lowQualScore : 1 111111 2222222222222222222222222222222222222222222222222222222222222222 11 111 111111
lowQualScore : 0 55 2 55 2 2 22 1 333 1 333 777777 0 1 6666666666666666666666666666666666666666666666666666666666666666 3 1 1 5 1 3333 1 00 66666 1 3 3 111 9 222 44444 444444 333 1 1 1 2 1 2 1 4 2
lowQualScore : . .. . .. . . .. . ... . ... ...... . . ................................................................ . . . . . .... . .. ..... . . . ... . ... ..... ...... ... . . . . . . . . .
lowQualScore : 2 33 2 33 0 5 66 6 333 9 333 555555 9 9 1111111111111111111111111111111111111111111111111111111111111111 5 7 7 1 7 7777 7 88 33333 7 8 5 777 9 888 00000 111111 777 5 5 5 5 7 9 7 8 1
consensus : TTTCTGTACCAATGCGTAAGTTGTTTTTTAATGCTTACATNTT-NC-CNCATTT--AGACT---ACTGTT-G---TGC---AATTTGGGGAAA-TTGTAAT--TT-TC---A---CTTGT-N-GA---T----AA-A-AT-----------T-----GT-T-AGATTTCAAAA-GA-GAGCTGCTAGACTTAT-TC----TCGAT-AAAG--AT-TACG-ATACNCCNTCT---ACNGA---ATTAT-----TC-ACTGAGCTT--A-AATG-GA-TGACGTTTCCTGAAAGAGTTAAA-TNTC-AAAAAGCAGTACTCATGTAT
Reference ( gi|19881 ) : TTTCTGTACCAATGCGTAAGTTGTTTTTTAATGCTTACATTTT-AC-CACATTT--ATATT---ACTGTT-G---TGT---TATTTGGGGAAA-TTGTAAT-ATT-TC---A---CTTGT-A-GA---T----AA-A-AT-----------T-----GT-T-AGGTTTCAAAA-GA-GAGCTGCTAGACTTAT-TC----TCGAT-AAAA--AT-TACG-ATACTCCTTCT---ACTGA---ATTAT-----TC-ACAGAGCTT--A-AATG-GA-TGACGTTTCCTGAAAGAGTTAAA-TTTC-AAAAAGCAGTACTTATATAT
gi|19884 : TTTCTGTACCAATGCGTAAGTTGTTTTTTA-TGCTTACATTTT-AC-CACATTT--AGATT---ACTGTT-G---TGT---AATTCATAGAAA-TTGTAAT-ATT-TC---A---CTTGT-A-GA---T----AA-A-AT-----------T-----GT-T-AGGTTTCAAAA-GA-GAGCTGCTAGACTTAT-TA----TCGAT-TAAC--AT-TACG-ATACTCCTTCT---AATGA---A-TAT-----TC-ACAGAGCTG--A-AATG-GA-TGACGTTTCCTGAAAGAGTTAAA-TTTC-TAAAAGCAGTACTTATAAAT
gi|19882 : TTTCTGTACTAATGCGTAAGTTGTTTTTTAATGCTTACATTTT-AC-CACATTT--AGATT---ACTGTT-A---TGT---AATTTAGGGAAA-TTGTAAT-AAT-TC---A---CGTGT-A-GA---T----AC-A-AT-----------T-----GC-T-AGGTTTTAAAA-GA-GAGCTGCTAGACTAAT-TC----TCGAT-AAAA--A--TACA-ATAATCCTTCT---ACTGA---ATTAT-----T--ACAGAGCTT--A-AATG-GA-TGTCGTTTCCTGAAAGAGTTAAA-TTTC-AAAAAACAGTATTTATATAT
gi|19883 : TTTCTGTACTAATGCGTAAGTTGTTTTTTAATGCTTACATTTT-AC-CACATTT--AGATT---ACTGTT-A---TGT---AATTTAGGTAAA-TTGTAAT-AAT-TC---A---CGTGT-A-GA---T----AC-A-AT-----------T-----GC-T-AGGTTTTAAAA-GA-GAGCTGCTAGACTAAT-TC----TCGAT-AAAA--A--TACA-ATAATCCTTCT---ACTGA---A-TAA-----TC-ACAGAGCTT--A-AATG-GA-TGTCGTTTCCTGAAAGAGTTAAA-TTTC-AAAAAGCAGTACTTATATAT
gi|19885 : TTTCTGTACCAATGCGTAAGTTGTTTT--AATGCTTACATTTA-AT-TCCATTT--AGATA---ACTGTT-G---TGT---TATTTGGGGAAA-TTGTAAT-GTT-TC---A---CTTGT-A-GA---T----AA-A-AT-----------T-----GT-T-AGGTTTCAAAACGA-GAGCTGTTAGACTTAA-TC----TCGAT-AAAA--AA-TACG-ACACTCCTTCC---ACAGA---ATTAT-----TC-ACAGAGTTA--A-AAT--GA-TAACGTTTTCTGAAAAAGTTAAA-TTTCAAAAAAGCAGTACTTATGTAT
gi|19886 : TTTCTGTATCAAAGCGTAAGTTGTTTTTTAATGCTAACATTTT-AC-CATATTT--AGATT---ACGGTT-G---TGT---TATTTGGGAAAA-TTGTAAT-ATT-TC---A---CTTGT-A-GA---T----AA-A-TT-----------T-----GT-T-AAGTTTTAAAA-GT-GAGCTACTATA--TAT-TC----CCGAT-CAAA--AT-CACG-ATACTCCTTCT---ACAGA---ATTAT-----TC-ATTAAGCAT--A-ACTG-GA-TAGCGTTTCCTGAAAGAGTTTAA-TTTC-AAAAAGCAGTACTCATGTAT
gi|19887 : TACCTATGAGGAATTTATTTAC-AATTCTTACATACT-TC-CTCATCT--AGACT---ATTGCT-G---TAC---AATATGGGGAAA-TTGCAAC--TC-TG---A---CCTATCC-GG---C----AA-A-AT-----------A-----TT-G-AAATTTCAAAA-AC-GTGCTGCAAGAC-TAT-CC----TTGAA-AAGAC-AT-T--G-ATACACCAT------CTGAATCATTAT-----TT-AATGATCTA--A-AATA-GA-TGAAATTCCATATAAGAGTAGAA-TATA-AAAAGGC
gi|19888 : ATGCGGAAAATGTTGTTCAATGCCTATATTTTCAC-CCTATTTTGATATTTTGATTGTT-GCTGTGT---TGTTTGTGGGAA-TTGTAA----T-TC---A---TATTT-A-GAAACT----AA-A-CT-----------T-----GT-A-AGATTTCAAAA-
gi|19889 : TGCGTAAATTAATTTT-ATTGCTTACGTCTT-GC-CACATCT--GGACT---CCTGTT-T---T-T---AACATGAGGAAT-TTGT--T-CTTCTG---AT--CTCAT-G-GA---T----TC-T-AT-----------A-----GT-C-AGATTCCAAAA-GA-GATCTGCTTGAATTATGTT----TGGAC-AAAG--AT-TATG-ACACACCGTTC---AATGA---ATTAT-----TTTAC-GAATTT--A-AATT-GA-TGGAATTCCCTGATAGAGTTAAA-TATC-AAAAAGCAACACT
gi|19890 : CGCAAGCTCTGTTTTAATGCATATATACT-GC-CACATTT--ATATT---ATTGTT-G---TAC---AATTTGGGGCAA-CTGCAA----T-TCAGAA---CTTTT-G-AA---C----AA-T-CT-----------C-----CT-T-AAATTACAAAA-AACGTGCAGCGAGAATAAT-TC----TCAAC-AAGG--AC-TTTGAATA-TCTATCT---ACAGA---ATTAT-----TT-GATCAACTT--G-GCTG-GA-TGACATTCCAGGAAAAAATCCAA-TATA-AAAAGGC--TACT
gi|19891 : CGCAAACTCTTTTTTAATGCATATATTCT-GC-CACATTT--AGATT---ATTGTT-G---TAC---CATTTGGGGCAA-CTGCAA----T-TCAGAA---CTTTT-G-AA---C----AA-T-CT-----------C-----CT-A-AAATTCCAAAA-AC-GTGCAGCGAGAATAAT-AC----TCAAC-AAGG--AC-TTTG-ATTATCCATCT---GCAGA---ATTAT-----TT-GATCAACTT--G-GCTG-AA-TGACATTCCAGGAAAGATTCCAA-TATA-AAAAGGC--TACT
gi|19892 : GCAAATTATATGTTAATGGTTACGTTTT-GT-CACAATT--GGATT---ATTGTT-G---TTC---AATTTGGGGAAA-TTAT--TCCTT-TG---A---TCTAT-A-GT---C----AA-A---------------------C-T-AA-----AAAA-AA-AATCTGCTACA---AT-T-----------------AT-TATG-ACACACCGTCC---ATTGA---ACAAT-----TT-TCCGAAATG--A-AATG-GAGTGA-ATTTCCTGATAAAGTTGAA-TATC-AACAAGCAATAATAATGTA
gi|19893 : AAATTATTTTACAATTCTTACATACT-TC-CTCATCT--AGACT---ATTGCT-G---TAC---AATATGGGGAAA-TTGCAAC--TC-TG---A---CCTAT-CTGA---C----AA-C-A------------T-----AT-TAAAATTTCAAAA-AC-GTGCTGCAAGACTTAT-CC----TTGAT-AAAGACAT-T--G-ATACACCATCTGAAAC------ATTAT-----TT-AATGATCTA--A-AATG-GA-TGAAATTCCATGAAAGAGTAGAA-TATA-AAAAGGC
gi|19894 : AAATTATTTTACAATTCTTACATACT-TC-CTCATCT--AGACT---ATTGCT-G---TAC---AATATGGGGAAA-TTGCAAC--TC-TG---A---CCTAT-CTGA---C----AA-C-GT-----------A-----TT-T-AAATTTCAAAA-AC-GTGCTGCAAGACTTAT-CC----TTGAT-AAAGACAT-T--G-ATACACCATCTGAAAC------ATTAT-----TT-AATGATCTA--A-AATG-GA-TAAAATTCCATGAAAGAGTAGAA-TATA-AAAAGGC
gi|19895 : AAATTATTTTACAATTCTTACATACT-TC-CTCATCT--AGACT---ATTGCT-G---TAC---AATATGGGGAAA-TTGCAAC--TC-TG---A---CCTAT-CTGA---C----AA-C-A------------T-----AT-TAAAATTTCAAAA-AT-GTGCTGCAAGACTTAT-CC----TTGAT-AAAGACAT-T--G-ATACACCATCTGAAAC------ATTAT-----TT-AATAATCTA--A-AATG-GA-TGAAATTCCATGAAAGAG-TAGA-GTAC-AAAAAG
gi|19896 : AATTATTTTACAATTCTTACATACT-TC-CTCATCT--AGACT---ATAGCT-G---TAC---AATATGGGGAAA-TTGCAAC--TC-TG---A---CCTAT-CTGA---C----AA-C-AT-----------A-----CT-A-AAATTTCAAAA-AT-GTGCTGCAAGACTTGT-CC----TTGAT-AAAGACAT-T--G-ATACACCGTCTGAAAC------ATTAT-----TT-AATGATCTA--A-AATG-GA-TGAC
gi|19897 : TGTATTTAAATGCTTACGCTTT-GC--ACATTT--GGACT---CCTTTT-G---TTC---AATTTGGGTAAG-TTGT------T-CC---T---CT------GA---TCTCAGG-A-AT-----------TCTATAGT-C-AAACTTCGAAA-GA-TATCTGCTAGA-TTAA-CC----TGGAC-AAAG--AT-AATG-ACACATCGTCA---ATTGA---ACTAT-----TT-TCCAAATTG--A-AATG-GA-TGGATTCTCCTGATAGAGTTACA-TATC-AAAATGGAATACTAATG
gi|19898 : TGTATTTAAATGCTCACGCTTT-GC--ACATTT--GGACT---ACT-----------------TTGGGTAAG-TTGT------T-CC---T---CT------GA---TCTCAGG-A-AT-----------TCTATAGT-C-AAACTTTAAAA-GA-TATCTGCTAGA-TTAT-CC----TGGAC-AAAG--AT-AATG-ACACATCGTCA---ATTGA---ACTAT-----TT-TCCAAATTG--A-AATG-GA-TGGATTCTCCTAATAGAGTTAAA-TATC-AAAATGGAATACTAATA
gi|19899 : TTTATAATTCTTACAAACT-TC-CTCATCT--AGACT---ATTGCT-G---TAC---AATATGGGGAAA-TTGCAAC--TC-TG---A---CCTATCC-GA---C----AACATAT-----------T-----G----AAATTTCAAAA-AT-GTGCTGCAAAATTTAT-CC----TTGAT-AAAG--A
gi|19900 : TTAA-ACTTACGGTTT-AAACATATTT---TATT---TCTATTTA---TATACATGTATACAGAAA-T----AT-GTT-AA---A---CTTGT--------T----AG-A-ATGCAGCGTTTGCC-----GT-T-ATGTTTCAGAA-GA-GAGCTGCTAGATTTAT-TC----TCGAT-AAAA--AAATACG-AT---TCTTCT---ACATA---ATTCT-----TC-ACTAAGTTT--A-AATG-AA-TGACGTTTCCTGAAAGGGTTGAATTTTT-AAAAGGCAGTTTTCATGTATcatcagtacaccatct
gi|19901 : GCTTACATATT-AC-TTCATTT--AGATA---ACGGTT-G---TGT---TACTTGGGGGAAGTTGTAAT-GTT-TC---A---CTTGT-A-GA---T----AA-A-AT-----------T-----GT-A-AGATTTCAAAA-GA-GAGCTGCTAGACTTTT-TC----TCAATAAAAA--AA-TACG-GTATTCCTTCT---ACATA---ATTAT-----TC-ATTAAGCTT--A-AACT-GA-TGACGTTTCCTGAAAGGGTTAAA-TTTC-TAAAGGCAGTACTCATGTAT
gi|19902 : CATTT--GGACT---ACTGTT-A---TTC---AATTTGGGGAAG-T-GT--T--CT-TC---AGATCTCAT-G--------------A-AT-----------T-----CTAT-AG---TCAATC-GA-GATCT--TAGAATTAT-CT----TGGCC-AAAG--AT-AATG-ACACGCCGTCC---AGTGA---TTTTT-----TT-CC---GTTTTGA-AATTTGA-TGAAATTCCCTGATAAAGTTAAA-TATC-AAAAAGCAATACTAATCTAT
gi|19903 : T-A-TA---T----AG-A-AT-----------T-----CA-A-AGGTTTCAAGA-GA-AAGCTGCTAGATTTAT-TC----TCGAT-AAAA--AT-TACG-ATACTCCTTCT---ACAGA---ATTAT-----TC-ACTAAGTTT--A-AATG-GC-TGACGTTTTCTGAAAGAGTTAAA-TTTC-AAAAAGCAGTACTCATGTAT
gi|19904 : A---T----AA-A-TT-----------C-----GT-T-AGATTTTAAAA-GA-GAGCTGCTAGACGTAT-TCGGAATCGAT-AAAA--AA-TACG-ATACTCCTTCT---ACAGA---ATTAT-----TA-ACTAAGCTT--A-AATG-TA-TGAAGTTTCCTGAAATATTTAAA-TTTC-AAAAAGCAGTGCTCATGTAT
gi|19905 : -----------T-----GT-T-AGGTTTCAAAA-GA-GAGCTGCTATACATAT-TC----TCGAT-AAAA--AT-TACA-ATACTCCTTCT---ACATA---ATTAT-----TCTGTA-AGCAT--A-AAAG-GA-TGACGTTTCCTGAAA
gi|19906 : -AAAA--A---AAA-ACACATCTTCT---A--GA---ATTATCTTTTTT-TCAAAATGG--A-AATG-GT-TGAAATTTCCTGATAGAGTTAAA-TATC-AAAGCGCAACACTAATGTA
gi|19907 : ta-ATACTCCTTCT---ACTGA---ATTAT-----TC-ACAGAGATT--A-AATG-GA-TGAAGTTTCCTGAAAGAGTGCAA-TTTC-AAAAAGCAGTGCTTATAAAT
gi|19908 : GA---ATTAT-----TC-ACTAAGCTT--A-ATTG-CA-TGACGTTTACCGAAAGGGTTAAA-TTTT-AAAAGGCCCTTCTCATGTAT
gi|19909 : CTT--ATAATG-GA-TGACGTTTCATGAAAGAGTTAAA-TTTC-AAAAAGCAGTACTCGTGTAT
Alignments
lowQualScore : 222 111 111111 111111
lowQualScore : 2 1 1 1 777777777 3 1 0 000 666 555 44 333 77777777 333 000000 22 3 1 1 4 1 3333 44 111111 1 1 1 11 222 22 3 222 1 1 1 2 1 1 1 2
lowQualScore : . . . . ......... . . . ... ... ... .. ... ........ ... ...... .. . . . . . .... .. ...... . . . .. ... .. . ... . . . . . . . .
lowQualScore : 8 0 0 0 666666666 2 9 4 111 777 222 00 888 77777777 111 333333 11 2 6 7 5 7 5555 66 999999 6 6 0 99 888 33 0 777 5 5 5 0 6 0 6 3
consensus : TTTCTGTACCAATGCGTAAGTTGTTTTTTAATGCTTACATNTTNCCNC---------ATTTAGACTACTGTTGTGCAATTTGGGGAAA-TTGTAAT-TTTC---A---CTTG-T-N-GA---T----AA-A-ATT-----GT-TAGA-TTTCAAAA-GA-GAGCTGCTAGACTTAT-TC----TCGATAAAG--A--T-TACG-ATACNCCNTCTACNGA---ATTATTC-ACTGAGCTT--A-AATG-GA-TGACGTTTCCTGAAAGAGTTAAA-TNTC-AAAAAGCAGTACTCATGTAT
Reference ( family-667 ) : TTTCTGTACCAATGCGTAAGTTGTTTTTTAATGCTTACATNTTNCCNC---------ATTTAGACTACTGTTGTGCAATTTGGGGAAA-TTGTAAT-TTTC---A---CTTG-T-N-GA---T----AA-A-ATT-----GT-TAGA-TTTCAAAA-GA-GAGCTGCTAGACTTAT-TC----TCGATAAAG--A--T-TACG-ATACNCCNTCTACNGA---ATTATTC-ACTGAGCTT--A-AATG-GA-TGACGTTTCCTGAAAGAGTTAAA-TNTC-AAAAAGCAGTACTCATGTAT
gi|19881 : TTTCTGTACCAATGCGTAAGTTGTTTTTTAATGCTTACATTTTACCAC---------ATTTATATTACTGTTGTGTTATTTGGGGAAA-TTGTAATATTTC---A---CTTG-T-A-GA---T----AA-A-ATT-----GT-TAGG-TTTCAAAA-GA-GAGCTGCTAGACTTAT-TC----TCGATAAAA--A--T-TACG-ATACTCCTTCTACTGA---ATTATTC-ACAGAGCTT--A-AATG-GA-TGACGTTTCCTGAAAGAGTTAAA-TTTC-AAAAAGCAGTACTTATATAT
gi|19882 : TTTCTGTACTAATGCGTAAGTTGTTTTTTAATGCTTACATTTTACCAC---------ATTTAGATTACTGTTATGTAATTTAGGGAAA-TTGTAATAATTC---A---CGTG-T-A-GA---T----AC-A-ATT-----GC-TAGG-TTTTAAAA-GA-GAGCTGCTAGACTAAT-TC----TCGATAAAA--A----TACA-ATAATCCTTCTACTGA---ATTATT--ACAGAGCTT--A-AATG-GA-TGTCGTTTCCTGAAAGAGTTAAA-TTTC-AAAAAACAGTATTTATATAT
gi|19883 : TTTCTGTACTAATGCGTAAGTTGTTTTTTAATGCTTACATTTTACCAC---------ATTTAGATTACTGTTATGTAATTTAGGTAAA-TTGTAATAATTC---A---CGTG-T-A-GA---T----AC-A-ATT-----GC-TAGG-TTTTAAAA-GA-GAGCTGCTAGACTAAT-TC----TCGATAAAA--A----TACA-ATAATCCTTCTACTGA---A-TAATC-ACAGAGCTT--A-AATG-GA-TGTCGTTTCCTGAAAGAGTTAAA-TTTC-AAAAAGCAGTACTTATATAT
gi|19884 : TTTCTGTACCAATGCGTAAGTTGTTTTTT-ATGCTTACATTTTACCAC---------ATTTAGATTACTGTTGTGTAATTCATAGAAA-TTGTAATATTTC---A---CTTG-T-A-GA---T----AA-A-ATT-----GT-TAGG-TTTCAAAA-GA-GAGCTGCTAGACTTAT-TA----TCGATTAAC--A--T-TACG-ATACTCCTTCTAATGA---A-TATTC-ACAGAGCTG--A-AATG-GA-TGACGTTTCCTGAAAGAGTTAAA-TTTC-TAAAAGCAGTACTTAT
gi|19885 : TTTCTGTACCAATGCGTAAGTTG--TTTTAATGCTTACATTTAATTCC---------ATTTAGATAACTGTTGTGTTATTTGGGGAAA-TTGTAATGTTTC---A---CTTG-T-A-GA---T----AA-A-ATT-----GT-TAGG-TTTCAAAACGA-GAGCTGTTAGACTTAA-TC----TCGATAAAA--A--A-TACG-ACACTCCTTCCACAGA---ATTATTC-ACAGAGTTA--A-AAT--GA-TAACGTTTTCTGAAAAAGTTAAA-TTTCAAAAAAGCAGTACTTATGTATaaat
gi|19886 : TTTCTGTATCAAAGCGTAAGTTGTTTTTTAATGCTAACATTTTACCAT---------ATTTAGATTACGGTTGTGTTATTTGGGAAAA-TTGTAATATTTC---A---CTTG-T-A-GA---T----AA-A-TTT-----GT-TAAG-TTTTAAAA-GT-GAGCTACTATA--TAT-TC----CCGATCAAA--A--T-CACG-ATACTCCTTCTACAGA---ATTATTC-ATTAAGCAT--A-ACTG-GA-TAGCGTTTCCTGAAAGAGTTTAA-TTTC-AAAAAGCAGTACTCATGTAT
gi|19887 : TACCTATGAGGAATTTATTTAC-AATTCTTACATACTTCCTC---------ATCTAGACTATTGCTGTACAATATGGGGAAA-TTGCAAC-TCTG---A---CCTA-TCC-GG---C----AA-A-ATA-----TT-GAAA-TTTCAAAA-AC-GTGCTGCAAGAC-TAT-CC----TTGA-AAAGACA--T-T--G-ATACACCATCT---GAATCATTATTT-AATGATCTA--A-AATA-GA-TGAAATTCCATATAAGAGTAGAA-TATA-AAAAGGC
gi|19888 : ATGCGGAAAATGTTGTTCAATGCCTATATTTTCACCCTATTTTGATATTTTGATTGTTGCTGTGTTGTTTGTGGGAA-TTGTAA---TTC---A---TATT-T-A-GAAACT----AA-A-CTT-----GT-AAGA-TTTCAAAA-
gi|19889 : TGCGTAAATTAATTTT-ATTGCTTACGTCTTGCCAC---------ATCTGGACTCCTGTTTT-TAACATGAGGAAT-TTGTTCT-TCTG---AT--CTCA-T-G-GA---T----TC-T-ATA-----GT-CAGA-TTCCAAAA-GA-GATCTGCTTGAATTATGTT----TGGACAAAG--A--T-TATG-ACACACCGTTCAATGA---ATTATTTTAC-GAATTT--A-AATT-GA-TGGAATTCCCTGATAGAGTTAAA-TATC-AAAAAGCAACACT
gi|19890 : CGCAAGCTCTGTTTTAATGCATATATACTGCCAC---------ATTTATATTATTGTTGTACAATTTGGGGCAA-CTGCAA---TTCAGAA---CTTT-T-G-AA---C----AA-T-CTC-----CT-TAAA-TTACAAAA-AACGTGCAGCGAGAATAAT-TC----TCAACAAGG--A--C-TTTGAATA-TCTATCTACAGA---ATTATTT-GATCAACTT--G-GCTG-GA-TGACATTCCAGGAAAAAATCCAA-TATA-AAAAGGC--TACT
gi|19891 : CGCAAACTCTTTTTTAATGCATATATTCTGCCAC---------ATTTAGATTATTGTTGTACCATTTGGGGCAA-CTGCAA---TTCAGAA---CTTT-T-G-AA---C----AA-T-CTC-----CT-AAAA-TTCCAAAA-AC-GTGCAGCGAGAATAAT-AC----TCAACAAGG--A--C-TTTG-ATTATCCATCTGCAGA---ATTATTT-GATCAACTT--G-GCTG-AA-TGACATTCCAGGAAAGATTCCAA-TATA-AAAAGGC--TACT
gi|19892 : GCAAATTATATGTTAATGGTTACGTTTTGTCAC---------AATTGGATTATTGTTGTTCAATTTGGGGAAA-TTA------TTC---C---TTTGAT-C-TA---T----A------------GT-CAAA-CTAAAAAA-AA-AATCTGCTACA---AT-T----------------A--T-TATG-ACACACCGTCCATTGA---ACAATTT-TCCGAAATG--A-AATG-GAGTGA-ATTTCCTGATAAAGTTGAA-TATC-AACAAGCAATAATAATGTA
gi|19893 : AAATTATTTTACAATTCTTACATACTTCCTC---------ATCTAGACTATTGCTGTACAATATGGGGAAA-TTGCAAC-TCTG---A---CCTA-T-CTGA---C----AA-C-AT------AT-TAAAATTTCAAAA-AC-GTGCTGCAAGACTTAT-CC----TTGATAAAG--ACAT-T--G-ATACACCATCTGAAAC---ATTATTT-AATGATCTA--A-AATG-GA-TGAAATTCCATGAAAGAGTAGAA-TATA-AAAAGGC
gi|19894 : AAATTATTTTACAATTCTTACATACTTCCTC---------ATCTAGACTATTGCTGTACAATATGGGGAAA-TTGCAAC-TCTG---A---CCTA-T-CTGA---C----AA-C-GTA-----TT-TAAA-TTTCAAAA-AC-GTGCTGCAAGACTTAT-CC----TTGATAAAGACA--T-T--G-ATACACCATCTGAAAC---ATTATTT-AATGATCTA--A-AATG-GA-TAAAATTCCATGAAAGAGTAGAA-TATA-AAAAGGC
gi|19895 : AAATTATTTTACAATTCTTACATACTTCCTC---------ATCTAGACTATTGCTGTACAATATGGGGAAA-TTGCAAC-TCTG---A---CCTA-T-CTGA---C----AA-C-AT------AT-TAAAATTTCAAAA-AT-GTGCTGCAAGACTTAT-CC----TTGATAAAG--ACAT-T--G-ATACACCATCTGAAAC---ATTATTT-AATAATCTA--A-AATG-GA-TGAAATTCCATGAAAGAGTAGAG-TA-C-AAAAAG
gi|19896 : AATTATTTTACAATTCTTACATACTTCCTC---------ATCTAGACTATAGCTGTACAATATGGGGAAA-TTGCAAC-TCTG---A---CCTA-T-CTGA---C----AA-C-ATA-----CT-AAAA-TTTCAAAA-AT-GTGCTGCAAGACTTGT-CC----TTGATAAAG--ACAT-T--G-ATACACCGTCTGAAAC---ATTATTT-AATGATCTA--A-AATG-GA-TGAC
gi|19897 : TGTATTTAAATGCTTACGCTTTGC-AC---------ATTTGGACTCCTTTTGTTCAATTTGGGTAAG-TTGT-----TCC---T---CT-------GA---TCTCAGG-A-ATTCTATAGT-CAAA-CTTCGAAA-GA-TATCTGCTAGA-TTAA-CC----TGGACAAAG--A--T-AATG-ACACATCGTCAATTGA---ACTATTT-TCCAAATTG--A-AATG-GA-TGGATTCTCCTGATAGAGTTACA-TATC-AAAATGGAATACTAATGT
gi|19898 : TGTATTTAAATGCTCACGCTTTGC-AC---------ATTTGGACTACT----------TTGGGTAAG-TTGT-----TCC---T---CT-------GA---TCTCAGG-A-ATTCTATAGT-CAAA-CTTTAAAA-GA-TATCTGCTAGA-TTAT-CC----TGGACAAAG--A--T-AATG-ACACATCGTCAATTGA---ACTATTT-TCCAAATTG--A-AATG-GA-TGGATTCTCCTAATAGAGTTAAA-TATC-AAAATGGAATACTAATAT
gi|19899 : TTTATAATTCTTACAAACTTCCTC---------ATCTAGACTATTGCTGTACAATATGGGGAAA-TTGCAAC-TCTG---A---CCTA-TCC-GA---C----AACATATT-----G---AAA-TTTCAAAA-AT-GTGCTGCAAAATTTAT-CC----TTGATAAAG--A--C-ATCA-GTACACCATCT
gi|19900 : -----GT-TATG-TTTCAGAA-GA-GAGCTGCTAGATTTAT-TC----TCGATAAAA--A--AATACG-AT---TCTTCTACATA---ATTCTTC-ACTAAGTTT--A-AATG-AA-TGACGTTTCCTGAAAGGGTTGAATTTTT-AAAAGGCAGTTTTCATGTAT
gi|19901 : ttaaacttacggtttaaacatattttatttctatttatatacatgtatacagaaatatgttaaacttgttagaatgcagcgtttgccGCTTACATATTACTTC---------ATTTAGATAACGGTTGTGTTACTTGGGGGAAGTTGTAATGTTTC---A---CTTG-T-A-GA---T----AA-A-ATT-----GT-AAGA-TTTCAAAA-GA-GAGCTGCTAGACTTTT-TC----TCAATAAAA--A--AATACG-GTATTCCTTCTACATA---ATTATTC-ATTAAGCTT--A-AACT-GA-TGACGTTTCCTGAAAGGGTTAAA-TTTC-TAAAGGCAGTACTCATGTAT
gi|19902 : C---------ATTTGGACTACTGTTATTCAATTTGGGGAAG-T-GT--T-CTTC---AGATCTCA-T-G--------------A-ATT-----CTATAG----TCAATC-GA-GATCT--TAGAATTAT-CT----TGGCCAAAG--A--T-AATG-ACACGCCGTCCAGTGA---TTTTTTT-CC---GTTTTGA-AATTTGA-TGAAATTCCCTGATAAAGTTAAA-TATC-AAAAAGCAATACTAATCTAT
gi|19903 : A---T----AG-A-ATT-----CA-AAGG-TTTCAAGA-GA-AAGCTGCTAGATTTAT-TC----TCGATAAAA--A--T-TACG-ATACTCCTTCTACAGA---ATTATTC-ACTAAGTTT--A-AATG-GC-TGACGTTTTCTGAAAGAGTTAAA-TTTC-AAAAAGCAGTACTCATGTAT
gi|19904 : tatA---T----AA-A-TTC-----GT-TAGA-TTTTAAAA-GA-GAGCTGCTAGACGTAT-TCGGAATCGATAAAA--A--A-TACG-ATACTCCTTCTACAGA---ATTATTA-ACTAAGCTT--A-AATG-TA-TGAAGTTTCCTGAAATATTTAAA-TTTC-AAAAAGCAGTGCTCATGTAT
gi|19905 : T-----GT-TAGG-TTTCAAAA-GA-GAGCTGCTATACATAT-TC----TCGATAAAA--A--T-TACA-ATACTCCTTCTACATA---ATTATTC-TGTAAGCAT--A-AAAG-GA-TGACGTTTCCTGAAA
gi|19906 : --A-AATG-GT-TGAAATTTCCTGATAGAGTTAAA-TATC-AAAGCGCAACACTAATGTA
gi|19907 : taaaaaaaaaacacatcttctagaattatctttttttcaaaatgg-ATACTCCTTCTACTGA---ATTATTC-ACAGAGATT--A-AATG-GA-TGAAGTTTCCTGAAAGAGTGCAA-TTTC-AAAAAGCAGTGCTTAT
gi|19908 : GA---ATTATTC-ACTAAGCTT--A-ATTG-CA-TGACGTTTACCGAAAGGGTTAAA-TTTT-AAAAGGCCCTTCTCATGTATaaat
gi|19909 : CTT--ATAATG-GA-TGACGTTTCATGAAAGAGTTAAA-TTTC-AAAAAGCAGTACTCGTGTAT
Alignments
lowQualScore : 222 111 111111 111111
lowQualScore : 2 1 1 1 777777777 3 1 0 000 666 555 44 333 77777777 333 000000 22 3 1 1 4 1 3333 44 111111 1 1 1 11 222 22 3 222 1 1 1 2 1 1 1 2
lowQualScore : . . . . ......... . . . ... ... ... .. ... ........ ... ...... .. . . . . . .... .. ...... . . . .. ... .. . ... . . . . . . . .
lowQualScore : 8 0 0 0 666666666 2 9 4 111 777 222 00 888 77777777 111 333333 11 2 6 7 5 7 5555 66 999999 6 6 0 99 888 33 0 777 5 5 5 0 6 0 6 3
consensus : TTTCTGTACCAATGCGTAAGTTGTTTTTTAATGCTTACATNTTNCCNC---------ATTTAGACTACTGTTGTGCAATTTGGGGAAA-TTGTAAT-TTTC---A---CTTG-T-N-GA---T----AA-A-ATT-----GT-TAGA-TTTCAAAA-GA-GAGCTGCTAGACTTAT-TC----TCGATAAAG--A--T-TACG-ATACNCCNTCTACNGA---ATTATTC-ACTGAGCTT--A-AATG-GA-TGACGTTTCCTGAAAGAGTTAAA-TNTC-AAAAAGCAGTACTCATGTAT
Reference ( family-667 ) : TTTCTGTACCAATGCGTAAGTTGTTTTTTAATGCTTACATNTTNCCNC---------ATTTAGACTACTGTTGTGCAATTTGGGGAAA-TTGTAAT-TTTC---A---CTTG-T-N-GA---T----AA-A-ATT-----GT-TAGA-TTTCAAAA-GA-GAGCTGCTAGACTTAT-TC----TCGATAAAG--A--T-TACG-ATACNCCNTCTACNGA---ATTATTC-ACTGAGCTT--A-AATG-GA-TGACGTTTCCTGAAAGAGTTAAA-TNTC-AAAAAGCAGTACTCATGTAT
gi|19881 : TTTCTGTACCAATGCGTAAGTTGTTTTTTAATGCTTACATTTTACCAC---------ATTTATATTACTGTTGTGTTATTTGGGGAAA-TTGTAATATTTC---A---CTTG-T-A-GA---T----AA-A-ATT-----GT-TAGG-TTTCAAAA-GA-GAGCTGCTAGACTTAT-TC----TCGATAAAA--A--T-TACG-ATACTCCTTCTACTGA---ATTATTC-ACAGAGCTT--A-AATG-GA-TGACGTTTCCTGAAAGAGTTAAA-TTTC-AAAAAGCAGTACTTATATAT
gi|19882 : TTTCTGTACTAATGCGTAAGTTGTTTTTTAATGCTTACATTTTACCAC---------ATTTAGATTACTGTTATGTAATTTAGGGAAA-TTGTAATAATTC---A---CGTG-T-A-GA---T----AC-A-ATT-----GC-TAGG-TTTTAAAA-GA-GAGCTGCTAGACTAAT-TC----TCGATAAAA--A----TACA-ATAATCCTTCTACTGA---ATTATT--ACAGAGCTT--A-AATG-GA-TGTCGTTTCCTGAAAGAGTTAAA-TTTC-AAAAAACAGTATTTATATAT
gi|19883 : TTTCTGTACTAATGCGTAAGTTGTTTTTTAATGCTTACATTTTACCAC---------ATTTAGATTACTGTTATGTAATTTAGGTAAA-TTGTAATAATTC---A---CGTG-T-A-GA---T----AC-A-ATT-----GC-TAGG-TTTTAAAA-GA-GAGCTGCTAGACTAAT-TC----TCGATAAAA--A----TACA-ATAATCCTTCTACTGA---A-TAATC-ACAGAGCTT--A-AATG-GA-TGTCGTTTCCTGAAAGAGTTAAA-TTTC-AAAAAGCAGTACTTATATAT
gi|19884 : TTTCTGTACCAATGCGTAAGTTGTTTTTT-ATGCTTACATTTTACCAC---------ATTTAGATTACTGTTGTGTAATTCATAGAAA-TTGTAATATTTC---A---CTTG-T-A-GA---T----AA-A-ATT-----GT-TAGG-TTTCAAAA-GA-GAGCTGCTAGACTTAT-TA----TCGATTAAC--A--T-TACG-ATACTCCTTCTAATGA---A-TATTC-ACAGAGCTG--A-AATG-GA-TGACGTTTCCTGAAAGAGTTAAA-TTTC-TAAAAGCAGTACTTAT
gi|19885 : TTTCTGTACCAATGCGTAAGTTG--TTTTAATGCTTACATTTAATTCC---------ATTTAGATAACTGTTGTGTTATTTGGGGAAA-TTGTAATGTTTC---A---CTTG-T-A-GA---T----AA-A-ATT-----GT-TAGG-TTTCAAAACGA-GAGCTGTTAGACTTAA-TC----TCGATAAAA--A--A-TACG-ACACTCCTTCCACAGA---ATTATTC-ACAGAGTTA--A-AAT--GA-TAACGTTTTCTGAAAAAGTTAAA-TTTCAAAAAAGCAGTACTTATGTATaaat
gi|19886 : TTTCTGTATCAAAGCGTAAGTTGTTTTTTAATGCTAACATTTTACCAT---------ATTTAGATTACGGTTGTGTTATTTGGGAAAA-TTGTAATATTTC---A---CTTG-T-A-GA---T----AA-A-TTT-----GT-TAAG-TTTTAAAA-GT-GAGCTACTATA--TAT-TC----CCGATCAAA--A--T-CACG-ATACTCCTTCTACAGA---ATTATTC-ATTAAGCAT--A-ACTG-GA-TAGCGTTTCCTGAAAGAGTTTAA-TTTC-AAAAAGCAGTACTCATGTAT
gi|19887 : TACCTATGAGGAATTTATTTAC-AATTCTTACATACTTCCTC---------ATCTAGACTATTGCTGTACAATATGGGGAAA-TTGCAAC-TCTG---A---CCTA-TCC-GG---C----AA-A-ATA-----TT-GAAA-TTTCAAAA-AC-GTGCTGCAAGAC-TAT-CC----TTGA-AAAGACA--T-T--G-ATACACCATCT---GAATCATTATTT-AATGATCTA--A-AATA-GA-TGAAATTCCATATAAGAGTAGAA-TATA-AAAAGGC
gi|19888 : ATGCGGAAAATGTTGTTCAATGCCTATATTTTCACCCTATTTTGATATTTTGATTGTTGCTGTGTTGTTTGTGGGAA-TTGTAA---TTC---A---TATT-T-A-GAAACT----AA-A-CTT-----GT-AAGA-TTTCAAAA-
gi|19889 : TGCGTAAATTAATTTT-ATTGCTTACGTCTTGCCAC---------ATCTGGACTCCTGTTTT-TAACATGAGGAAT-TTGTTCT-TCTG---AT--CTCA-T-G-GA---T----TC-T-ATA-----GT-CAGA-TTCCAAAA-GA-GATCTGCTTGAATTATGTT----TGGACAAAG--A--T-TATG-ACACACCGTTCAATGA---ATTATTTTAC-GAATTT--A-AATT-GA-TGGAATTCCCTGATAGAGTTAAA-TATC-AAAAAGCAACACT
gi|19890 : CGCAAGCTCTGTTTTAATGCATATATACTGCCAC---------ATTTATATTATTGTTGTACAATTTGGGGCAA-CTGCAA---TTCAGAA---CTTT-T-G-AA---C----AA-T-CTC-----CT-TAAA-TTACAAAA-AACGTGCAGCGAGAATAAT-TC----TCAACAAGG--A--C-TTTGAATA-TCTATCTACAGA---ATTATTT-GATCAACTT--G-GCTG-GA-TGACATTCCAGGAAAAAATCCAA-TATA-AAAAGGC--TACT
gi|19891 : CGCAAACTCTTTTTTAATGCATATATTCTGCCAC---------ATTTAGATTATTGTTGTACCATTTGGGGCAA-CTGCAA---TTCAGAA---CTTT-T-G-AA---C----AA-T-CTC-----CT-AAAA-TTCCAAAA-AC-GTGCAGCGAGAATAAT-AC----TCAACAAGG--A--C-TTTG-ATTATCCATCTGCAGA---ATTATTT-GATCAACTT--G-GCTG-AA-TGACATTCCAGGAAAGATTCCAA-TATA-AAAAGGC--TACT
gi|19892 : GCAAATTATATGTTAATGGTTACGTTTTGTCAC---------AATTGGATTATTGTTGTTCAATTTGGGGAAA-TTA------TTC---C---TTTGAT-C-TA---T----A------------GT-CAAA-CTAAAAAA-AA-AATCTGCTACA---AT-T----------------A--T-TATG-ACACACCGTCCATTGA---ACAATTT-TCCGAAATG--A-AATG-GAGTGA-ATTTCCTGATAAAGTTGAA-TATC-AACAAGCAATAATAATGTA
gi|19893 : AAATTATTTTACAATTCTTACATACTTCCTC---------ATCTAGACTATTGCTGTACAATATGGGGAAA-TTGCAAC-TCTG---A---CCTA-T-CTGA---C----AA-C-AT------AT-TAAAATTTCAAAA-AC-GTGCTGCAAGACTTAT-CC----TTGATAAAG--ACAT-T--G-ATACACCATCTGAAAC---ATTATTT-AATGATCTA--A-AATG-GA-TGAAATTCCATGAAAGAGTAGAA-TATA-AAAAGGC
gi|19894 : AAATTATTTTACAATTCTTACATACTTCCTC---------ATCTAGACTATTGCTGTACAATATGGGGAAA-TTGCAAC-TCTG---A---CCTA-T-CTGA---C----AA-C-GTA-----TT-TAAA-TTTCAAAA-AC-GTGCTGCAAGACTTAT-CC----TTGATAAAGACA--T-T--G-ATACACCATCTGAAAC---ATTATTT-AATGATCTA--A-AATG-GA-TAAAATTCCATGAAAGAGTAGAA-TATA-AAAAGGC
gi|19895 : AAATTATTTTACAATTCTTACATACTTCCTC---------ATCTAGACTATTGCTGTACAATATGGGGAAA-TTGCAAC-TCTG---A---CCTA-T-CTGA---C----AA-C-AT------AT-TAAAATTTCAAAA-AT-GTGCTGCAAGACTTAT-CC----TTGATAAAG--ACAT-T--G-ATACACCATCTGAAAC---ATTATTT-AATAATCTA--A-AATG-GA-TGAAATTCCATGAAAGAGTAGAG-TA-C-AAAAAG
gi|19896 : AATTATTTTACAATTCTTACATACTTCCTC---------ATCTAGACTATAGCTGTACAATATGGGGAAA-TTGCAAC-TCTG---A---CCTA-T-CTGA---C----AA-C-ATA-----CT-AAAA-TTTCAAAA-AT-GTGCTGCAAGACTTGT-CC----TTGATAAAG--ACAT-T--G-ATACACCGTCTGAAAC---ATTATTT-AATGATCTA--A-AATG-GA-TGAC
gi|19897 : TGTATTTAAATGCTTACGCTTTGC-AC---------ATTTGGACTCCTTTTGTTCAATTTGGGTAAG-TTGT-----TCC---T---CT-------GA---TCTCAGG-A-ATTCTATAGT-CAAA-CTTCGAAA-GA-TATCTGCTAGA-TTAA-CC----TGGACAAAG--A--T-AATG-ACACATCGTCAATTGA---ACTATTT-TCCAAATTG--A-AATG-GA-TGGATTCTCCTGATAGAGTTACA-TATC-AAAATGGAATACTAATGT
gi|19898 : TGTATTTAAATGCTCACGCTTTGC-AC---------ATTTGGACTACT----------TTGGGTAAG-TTGT-----TCC---T---CT-------GA---TCTCAGG-A-ATTCTATAGT-CAAA-CTTTAAAA-GA-TATCTGCTAGA-TTAT-CC----TGGACAAAG--A--T-AATG-ACACATCGTCAATTGA---ACTATTT-TCCAAATTG--A-AATG-GA-TGGATTCTCCTAATAGAGTTAAA-TATC-AAAATGGAATACTAATAT
gi|19899 : TTTATAATTCTTACAAACTTCCTC---------ATCTAGACTATTGCTGTACAATATGGGGAAA-TTGCAAC-TCTG---A---CCTA-TCC-GA---C----AACATATT-----G---AAA-TTTCAAAA-AT-GTGCTGCAAAATTTAT-CC----TTGATAAAG--A--C-ATCA-GTACACCATCT
gi|19900 : -----GT-TATG-TTTCAGAA-GA-GAGCTGCTAGATTTAT-TC----TCGATAAAA--A--AATACG-AT---TCTTCTACATA---ATTCTTC-ACTAAGTTT--A-AATG-AA-TGACGTTTCCTGAAAGGGTTGAATTTTT-AAAAGGCAGTTTTCATGTAT
gi|19901 : ttaaacttacggtttaaacatattttatttctatttatatacatgtatacagaaatatgttaaacttgttagaatgcagcgtttgccGCTTACATATTACTTC---------ATTTAGATAACGGTTGTGTTACTTGGGGGAAGTTGTAATGTTTC---A---CTTG-T-A-GA---T----AA-A-ATT-----GT-AAGA-TTTCAAAA-GA-GAGCTGCTAGACTTTT-TC----TCAATAAAA--A--AATACG-GTATTCCTTCTACATA---ATTATTC-ATTAAGCTT--A-AACT-GA-TGACGTTTCCTGAAAGGGTTAAA-TTTC-TAAAGGCAGTACTCATGTAT
gi|19902 : C---------ATTTGGACTACTGTTATTCAATTTGGGGAAG-T-GT--T-CTTC---AGATCTCA-T-G--------------A-ATT-----CTATAG----TCAATC-GA-GATCT--TAGAATTAT-CT----TGGCCAAAG--A--T-AATG-ACACGCCGTCCAGTGA---TTTTTTT-CC---GTTTTGA-AATTTGA-TGAAATTCCCTGATAAAGTTAAA-TATC-AAAAAGCAATACTAATCTAT
gi|19903 : A---T----AG-A-ATT-----CA-AAGG-TTTCAAGA-GA-AAGCTGCTAGATTTAT-TC----TCGATAAAA--A--T-TACG-ATACTCCTTCTACAGA---ATTATTC-ACTAAGTTT--A-AATG-GC-TGACGTTTTCTGAAAGAGTTAAA-TTTC-AAAAAGCAGTACTCATGTAT
gi|19904 : tatA---T----AA-A-TTC-----GT-TAGA-TTTTAAAA-GA-GAGCTGCTAGACGTAT-TCGGAATCGATAAAA--A--A-TACG-ATACTCCTTCTACAGA---ATTATTA-ACTAAGCTT--A-AATG-TA-TGAAGTTTCCTGAAATATTTAAA-TTTC-AAAAAGCAGTGCTCATGTAT
gi|19905 : T-----GT-TAGG-TTTCAAAA-GA-GAGCTGCTATACATAT-TC----TCGATAAAA--A--T-TACA-ATACTCCTTCTACATA---ATTATTC-TGTAAGCAT--A-AAAG-GA-TGACGTTTCCTGAAA
gi|19906 : --A-AATG-GT-TGAAATTTCCTGATAGAGTTAAA-TATC-AAAGCGCAACACTAATGTA
gi|19907 : taaaaaaaaaacacatcttctagaattatctttttttcaaaatgg-ATACTCCTTCTACTGA---ATTATTC-ACAGAGATT--A-AATG-GA-TGAAGTTTCCTGAAAGAGTGCAA-TTTC-AAAAAGCAGTGCTTAT
gi|19908 : GA---ATTATTC-ACTAAGCTT--A-ATTG-CA-TGACGTTTACCGAAAGGGTTAAA-TTTT-AAAAGGCCCTTCTCATGTATaaat
gi|19909 : CTT--ATAATG-GA-TGACGTTTCATGAAAGAGTTAAA-TTTC-AAAAAGCAGTACTCGTGTAT
blockSeqs : T T A A TATTTTGAT G G TAA AGA GAT GA CC TCTCA CAT TCTATA AT A C C C G GGAA AC CATT A T T CT ATC TT A TTG T T G C T T A T
blockSeqs : T T A A . G . TAA AGA T G CT TCTCA A TCTATA T A . . C . . AC CATT . T T CT . C A T . . . C . T . T
blockSeqs : T T A A . G . TAT . . G CT AACT A T T . . . C . . . CATT . T T AT . C A T . . . C . T . T
blockSeqs : T T A C . G . TGT . . G CT T A T T . . . C . . . AATA . T T CA . C A G . . . C . T . T
blockSeqs : T T A A . G . TAT . . G CT T A T T . . . C . . . AATA . T T CA . C T A . . . C . T . C
blockSeqs : C A T T . A . TGT . . G CC T A T T . . . A . . . TTA . A A AT . T T T . . . A . A . A
blockSeqs : T T C C . G . CT . . A A T A T G . . . A . . . ATA . A G CA . T T A . . . A . A . A
blockSeqs : T C G A . A . TT . . T A T A A A . . . A . . . TCA . T A CA . T T T . . . C . A . A
blockSeqs : T A G A . A . CT . . A A C T T C . . . C . . . TTA . T A TT . T C T . . . C . A . C
blockSeqs : C T G A . T . CT . . T A T T A T . . . C . . . CTT . A G AA . T T T . . . A . A . C
blockSeqs : C T G A . A . CT . . T A C T C A . . . C . . . CTT . A A AA . T T G . . . A . A . A
blockSeqs : C A T T . A . CT . . A A C C C C . . . C . . . TTA . A A AA . T T A . . . A . A . C
blockSeqs : C A T T . A . CT . . A G T C A T . . . T . . . TAA . A A AA . T T A . . . C . A . C
blockSeqs : A A T T . A . TC . . A G C C A T . . . T . . . TAA . A G TT . T C A . . . A . A . A
blockSeqs : A A T T . T . . . . A G C C T T . . . C . . . CAT . A G TT . T C A . . . A . A . T
blockSeqs : T T G A . A . . . . A C C A T A . . . A . . . TAA . A G CA . C T G . . . C . T . C
blockSeqs : . T G A . G . . . . G A C A T C . . . T . . . TTA . A A CA . C T G . . . C . T . C
blockSeqs : . A T T . T . . . . A G C A T C . . . C . . . ATA . T T GT . T T T . . . A . A .
blockSeqs : A A T . . . . . . . . T A C T . . . C . . . TTA . G T CA . C T T . . . C . T .
blockSeqs : . . . . . . . . T A T A . . . . . . . TA . T G CA . A T T . . . A . T .
blockSeqs : T A . A . . . . . . . TA . T T CA . C A T . . . C . A .
blockSeqs : . . . T . . . . . . . TT . T T CT . C T T . . . A . T .
blockSeqs : . T . . . . . . . TT . T T . . C . T . . . A . T .
blockSeqs : . . . . . T . . . T . . . C . T .
blockSeqs : T . . . C
blockSeqs : . . . .
blockSeqCons : CT*
originalCons : TTTCTGTACCAATGCGTAAGTTGTTTTTTAATGCTTACATNTTNCCNC---------ATTTAGACTACTGTTGTGCAATTTGGGGAAA-TTGTAAT-TTTC---A---CTTG-T-N-GA---T----AA-A-ATT-----GT-TAGA-TTTCAAAA-GA-GAGCTGCTAGACTTAT-TC----TCGATAAAG--A--T-TACG-ATACNCCNTCTACNGA---ATTATTC-ACTGAGCTT--A-AATG-GA-TGACGTTTCCTGAAAGAGTTAAA-TNTC-AAAAAGCAGTACTCATGTAT
finalCons : TTTCTGTACCAATGCGTAAGTTGTTTTTTAATGCTTACATNTTNCCNC---------ATTTAGACTACTGTTGTGCAATTTGGGGAAA-TTGTAACT-TTC---A---CTTG-T-N-GA---T----AA-A-ATT-----GT-TAGA-TTTCAAAA-GA-GAGCTGCTAGACTTAT-TC----TCGATAAAG--A--T-TACG-ATACNCCNTCTACNGA---ATTATTC-ACTGAGCTT--A-AATG-GA-TGACGTTTCCTGAAAGAGTTAAA-TNTC-AAAAAGCAGTACTCATGTAT
Alignments
lowQualScore : 11111 111 111111
lowQualScore : 2 1 1 1 777777777 3 1 77777 8888 999 3 333 333 5555 4 22 3 1 1 4 1 3333 44 111111 1 1 1 11 222 22 3 222 1 1 1 2 1 1 1 2
lowQualScore : . . . . ......... . . ..... .... ... . ... ... .... . .. . . . . . .... .. ...... . . . .. ... .. . ... . . . . . . . .
lowQualScore : 8 0 0 0 666666666 2 9 11111 6666 000 6 111 000 4444 5 11 2 6 7 5 7 5555 66 999999 6 6 0 99 888 33 0 777 5 5 5 0 6 0 6 3
consensus : TTTCTGTACCAATGCGTAAGTTGTTTTTTAATGCTTACATNTTNCCNC---------ATTTAGACTACTGTTGTGCAATTTGGGGAAA-TTGTAAC-T--CTC---A---CTTGT-N-GA---TAA-A-ATTGT-TAGA-TTTCAAAA-GA-GAGCTGCTAGACTTAT-TC----TCGATAAAG--A--T-TACG-ATACNCCNTCTACNGA---ATTATTC-ACTGAGCTT--A-AATG-GA-TGACGTTTCCTGAAAGAGTTAAA-TNTC-AAAAAGCAGTACTCATGTAT
Reference ( family-667 ) : TTTCTGTACCAATGCGTAAGTTGTTTTTTAATGCTTACATNTTNCCNC---------ATTTAGACTACTGTTGTGCAATTTGGGGAAA-TTGTAAC-T--TTC---A---CTTGT-N-GA---TAA-A-ATTGT-TAGA-TTTCAAAA-GA-GAGCTGCTAGACTTAT-TC----TCGATAAAG--A--T-TACG-ATACNCCNTCTACNGA---ATTATTC-ACTGAGCTT--A-AATG-GA-TGACGTTTCCTGAAAGAGTTAAA-TNTC-AAAAAGCAGTACTCATGTAT
gi|19881 : TTTCTGTACCAATGCGTAAGTTGTTTTTTAATGCTTACATTTTACCAC---------ATTTATATTACTGTTGTGTTATTTGGGGAAA-TTGTAATAT--TTC---A---CTTGT-A-GA---TAA-A-ATTGT-TAGG-TTTCAAAA-GA-GAGCTGCTAGACTTAT-TC----TCGATAAAA--A--T-TACG-ATACTCCTTCTACTGA---ATTATTC-ACAGAGCTT--A-AATG-GA-TGACGTTTCCTGAAAGAGTTAAA-TTTC-AAAAAGCAGTACTTATATAT
gi|19882 : TTTCTGTACTAATGCGTAAGTTGTTTTTTAATGCTTACATTTTACCAC---------ATTTAGATTACTGTTATGTAATTTAGGGAAA-TTGTAA--TAATTC---A---CGTGT-A-GA---TAC-A-ATTGC-TAGG-TTTTAAAA-GA-GAGCTGCTAGACTAAT-TC----TCGATAAAA--A----TACA-ATAATCCTTCTACTGA---ATTATT--ACAGAGCTT--A-AATG-GA-TGTCGTTTCCTGAAAGAGTTAAA-TTTC-AAAAAACAGTATTTATATAT
gi|19883 : TTTCTGTACTAATGCGTAAGTTGTTTTTTAATGCTTACATTTTACCAC---------ATTTAGATTACTGTTATGTAATTTAGGTAAA-TTGTAA--TAATTC---A---CGTGT-A-GA---TAC-A-ATTGC-TAGG-TTTTAAAA-GA-GAGCTGCTAGACTAAT-TC----TCGATAAAA--A----TACA-ATAATCCTTCTACTGA---A-TAATC-ACAGAGCTT--A-AATG-GA-TGTCGTTTCCTGAAAGAGTTAAA-TTTC-AAAAAGCAGTACTTATATAT
gi|19884 : TTTCTGTACCAATGCGTAAGTTGTTTTTT-ATGCTTACATTTTACCAC---------ATTTAGATTACTGTTGTGTAATTCATAGAAA-TTGTAATAT--TTC---A---CTTGT-A-GA---TAA-A-ATTGT-TAGG-TTTCAAAA-GA-GAGCTGCTAGACTTAT-TA----TCGATTAAC--A--T-TACG-ATACTCCTTCTAATGA---A-TATTC-ACAGAGCTG--A-AATG-GA-TGACGTTTCCTGAAAGAGTTAAA-TTTC-TAAAAGCAGTACTTAT
gi|19885 : TTTCTGTACCAATGCGTAAGTTG--TTTTAATGCTTACATTTAATTCC---------ATTTAGATAACTGTTGTGTTATTTGGGGAAA-TTGTAATGT--TTC---A---CTTGT-A-GA---TAA-A-ATTGT-TAGG-TTTCAAAACGA-GAGCTGTTAGACTTAA-TC----TCGATAAAA--A--A-TACG-ACACTCCTTCCACAGA---ATTATTC-ACAGAGTTA--A-AAT--GA-TAACGTTTTCTGAAAAAGTTAAA-TTTCAAAAAAGCAGTACTTATGTATaaat
gi|19886 : TTTCTGTATCAAAGCGTAAGTTGTTTTTTAATGCTAACATTTTACCAT---------ATTTAGATTACGGTTGTGTTATTTGGGAAAA-TTGTAATAT--TTC---A---CTTGT-A-GA---TAA-A-TTTGT-TAAG-TTTTAAAA-GT-GAGCTACTATA--TAT-TC----CCGATCAAA--A--T-CACG-ATACTCCTTCTACAGA---ATTATTC-ATTAAGCAT--A-ACTG-GA-TAGCGTTTCCTGAAAGAGTTTAA-TTTC-AAAAAGCAGTACTCATGTAT
gi|19887 : TACCTATGAGGAATTTATTTAC-AATTCTTACATACTTCCTC---------ATCTAGACTATTGCTGTACAATATGGGGAAA-TTGCAAC-T--CTG---A---CCTATCC-GG---CAA-A-ATATT-GAAA-TTTCAAAA-AC-GTGCTGCAAGAC-TAT-CC----TTGA-AAAGACA--T-T--G-ATACACCATCT---GAATCATTATTT-AATGATCTA--A-AATA-GA-TGAAATTCCATATAAGAGTAGAA-TATA-AAAAGGC
gi|19888 : ATGCGGAAAATGTTGTTCAATGCCTATATTTTCACCCTATTTTGATATTTTGATTGTTGCTGTGTTGTTTGTGGGAA-TTGTAA-----TTC---A---TATTT-A-GAAACTAA-A-CTTGT-AAGA-TTTCAAAA-
gi|19889 : TGCGTAAATTAATTTT-ATTGCTTACGTCTTGCCAC---------ATCTGGACTCCTGTTTT-TAACATGAGGAAT-TTGTTCT-T--CTG---AT--CTCAT-G-GA---TTC-T-ATAGT-CAGA-TTCCAAAA-GA-GATCTGCTTGAATTATGTT----TGGACAAAG--A--T-TATG-ACACACCGTTCAATGA---ATTATTTTAC-GAATTT--A-AATT-GA-TGGAATTCCCTGATAGAGTTAAA-TATC-AAAAAGCAACACT
gi|19890 : CGCAAGCTCTGTTTTAATGCATATATACTGCCAC---------ATTTATATTATTGTTGTACAATTTGGGGCAA-CTGCAA-----TTCAGAA---CTTTT-G-AA---CAA-T-CTCCT-TAAA-TTACAAAA-AACGTGCAGCGAGAATAAT-TC----TCAACAAGG--A--C-TTTGAATA-TCTATCTACAGA---ATTATTT-GATCAACTT--G-GCTG-GA-TGACATTCCAGGAAAAAATCCAA-TATA-AAAAGGC--TACT
gi|19891 : CGCAAACTCTTTTTTAATGCATATATTCTGCCAC---------ATTTAGATTATTGTTGTACCATTTGGGGCAA-CTGCAA-----TTCAGAA---CTTTT-G-AA---CAA-T-CTCCT-AAAA-TTCCAAAA-AC-GTGCAGCGAGAATAAT-AC----TCAACAAGG--A--C-TTTG-ATTATCCATCTGCAGA---ATTATTT-GATCAACTT--G-GCTG-AA-TGACATTCCAGGAAAGATTCCAA-TATA-AAAAGGC--TACT
gi|19892 : GCAAATTATATGTTAATGGTTACGTTTTGTCAC---------AATTGGATTATTGTTGTTCAATTTGGGGAAA-TTATTCC-T--TTG---A---TCT------A---TA-------GT-CAAA-CTAAAAAA-AA-AATCTGCTACA---AT-T----------------A--T-TATG-ACACACCGTCCATTGA---ACAATTT-TCCGAAATG--A-AATG-GAGTGA-ATTTCCTGATAAAGTTGAA-TATC-AACAAGCAATAATAATGTA
gi|19893 : AAATTATTTTACAATTCTTACATACTTCCTC---------ATCTAGACTATTGCTGTACAATATGGGGAAA-TTGCAAC-T--CTG---A---CCTAT-CTGA---CAA-C-AT-AT-TAAAATTTCAAAA-AC-GTGCTGCAAGACTTAT-CC----TTGATAAAG--ACAT-T--G-ATACACCATCTGAAAC---ATTATTT-AATGATCTA--A-AATG-GA-TGAAATTCCATGAAAGAGTAGAA-TATA-AAAAGGC
gi|19894 : AAATTATTTTACAATTCTTACATACTTCCTC---------ATCTAGACTATTGCTGTACAATATGGGGAAA-TTGCAAC-T--CTG---A---CCTAT-CTGA---CAA-C-GTATT-TAAA-TTTCAAAA-AC-GTGCTGCAAGACTTAT-CC----TTGATAAAGACA--T-T--G-ATACACCATCTGAAAC---ATTATTT-AATGATCTA--A-AATG-GA-TAAAATTCCATGAAAGAGTAGAA-TATA-AAAAGGC
gi|19895 : AAATTATTTTACAATTCTTACATACTTCCTC---------ATCTAGACTATTGCTGTACAATATGGGGAAA-TTGCAAC-T--CTG---A---CCTAT-CTGA---CAA-C-AT-AT-TAAAATTTCAAAA-AT-GTGCTGCAAGACTTAT-CC----TTGATAAAG--ACAT-T--G-ATACACCATCTGAAAC---ATTATTT-AATAATCTA--A-AATG-GA-TGAAATTCCATGAAAGAGTAGAG-TA-C-AAAAAG
gi|19896 : AATTATTTTACAATTCTTACATACTTCCTC---------ATCTAGACTATAGCTGTACAATATGGGGAAA-TTGCAAC-T--CTG---A---CCTAT-CTGA---CAA-C-ATACT-AAAA-TTTCAAAA-AT-GTGCTGCAAGACTTGT-CC----TTGATAAAG--ACAT-T--G-ATACACCGTCTGAAAC---ATTATTT-AATGATCTA--A-AATG-GA-TGAC
gi|19897 : TGTATTTAAATGCTTACGCTTTGC-AC---------ATTTGGACTCCTTTTGTTCAATTTGGGTAAG-TTGTTCC-T--CTG---AT--CTCAG-G-AA---TTC-T-ATAGT-CAAA-CTTCGAAA-GA-TATCTGCTAGA-TTAA-CC----TGGACAAAG--A--T-AATG-ACACATCGTCAATTGA---ACTATTT-TCCAAATTG--A-AATG-GA-TGGATTCTCCTGATAGAGTTACA-TATC-AAAATGGAATACTAATGT
gi|19898 : TGTATTTAAATGCTCACGCTTTGC-AC---------ATTTGGACTACT----------TTGGGTAAG-TTGTTCC-T--CTG---AT--CTCAG-G-AA---TTC-T-ATAGT-CAAA-CTTTAAAA-GA-TATCTGCTAGA-TTAT-CC----TGGACAAAG--A--T-AATG-ACACATCGTCAATTGA---ACTATTT-TCCAAATTG--A-AATG-GA-TGGATTCTCCTAATAGAGTTAAA-TATC-AAAATGGAATACTAATAT
gi|19899 : TTTATAATTCTTACAAACTTCCTC---------ATCTAGACTATTGCTGTACAATATGGGGAAA-TTGCAAC-T--CTG---A---CCTATCC-GA---CAACATATTG---AAA-TTTCAAAA-AT-GTGCTGCAAAATTTAT-CC----TTGATAAAG--A--C-ATCA-GTACACCATCT
gi|19900 : GT-TATG-TTTCAGAA-GA-GAGCTGCTAGATTTAT-TC----TCGATAAAA--A--AATACG-AT---TCTTCTACATA---ATTCTTC-ACTAAGTTT--A-AATG-AA-TGACGTTTCCTGAAAGGGTTGAATTTTT-AAAAGGCAGTTTTCATGTAT
gi|19901 : ttaaacttacggtttaaacatattttatttctatttatatacatgtatacagaaatatgttaaacttgttagaatgcagcgtttgccGCTTACATATTACTTC---------ATTTAGATAACGGTTGTGTTACTTGGGGGAAGTTGTAATGT--TTC---A---CTTGT-A-GA---TAA-A-ATTGT-AAGA-TTTCAAAA-GA-GAGCTGCTAGACTTTT-TC----TCAATAAAA--A--AATACG-GTATTCCTTCTACATA---ATTATTC-ATTAAGCTT--A-AACT-GA-TGACGTTTCCTGAAAGGGTTAAA-TTTC-TAAAGGCAGTACTCATGTAT
gi|19902 : C---------ATTTGGACTACTGTTATTCAATTTGGGGAAG-T-GT--T-C--TTC---AGATCTCAT-G----------A-ATTCTATAG----TCAATC-GA-GATCT--TAGAATTAT-CT----TGGCCAAAG--A--T-AATG-ACACGCCGTCCAGTGA---TTTTTTT-CC---GTTTTGA-AATTTGA-TGAAATTCCCTGATAAAGTTAAA-TATC-AAAAAGCAATACTAATCTAT
gi|19903 : A---TAG-A-ATTCA-AAGG-TTTCAAGA-GA-AAGCTGCTAGATTTAT-TC----TCGATAAAA--A--T-TACG-ATACTCCTTCTACAGA---ATTATTC-ACTAAGTTT--A-AATG-GC-TGACGTTTTCTGAAAGAGTTAAA-TTTC-AAAAAGCAGTACTCATGTAT
gi|19904 : tatA---TAA-A-TTCGT-TAGA-TTTTAAAA-GA-GAGCTGCTAGACGTAT-TCGGAATCGATAAAA--A--A-TACG-ATACTCCTTCTACAGA---ATTATTA-ACTAAGCTT--A-AATG-TA-TGAAGTTTCCTGAAATATTTAAA-TTTC-AAAAAGCAGTGCTCATGTAT
gi|19905 : TGT-TAGG-TTTCAAAA-GA-GAGCTGCTATACATAT-TC----TCGATAAAA--A--T-TACA-ATACTCCTTCTACATA---ATTATTC-TGTAAGCAT--A-AAAG-GA-TGACGTTTCCTGAAA
gi|19906 : --A-AATG-GT-TGAAATTTCCTGATAGAGTTAAA-TATC-AAAGCGCAACACTAATGTA
gi|19907 : taaaaaaaaaacacatcttctagaattatctttttttcaaaatgg-ATACTCCTTCTACTGA---ATTATTC-ACAGAGATT--A-AATG-GA-TGAAGTTTCCTGAAAGAGTGCAA-TTTC-AAAAAGCAGTGCTTAT
gi|19908 : GA---ATTATTC-ACTAAGCTT--A-ATTG-CA-TGACGTTTACCGAAAGGGTTAAA-TTTT-AAAAGGCCCTTCTCATGTATaaat
gi|19909 : CTT--ATAATG-GA-TGACGTTTCATGAAAGAGTTAAA-TTTC-AAAAAGCAGTACTCGTGTAT