lowQualScore : 111111 1111111111 1 1 111 3333333 22222222222 1 11111
lowQualScore : 55555 666666 33 888888 777777 55 4 2 33 2 1111111111 33 66666 5555 5 6 33 2 3 2 0 999 2 55 33 666 3 6 1 777777 33 9999999 5555 55555555555 2 6 2 2 666666 1 6 6 99999
lowQualScore : ..... ...... .. ...... ...... .. . . .. . .......... .. ..... .... . . .. . . . . ... . .. .. ... . . . ...... .. ....... .... ........... . . . . ...... . . . .....
lowQualScore : 00000 999999 11 666666 999999 88 4 2 11 2 9999999999 11 22222 3333 0 8 44 7 8 5 2 888 5 77 44 333 5 1 5 000000 22 5555555 0000 99999999999 7 7 4 7 444444 8 5 5 66666
consensus : CGTCGCGCACG-----GTAAT---GGTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTCATGTA-----TTTCG----TATCATTTA--TTTTACAAG-AAAATAGCCG-AATATCGGAATATCGGTTACTGC-AATGGAATCAT-GAT--TTTCTGCGGATATTAA--ATGNATCAAAACCAATGATATTACTG-----TACCTAC--G---TNA-ACTATGAGA----ATACAGTATACCATGTACAT-----AAC-T-AGCGGCGTCCATAGGTTT-TCGCCGTATT-AAAAGAACGTCAAACTG------ACGTTGTNAATATTTGATAGA----GGACATCGGAAATG
Reference ( gi|113891 ) : CGTCGCGCACG-----GTAAC---GTTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTCATGTA-----TTTCG----TGTCAATTA--TTTTACAAG-AAAATAGGCG-AATATCGGAATATTAATTACTGC-AATGGAATCAT-AAT--TTTCTGCGGATATTAA--CTGGATCAAAACCAATGATATCACTG-----TACCTAC--G---ATT-ACTATGAGA----ATACAGTATACCATGTACAT-----TAC-C-AGCGGCGTCCATAGGTTT-TCGTCGTATT-AAAAGAACGTCAAACTG------ACGATGTCAATACTTGATAGC----GGACATCGGAAATG
gi|113893 : CGTCGCGCACG-----GTAAT---GATACATCTAAACGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTAATGTA-----TTTCG----TATCATTTA--TTTTACAAG-AAAATAGCCG-AATACCGGAATATCAATTACTGC-AATGGAATCATGAAT--TTTCTACGGATATTAG--ATGAATCAAAACCAATGATATTACGG-----TACCTAC--G---TAA-ACTATGAGA----ATACAGTATACCA--TACAT-----AAC-T-AGCGGCGTCCATAGGTTT-TTGCCGTATTAAAAAGAGCGTCAAACTG------TCGTTGTAAATATTTGATAGA----GGACATCGGAAATG
gi|113892 : CGTCGCGCACG-----GTAAT---GGCACCTTTAAGCGTAACACGGCGTTAACGTTAAAATTG--TATAAAA------TAT-----AATT--TGA-CG-T--T-T----------T--TATTCATGTA-----TTTCG----TATCATTTA--TTTTACAAG-AAAAAAAACG-AATATCAGAATATCAAATACTGT-CACGGAATCAT-GAT--TTTCTGCGGATATTAA--ATGGATCAAAACCAATGATATCAATG-----TACCTAC--G---TTA-ACTATGAGA----ATACAGTATACCATGTACAT-----AAC-T-GGCGGCGTCCAC-CGTTT-TCACCGTATT-AAAAGAACGTCAAACTG------ACGCTGTCAATATGTGATAGA----GGACATCGGAAATG
gi|113896 : CGTCGCGCACG-----ATAAT---GGTACCTCTTAGCCTTACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTCATGTA-----TTTCG----TATCATTTA--TTTTACAAG-AAAATAGCCG-AATATCGGAATATTAATTACTGT-AATGGAATTAT-GAT--TTTCTGCGGATATTAA--ATGGGTCAAAATCAATG--------------TACGTA-------AT---CTATGAGA----ATACAGTATACCATGTACAG-----AAT-T-AGCAGCGTCCGTAGGTTT-TCGCCGTATT-AAAAAAACGTCAAACAG------GCGTTGTAAATATTTGATAGA----GGACATCGGAAAT
gi|113894 : CGTCGCGCACG-----GAAAT---GGTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--G-T----------T--TGTTCATGTT-----TTTCG----TATCATTTA--TTTTACACC-AAA-TAGACG-AATATCGGAATACCATTCACTGC-AATGGAATCAT-GAT--TTTCTGCGGATATAAA--ATGGATCAAAACCAATGATAGTACTG-----TACCTAC--G---TAA-ACTATGAGA----ATACAGTTTACCATGTACAT-----AAC-T-AGCGGTGTCCATAGGTTT-TCGCCGTATT-AGAAGAACGTCAAACTG------ACGTTGTAAATATTTAATAG
gi|113897 : CGTCGGGCACA-----GTAAT---GGTACCTCTAAGTGTAACA
gi|113898 : CGTCGCGCATT-----GTAAT---GGTACCATTAAGCGCAACACGACGTTAACGTTAAAATTG--CATAAAA------TGT-----AATA--TGC-TG-T--T-T----------T--TATCAATGTA-----TTTCG----GATCATTTA--TTTTACAAT-AAAATAGCCG-AATATTGGAATATCGGTTATTGC-AATGAAATCAT-GAT--TTTCTGCAGATATTAA--ATGTATCAAAATCAATGGTATTATTA-----TACCTAT--G---TAA-ACTATGAGAACCCATATAGTATACTATGTACAT-----AAA-T-AGCAGCGTCC--AGGTTT-TCGCGGTATT-AAAA-AACGCCAAA-TG----------TGTTAATATTTtttttattcatgtatttcgtatcatttattttacaagaaaatagctgaatattggaatatcaattactgcaatggaatcatgattttttgcagatatcagatggatcaaaaccaatgatattactgtaactacgttaactataagaatacaggataccatgtatgtaactaacggcgtccataggttttcaccgcattaaaagaacgtcaaattgacgatgtcagtatttgatagaggacatcggaaatg
gi|113899 : CGTCGCGCACG-----GTAA---------------GCGTTACACGACGGTAAAGTTAAAATGG--TATATAA------TGT-----AATA--TGA-CGCT--T-T----------T--TATTCATGTA-----TTTCG----TATCA-TTAATTTTTACAAG-AAAATAGCCG-AATATCTTAATATCGTTTACTGC-AATGGAATTAG-GAT--TTTCTGGGAATTTTAA--AAGTATCAAAACCAGTGAT---AGTA-----TACCTAC--G---TAA-ACTATAAGA----ATACAGTATACCATACACCT-----AAA-T-AGCGGCGTCCATAGGTTTATCGCCGTATT-AA---AACGTCAAACCG------ATGTTGCTAAGATTTGATAACTAGAGGACATCGGAAA
gi|113900 : CGTTGCGCACG-----GTAAT---GGTACATCTAAG------------TTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TAA-CG-T--T-T----------T--TATTCATGTA-----TTTCG----TATCATTTA--TTTTACAAG-AAAATAGCCG-AA-------------ATTACTGC-AATGGAATCAT-GAT--TTTCTGCGGATATTAA--ATGGATCAAAACCAATAATGTTACTG-----TACCTAC--G---GTA-ACTATGAGA----ATACAGTATACCATGCACAT-----
gi|113901 : CGTCGCATACG-----GTAAT---GGTAT---TAAGCGTAACGCGACATTAAC------ATTG--TATAAAA------CGT-----------TGA-CG-T--T-T----------TTTTATTCATGTA-----TTTCG----TATCATTTC--ATTTACAAG-AAAATAGTTG-AATATCAGAATACTGGTTACAGC-AATGGGATCAT-GATACTTTTT---GATATTAAATTTGTTTCAAAATCAATGATATTCTTC-----TATCTGC--G---TGA-ACTATTAGA----TTACATTATA-CATGTACA------TACAT-AACGGCGTTCATAAGTTA-TTGCCATATT-AAAACAACGTCAAATTC------GGGTTGTTAACATTTGATAGA----TGACATCAGAGATGaatt
gi|113902 : CGTCGCGCACG-----GTAAT---GGTACCTGTAAGCGGGACACGACGTTAACGTTAAAATTG--TTTAAA-------TGT-----AATA--TGA-AG-T--T-T----------T--TATTAATGTA-----T---G----TGTCATTTT--TTTAAAAAG-AAAATAGCCG-AATATCGGGAAATCGGTTACTGC-AATGGAAT----GAT--TTTCTGCGGAAATTAG--ATGGATCAAAACCAAAGGTATTACTG-----TAGCTTC--G---TAA-ACTATGAGA----ATACAGTATACCATGTA
gi|113903 : CGTCGTGCACT-----ATAAT---GGTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTA--TATTAAG------CGT-----------TGA-CT-TTAT-T----------T--TAGTCATGTATTGATTTTCG----TATAATTTA--ATTTACAAG-AAAACATCCG-GATATCGG--------TTACTTCAAAAGAAATCAT-ATT--AATTTGTGGA-AATAA--CTGTATTAAAAGCAATAATATTATTT-----TATCTAC--A---ATA-ATTATAGCA----ATTCATTATAGCTTGTACAT-----AAA-T-AGCGGCGTCtgtacatagc
gi|113906 : CGTCGCGCACG-----GTAAT---GGTACCTCTAAATGTAACATGGATTTAACGTTAAAATTG--TATAAAA------CGT-----------TGA-CG-T--aaactggtgttgttagtatttgatacaggacatcggagat
gi|113905 : CGTCGTGC-CG-----TTA-T---GATACTCCTAAGCCTAACACGACGTTAACGTTAAAATTG--TATAA
gi|113907 : CGTTGCGCA---------AACTATGGTACCTTTAAGCGTAACACTACGTTAATGTTA
gi|113904 : CGTCGCGCACG-----GTAAT---GGTACTTT----CGTAATAAAACATATACCCCAAA--TA--TATAAAACTGTTCTGT-----AATGATTGATCG-T--T-T----------T--T
gi|113895 : CGTCGCGCACC-----GTAAT---GGTACTT----GCGTTATAAAAC--TAATATCAGAAATA--TATAAAAC-----TGTTCCCGAATACTTGATCG-T--T-T----------T--T
gi|113908 : GTCGCGCACG-----GTAAT---GGTACTTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTCATATA-----TTTCG----TATCATTTA--TTTTACAAGAAAAATAGTCG-AATATCGG--------TTATGGC-ATGGGAAATAT-GAT--TTTCTGCGGATATTAA--ATGTATCAAAACCAATGATATTAGTAAAGGCTACCTAC--G---TAA-AATATGAGT----AAACAGTATACCATGTATAT-----AAA-T-AGCGGTGTCTATAGGATT-TTGCCGTATT-AAAACAATGTCAAACTG------ACGTTGTAAATATTTGATAGA----GGACATCGGAAATG
gi|113909 : GTCACGCACGCCGTGGTAAT---GGTACCTCTAAGCATAACACAACGCTAAAATTAAAATTATTTAAAAAA------TGT-----AATA--
gi|113910 : GTCGCGCACG-----GGAAT---GGTACCTCTAAGCGTAAC
gi|113911 : CACG-----GTAGT---GGTATCTCTAAGCGTAACACAATGGTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-TATTATTATTAT--TATTCATGTT-----TTTCA----TATCATTTA--TTTTACAAG-AAAATAGCCG-AATATCGTAATATCAATTACTGC-AATGGAATCAT-GAT--TTTCTGCGGATATTGA--ATGGATCAAAACCAATGATATTACTG-----TACCTA---G---GTTAACCATGAGA----ATACAGTATACCATGTACAT-----AAC-T-AGCGGCGTCCATAGGTTT-TCGCCGTATT-AAAAGAACGTCAGACTG------ACGATGTCAATATTTGATAGA----GGACATCGGAAATG
gi|113912 : CATAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----TGTA--TG------------------------TATGCACAGA-----TGTCACATTTATAAATTA--TTTT
gi|113913 : ATAAAA------CGT-----------TGA-CG-T--TATA---------T--TACTCATGTA-----TTTCG----TATCATCTA--ATT-AAAAG-AAAA-AACCGGAATAATAGAATATCGGTTACTGA-AATGGAATTAT-GAT--ACTTTGTAGATATTTA--ATGCATAAAAACCAATACTATTCTTC-----TATATAC--GTGAACT-ACTA---GA----ATGCATTATACCATATATAT-----AAA-T-AGCGGCATCAATAAATCC-TTGCCGTATT-TAAACAACGTCAAACTG------GCATTGTttttaca
gi|113897 : -----AGTG--TAA-CA-T--T-T----------T--TATTCATGTA-----TTTCG----TATCATTTA--TTTTACAAG-AAAATAGCTG-AATATTGGAATATCAATTACTGC-AATGGAATCAT-GAT--TTTTTGCAGATATCAG--ATGGATCAAAACCAATGATATTACTG-----TAACTAC--G---TTA-ACTATAAGA----ATACAGGATACCATGTATGT-----AAC-T-AACGGCGTCCATAGGTTT-TCACCGCATT-AAAAGAACGTCAAATTG------ACGATGTCAGTATTTGATAGA----GGACATCGGAAATG
gi|113914 : cgtcgggcacagtaatggtacctcta-T----------T--GATTCATGAA-----TTTTG----TATTATTTA--ATTTATAAG-AAAACAGCCG-AATATCGGAATATCAGTTATTTC-AATGGAGTTAT-GAT--ACTCTGTGGATATCAA--ATATATCAAATCCAATAATATTCTTC-----TATTTGC--G---TGA-ACTATTAGA----CTACAATATACCATTTACATGTAAATAA-AGAGCGGCATCGGTAAGTTT-TTAAAACATT-AAAACAACGTCAAACTG------A-GGTATAAATAATT
gi|113915 : G-AAGATCGAAA-ATCGGCTACTTC-AGTGGAATTGT-AAT--ACTTTGTGGATAATAA--ATGTATCAAAACCAATTATATTCTTA-----TACTAACATG---A---ACTATTAGA----ATGCATCATACCCTTTACA----------C-AA--------ATA---TA-TCGCCGTATA-AAAACAACGGCAATCTG------GTGTTGTTAATATTTGATAGA----GGATGTCGGAGATGt
gi|113916 : TATTACTG-----TACCTAC--G---TAA-ACTTTGAGA----ATACAGTATACCATGTACAT-----AAC-T-AGCGGCGTCCATAGGTTT-TTGCCGTAAT-AAAAGAACGTCAAACTG------ACGTTGTAAATATTTGGTAGA----GGACATCGGAAATG
gi|113917 : ATAGGTTT-TCGCCGTAAT-AAAAGAACGTCAAACTG------ACGTTGTAAATATTTGGTAGA----GGACATCGGAAATG
gi|113918 : ATT-AAAAGA-CGTCAAACTG------ACGTTGTAAATATTTGATAGA----GGACATCGGAAATG
gi|113919 : TT-AAAAGAACGTCAAACTGACGCATACGATGTCAATATTTGATAG
gi|113903 : CGTCAAACTG------GTGTTGTTAGTATTTGATACA----GGACATCGGAGAT
Alignments
lowQualScore : 1111111111
lowQualScore : 44444 22 888888 777777 55 4 2 22 2 1111111111 22 5555 444 55555 33 2 2 2 2 2 33 33 33 1 2 666666 1 4444 33 4 4444 2 2 2 666666 1 2 5555
lowQualScore : ..... .. ...... ...... .. . . .. . .......... .. .... ... ..... .. . . . . . .. .. .. . . ...... . .... .. . .... . . . ...... . . ....
lowQualScore : 88888 99 222222 111111 55 2 1 99 1 3333333333 99 0000 111 99999 22 4 5 4 4 4 22 22 22 0 3 666666 0 7777 11 3 7777 5 2 0 111111 0 2 3333
consensus : CGTCGCGCACG-----GTAATGGTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AATATCGGAATATCGGTTACTGC-AATGGAATCATG-AT--T--TTCTGCGGATATTAAA--TGNATCAAAACCAATGATATTACTG-----TACCTACGTNAACTATGAGA----ATACAGTATACCATGTACA--TAANT----AGCGGCGTCCATAGGTTT-TCGCCGTATT-AAAAGAACGTCAAACTGACGT------TGTNAAT-ATTTGA----TAGAGGACATCGGAAATG
Reference ( family-663 ) : CGTCGCGCACG-----GTAATGGTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AATATCGGAATATCGGTTACTGC-AATGGAATCATG-AT--T--TTCTGCGGATATTAAA--TGNATCAAAACCAATGATATTACTG-----TACCTACGTNAACTATGAGA----ATACAGTATACCATGTACA--TAACT----AGCGGCGTCCATAGGTTT-TCGCCGTATT-AAAAGAACGTCAAACTGACGT------TGTNAAT-ATTTGA----TAGAGGACATCGGAAATG
gi|113891 : CGTCGCGCACG-----GTAACGTTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--GTCAATTATTTT-ACAAG-AAAATAGGCG-AATATCGGAATATTAATTACTGC-AATGGAATCATA-AT--T--TTCTGCGGATATTAAC--TGGATCAAAACCAATGATATCACTG-----TACCTACGATTACTATGAGA----ATACAGTATACCATGTACA--TTACC----AGCGGCGTCCATAGGTTT-TCGTCGTATT-AAAAGAACGTCAAACTGACGA------TGTCAAT-ACTTGA----TAGCGGACATCGGAAATG
gi|113892 : CGTCGCGCACG-----GTAATGGCACCTTTAAGCGTAACACGGCGTTAACGTTAAAATTG--TATAAAA------TAT-----AATT--TGA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAAAAAACG-AATATCAGAATATCAAATACTGT-CACGGAATCATG-AT--T--TTCTGCGGATATTAAA--TGGATCAAAACCAATGATATCAATG-----TACCTACGTTAACTATGAGA----ATACAGTATACCATGTACA--TAACT----GGCGGCGTCCAC-CGTTT-TCACCGTATT-AAAAGAACGTCAAACTGACGC------TGTCAAT-ATGTGA----TAGAGGACATCGGAAATG
gi|113893 : CGTCGCGCACG-----GTAATGATACATCTAAACGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTA----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AATACCGGAATATCAATTACTGC-AATGGAATCATGAAT--T--TTCTACGGATATTAGA--TGAATCAAAACCAATGATATTACGG-----TACCTACGTAAACTATGAGA----ATACAGTATACCA--TACA--TAACT----AGCGGCGTCCATAGGTTT-TTGCCGTATTAAAAAGAGCGTCAAACTGTCGT------TGTAAAT-ATTTGA----TAGAGGACATCGGAAATG
gi|113894 : CGTCGCGCACG-----GAAATGGTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--G-T----------T--TGTTC----ATGT---T-----TTTCGT--ATCATTTATTTT-ACACC-AAA-TAGACG-AATATCGGAATACCATTCACTGC-AATGGAATCATG-AT--T--TTCTGCGGATATAAAA--TGGATCAAAACCAATGATAGTACTG-----TACCTACGTAAACTATGAGA----ATACAGTTTACCATGTACA--TAACT----AGCGGTGTCCATAGGTTT-TCGCCGTATT-AGAAGAACGTCAAACTGACGT------TGTAAAT-ATTTAA----TAG
gi|113895 : CGTCGCGCACC-----GTAATGGTACTT----GCGTTATAAAAC--TAATATCAGAAATA--TATAAAAC-----TGTTCCCGAATACTTGATCG-T--T-T----------T--T
gi|113896 : CGTCGCGCACG-----ATAATGGTACCTCTTAGCCTTACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AATATCGGAATATTAATTACTGT-AATGGAATTATG-AT--T--TTCTGCGGATATTAAA--TGGGTCAAAATCAATG------------------TACGTAATCTATGAGA----ATACAGTATACCATGTACA--GAATT----AGCAGCGTCCGTAGGTTT-TCGCCGTATT-AAAAAAACGTCAAACAGGCGT------TGTAAAT-ATTTGA----TAGAGGACATCGGAAAT
gi|113897 : CGTCGGGCACA-----GTAATGGTACCTCTAAGTGTAACA
gi|113897 : -----AGTG--TAA-CA-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCTG-AATATTGGAATATCAATTACTGC-AATGGAATCATG-AT--T--TTTTGCAGATATCAGA--TGGATCAAAACCAATGATATTACTG-----TAACTACGTTAACTATAAGA----ATACAGGATACCATGTATG--TAACT----AACGGCGTCCATAGGTTT-TCACCGCATT-AAAAGAACGTCAAATTGACGA------TGTCAGT-ATTTGA----TAGAGGACATCGGAAATGtttttattcatgtatttcgtatcatttattttacaagaaaatagctgaatattggaatatcaattactgcaatggaatcatgattttttgcagatatcagatggatcaaaaccaatgatattactgtaactacgttaactataagaatacaggataccatgtatgtaactaacggcgtccataggttttcaccgcattaaaagaacgtcaaattgacgatgtcagtatttgatagaggacatcggaaatg
gi|113898 : cgtcgggcacagtaatggtacctctaCGTCGCGCATT-----GTAATGGTACCATTAAGCGCAACACGACGTTAACGTTAAAATTG--CATAAAA------TGT-----AATA--TGC-TG-T--T-T----------T--TATCA----ATGT---A-----TTTCGG--ATCATTTATTTT-ACAAT-AAAATAGCCG-AATATTGGAATATCGGTTATTGC-AATGAAATCATG-AT--T--TTCTGCAGATATTAAA--TGTATCAAAATCAATGGTATTATTA-----TACCTATGTAAACTATGAGAACCCATATAGTATACTATGTACA--TAAAT----AGCAGCGTCC--AGGTTT-TCGCGGTATT-AAAA-AACGCCAAA-TG----------TGTTAAT-ATTT
gi|113899 : CGTCGCGCACG-----GTAA------------GCGTTACACGACGGTAAAGTTAAAATGG--TATATAA------TGT-----AATA--TGA-CGCT--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTAATTTTTACAAG-AAAATAGCCG-AATATCTTAATATCGTTTACTGC-AATGGAATTAGG-AT--T--TTCTGGGAATTTTAAA--AGTATCAAAACCAGTGATAGTA--------TACCTACGTAAACTATAAGA----ATACAGTATACCATACACC--TAAAT----AGCGGCGTCCATAGGTTTATCGCCGTATT-AA---AACGTCAAACCGATGT------TGCTAAG-ATTTGATAACTAGAGGACATCGGAAA
gi|113900 : CGTTGCGCACG-----GTAATGGTACATCTAAG------------TTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TAA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AA-------------ATTACTGC-AATGGAATCATG-AT--T--TTCTGCGGATATTAAA--TGGATCAAAACCAATAATGTTACTG-----TACCTACGGTAACTATGAGA----ATACAGTATACCATGCACA--TAATT----
gi|113901 : CGTCGCATACG-----GTAATGGTAT---TAAGCGTAACGCGACATTAAC------ATTG--TATAAAA------CGT-----------TGA-CG-T--T-T----------TTTTATTC----ATGT---A-----TTTCGT--ATCATTTCATTT-ACAAG-AAAATAGTTG-AATATCAGAATACTGGTTACAGC-AATGGGATCATG-ATACT--TTTT---GATATTAAATTTGTTTCAAAATCAATGATATTCTTC-----TATCTGCGTGAACTATTAGA----TTACATTATA-CATGTACA--TACAT----AACGGCGTTCATAAGTTA-TTGCCATATT-AAAACAACGTCAAATTCGGGT------TGTTAAC-ATTTGA----TAGATGACATCAGAGATG
gi|113902 : CGTCGCGCACG-----GTAATGGTACCTGTAAGCGGGACACGACGTTAACGTTAAAATTG--TTTAAA-------TGT-----AATA--TGA-AG-T--T-T----------T--TATTA----ATGT---A-----T---GT--GTCATTTTTTTA-AAAAG-AAAATAGCCG-AATATCGGGAAATCGGTTACTGC-AATGGAAT---G-AT--T--TTCTGCGGAAATTAGA--TGGATCAAAACCAAAGGTATTACTG-----TAGCTTCGTAAACTATGAGA----ATACAGTATACCATGTATG--TACAT----AGC
gi|113903 : CGTCGTGCACT-----ATAATGGTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTA--TATTAAG------CGT-----------TGA-CT-TTAT-T----------T--TAGTC----ATGT---ATTGATTTTCGT--ATAATTTAATTT-ACAAG-AAAACATCC---------GGATATCGGTTACTTCAAAAGAAATCAT--AT--TAATT-TGTGGA-AATAAC--TGTATTAAAAGCAATAATATTATTT-----TATCTACAATAATTATAGCA----ATTCATTATAGCTTGTACA--TAAAT----AGCGGCGTC
gi|113903 : CGTCAAACTGGTGT------TGTTAGT-ATTTGA----TACAGGACATCGGAGATaaactggtgttgttagtatttgatacaggacatcggagat
gi|113904 : cgtcgtgcactataatggtacctctaagcgtaacacgacgttaacgttaaaattatattaagcgttgactttattttagtcatgtattgattttcgtataatttaatttacaagaaaacatccggatatcggttacttcaaaagaaatcatattaatttgtggaaataactgtattaaaagcaataatattattttatctacaataattatagcaattcattatagcttgtacataaatagcggCGTCGCGCACG-----GTAATGGTACTTT----CGTAATAAAACATATACCCCAAA--TA--TATAAAACTGTTCTGT-----AATGATTGATCG-T--T-T----------T--T
gi|113905 : CGTCGTGC-CG-----TTA-TGATACTCCTAAGCCTAACACGACGTTAACGTTAAAATTG--TATAA
gi|113906 : CGTCGCGCACG-----GTAATGGTACCTCTAAATGTAACATGGATTTAACGTTAAAATTG--TATAAAA------CGT-----------TGA-CG-T--
gi|113907 : CGTTGCGCAAA-----CTA-TGGTACCTTTAAGCGTAACACTACGTTAATGTTA
gi|113908 : GTCGCGCACG-----GTAATGGTACTTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTC----ATAT---A-----TTTCGT--ATCATTTATTTT-ACAAGAAAAATAGTC---------GAATATCGGTTATGGC-ATGGGAAATATG-AT--T--TTCTGCGGATATTAAA--TGTATCAAAACCAATGATATTAGTAAAGGCTACCTACGTAAAATATGAGT----AAACAGTATACCATGTATA--TAAAT----AGCGGTGTCTATAGGATT-TTGCCGTATT-AAAACAATGTCAAACTGACGT------TGTAAAT-ATTTGA----TAGAGGACATCGGAAATG
gi|113909 : GTCACGCACGCCGTGGTAATGGTACCTCTAAGCATAACACAACGCTAAAATTAAAATTATTTAAAAAA------TGT-----AATA--
gi|113910 : GTCGCGCACG-----GGAATGGTACCTCTAAGCGTAAC
gi|113911 : CACG-----GTAGTGGTATCTCTAAGCGTAACACAATGGTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-TATTATTATTAT--TATTC----ATGT---T-----TTTCAT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AATATCGTAATATCAATTACTGC-AATGGAATCATG-AT--T--TTCTGCGGATATTGAA--TGGATCAAAACCAATGATATTACTG-----TACCTAGGTTAACCATGAGA----ATACAGTATACCATGTACA--TAACT----AGCGGCGTCCATAGGTTT-TCGCCGTATT-AAAAGAACGTCAGACTGACGA------TGTCAAT-ATTTGA----TAGAGGACATCGGAAATG
gi|113912 : CATAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----TGTA--TG------------------------TATGCACAGATGTCACA-----TTT-ATAAATTATTTTTTTT-ACA
gi|113913 : ATAAAA------CGT-----------TGA-CG-T--TATA---------T--TACTC----ATGT---A-----TTTCGT--ATCATCTAATT--AAAAG-AAAA-AACCGGAATAATAGAATATCGGTTACTGA-AATGGAATTATG-AT--A--CTTTGTAGATATTTAA--TGCATAAAAACCAATACTATTCTTC-----TATATACGTGAACTACTAGA----ATGCATTATACCATATATA--TAAAT----AGCGGCATCAATAAATCC-TTGCCGTATT-TAAACAACGTCAAACTGGCAT------TGT
gi|113914 : -T----------T--GATTC----ATGA---A-----TTTTGT--ATTATTTAATTT-ATAAG-AAAACAGCCG-AATATCGGAATATCAGTTATTTC-AATGGAGTTATG-AT--A--CTCTGTGGATATCAAA--TATATCAAATCCAATAATATTCTTC-----TATTTGCGTGAACTATTAGA----CTACAATATACCATTTACATGTAAATAAAGAGCGGCATCGGTAAGTTT-TTAAAACATT-AAAACAACGTCAAACTGA-GG------TATAAATAATTT
gi|113915 : G-AAGATCGAAA-ATCGGCTACTTC-AGTGGAATTGTA-AT--A--CTTTGTGGATAATAAA--TGTATCAAAACCAATTATATTCTTA-----TACTAACATGAACTATTAGA----ATGCATCATACCCTTTACA--CAAAT--------------ATA------TCGCCGTATA-AAAACAACGGCAATCTGGTGT------TGTTAAT-ATTTGA----TAGAGGATGTCGGAGATG
gi|113916 : TATTACTG-----TACCTACGTAAACTTTGAGA----ATACAGTATACCATGTACA--TAACT----AGCGGCGTCCATAGGTTT-TTGCCGTAAT-AAAAGAACGTCAAACTGACGT------TGTAAAT-ATTTGG----TAGAGGACATCGGAAATG
gi|113917 : ATAGGTTT-TCGCCGTAAT-AAAAGAACGTCAAACTGACGT------TGTAAAT-ATTTGG----TAGAGGACATCGGAAATG
gi|113918 : ATT-AAAAGA-CGTCAAACTGACGT------TGTAAAT-ATTTGA----TAGAGGACATCGGAAATG
gi|113919 : TT-AAAAGAACGTCAAACTGACGCATACGATGTCAAT-ATTTGA----TAG
Alignments
lowQualScore : 1111111111
lowQualScore : 44444 22 888888 777777 55 4 2 22 2 1111111111 22 5555 444 55555 33 2 2 2 2 2 33 33 33 1 2 666666 1 4444 33 1 4444 2 2 2 666666 1 2 5555
lowQualScore : ..... .. ...... ...... .. . . .. . .......... .. .... ... ..... .. . . . . . .. .. .. . . ...... . .... .. . .... . . . ...... . . ....
lowQualScore : 88888 99 222222 111111 55 2 1 99 1 3333333333 99 0000 111 99999 22 4 5 4 4 4 22 22 22 0 3 666666 0 7777 11 0 7777 5 2 0 111111 0 2 3333
consensus : CGTCGCGCACG-----GTAATGGTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AATATCGGAATATCGGTTACTGC-AATGGAATCATG-AT--T--TTCTGCGGATATTAAA--TGNATCAAAACCAATGATATTACTG-----TACCTACGTNAACTATGAGA----ATACAGTATACCATGTACA--TAANT----AGCGGCGTCCATAGGTTT-TCGCCGTATT-AAAAGAACGTCAAACTGACGT------TGTNAAT-ATTTGA----TAGAGGACATCGGAAATG
Reference ( family-663 ) : CGTCGCGCACG-----GTAATGGTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AATATCGGAATATCGGTTACTGC-AATGGAATCATG-AT--T--TTCTGCGGATATTAAA--TGNATCAAAACCAATGATATTACTG-----TACCTACGTNAACTATGAGA----ATACAGTATACCATGTACA--TAANT----AGCGGCGTCCATAGGTTT-TCGCCGTATT-AAAAGAACGTCAAACTGACGT------TGTNAAT-ATTTGA----TAGAGGACATCGGAAATG
gi|113891 : CGTCGCGCACG-----GTAACGTTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--GTCAATTATTTT-ACAAG-AAAATAGGCG-AATATCGGAATATTAATTACTGC-AATGGAATCATA-AT--T--TTCTGCGGATATTAAC--TGGATCAAAACCAATGATATCACTG-----TACCTACGATTACTATGAGA----ATACAGTATACCATGTACA--TTACC----AGCGGCGTCCATAGGTTT-TCGTCGTATT-AAAAGAACGTCAAACTGACGA------TGTCAAT-ACTTGA----TAGCGGACATCGGAAATG
gi|113892 : CGTCGCGCACG-----GTAATGGCACCTTTAAGCGTAACACGGCGTTAACGTTAAAATTG--TATAAAA------TAT-----AATT--TGA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAAAAAACG-AATATCAGAATATCAAATACTGT-CACGGAATCATG-AT--T--TTCTGCGGATATTAAA--TGGATCAAAACCAATGATATCAATG-----TACCTACGTTAACTATGAGA----ATACAGTATACCATGTACA--TAACT----GGCGGCGTCCAC-CGTTT-TCACCGTATT-AAAAGAACGTCAAACTGACGC------TGTCAAT-ATGTGA----TAGAGGACATCGGAAATG
gi|113893 : CGTCGCGCACG-----GTAATGATACATCTAAACGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTA----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AATACCGGAATATCAATTACTGC-AATGGAATCATGAAT--T--TTCTACGGATATTAGA--TGAATCAAAACCAATGATATTACGG-----TACCTACGTAAACTATGAGA----ATACAGTATACCA--TACA--TAACT----AGCGGCGTCCATAGGTTT-TTGCCGTATTAAAAAGAGCGTCAAACTGTCGT------TGTAAAT-ATTTGA----TAGAGGACATCGGAAATG
gi|113894 : CGTCGCGCACG-----GAAATGGTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--G-T----------T--TGTTC----ATGT---T-----TTTCGT--ATCATTTATTTT-ACACC-AAA-TAGACG-AATATCGGAATACCATTCACTGC-AATGGAATCATG-AT--T--TTCTGCGGATATAAAA--TGGATCAAAACCAATGATAGTACTG-----TACCTACGTAAACTATGAGA----ATACAGTTTACCATGTACA--TAACT----AGCGGTGTCCATAGGTTT-TCGCCGTATT-AGAAGAACGTCAAACTGACGT------TGTAAAT-ATTTAA----TAG
gi|113895 : CGTCGCGCACC-----GTAATGGTACTT----GCGTTATAAAAC--TAATATCAGAAATA--TATAAAAC-----TGTTCCCGAATACTTGATCG-T--T-T----------T--T
gi|113896 : CGTCGCGCACG-----ATAATGGTACCTCTTAGCCTTACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AATATCGGAATATTAATTACTGT-AATGGAATTATG-AT--T--TTCTGCGGATATTAAA--TGGGTCAAAATCAATG------------------TACGTAATCTATGAGA----ATACAGTATACCATGTACA--GAATT----AGCAGCGTCCGTAGGTTT-TCGCCGTATT-AAAAAAACGTCAAACAGGCGT------TGTAAAT-ATTTGA----TAGAGGACATCGGAAAT
gi|113897 : CGTCGGGCACA-----GTAATGGTACCTCTAAGTGTAACA
gi|113897 : -----AGTG--TAA-CA-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCTG-AATATTGGAATATCAATTACTGC-AATGGAATCATG-AT--T--TTTTGCAGATATCAGA--TGGATCAAAACCAATGATATTACTG-----TAACTACGTTAACTATAAGA----ATACAGGATACCATGTATG--TAACT----AACGGCGTCCATAGGTTT-TCACCGCATT-AAAAGAACGTCAAATTGACGA------TGTCAGT-ATTTGA----TAGAGGACATCGGAAATGtttttattcatgtatttcgtatcatttattttacaagaaaatagctgaatattggaatatcaattactgcaatggaatcatgattttttgcagatatcagatggatcaaaaccaatgatattactgtaactacgttaactataagaatacaggataccatgtatgtaactaacggcgtccataggttttcaccgcattaaaagaacgtcaaattgacgatgtcagtatttgatagaggacatcggaaatg
gi|113898 : cgtcgggcacagtaatggtacctctaCGTCGCGCATT-----GTAATGGTACCATTAAGCGCAACACGACGTTAACGTTAAAATTG--CATAAAA------TGT-----AATA--TGC-TG-T--T-T----------T--TATCA----ATGT---A-----TTTCGG--ATCATTTATTTT-ACAAT-AAAATAGCCG-AATATTGGAATATCGGTTATTGC-AATGAAATCATG-AT--T--TTCTGCAGATATTAAA--TGTATCAAAATCAATGGTATTATTA-----TACCTATGTAAACTATGAGAACCCATATAGTATACTATGTACA--TAAAT----AGCAGCGTCC--AGGTTT-TCGCGGTATT-AAAA-AACGCCAAA-TG----------TGTTAAT-ATTT
gi|113899 : CGTCGCGCACG-----GTAA------------GCGTTACACGACGGTAAAGTTAAAATGG--TATATAA------TGT-----AATA--TGA-CGCT--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTAATTTTTACAAG-AAAATAGCCG-AATATCTTAATATCGTTTACTGC-AATGGAATTAGG-AT--T--TTCTGGGAATTTTAAA--AGTATCAAAACCAGTGATAGTA--------TACCTACGTAAACTATAAGA----ATACAGTATACCATACACC--TAAAT----AGCGGCGTCCATAGGTTTATCGCCGTATT-AA---AACGTCAAACCGATGT------TGCTAAG-ATTTGATAACTAGAGGACATCGGAAA
gi|113900 : CGTTGCGCACG-----GTAATGGTACATCTAAG------------TTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TAA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AA-------------ATTACTGC-AATGGAATCATG-AT--T--TTCTGCGGATATTAAA--TGGATCAAAACCAATAATGTTACTG-----TACCTACGGTAACTATGAGA----ATACAGTATACCATGCACA--TAATT----
gi|113901 : CGTCGCATACG-----GTAATGGTAT---TAAGCGTAACGCGACATTAAC------ATTG--TATAAAA------CGT-----------TGA-CG-T--T-T----------TTTTATTC----ATGT---A-----TTTCGT--ATCATTTCATTT-ACAAG-AAAATAGTTG-AATATCAGAATACTGGTTACAGC-AATGGGATCATG-ATACT--TTTT---GATATTAAATTTGTTTCAAAATCAATGATATTCTTC-----TATCTGCGTGAACTATTAGA----TTACATTATA-CATGTACA--TACAT----AACGGCGTTCATAAGTTA-TTGCCATATT-AAAACAACGTCAAATTCGGGT------TGTTAAC-ATTTGA----TAGATGACATCAGAGATG
gi|113902 : CGTCGCGCACG-----GTAATGGTACCTGTAAGCGGGACACGACGTTAACGTTAAAATTG--TTTAAA-------TGT-----AATA--TGA-AG-T--T-T----------T--TATTA----ATGT---A-----T---GT--GTCATTTTTTTA-AAAAG-AAAATAGCCG-AATATCGGGAAATCGGTTACTGC-AATGGAAT---G-AT--T--TTCTGCGGAAATTAGA--TGGATCAAAACCAAAGGTATTACTG-----TAGCTTCGTAAACTATGAGA----ATACAGTATACCATGTATG--TACAT----AGC
gi|113903 : CGTCGTGCACT-----ATAATGGTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTA--TATTAAG------CGT-----------TGA-CT-TTAT-T----------T--TAGTC----ATGT---ATTGATTTTCGT--ATAATTTAATTT-ACAAG-AAAACATCC---------GGATATCGGTTACTTCAAAAGAAATCAT--AT--TAATT-TGTGGA-AATAAC--TGTATTAAAAGCAATAATATTATTT-----TATCTACAATAATTATAGCA----ATTCATTATAGCTTGTACA--TAAAT----AGCGGCGTC
gi|113903 : CGTCAAACTGGTGT------TGTTAGT-ATTTGA----TACAGGACATCGGAGATaaactggtgttgttagtatttgatacaggacatcggagat
gi|113904 : cgtcgtgcactataatggtacctctaagcgtaacacgacgttaacgttaaaattatattaagcgttgactttattttagtcatgtattgattttcgtataatttaatttacaagaaaacatccggatatcggttacttcaaaagaaatcatattaatttgtggaaataactgtattaaaagcaataatattattttatctacaataattatagcaattcattatagcttgtacataaatagcggCGTCGCGCACG-----GTAATGGTACTTT----CGTAATAAAACATATACCCCAAA--TA--TATAAAACTGTTCTGT-----AATGATTGATCG-T--T-T----------T--T
gi|113905 : CGTCGTGC-CG-----TTA-TGATACTCCTAAGCCTAACACGACGTTAACGTTAAAATTG--TATAA
gi|113906 : CGTCGCGCACG-----GTAATGGTACCTCTAAATGTAACATGGATTTAACGTTAAAATTG--TATAAAA------CGT-----------TGA-CG-T--
gi|113907 : CGTTGCGCAAA-----CTA-TGGTACCTTTAAGCGTAACACTACGTTAATGTTA
gi|113908 : GTCGCGCACG-----GTAATGGTACTTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTC----ATAT---A-----TTTCGT--ATCATTTATTTT-ACAAGAAAAATAGTC---------GAATATCGGTTATGGC-ATGGGAAATATG-AT--T--TTCTGCGGATATTAAA--TGTATCAAAACCAATGATATTAGTAAAGGCTACCTACGTAAAATATGAGT----AAACAGTATACCATGTATA--TAAAT----AGCGGTGTCTATAGGATT-TTGCCGTATT-AAAACAATGTCAAACTGACGT------TGTAAAT-ATTTGA----TAGAGGACATCGGAAATG
gi|113909 : GTCACGCACGCCGTGGTAATGGTACCTCTAAGCATAACACAACGCTAAAATTAAAATTATTTAAAAAA------TGT-----AATA--
gi|113910 : GTCGCGCACG-----GGAATGGTACCTCTAAGCGTAAC
gi|113911 : CACG-----GTAGTGGTATCTCTAAGCGTAACACAATGGTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-TATTATTATTAT--TATTC----ATGT---T-----TTTCAT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AATATCGTAATATCAATTACTGC-AATGGAATCATG-AT--T--TTCTGCGGATATTGAA--TGGATCAAAACCAATGATATTACTG-----TACCTAGGTTAACCATGAGA----ATACAGTATACCATGTACA--TAACT----AGCGGCGTCCATAGGTTT-TCGCCGTATT-AAAAGAACGTCAGACTGACGA------TGTCAAT-ATTTGA----TAGAGGACATCGGAAATG
gi|113912 : CATAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----TGTA--TG------------------------TATGCACAGATGTCACA-----TTT-ATAAATTATTTTTTTT-ACA
gi|113913 : ATAAAA------CGT-----------TGA-CG-T--TATA---------T--TACTC----ATGT---A-----TTTCGT--ATCATCTAATT--AAAAG-AAAA-AACCGGAATAATAGAATATCGGTTACTGA-AATGGAATTATG-AT--A--CTTTGTAGATATTTAA--TGCATAAAAACCAATACTATTCTTC-----TATATACGTGAACTACTAGA----ATGCATTATACCATATATA--TAAAT----AGCGGCATCAATAAATCC-TTGCCGTATT-TAAACAACGTCAAACTGGCAT------TGT
gi|113914 : -T----------T--GATTC----ATGA---A-----TTTTGT--ATTATTTAATTT-ATAAG-AAAACAGCCG-AATATCGGAATATCAGTTATTTC-AATGGAGTTATG-AT--A--CTCTGTGGATATCAAA--TATATCAAATCCAATAATATTCTTC-----TATTTGCGTGAACTATTAGA----CTACAATATACCATTTACATGTAAATAAAGAGCGGCATCGGTAAGTTT-TTAAAACATT-AAAACAACGTCAAACTGA-GG------TATAAATAATTT
gi|113915 : G-AAGATCGAAA-ATCGGCTACTTC-AGTGGAATTGTA-AT--A--CTTTGTGGATAATAAA--TGTATCAAAACCAATTATATTCTTA-----TACTAACATGAACTATTAGA----ATGCATCATACCCTTTACA--CAAAT--------------ATA------TCGCCGTATA-AAAACAACGGCAATCTGGTGT------TGTTAAT-ATTTGA----TAGAGGATGTCGGAGATG
gi|113916 : TATTACTG-----TACCTACGTAAACTTTGAGA----ATACAGTATACCATGTACA--TAACT----AGCGGCGTCCATAGGTTT-TTGCCGTAAT-AAAAGAACGTCAAACTGACGT------TGTAAAT-ATTTGG----TAGAGGACATCGGAAATG
gi|113917 : ATAGGTTT-TCGCCGTAAT-AAAAGAACGTCAAACTGACGT------TGTAAAT-ATTTGG----TAGAGGACATCGGAAATG
gi|113918 : ATT-AAAAGA-CGTCAAACTGACGT------TGTAAAT-ATTTGA----TAGAGGACATCGGAAATG
gi|113919 : TT-AAAAGAACGTCAAACTGACGCATACGATGTCAAT-ATTTGA----TAG
blockSeqs : CCGTG TT CTGTTC TCCCGA CT T C TA A ATTATTATTA TT ACAG CAC TTGAT AA T A G A A AC AA TT G A AAAGGC T ACCC TG C AAAG A A G ATACGA C A TAAC
blockSeqs : . . C A AT T . . . A . . . . . . . . . . . . . A C G A . . C . . . G . A . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . G C G A . . C . . . G . A . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . G C G A . . T . . . A . A . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . G T G T . . C . . . G . C . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . T C A A . . A . . . C . T . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . T T G A . . A . . . C . T . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . G C C T . . T . . . G . T . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . T T G G . . A . . . C . T . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . G G T A . . A . . . C . A . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . T C G T . . A . . . C . C . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . T T C A . . A . . . G . A . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . G T C T . . C . . . G . T . .
blockSeqs : . . . A . . . . . . . . . . . . . . . . . . . C T A G . . A . . . G . A . .
blockSeqs : . . . T . . . . . . . . . . . . . . . . . . . T C G G . . A . . . G . A . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . T . . G . . A . . . . A .
blockSeqs : . . . . . . . . . . . . . A . . C . . . . C .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . .
blockSeqs : .
blockSeqCons :
originalCons : CGTCGCGCACG-----GTAATGGTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AATATCGGAATATCGGTTACTGC-AATGGAATCATG-AT--T--TTCTGCGGATATTAAA--TGNATCAAAACCAATGATATTACTG-----TACCTACGTNAACTATGAGA----ATACAGTATACCATGTACA--TAANT----AGCGGCGTCCATAGGTTT-TCGCCGTATT-AAAAGAACGTCAAACTGACGT------TGTNAAT-ATTTGA----TAGAGGACATCGGAAATG
finalCons : CGTCGCGCACG-----GTAATGGTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AATATCGGAATATCGGTTACTGC-AATGGAATCATG-AT--T--TTCTGCGGATATTAAA--TGNATCAAAACCAATGATATTACTG-----TACCTACGTNAACTATGAGA----ATACAGTATACCATGTACA--TAANT----AGCGGCGTCCATAGGTTT-TCGCCGTATT-AAAAGAACGTCAAACTGACGT------TGTNAAT-ATTTGA----TAGAGGACATCGGAAATG
Alignments
lowQualScore : 1111111111
lowQualScore : 44444 22 888888 777777 55 4 2 22 2 1111111111 22 5555 444 55555 33 2 2 2 2 2 33 33 33 1 2 666666 1 4444 33 1 4444 2 2 2 666666 1 2 5555
lowQualScore : ..... .. ...... ...... .. . . .. . .......... .. .... ... ..... .. . . . . . .. .. .. . . ...... . .... .. . .... . . . ...... . . ....
lowQualScore : 88888 99 222222 111111 55 2 1 99 1 3333333333 99 0000 111 99999 22 4 5 4 4 4 22 22 22 0 3 666666 0 7777 11 0 7777 5 2 0 111111 0 2 3333
consensus : CGTCGCGCACG-----GTAATGGTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AATATCGGAATATCGGTTACTGC-AATGGAATCATG-AT--T--TTCTGCGGATATTAAA--TGNATCAAAACCAATGATATTACTG-----TACCTACGTNAACTATGAGA----ATACAGTATACCATGTACA--TAANT----AGCGGCGTCCATAGGTTT-TCGCCGTATT-AAAAGAACGTCAAACTGACGT------TGTNAAT-ATTTGA----TAGAGGACATCGGAAATG
Reference ( family-663 ) : CGTCGCGCACG-----GTAATGGTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AATATCGGAATATCGGTTACTGC-AATGGAATCATG-AT--T--TTCTGCGGATATTAAA--TGNATCAAAACCAATGATATTACTG-----TACCTACGTNAACTATGAGA----ATACAGTATACCATGTACA--TAANT----AGCGGCGTCCATAGGTTT-TCGCCGTATT-AAAAGAACGTCAAACTGACGT------TGTNAAT-ATTTGA----TAGAGGACATCGGAAATG
gi|113891 : CGTCGCGCACG-----GTAACGTTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--GTCAATTATTTT-ACAAG-AAAATAGGCG-AATATCGGAATATTAATTACTGC-AATGGAATCATA-AT--T--TTCTGCGGATATTAAC--TGGATCAAAACCAATGATATCACTG-----TACCTACGATTACTATGAGA----ATACAGTATACCATGTACA--TTACC----AGCGGCGTCCATAGGTTT-TCGTCGTATT-AAAAGAACGTCAAACTGACGA------TGTCAAT-ACTTGA----TAGCGGACATCGGAAATG
gi|113892 : CGTCGCGCACG-----GTAATGGCACCTTTAAGCGTAACACGGCGTTAACGTTAAAATTG--TATAAAA------TAT-----AATT--TGA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAAAAAACG-AATATCAGAATATCAAATACTGT-CACGGAATCATG-AT--T--TTCTGCGGATATTAAA--TGGATCAAAACCAATGATATCAATG-----TACCTACGTTAACTATGAGA----ATACAGTATACCATGTACA--TAACT----GGCGGCGTCCAC-CGTTT-TCACCGTATT-AAAAGAACGTCAAACTGACGC------TGTCAAT-ATGTGA----TAGAGGACATCGGAAATG
gi|113893 : CGTCGCGCACG-----GTAATGATACATCTAAACGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTA----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AATACCGGAATATCAATTACTGC-AATGGAATCATGAAT--T--TTCTACGGATATTAGA--TGAATCAAAACCAATGATATTACGG-----TACCTACGTAAACTATGAGA----ATACAGTATACCA--TACA--TAACT----AGCGGCGTCCATAGGTTT-TTGCCGTATTAAAAAGAGCGTCAAACTGTCGT------TGTAAAT-ATTTGA----TAGAGGACATCGGAAATG
gi|113894 : CGTCGCGCACG-----GAAATGGTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--G-T----------T--TGTTC----ATGT---T-----TTTCGT--ATCATTTATTTT-ACACC-AAA-TAGACG-AATATCGGAATACCATTCACTGC-AATGGAATCATG-AT--T--TTCTGCGGATATAAAA--TGGATCAAAACCAATGATAGTACTG-----TACCTACGTAAACTATGAGA----ATACAGTTTACCATGTACA--TAACT----AGCGGTGTCCATAGGTTT-TCGCCGTATT-AGAAGAACGTCAAACTGACGT------TGTAAAT-ATTTAA----TAG
gi|113895 : CGTCGCGCACC-----GTAATGGTACTT----GCGTTATAAAAC--TAATATCAGAAATA--TATAAAAC-----TGTTCCCGAATACTTGATCG-T--T-T----------T--T
gi|113896 : CGTCGCGCACG-----ATAATGGTACCTCTTAGCCTTACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AATATCGGAATATTAATTACTGT-AATGGAATTATG-AT--T--TTCTGCGGATATTAAA--TGGGTCAAAATCAATG------------------TACGTAATCTATGAGA----ATACAGTATACCATGTACA--GAATT----AGCAGCGTCCGTAGGTTT-TCGCCGTATT-AAAAAAACGTCAAACAGGCGT------TGTAAAT-ATTTGA----TAGAGGACATCGGAAAT
gi|113897 : CGTCGGGCACA-----GTAATGGTACCTCTAAGTGTAACA
gi|113897 : -----AGTG--TAA-CA-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCTG-AATATTGGAATATCAATTACTGC-AATGGAATCATG-AT--T--TTTTGCAGATATCAGA--TGGATCAAAACCAATGATATTACTG-----TAACTACGTTAACTATAAGA----ATACAGGATACCATGTATG--TAACT----AACGGCGTCCATAGGTTT-TCACCGCATT-AAAAGAACGTCAAATTGACGA------TGTCAGT-ATTTGA----TAGAGGACATCGGAAATGtttttattcatgtatttcgtatcatttattttacaagaaaatagctgaatattggaatatcaattactgcaatggaatcatgattttttgcagatatcagatggatcaaaaccaatgatattactgtaactacgttaactataagaatacaggataccatgtatgtaactaacggcgtccataggttttcaccgcattaaaagaacgtcaaattgacgatgtcagtatttgatagaggacatcggaaatg
gi|113898 : cgtcgggcacagtaatggtacctctaCGTCGCGCATT-----GTAATGGTACCATTAAGCGCAACACGACGTTAACGTTAAAATTG--CATAAAA------TGT-----AATA--TGC-TG-T--T-T----------T--TATCA----ATGT---A-----TTTCGG--ATCATTTATTTT-ACAAT-AAAATAGCCG-AATATTGGAATATCGGTTATTGC-AATGAAATCATG-AT--T--TTCTGCAGATATTAAA--TGTATCAAAATCAATGGTATTATTA-----TACCTATGTAAACTATGAGAACCCATATAGTATACTATGTACA--TAAAT----AGCAGCGTCC--AGGTTT-TCGCGGTATT-AAAA-AACGCCAAA-TG----------TGTTAAT-ATTT
gi|113899 : CGTCGCGCACG-----GTAA------------GCGTTACACGACGGTAAAGTTAAAATGG--TATATAA------TGT-----AATA--TGA-CGCT--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTAATTTTTACAAG-AAAATAGCCG-AATATCTTAATATCGTTTACTGC-AATGGAATTAGG-AT--T--TTCTGGGAATTTTAAA--AGTATCAAAACCAGTGATAGTA--------TACCTACGTAAACTATAAGA----ATACAGTATACCATACACC--TAAAT----AGCGGCGTCCATAGGTTTATCGCCGTATT-AA---AACGTCAAACCGATGT------TGCTAAG-ATTTGATAACTAGAGGACATCGGAAA
gi|113900 : CGTTGCGCACG-----GTAATGGTACATCTAAG------------TTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TAA-CG-T--T-T----------T--TATTC----ATGT---A-----TTTCGT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AA-------------ATTACTGC-AATGGAATCATG-AT--T--TTCTGCGGATATTAAA--TGGATCAAAACCAATAATGTTACTG-----TACCTACGGTAACTATGAGA----ATACAGTATACCATGCACA--TAATT----
gi|113901 : CGTCGCATACG-----GTAATGGTAT---TAAGCGTAACGCGACATTAAC------ATTG--TATAAAA------CGT-----------TGA-CG-T--T-T----------TTTTATTC----ATGT---A-----TTTCGT--ATCATTTCATTT-ACAAG-AAAATAGTTG-AATATCAGAATACTGGTTACAGC-AATGGGATCATG-ATACT--TTTT---GATATTAAATTTGTTTCAAAATCAATGATATTCTTC-----TATCTGCGTGAACTATTAGA----TTACATTATA-CATGTACA--TACAT----AACGGCGTTCATAAGTTA-TTGCCATATT-AAAACAACGTCAAATTCGGGT------TGTTAAC-ATTTGA----TAGATGACATCAGAGATG
gi|113902 : CGTCGCGCACG-----GTAATGGTACCTGTAAGCGGGACACGACGTTAACGTTAAAATTG--TTTAAA-------TGT-----AATA--TGA-AG-T--T-T----------T--TATTA----ATGT---A-----T---GT--GTCATTTTTTTA-AAAAG-AAAATAGCCG-AATATCGGGAAATCGGTTACTGC-AATGGAAT---G-AT--T--TTCTGCGGAAATTAGA--TGGATCAAAACCAAAGGTATTACTG-----TAGCTTCGTAAACTATGAGA----ATACAGTATACCATGTATG--TACAT----AGC
gi|113903 : CGTCGTGCACT-----ATAATGGTACCTCTAAGCGTAACACGACGTTAACGTTAAAATTA--TATTAAG------CGT-----------TGA-CT-TTAT-T----------T--TAGTC----ATGT---ATTGATTTTCGT--ATAATTTAATTT-ACAAG-AAAACATCC---------GGATATCGGTTACTTCAAAAGAAATCAT--AT--TAATT-TGTGGA-AATAAC--TGTATTAAAAGCAATAATATTATTT-----TATCTACAATAATTATAGCA----ATTCATTATAGCTTGTACA--TAAAT----AGCGGCGTC
gi|113903 : CGTCAAACTGGTGT------TGTTAGT-ATTTGA----TACAGGACATCGGAGATaaactggtgttgttagtatttgatacaggacatcggagat
gi|113904 : cgtcgtgcactataatggtacctctaagcgtaacacgacgttaacgttaaaattatattaagcgttgactttattttagtcatgtattgattttcgtataatttaatttacaagaaaacatccggatatcggttacttcaaaagaaatcatattaatttgtggaaataactgtattaaaagcaataatattattttatctacaataattatagcaattcattatagcttgtacataaatagcggCGTCGCGCACG-----GTAATGGTACTTT----CGTAATAAAACATATACCCCAAA--TA--TATAAAACTGTTCTGT-----AATGATTGATCG-T--T-T----------T--T
gi|113905 : CGTCGTGC-CG-----TTA-TGATACTCCTAAGCCTAACACGACGTTAACGTTAAAATTG--TATAA
gi|113906 : CGTCGCGCACG-----GTAATGGTACCTCTAAATGTAACATGGATTTAACGTTAAAATTG--TATAAAA------CGT-----------TGA-CG-T--
gi|113907 : CGTTGCGCAAA-----CTA-TGGTACCTTTAAGCGTAACACTACGTTAATGTTA
gi|113908 : GTCGCGCACG-----GTAATGGTACTTCTAAGCGTAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-T----------T--TATTC----ATAT---A-----TTTCGT--ATCATTTATTTT-ACAAGAAAAATAGTC---------GAATATCGGTTATGGC-ATGGGAAATATG-AT--T--TTCTGCGGATATTAAA--TGTATCAAAACCAATGATATTAGTAAAGGCTACCTACGTAAAATATGAGT----AAACAGTATACCATGTATA--TAAAT----AGCGGTGTCTATAGGATT-TTGCCGTATT-AAAACAATGTCAAACTGACGT------TGTAAAT-ATTTGA----TAGAGGACATCGGAAATG
gi|113909 : GTCACGCACGCCGTGGTAATGGTACCTCTAAGCATAACACAACGCTAAAATTAAAATTATTTAAAAAA------TGT-----AATA--
gi|113910 : GTCGCGCACG-----GGAATGGTACCTCTAAGCGTAAC
gi|113911 : CACG-----GTAGTGGTATCTCTAAGCGTAACACAATGGTAACGTTAAAATTG--TATAAAA------TGT-----AATA--TGA-CG-T--T-TATTATTATTAT--TATTC----ATGT---T-----TTTCAT--ATCATTTATTTT-ACAAG-AAAATAGCCG-AATATCGTAATATCAATTACTGC-AATGGAATCATG-AT--T--TTCTGCGGATATTGAA--TGGATCAAAACCAATGATATTACTG-----TACCTAGGTTAACCATGAGA----ATACAGTATACCATGTACA--TAACT----AGCGGCGTCCATAGGTTT-TCGCCGTATT-AAAAGAACGTCAGACTGACGA------TGTCAAT-ATTTGA----TAGAGGACATCGGAAATG
gi|113912 : CATAACACGACGTTAACGTTAAAATTG--TATAAAA------TGT-----TGTA--TG------------------------TATGCACAGATGTCACA-----TTT-ATAAATTATTTTTTTT-ACA
gi|113913 : ATAAAA------CGT-----------TGA-CG-T--TATA---------T--TACTC----ATGT---A-----TTTCGT--ATCATCTAATT--AAAAG-AAAA-AACCGGAATAATAGAATATCGGTTACTGA-AATGGAATTATG-AT--A--CTTTGTAGATATTTAA--TGCATAAAAACCAATACTATTCTTC-----TATATACGTGAACTACTAGA----ATGCATTATACCATATATA--TAAAT----AGCGGCATCAATAAATCC-TTGCCGTATT-TAAACAACGTCAAACTGGCAT------TGT
gi|113914 : -T----------T--GATTC----ATGA---A-----TTTTGT--ATTATTTAATTT-ATAAG-AAAACAGCCG-AATATCGGAATATCAGTTATTTC-AATGGAGTTATG-AT--A--CTCTGTGGATATCAAA--TATATCAAATCCAATAATATTCTTC-----TATTTGCGTGAACTATTAGA----CTACAATATACCATTTACATGTAAATAAAGAGCGGCATCGGTAAGTTT-TTAAAACATT-AAAACAACGTCAAACTGA-GG------TATAAATAATTT
gi|113915 : G-AAGATCGAAA-ATCGGCTACTTC-AGTGGAATTGTA-AT--A--CTTTGTGGATAATAAA--TGTATCAAAACCAATTATATTCTTA-----TACTAACATGAACTATTAGA----ATGCATCATACCCTTTACA--CAAAT--------------ATA------TCGCCGTATA-AAAACAACGGCAATCTGGTGT------TGTTAAT-ATTTGA----TAGAGGATGTCGGAGATG
gi|113916 : TATTACTG-----TACCTACGTAAACTTTGAGA----ATACAGTATACCATGTACA--TAACT----AGCGGCGTCCATAGGTTT-TTGCCGTAAT-AAAAGAACGTCAAACTGACGT------TGTAAAT-ATTTGG----TAGAGGACATCGGAAATG
gi|113917 : ATAGGTTT-TCGCCGTAAT-AAAAGAACGTCAAACTGACGT------TGTAAAT-ATTTGG----TAGAGGACATCGGAAATG
gi|113918 : ATT-AAAAGA-CGTCAAACTGACGT------TGTAAAT-ATTTGA----TAGAGGACATCGGAAATG
gi|113919 : TT-AAAAGAACGTCAAACTGACGCATACGATGTCAAT-ATTTGA----TAG