lowQualScore                  :                                                               1                                                                                  
lowQualScore                  :                                                               2 1                555                             88  1             9             
lowQualScore                  :                                                               . .                ...                             ..  .             .             
lowQualScore                  :                                                               5 4                666                             11  4             2             
consensus                     :                          TGCACCGTTACAGGGCAGTGAGATAGATAGATCCAGACC-GTAGAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATAGATCCAGACCGTAGAAATGGTC
Reference ( gi|42915 )        :                          TGCACCGTTACAGGGCAGTGAGATAGATAGATCCAGAAC-GTAGAAATGGTCTTCG---TTACCACTATGCACCGTTACAGGGCAGTGAAAT-AGATAGATCCAGAACGTAGAAATGGTC
gi|42920                      :                          TGCACCGTTACAGGGCAGTGAGATAGATAGATTTAGAAC-GTAGAAATGGTCTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGAT-AGATAGATCCAGAACGTAGAAATGGTC
gi|42916                      :                          TGCACCGTTACAGGGCAGTGAAATAGATAGATCCAGAAC-GTAGAAATGGTCTTCG---TTACCACTATGCACCGTTACAGGGCAGTGAAAC-AAATAGATCCAGACTGTAGAAATGGTC
gi|42922                      :                          TGCGTCGTTACAGGGCAGTGAGATAGATAGATTCAGAAC-GTAGAAATGGTCTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGAT-AGATAGATCCAGAACGTAGAAATGGTC
gi|42914                      :                          TGCACCGTTACAGGGTAGTGAGATAGATAGATCCAGACT-ATAGAAATGGTCTTCG---TTACCACTATGCACCGTTACAGAGCAGTGAGAT-AGATAGATCCAGACTGTAGAAATGGTC
gi|42926                      :                          TGCACCGTTACAGGGCAGTGAGATAGCTAGATTCAGACC-GTAGAAATGGCATTCG---TTACCACTATGCGCCGTTACAGGGCAGTGAGAT-AGATAGATTCAGAACGTAGAAATGGTC
gi|42921                      :                          TGCGTCGTTACAGGGCAGTGAGATAGATAGATTCAGAAC-GTAGAAATGGTCTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAGACTGTAGAAATGGTC
gi|42919                      :                          TGCGCCGTTACAGGGCAGTGAGATAGATAGATTCAGAAC-GTAGAAATGGTCTTCG---TTATCACTTTGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAGACTGTAGAAATGGTC
gi|42918                      :                          TGCACCGTTACAGAGCAGTGAGATAGATAGATCCAGACT-GTAGAAATGGTCTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGGT-AGATAGATCTAGACCGTAGAAATGGT
gi|42931                      :                          TGCACCGTTACAGGGCAGTGAGAT----AGATCCAGACT-GTAGAAATGGTCTTCG---TTACCACTATGCGTCGTTACAGGGCAGTGAGAT-AGATAGATTCAGAACGTAGAAATGGTC
gi|42924                      :                          TGCACCGTTACAGGGCAGTGAGATAGATAGATCCAGAAC-GTAGAAATGGTCCTCG---TTACCATTATGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAT-CCGTACAAATGGTC
gi|42927                      :                          TGCACCGTTACAGGGCAGTGAGAT----AGATCCAGACC-GTAGAAATGGTCCTCG---ATACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATAGATTTAGAACGTAGAAATGGTC
gi|42925                      :                          TGCACCGTTACAGGGCAGTGAGGTAGATAGATCTAGACC-GTAGAAATGGTTTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGAT-AGCTAGATTCAGACCGTAGAAATGG
gi|42928                      :                          TGCACCGTTACAGGGCAGTGAGATAGATATATCCAGACT-GTAGAAATGGTCTTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAT-CCGTACAAATGGTC
gi|42934                      :                          TGCAACGTTACAGGGCAGTGAGAT----AGATCCAGACC-GTAGAAATGGTCCTCG---ATACCACTATGCGTCGTTACAGGGCAGTGAGAT-AGATAGATTCAGAACGTAGAAATGGTC
gi|42923                      :                          TGCACCGTTACAGGGCAGTGAGATAGATATATCCAGACT-GTAGAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAT-CCGTACAAATGGTC
gi|42917                      :                          TGCACCGTTACAGGGCAGTGAGATAGATAGATATATACT-GTAGAAATGGTCCTCG---TTACCACTATGCACCGTTTTAGGACAGTGAGAT-AGATAGATCCAGACTGTAGAAATGGTC
gi|42933                      :                          TGCACCGTTACAGGGCAGTGAGATAGATATATCCATC-C-GTACAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTG-----AGATAGATCCAGACCGTAGAAATGGTC
gi|42932                      :                          TGCACCGTTACAGGGCAGTGAGATAGATATATCCATC-C-GTACAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTG-----AGATAGATCCAGACCGTAGAAATGGTC
gi|42930                      :                          TGCACCGTTACAGGGCAGTGAAACAAATAGATCCAGACT-GTAGAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAT-CCGTACAAATGGTC
gi|42929                      :                          TGCACCGTTACAGGGCAGTGAGATAGATATATCCATC-C-GTACAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTG-----AGATAGATCCAGACTGTAGAAATGGTC
gi|42935                      :                          TGCACCGTTACAGGGCAGTGAGATAGATATATCCATC-C-GTACAAATGGTCCTCG---TTACCACTATGCAACGTTACAGGGCAGTG-----AGATAGATCCAGACCGTAGAAATGGTC
gi|42936                      :                          TGCACCGTTACAGGGCAGTGAGAT----AGATCCAGACC-GTAGAAATGGTCCTCG---ATACCACTATGCGCCGTTACAGGGCAGTGCGAT-AGATAGATC
gi|42941                      :                          TGCACCGTTACAGGGTAGTGAGATAGATAGATCCAGACT-ATAGAAATGGTC
gi|42942                      : gtagaaatggtcctcgttaccacttTGCACCGTTACAGGGCAGTGAGATAGATAGATATATACT-GTAGAAATGGTC
gi|42937                      :                         aTGCGCCGTTACAGGGCAGTGCGATAGATAGATC
gi|42938                      :                                GTCACAGGGCAGTGAGATGGACAGATCTAGTCA-GTAGAAAT
gi|42939                      :                                            TAAGACAGACAGGCGCTAAACTATAGAAACGGTCATCGCACTCCCCATTATGGACCGTTACATAGCATTGAGAC--GATAG
gi|42940                      :                                                            AGACT-GTAGAAATGGTCCTCAATCTCCCCACTATGGACCATTACAATACACAGAGGTAAGATAG
gi|42941                      :                                                                 -GTAGAAATGGTCCTCG---TTACCACTTTGCACCGTTACAGGGTAGTGAGAT-AGATAGATCCAGACTATAGAAATGGTC
gi|42942                      :                                                                                             ATGCACCGTTACAGGGCAGTGAGAT-AGATAGATATATACTGTAGAAATGGTC
gi|42936                      :                                                                                              TGCACCGTTACAGGGCAGTG-----AGATAGATCCAGACCGTAGAAATGGTC
gi|42937                      :                                                                                              TGCGCCGTTACAGGGCAGTGCGAT-AGATAGATCctcgataccactatgcgccgttacagggcagtgcgatagatagatc
gi|42938                      :                                                                                                    GTCACAGGGCAGTGAGAT-GGACAGATCTAGTCAGTAGAAAT

lowQualScore                  :                                 1                       555                                 1                           
lowQualScore                  :                                 .                       ...                                 .                           
lowQualScore                  :                                 5                       444                                 5                           
consensus                     : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-CCAGACCGTAGAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATAGATCCAGACCGTAGAAATGGTC
Reference ( family-660 )      : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-CCAGACCGTAGAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATAGATCCAGACCGTAGAAATGGTC
gi|42914                      : TGCACCGTTACAGGGTAGTGAGATAGATAGAT-CCAGACTATAGAAATGGTCTTCG---TTACCACTATGCACCGTTACAGAGCAGTGAGAT-AGATAGATCCAGACTGTAGAAATGGTC
gi|42915                      : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-CCAGAACGTAGAAATGGTCTTCG---TTACCACTATGCACCGTTACAGGGCAGTGAAAT-AGATAGATCCAGAACGTAGAAATGGTC
gi|42916                      : TGCACCGTTACAGGGCAGTGAAATAGATAGAT-CCAGAACGTAGAAATGGTCTTCG---TTACCACTATGCACCGTTACAGGGCAGTGAAAC-AAATAGATCCAGACTGTAGAAATGGTC
gi|42917                      : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-ATATACTGTAGAAATGGTCCTCG---TTACCACTATGCACCGTTTTAGGACAGTGAGAT-AGATAGATCCAGACTGTAGAAATGGTC
gi|42918                      : TGCACCGTTACAGAGCAGTGAGATAGATAGAT-CCAGACTGTAGAAATGGTCTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGGT-AGATAGATCTAGACCGTAGAAATGGT
gi|42919                      : TGCGCCGTTACAGGGCAGTGAGATAGATAGAT-TCAGAACGTAGAAATGGTCTTCG---TTATCACTTTGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAGACTGTAGAAATGGTC
gi|42920                      : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-TTAGAACGTAGAAATGGTCTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGAT-AGATAGATCCAGAACGTAGAAATGGTC
gi|42921                      : TGCGTCGTTACAGGGCAGTGAGATAGATAGAT-TCAGAACGTAGAAATGGTCTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAGACTGTAGAAATGGTC
gi|42922                      : TGCGTCGTTACAGGGCAGTGAGATAGATAGAT-TCAGAACGTAGAAATGGTCTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGAT-AGATAGATCCAGAACGTAGAAATGGTC
gi|42923                      : TGCACCGTTACAGGGCAGTGAGATAGATATAT-CCAGACTGTAGAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAT-CCGTACAAATGGTC
gi|42924                      : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-CCAGAACGTAGAAATGGTCCTCG---TTACCATTATGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAT-CCGTACAAATGGTC
gi|42925                      : TGCACCGTTACAGGGCAGTGAGGTAGATAGAT-CTAGACCGTAGAAATGGTTTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGAT-AGCTAGATTCAGACCGTAGAAATGG
gi|42926                      : TGCACCGTTACAGGGCAGTGAGATAGCTAGAT-TCAGACCGTAGAAATGGCATTCG---TTACCACTATGCGCCGTTACAGGGCAGTGAGAT-AGATAGATTCAGAACGTAGAAATGGTC
gi|42927                      : TGCACCGTTACAGGGCAGTGAGAT----AGAT-CCAGACCGTAGAAATGGTCCTCG---ATACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATAGATTTAGAACGTAGAAATGGTC
gi|42928                      : TGCACCGTTACAGGGCAGTGAGATAGATATAT-CCAGACTGTAGAAATGGTCTTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAT-CCGTACAAATGGTC
gi|42929                      : TGCACCGTTACAGGGCAGTGAGATAGATATAT-CCAT-CCGTACAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTG-----AGATAGATCCAGACTGTAGAAATGGTC
gi|42930                      : TGCACCGTTACAGGGCAGTGAAACAAATAGAT-CCAGACTGTAGAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAT-CCGTACAAATGGTC
gi|42931                      : TGCACCGTTACAGGGCAGTGAGAT----AGAT-CCAGACTGTAGAAATGGTCTTCG---TTACCACTATGCGTCGTTACAGGGCAGTGAGAT-AGATAGATTCAGAACGTAGAAATGGTC
gi|42932                      : TGCACCGTTACAGGGCAGTGAGATAGATATAT-CCAT-CCGTACAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTG-----AGATAGATCCAGACCGTAGAAATGGTC
gi|42933                      : TGCACCGTTACAGGGCAGTGAGATAGATATAT-CCAT-CCGTACAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTG-----AGATAGATCCAGACCGTAGAAATGGTC
gi|42934                      : TGCAACGTTACAGGGCAGTGAGAT----AGAT-CCAGACCGTAGAAATGGTCCTCG---ATACCACTATGCGTCGTTACAGGGCAGTGAGAT-AGATAGATTCAGAACGTAGAAATGGTC
gi|42935                      : TGCACCGTTACAGGGCAGTGAGATAGATATAT-CCAT-CCGTACAAATGGTCCTCG---TTACCACTATGCAACGTTACAGGGCAGTG-----AGATAGATCCAGACCGTAGAAATGGTC
gi|42936                      : TGCACCGTTACAGGGCAGTGAGAT----AGAT-CCAGACCGTAGAAATGGTCCTCG---ATACCACTATGCGCCGTTACAGGGCAGTGCGAT-AGATAGATC
gi|42937                      : TGCGCCGTTACAGGGCAGTGCGATAGATAGAT-C
gi|42938                      :       GTCACAGGGCAGTGAGATGGACAGAT-CTAGTCAGTAGAAAT
gi|42939                      :                   TAAGACAGACAGGCGCTAAACTATAGAAACGGTCATCGCACTCCCCATTATGGACCGTTACATAGCATTGAGAC--GATAG
gi|42940                      :                                    AGACTGTAGAAATGGTCCTCAATCTCCCCACTATGGACCATTACAATACACAGAGGTAAGATAG
gi|42941                      :                                         GTAGAAATGGTCCTCG---TTACCACTTTGCACCGTTACAGGGTAGTGAGAT-AGATAGATCCAGACTATAGAAATGGTC
gi|42942                      :                                                                    ATGCACCGTTACAGGGCAGTGAGAT-AGATAGATATATACTGTAGAAATGGTC

lowQualScore                  :                                 1                       555                                 1                           
lowQualScore                  :                                 .                       ...                                 .                           
lowQualScore                  :                                 5                       444                                 5                           
consensus                     : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-CCAGACCGTAGAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATAGATCCAGACCGTAGAAATGGTC
Reference ( family-660 )      : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-CCAGACCGTAGAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATAGATCCAGACCGTAGAAATGGTC
gi|42914                      : TGCACCGTTACAGGGTAGTGAGATAGATAGAT-CCAGACTATAGAAATGGTCTTCG---TTACCACTATGCACCGTTACAGAGCAGTGAGAT-AGATAGATCCAGACTGTAGAAATGGTC
gi|42915                      : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-CCAGAACGTAGAAATGGTCTTCG---TTACCACTATGCACCGTTACAGGGCAGTGAAAT-AGATAGATCCAGAACGTAGAAATGGTC
gi|42916                      : TGCACCGTTACAGGGCAGTGAAATAGATAGAT-CCAGAACGTAGAAATGGTCTTCG---TTACCACTATGCACCGTTACAGGGCAGTGAAAC-AAATAGATCCAGACTGTAGAAATGGTC
gi|42917                      : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-ATATACTGTAGAAATGGTCCTCG---TTACCACTATGCACCGTTTTAGGACAGTGAGAT-AGATAGATCCAGACTGTAGAAATGGTC
gi|42918                      : TGCACCGTTACAGAGCAGTGAGATAGATAGAT-CCAGACTGTAGAAATGGTCTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGGT-AGATAGATCTAGACCGTAGAAATGGT
gi|42919                      : TGCGCCGTTACAGGGCAGTGAGATAGATAGAT-TCAGAACGTAGAAATGGTCTTCG---TTATCACTTTGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAGACTGTAGAAATGGTC
gi|42920                      : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-TTAGAACGTAGAAATGGTCTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGAT-AGATAGATCCAGAACGTAGAAATGGTC
gi|42921                      : TGCGTCGTTACAGGGCAGTGAGATAGATAGAT-TCAGAACGTAGAAATGGTCTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAGACTGTAGAAATGGTC
gi|42922                      : TGCGTCGTTACAGGGCAGTGAGATAGATAGAT-TCAGAACGTAGAAATGGTCTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGAT-AGATAGATCCAGAACGTAGAAATGGTC
gi|42923                      : TGCACCGTTACAGGGCAGTGAGATAGATATAT-CCAGACTGTAGAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAT-CCGTACAAATGGTC
gi|42924                      : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-CCAGAACGTAGAAATGGTCCTCG---TTACCATTATGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAT-CCGTACAAATGGTC
gi|42925                      : TGCACCGTTACAGGGCAGTGAGGTAGATAGAT-CTAGACCGTAGAAATGGTTTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGAT-AGCTAGATTCAGACCGTAGAAATGG
gi|42926                      : TGCACCGTTACAGGGCAGTGAGATAGCTAGAT-TCAGACCGTAGAAATGGCATTCG---TTACCACTATGCGCCGTTACAGGGCAGTGAGAT-AGATAGATTCAGAACGTAGAAATGGTC
gi|42927                      : TGCACCGTTACAGGGCAGTGAGAT----AGAT-CCAGACCGTAGAAATGGTCCTCG---ATACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATAGATTTAGAACGTAGAAATGGTC
gi|42928                      : TGCACCGTTACAGGGCAGTGAGATAGATATAT-CCAGACTGTAGAAATGGTCTTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAT-CCGTACAAATGGTC
gi|42929                      : TGCACCGTTACAGGGCAGTGAGATAGATATAT-CCAT-CCGTACAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTG-----AGATAGATCCAGACTGTAGAAATGGTC
gi|42930                      : TGCACCGTTACAGGGCAGTGAAACAAATAGAT-CCAGACTGTAGAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAT-CCGTACAAATGGTC
gi|42931                      : TGCACCGTTACAGGGCAGTGAGAT----AGAT-CCAGACTGTAGAAATGGTCTTCG---TTACCACTATGCGTCGTTACAGGGCAGTGAGAT-AGATAGATTCAGAACGTAGAAATGGTC
gi|42932                      : TGCACCGTTACAGGGCAGTGAGATAGATATAT-CCAT-CCGTACAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTG-----AGATAGATCCAGACCGTAGAAATGGTC
gi|42933                      : TGCACCGTTACAGGGCAGTGAGATAGATATAT-CCAT-CCGTACAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTG-----AGATAGATCCAGACCGTAGAAATGGTC
gi|42934                      : TGCAACGTTACAGGGCAGTGAGAT----AGAT-CCAGACCGTAGAAATGGTCCTCG---ATACCACTATGCGTCGTTACAGGGCAGTGAGAT-AGATAGATTCAGAACGTAGAAATGGTC
gi|42935                      : TGCACCGTTACAGGGCAGTGAGATAGATATAT-CCAT-CCGTACAAATGGTCCTCG---TTACCACTATGCAACGTTACAGGGCAGTG-----AGATAGATCCAGACCGTAGAAATGGTC
gi|42936                      : TGCACCGTTACAGGGCAGTGAGAT----AGAT-CCAGACCGTAGAAATGGTCCTCG---ATACCACTATGCGCCGTTACAGGGCAGTGCGAT-AGATAGATC
gi|42937                      : TGCGCCGTTACAGGGCAGTGCGATAGATAGAT-C
gi|42938                      :       GTCACAGGGCAGTGAGATGGACAGAT-CTAGTCAGTAGAAAT
gi|42939                      :                   TAAGACAGACAGGCGCTAAACTATAGAAACGGTCATCGCACTCCCCATTATGGACCGTTACATAGCATTGAGAC--GATAG
gi|42940                      :                                    AGACTGTAGAAATGGTCCTCAATCTCCCCACTATGGACCATTACAATACACAGAGGTAAGATAG
gi|42941                      :                                         GTAGAAATGGTCCTCG---TTACCACTTTGCACCGTTACAGGGTAGTGAGAT-AGATAGATCCAGACTATAGAAATGGTC
gi|42942                      :                                                                    ATGCACCGTTACAGGGCAGTGAGAT-AGATAGATATATACTGTAGAAATGGTC


blockSeqs                     :                                 G                       CAC                                 A
blockSeqs                     :                                 .                       ATC                                 .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                 .                       .                                   .
blockSeqs                     :                                                                                             .


blockSeqCons                  : 
originalCons                  : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-CCAGACCGTAGAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATAGATCCAGACCGTAGAAATGGTC
finalCons                     : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-CCAGACCGTAGAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATAGATCCAGACCGTAGAAATGGTC

lowQualScore                  :                                 1                       555                                 1                           
lowQualScore                  :                                 .                       ...                                 .                           
lowQualScore                  :                                 5                       444                                 5                           
consensus                     : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-CCAGACCGTAGAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATAGATCCAGACCGTAGAAATGGTC
Reference ( family-660 )      : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-CCAGACCGTAGAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATAGATCCAGACCGTAGAAATGGTC
gi|42914                      : TGCACCGTTACAGGGTAGTGAGATAGATAGAT-CCAGACTATAGAAATGGTCTTCG---TTACCACTATGCACCGTTACAGAGCAGTGAGAT-AGATAGATCCAGACTGTAGAAATGGTC
gi|42915                      : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-CCAGAACGTAGAAATGGTCTTCG---TTACCACTATGCACCGTTACAGGGCAGTGAAAT-AGATAGATCCAGAACGTAGAAATGGTC
gi|42916                      : TGCACCGTTACAGGGCAGTGAAATAGATAGAT-CCAGAACGTAGAAATGGTCTTCG---TTACCACTATGCACCGTTACAGGGCAGTGAAAC-AAATAGATCCAGACTGTAGAAATGGTC
gi|42917                      : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-ATATACTGTAGAAATGGTCCTCG---TTACCACTATGCACCGTTTTAGGACAGTGAGAT-AGATAGATCCAGACTGTAGAAATGGTC
gi|42918                      : TGCACCGTTACAGAGCAGTGAGATAGATAGAT-CCAGACTGTAGAAATGGTCTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGGT-AGATAGATCTAGACCGTAGAAATGGT
gi|42919                      : TGCGCCGTTACAGGGCAGTGAGATAGATAGAT-TCAGAACGTAGAAATGGTCTTCG---TTATCACTTTGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAGACTGTAGAAATGGTC
gi|42920                      : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-TTAGAACGTAGAAATGGTCTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGAT-AGATAGATCCAGAACGTAGAAATGGTC
gi|42921                      : TGCGTCGTTACAGGGCAGTGAGATAGATAGAT-TCAGAACGTAGAAATGGTCTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAGACTGTAGAAATGGTC
gi|42922                      : TGCGTCGTTACAGGGCAGTGAGATAGATAGAT-TCAGAACGTAGAAATGGTCTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGAT-AGATAGATCCAGAACGTAGAAATGGTC
gi|42923                      : TGCACCGTTACAGGGCAGTGAGATAGATATAT-CCAGACTGTAGAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAT-CCGTACAAATGGTC
gi|42924                      : TGCACCGTTACAGGGCAGTGAGATAGATAGAT-CCAGAACGTAGAAATGGTCCTCG---TTACCATTATGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAT-CCGTACAAATGGTC
gi|42925                      : TGCACCGTTACAGGGCAGTGAGGTAGATAGAT-CTAGACCGTAGAAATGGTTTTCG---TTACCACTTTGCACCGTTACAGGGCAGTGAGAT-AGCTAGATTCAGACCGTAGAAATGG
gi|42926                      : TGCACCGTTACAGGGCAGTGAGATAGCTAGAT-TCAGACCGTAGAAATGGCATTCG---TTACCACTATGCGCCGTTACAGGGCAGTGAGAT-AGATAGATTCAGAACGTAGAAATGGTC
gi|42927                      : TGCACCGTTACAGGGCAGTGAGAT----AGAT-CCAGACCGTAGAAATGGTCCTCG---ATACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATAGATTTAGAACGTAGAAATGGTC
gi|42928                      : TGCACCGTTACAGGGCAGTGAGATAGATATAT-CCAGACTGTAGAAATGGTCTTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAT-CCGTACAAATGGTC
gi|42929                      : TGCACCGTTACAGGGCAGTGAGATAGATATAT-CCAT-CCGTACAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTG-----AGATAGATCCAGACTGTAGAAATGGTC
gi|42930                      : TGCACCGTTACAGGGCAGTGAAACAAATAGAT-CCAGACTGTAGAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTGAGAT-AGATATATCCAT-CCGTACAAATGGTC
gi|42931                      : TGCACCGTTACAGGGCAGTGAGAT----AGAT-CCAGACTGTAGAAATGGTCTTCG---TTACCACTATGCGTCGTTACAGGGCAGTGAGAT-AGATAGATTCAGAACGTAGAAATGGTC
gi|42932                      : TGCACCGTTACAGGGCAGTGAGATAGATATAT-CCAT-CCGTACAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTG-----AGATAGATCCAGACCGTAGAAATGGTC
gi|42933                      : TGCACCGTTACAGGGCAGTGAGATAGATATAT-CCAT-CCGTACAAATGGTCCTCG---TTACCACTATGCACCGTTACAGGGCAGTG-----AGATAGATCCAGACCGTAGAAATGGTC
gi|42934                      : TGCAACGTTACAGGGCAGTGAGAT----AGAT-CCAGACCGTAGAAATGGTCCTCG---ATACCACTATGCGTCGTTACAGGGCAGTGAGAT-AGATAGATTCAGAACGTAGAAATGGTC
gi|42935                      : TGCACCGTTACAGGGCAGTGAGATAGATATAT-CCAT-CCGTACAAATGGTCCTCG---TTACCACTATGCAACGTTACAGGGCAGTG-----AGATAGATCCAGACCGTAGAAATGGTC
gi|42936                      : TGCACCGTTACAGGGCAGTGAGAT----AGAT-CCAGACCGTAGAAATGGTCCTCG---ATACCACTATGCGCCGTTACAGGGCAGTGCGAT-AGATAGATC
gi|42937                      : TGCGCCGTTACAGGGCAGTGCGATAGATAGAT-C
gi|42938                      :       GTCACAGGGCAGTGAGATGGACAGAT-CTAGTCAGTAGAAAT
gi|42939                      :                   TAAGACAGACAGGCGCTAAACTATAGAAACGGTCATCGCACTCCCCATTATGGACCGTTACATAGCATTGAGAC--GATAG
gi|42940                      :                                    AGACTGTAGAAATGGTCCTCAATCTCCCCACTATGGACCATTACAATACACAGAGGTAAGATAG
gi|42941                      :                                         GTAGAAATGGTCCTCG---TTACCACTTTGCACCGTTACAGGGTAGTGAGAT-AGATAGATCCAGACTATAGAAATGGTC
gi|42942                      :                                                                    ATGCACCGTTACAGGGCAGTGAGAT-AGATAGATATATACTGTAGAAATGGTC