATCAGT--ATAGTGTCTAATAT
gi|16523 : TATGTAACAATAGACCCTGTCT--TATAGATCTCACGGCTAGAT-TTCTAT-ATATATGTCAATCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAGTATTT
gi|16524 : TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGAT-TTCT-----ATATGTCAACCAATAAATGAAGACATTCTCAGT--ATAGTGTCTAATATTTT-ACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAA-AAAAACTAGTACAATAATCACCCGTCCAGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTGAAGCCCATACCCTCTCACGGCAACCAGTATAaacta
gi|16525 : TATGTAACTATAGGCCTTGTTT--TACAGATCTCATGGCTAGAT-TTTT-----ATATGTCAACCAATAAATTAAGTTATTATCAGT--ATAGTGTCTAATAT
gi|16526 : TATGTAACAATAGACCCAGTCT--TACAGATCTCACGGCTAGAT-TTCTAT-ATATATGTCAATCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAGTATTT
gi|16527 : TATTTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGAT-TTCT-TCA-ATCAGCCCACCAATAAATGAAGATATTCTCAGC--ATA
gi|16528 : TATTTAACTATAGGCCCTGTCT--TACAGATCTCATGGCTACAT-TTCT-TCA-ATCTGCCAACCAATAA---AAGATATTTTCAGTGGATA-TGGTTAATA
gi|16529 : TATGTAATTATAGGTCCTGTCT--TACAGATCTCATGGCTCGAT-TTCT-TGA-ATCTGCAAACCAATAAATGAAGATATTCTCAGT--GCAGTGTCTAATATaaat
gi|16530 : TATGTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGAT-TTCT-TGA-ATCTGTGAACCATTTAAT---GATATTCTCAGT--ATAG
gi|16531 : TATTTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGAT-TTCT-
gi|16532 : TAACTATAGGCCTTTTCT--TACAGATCTCACGGCTAGAT-TTCT-TGA-ATCTGTGAACCAATTAATGAAGATATTCTCAGT--GTTTTGTCTAATATTT
gi|16533 : CTATAGGCCTTGTCT--TACAGATCTCACGGCTAGGT-TTCT-TGA-ATCTGTGAACCAATTAATGAAGATATTCTCAGT--GTAGTGTCTAATATaacta
gi|16534 : TAGGCCTTGTCT--TACAGATCTCATGGCTAGAT-TTCT-TCA-ATCTGTCAACCAATAAATGAAGATATTCTCAGT--GTAGTGTCTAATAT
gi|16535 : TAGGCCTTGTCT--TACAGATCTCATGGCTACAT-TTCT-TCA-ATCTGTCAACCATTTAAT---GATATTCTCAGT--ATAGgtaacta
gi|16536 : --TACAGATCTCATGACTAGAT-TTCT-TCA-ATCTGCAAACCAATAAATGAAGATATTCTCAAT--GCAG
gi|16537 : aACATATCTCATGGCTAGATATTGT-G-T-ATCTGTCAACCACTAAAAAAAGATATTATCATT--GTA
gi|16538 : TCACGGCTAGAT-TTCT-TGA-ATCTGCCAACCAATACATGAAGTTATTCTCAGT--ATAG
gi|16539 : TCACGGCTAGAT-TTCT-TGA-ATCTGCCAACCAATAAATGAAGTTATTCTCAGT--ATAG
gi|16540 : TCACGGCTAGAT-TTCT-TGA-ATCTGCCAACCAATAAATGAAGTTATTCTCAGT--ATAG
gi|16541 : TCACGGCTAGAT-TTCT-TGA-ATCTGCCAACCAATAAATGAAGTTATTCTCAGT--ATAG
gi|16542 : TTTTAA-AAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAA----AACTAGTACAATAATCACCCGTCCGGCTCGGTTTTATACAAAACATATACATAGCTACTAGTCAAGCCAATACCCTCTCACGGCAACCAGCATA
blockSeqs : AA A ATAT A GG T A
blockSeqs : AA . ATAT A . T A
blockSeqs : AA . ATAT A . . .
blockSeqs : . . ATAT A . . .
blockSeqs : . . TCA A .
blockSeqs : . . TCA A .
blockSeqs : . . TGA A .
blockSeqs : . . TGA A .
blockSeqs : . . TGA A .
blockSeqs : . . TGA A .
blockSeqs : . . TCA A .
blockSeqs : . . TCA C .
blockSeqs : . . TCA C .
blockSeqs : . . TGA C .
blockSeqs : . . TGA C .
blockSeqs : . . TGA C .
blockSeqs : . . TGA C .
blockSeqs : . . GT C .
blockSeqs : . . . C .
blockSeqs : . . . C .
blockSeqs : . . . C .
blockSeqs : . . C .
blockSeqs : . . C .
blockSeqs : . . C .
blockSeqs : . . C .
blockSeqs : .
blockSeqCons : ** TGA**
originalCons : TATGTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGAT-TTCT-T-A-ATCTGTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAAAAACTAGTACAATAATCACCCGTCCGGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATA
finalCons : TATGTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGAT-TTCTTGA--ATCTGTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAAAAACTAGTACAATAATCACCCGTCCGGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATA
Alignments
lowQualScore : 11 2222 1 1
lowQualScore : 0 00 0000 1 22 0 0 0 0
lowQualScore : . .. .... . .. . . . .
lowQualScore : 3 00 3333 5 11 6 8 6 8
consensus : TATGTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGATTTCT-TGAATCTGTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAAAAACTAGTACAATAATCACCCGTCCGGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATA
Reference ( family-675 ) : TATGTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGATTTCT-TGAATCTGTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAAAAACTAGTACAATAATCACCCGTCCGGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATA
gi|16515 : TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCT----ATATGTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAAAA--TAGTACAATAATCACCCGTCCGGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATA
gi|16516 : TATGTAAGAATAGACCCTGTCT--TATAGATCTCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAGTATTT
gi|16517 : TATGTAACTATAGGCCTTGTTT--TACAGGTATCATGGCTAGATTTTT----ATATGTCAACCAATAAATGAAGTTATTATCAGT--TTAGTGTCTAATATaacta
gi|16518 : TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCT----ATATGTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTT-ACTAAGATAAAACATTAAGTTGACAGGAAAGATACATATAAATAATGGAGATTAAGATCATTGAAAAAAAAAACTAGTACAAAAATCACCCGTCCGGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATA
gi|16519 : TATGTAACTATAGGCCTTGTTT--TACAGATCTCATGGCTAGATTTTT----ATATGTCAACCAATAAATGAAGTTATTATCAGT--ATAGTGTCTAATAT
gi|16520 : TATGTAACAATAGACCCTGTCT--TATAGATCTTACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAGTATTT
gi|16521 : TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCT----ATATGTCAACCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAATATTTTTACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAAAAAAAACTAGTACAATAATTACCCGTCCGGTTCGGTTGTATACAAAACGTATACATAGCTACTAGTCAAGCCCATACCCTCTCACGGCAACCAGTATAaacta
gi|16522 : TATGTAACTATAGGCCTTGTTT--TACAGATCTCATGGCTAGATTTTT----ATATGTCAACCAATAAATGAAGTTATTATCAGT--ATAGTGTCTAATAT
gi|16523 : TATGTAACAATAGACCCTGTCT--TATAGATCTCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAGTATTT
gi|16524 : TATTTAACTATAGGCCCTGTCTAATACAGATCTCATGGCTAGATTTCT----ATATGTCAACCAATAAATGAAGACATTCTCAGT--ATAGTGTCTAATATTTT-ACTAAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAA-AAAAACTAGTACAATAATCACCCGTCCAGCTCGGTTGTATACAAAACGTATACATAGCTACTAGTGAAGCCCATACCCTCTCACGGCAACCAGTATAaacta
gi|16525 : TATGTAACTATAGGCCTTGTTT--TACAGATCTCATGGCTAGATTTTT----ATATGTCAACCAATAAATTAAGTTATTATCAGT--ATAGTGTCTAATAT
gi|16526 : TATGTAACAATAGACCCAGTCT--TACAGATCTCACGGCTAGATTTCTATATATATGTCAATCAATAAATGAAGATATTCTCAGT--ATAGTGTCTAGTATTT
gi|16527 : TATTTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGATTTCT-TCAATCAGCCCACCAATAAATGAAGATATTCTCAGC--ATA
gi|16528 : TATTTAACTATAGGCCCTGTCT--TACAGATCTCATGGCTACATTTCT-TCAATCTGCCAACCAATAA---AAGATATTTTCAGTGGATA-TGGTTAATA
gi|16529 : TATGTAATTATAGGTCCTGTCT--TACAGATCTCATGGCTCGATTTCT-TGAATCTGCAAACCAATAAATGAAGATATTCTCAGT--GCAGTGTCTAATATaaat
gi|16530 : TATGTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGATTTCT-TGAATCTGTGAACCATTTAAT---GATATTCTCAGT--ATAG
gi|16531 : TATTTAACTATAGGCCCTGTCT--TACAGATCTCACGGCTAGATTTCT-
gi|16532 : TAACTATAGGCCTTTTCT--TACAGATCTCACGGCTAGATTTCT-TGAATCTGTGAACCAATTAATGAAGATATTCTCAGT--GTTTTGTCTAATATTT
gi|16533 : CTATAGGCCTTGTCT--TACAGATCTCACGGCTAGGTTTCT-TGAATCTGTGAACCAATTAATGAAGATATTCTCAGT--GTAGTGTCTAATATaacta
gi|16534 : TAGGCCTTGTCT--TACAGATCTCATGGCTAGATTTCT-TCAATCTGTCAACCAATAAATGAAGATATTCTCAGT--GTAGTGTCTAATAT
gi|16535 : TAGGCCTTGTCT--TACAGATCTCATGGCTACATTTCT-TCAATCTGTCAACCATTTAAT---GATATTCTCAGT--ATAGgtaacta
gi|16536 : --TACAGATCTCATGACTAGATTTCT-TCAATCTGCAAACCAATAAATGAAGATATTCTCAAT--GCAG
gi|16537 : aACATATCTCATGGCTAGATATTG-TGTATCTGTCAACCACTAAAAAAAGATATTATCATT--GTA
gi|16538 : TCACGGCTAGATTTCT-TGAATCTGCCAACCAATACATGAAGTTATTCTCAGT--ATAG
gi|16539 : TCACGGCTAGATTTCT-TGAATCTGCCAACCAATAAATGAAGTTATTCTCAGT--ATAG
gi|16540 : TCACGGCTAGATTTCT-TGAATCTGCCAACCAATAAATGAAGTTATTCTCAGT--ATAG
gi|16541 : TCACGGCTAGATTTCT-TGAATCTGCCAACCAATAAATGAAGTTATTCTCAGT--ATAG
gi|16542 : TTTTAA-AAGATAAAACATTAAGTTGACAGGAAAGATACATAAAAATAATGGAGATTAAGATCATTGAAAA----AACTAGTACAATAATCACCCGTCCGGCTCGGTTTTATACAAAACATATACATAGCTACTAGTCAAGCCAATACCCTCTCACGGCAACCAGCATA