lowQualScore : 111111111111 44 111
lowQualScore : 55 2 2 8888888 1 666666666666 666666 22 33333 22 1 55 1 33 333 1 7 1 6 1
lowQualScore : .. . . ....... . ............ ...... .. ..... .. . .. . .. ... . . . . .
lowQualScore : 66 7 5 1111111 3 111111111111 444444 00 66666 00 4 77 4 22 555 5 4 5 8 5
consensus : ACGTC-GT-ATT-TT-------ACGT----T------AGTATTA------TATGGCGTTCTCTTGACGT--CGTCCGAAATC-----G--CAAG-CAAACG-T-CGTG--TTTTTTTAAGTG--TT-TCA-T-TTTAATT-TAAA
Reference ( gi|137890 ) : ACGTC-AT-ATT-TT-------ACAT----T------GGTATTA------TATGGCGTTCTCTTGACGT--CGTCCGAAATC-----A--CAAG-CAAACA-T-CGTGATTTTTTTTAAGTT--TT-TCA-T-TTCAATT-TAAA
gi|137891 : ACATC-GTGATT-TT-------ACGC----A------AGTATTA------TATGGCGTTTTCTTGACGT--TGTTCGAAATC-----A--CAAG-CAAACG-T-CGTG--TTTTTTTAAGTG--TT-TAA-T-ATCAATT-TAAA
gi|137895 : ACTTT-GT-ATT-TT-------ACAT----T------AGCATTA------TATGGCATTTT-TTGACGT--CGTCCGAAATT-----A--CAAG-CAAACA-T-CAT-AGTTTTTTTAAGTG--TT-TCA-G-TTTAATT-
gi|137894 : ACGTC-GT-ATT-TT-------ACGT----A------AGTACCA------TATGACGTTTTCTTGACGT--CGTCCGAAATC-----A---AAGTCAAA-----CGTGTCTTTTTTTAAGTG--TT-TCA-T-TTTGATT-AAAA
gi|137892 : ACGTC-AT-ATT-TT-------ACGC----A------AGTATCA------T--GACATTCTTTTGACGT--CGTCCGAAATC-----A--CAAG-CAAACG-T-CATG---TTGTTTAAGTG--AT-TCA-T-TTTAATT-TTAA
gi|137899 : ATGTA-AT-ATT-TT-------ACAT----T------AGTATTA------TATGGTGTTTTTCTG--GTTGCGTCCAAAATC-----A--CAAG-CAAACA-T-GGTGTTTGTTTTAAAGTG--TT-TTA-T-TTAAATT-TAAA
gi|137893 : ACGTC-GT-AATATT-------ACGT----T------AGTATTA------TATGGCGTTTCCTTGA-----TGTCCGAAATC-----A--CACG-CAAACG-T-CGTG---TTTTTTAAGTG--TT-TAT-T-TTTAATT-TAAA
gi|137897 : ACGTC-GT-ATT-TT-------ACGT----T------AGTACCA------TATGACGTTCTTTTGATAT--CATCTGAAATT-----A--AAAG-CAAA-----CGTG--TTTTTTTAAGTG--TT-CAA-T-TTTGATT-AAAA
gi|137898 : ACGTC-GT-ATT-TTCTGTTTTATAA----T------AGAATTA------TATGGTATTTTCTTGACGA--CATCCGAAATC-----A--CAAG-AAAATG-T-CGTG--TTTTATTAAGTG--TT-TGA-T-TTGAATT-CAAA
gi|137901 : ACGTC-GT-AA-----------ACAT----G------GCCATGT------TATGGCGTTTTCTTGACGT--CGTCCGAAATC-----A--CAAG-TAAACG-T-CGTG--TTTTTTTAAATTAAAT-TCA-T-----ATT-TA
gi|137896 : ACATC-GA-ATA-TT-------ACGT----G------AATTTCA------TATAACGTTCTCTTGACGT--CGGCCGAAATA-----A--CAAG-CAAACG-T-TTT--CTTTTTTAAAGTG--TT-TCA-T-TTTAATT-TAAA
gi|137900 : ACGTCGAT--TT-TT-------ACGT----T------AGAATCA------TATGACGTTCGCTGGACGT--CGTCCGAAATC-----A--CAAG-AAAACG-T-CG----TTTGTTTAAGTG--TTAAGA-T-TTAAATTATAAA
gi|137902 : ACGTC-GT-ACT-TT-------ATGA----T------AGTATTA------TACGGCGTTCTTTTGACGT--CGT
gi|137903 : GTC-GT-GTT-TT-------ACGT----T------AGTATTA------GACGGTGTTCTCTTGACGT--CGTCCGAAATC-----A--C------AACG-T-CGTGTTTCATTTTAACTT--
gi|137904 : C-GT-ATT-TT-------ACGT----TTAACTTAGTACTACTCGTATATGGCGGTCTCTCGACGT--CGTCCGAAATC-----A--CAAG-CAAACG-T-CGTG---TTTTTTAAGTG--TT-TCG-T-TTTAATT-TCAAaaa
gi|137905 : T-ATT-TT-------ACGT----T------AGCATTA------TATGGCGTTCTCTTGACGT--CATCTGATGTT--------TAA------------GTG--TTTTTTTAAGTG--TT-TAA-T-TTTAATT-TTAA
gi|137907 : g-TT-------ACATGTACC------AGTAT-A------TATGGTGTTCTCTTGACGT--CGTTCGAATTCACAATA--CAAG-CAAACG-T-CGTG---TTTTTTAAGTG--TT-TCA-T-TTTAATT-AAAA
gi|137909 : ----T------AGTATTT------TATGGCATTTTCTTGGCGT--CGTCTGAAATC-----A--CGAG-CAAACG-T-CGTG--TTTTTTTAAGTG--TT-TGA-T-TTAAATC-TAAA
gi|137908 : TATTA------TATTGTGTTTTTTTGA-----CGTCTGAAATC-----A-------CAAACA-T-CGTA--TTTTTGTAAGTT--TT-T-A-TCTTAAATT-CAA
gi|137910 : ttacTCGACGT--CGTCCAAAATC-----G--AAGG-CAAACG-T-CATG--TGTTTTTAAGTG--TT-TCG-T-TTTTCTT-TAAA
gi|137911 : TGACGT--CGTCAAAAATA-----G--CTGG-CAAACGGTACGTG----TTTTTAAGTG--TT-TCATT-TTTAGTT-TGAA
gi|137912 : GATGT--CGTCCGAAATA-----G--CAGA-CAAACG-T-CGTG--TGTTTTTAAGGG--TT-TCATT-TTTAACT-TAAA
gi|137913 : GACGT--CGTCCGAAATA-----G--CAGG-CAAACG-T-CGCA---TGTTTTAATCT--TT-TCATT-TTTAATT-
gi|137914 : GACGT--CATCCAAAATA-----G--CAAG-CAAACG-T-TGT--TTGTTTTTATGTG--TT-TCA-T-TT
gi|137915 : GATGT--CATCCGAAATA-----G--CAGG-CAAA-A-C-GGTGTGTGTTTTTAAGTG--TT-TCATT-TTTAATT-TGAAt
gi|137916 : ACGT--TGTCCAAAATA-----G--CAGG-CAAACG-T-CGTG--TGTTTATAAATG--TT-TCA-T-TTTAACT-
gi|137917 : ACAT--CGTCCGGAATA-----G--CAGG-CAAACA-T-CATA--TGTATTTAAGAG--TT-TCT-T-TTTAATT-TGAA
gi|137918 : GT--CATCCAAAAAA-----AAACAGG-CAAACG-T-CATA--TGCTTTTGAGTG--TT-TCATT-TTCAATT-TGAA
gi|137906 : T--CGTCCGAAATC-----A--TAAG-CAAACG-T-CGTG-TTTTTTTTAA-TG--TT-TCA-A-TTTAATT-TAGA
gi|137919 : tttatattcatttcatattatggtttatTC-----A--CAAG-CAAACG-T-TGTG---TTTTTTAAGTG--AT-TCA-T-TTTAATT-TAAA
Alignments
lowQualScore : 1111111
lowQualScore : 2 2 3333333 666666 11 99999999 1 1 1 222 1 1 222 1 5 1 2 1
lowQualScore : . . ....... ...... .. ........ . . . ... . . ... . . . . .
lowQualScore : 7 7 6666666 111111 99 33333333 4 4 4 222 4 4 444 4 5 4 8 5
consensus : ACGTCGT-ATT-TTACGTT-------AGTATTA------TATGGCGTTCTCTTGACGT--CGTCCGAAATC-----G--CAAG-CAAA-CGTCGT-G--TTT-TTTT-AAGTGT---T-TCA-T-TTT-AATT-TAAA
Reference ( family-657 ) : ACGTCGT-ATT-TTACGTT-------AGTATTA------TATGGCGTTCTCTTGACGT--CGTCCGAAATC-----G--CAAG-CAAA-CGTCGT-G--TTT-TTTT-AAGTGT---T-TCA-T-TTT-AATT-TAAA
gi|137890 : ACGTCAT-ATT-TTACATT-------GGTATTA------TATGGCGTTCTCTTGACGT--CGTCCGAAATC-----A--CAAG-CAAA-CATCGT-GATTTT-TTTT-AAGTTT---T-TCA-T-TTC-AATT-TAAA
gi|137891 : ACATCGTGATT-TTACGCA-------AGTATTA------TATGGCGTTTTCTTGACGT--TGTTCGAAATC-----A--CAAG-CAAA-CGTCGT-G--TTT-TTTT-AAGTGT---T-TAA-T-ATC-AATT-TAAA
gi|137892 : ACGTCAT-ATT-TTACGCA-------AGTATCA------T--GACATTCTTTTGACGT--CGTCCGAAATC-----A--CAAG-CAAA-CGTCAT-G---TT-GTTT-AAGTGA---T-TCA-T-TTT-AATT-TTAA
gi|137893 : ACGTCGT-AATATTACGTT-------AGTATTA------TATGGCGTTTCCTTGA-----TGTCCGAAATC-----A--CACG-CAAA-CGTCGT-G---TT-TTTT-AAGTGT---T-TAT-T-TTT-AATT-TAAA
gi|137894 : ACGTCGT-ATT-TTACGTA-------AGTACCA------TATGACGTTTTCTTGACGT--CGTCCGAAATC-----A---AAGTCAAA-CGT-GT-C--TTT-TTTT-AAGTGT---T-TCA-T-TTT-GATT-AAAA
gi|137895 : ACTTTGT-ATT-TTACATT-------AGCATTA------TATGGCATTTT-TTGACGT--CGTCCGAAATT-----A--CAAG-CAAA-CATCATAG--TTT-TTTT-AAGTGT---T-TCA-G-TTT-AATT-
gi|137896 : ACATCGA-ATA-TTACGTG-------AATTTCA------TATAACGTTCTCTTGACGT--CGGCCGAAATA-----A--CAAG-CAAA-CGTTTT-C--TTT-TTTA-AAGTGT---T-TCA-T-TTT-AATT-TAAA
gi|137897 : ACGTCGT-ATT-TTACGTT-------AGTACCA------TATGACGTTCTTTTGATAT--CATCTGAAATT-----A--AAAG-CAAA----CGT-G--TTT-TTTT-AAGTGT---T-CAA-T-TTT-GATT-AAAA
gi|137898 : ACGTCGT-ATT-TTCTGTTTTATAATAGAATTA------TATGGTATTTTCTTGACGA--CATCCGAAATC-----A--CAAG-AAAA-TGTCGT-G--TTT-TATT-AAGTGT---T-TGA-T-TTG-AATT-CAAA
gi|137899 : ATGTAAT-ATT-TTACATT-------AGTATTA------TATGGTGTTTTTCTG--GTTGCGTCCAAAATC-----A--CAAG-CAAA-CATGGT-G--TTTGTTTTAAAGTGT---T-TTA-T-TTA-AATT-TAAA
gi|137900 : ACGTCGA-TTT-TTACGTT-------AGAATCA------TATGACGTTCGCTGGACGT--CGTCCGAAATC-----A--CAAG-AAAA-CGTC---G--TTT-GTTT-AAGTGT---TAAGA-T-TTA-AATTATAAA
gi|137901 : ------TATGGCGTTTTCTTGACGT--CGTCCGAAATC-----A--CAAG-TAAA-CGTCGT-G--TTT-TTTT-AAAT-TAAAT-TCA-TATTT-A
gi|137902 : acgtcgtaaacatggccatgtACGTCGT-ACT-TTATGAT-------AGTATTA------TACGGCGTTCTTTTGACGT--CGT
gi|137903 : GTCGT-GTT-TTACGTT-------AGTATTA------GACGGTGTTCTCTTGACGT--CGTCCGAAATC-----A--C------AA-CGTC-----------------GTGT---T-TCA-T-TTT-AACT-TAAA
gi|137904 : CGT-ATT-TTACGTTTAACTT-AGTACTACTCGTATATGGCGGTCTCTCGACGT--CGTCCGAAATC-----A--CAAG-CAAA-CGTCGT-G---TT-TTTT-AAGTGT---T-TCG-T-TTT-AATT-TCAA
gi|137905 : GT-ATT-TTACGTT-------AGCATTA------TATGGCGTTCTCTTGACGT--CATCTGATGTT--------TAA-----------GT-G--TTT-TTTT-AAGTGT---T-TAA-T-TTT-AATT-TTAA
gi|137906 : T--CGTCCGAAATC-----A--TAAG-CAAA-CGTCGT-G--TTT-TTTT-TAATGT---T-TCA-A-TTT-AATT-TAGA
gi|137907 : tttatattcatttcatattatggtttat-------AGTAT-A------TATGGTGTTCTCTTGACGT--CGTTCGAATTCACAATA--CAAG-CAAA-CGTCGT-G---TT-TTTT-AAGTGT---T-TCA-T-TTT-AATT-AAAA
gi|137908 : ttacatgtaccTT-------ACTATTA------TATTGTGTTTTTTTGA-----CGTCTGAAATC-----------A-CAAA-CATCGT-A--TTT-TTGT-AAGT-T---T-TTA-T-CTTAAATT-CAA
gi|137909 : T-------AGTATTT------TATGGCATTTTCTTGGCGT--CGTCTGAAATC-----A--CGAG-CAAA-CGTCGT-G--TTT-TTTT-AAGTGT---T-TGA-T-TTA-AATC-TAAA
gi|137910 : TCGACGT--CGTCCAAAATC-----G--AAGG-CAAA-CGTCAT-G--TGT-TTTT-AAGTGT---T-TCG-T-TTT-TCTT-TAAA
gi|137911 : TGACGT--CGTCAAAAATA-----G--CTGG-CAAA-CGGTAC-G--TGT-TTTT-AAGTGT---T-TCATT-TTT-AGTT-TGAA
gi|137912 : GATGT--CGTCCGAAATA-----G--CAGA-CAAA-CGTCGT-G--TGT-TTTT-AAGGGT---T-TCATT-TTT-AACT-TAAA
gi|137913 : GACGT--CGTCCGAAATA-----G--CAGG-CAAA-CGTCGC-A---TG-TTTT-AATCTT---T-TCATT-TTT-AATT-
gi|137914 : GACGT--CATCCAAAATA-----G--CAAG-CAAA-CGTTGT-T--TGT-TTTT-ATGTGT---T-TCA-T-TTT-
gi|137915 : GATGT--CATCCGAAATA-----G--CAGG-CAAAACGGTGT-G--TGT-TTTT-AAGTGT---T-TCATT-TTT-AATT-TGAA
gi|137916 : ACGT--TGTCCAAAATA-----G--CAGG-CAAA-CGTCGT-G--TGT-TTAT-AAATGT---T-TCA-T-TTT-AACT-
gi|137917 : ACAT--CGTCCGGAATA-----G--CAGG-CAAA-CATCAT-A--TGT-ATTT-AAGAGT---T-TCT-T-TTT-AATT-TGAA
gi|137918 : GT--CATCCAAAAAA-----AAACAGG-CAAA-CGTCAT-A--TGC-TTTT-GAGTGT---T-TCA-T-TTTCAATT-TGAA
gi|137919 : TC-----A--CAAG-CAAA-CGTTGT-G--TTT-T-TT-AAGTGA---T-TCA-T-TTT-AATT-TAAA
Alignments
lowQualScore : 1111111
lowQualScore : 2 2 3333333 666666 11 99999999 1 1 1 222 1 1 222 1 5 1 2 1
lowQualScore : . . ....... ...... .. ........ . . . ... . . ... . . . . .
lowQualScore : 7 7 6666666 111111 99 33333333 4 4 4 222 4 4 444 4 5 4 8 5
consensus : ACGTCGT-ATT-TTACGTT-------AGTATTA------TATGGCGTTCTCTTGACGT--CGTCCGAAATC-----G--CAAG-CAAA-CGTCGT-G--TTT-TTTT-AAGTGT---T-TCA-T-TTT-AATT-TAAA
Reference ( family-657 ) : ACGTCGT-ATT-TTACGTT-------AGTATTA------TATGGCGTTCTCTTGACGT--CGTCCGAAATC-----G--CAAG-CAAA-CGTCGT-G--TTT-TTTT-AAGTGT---T-TCA-T-TTT-AATT-TAAA
gi|137890 : ACGTCAT-ATT-TTACATT-------GGTATTA------TATGGCGTTCTCTTGACGT--CGTCCGAAATC-----A--CAAG-CAAA-CATCGT-GATTTT-TTTT-AAGTTT---T-TCA-T-TTC-AATT-TAAA
gi|137891 : ACATCGTGATT-TTACGCA-------AGTATTA------TATGGCGTTTTCTTGACGT--TGTTCGAAATC-----A--CAAG-CAAA-CGTCGT-G--TTT-TTTT-AAGTGT---T-TAA-T-ATC-AATT-TAAA
gi|137892 : ACGTCAT-ATT-TTACGCA-------AGTATCA------T--GACATTCTTTTGACGT--CGTCCGAAATC-----A--CAAG-CAAA-CGTCAT-G---TT-GTTT-AAGTGA---T-TCA-T-TTT-AATT-TTAA
gi|137893 : ACGTCGT-AATATTACGTT-------AGTATTA------TATGGCGTTTCCTTGA-----TGTCCGAAATC-----A--CACG-CAAA-CGTCGT-G---TT-TTTT-AAGTGT---T-TAT-T-TTT-AATT-TAAA
gi|137894 : ACGTCGT-ATT-TTACGTA-------AGTACCA------TATGACGTTTTCTTGACGT--CGTCCGAAATC-----A---AAGTCAAA-CGT-GT-C--TTT-TTTT-AAGTGT---T-TCA-T-TTT-GATT-AAAA
gi|137895 : ACTTTGT-ATT-TTACATT-------AGCATTA------TATGGCATTTT-TTGACGT--CGTCCGAAATT-----A--CAAG-CAAA-CATCATAG--TTT-TTTT-AAGTGT---T-TCA-G-TTT-AATT-
gi|137896 : ACATCGA-ATA-TTACGTG-------AATTTCA------TATAACGTTCTCTTGACGT--CGGCCGAAATA-----A--CAAG-CAAA-CGTTTT-C--TTT-TTTA-AAGTGT---T-TCA-T-TTT-AATT-TAAA
gi|137897 : ACGTCGT-ATT-TTACGTT-------AGTACCA------TATGACGTTCTTTTGATAT--CATCTGAAATT-----A--AAAG-CAAA----CGT-G--TTT-TTTT-AAGTGT---T-CAA-T-TTT-GATT-AAAA
gi|137898 : ACGTCGT-ATT-TTCTGTTTTATAATAGAATTA------TATGGTATTTTCTTGACGA--CATCCGAAATC-----A--CAAG-AAAA-TGTCGT-G--TTT-TATT-AAGTGT---T-TGA-T-TTG-AATT-CAAA
gi|137899 : ATGTAAT-ATT-TTACATT-------AGTATTA------TATGGTGTTTTTCTG--GTTGCGTCCAAAATC-----A--CAAG-CAAA-CATGGT-G--TTTGTTTTAAAGTGT---T-TTA-T-TTA-AATT-TAAA
gi|137900 : ACGTCGA-TTT-TTACGTT-------AGAATCA------TATGACGTTCGCTGGACGT--CGTCCGAAATC-----A--CAAG-AAAA-CGTC---G--TTT-GTTT-AAGTGT---TAAGA-T-TTA-AATTATAAA
gi|137901 : ------TATGGCGTTTTCTTGACGT--CGTCCGAAATC-----A--CAAG-TAAA-CGTCGT-G--TTT-TTTT-AAAT-TAAAT-TCA-TATTT-A
gi|137902 : acgtcgtaaacatggccatgtACGTCGT-ACT-TTATGAT-------AGTATTA------TACGGCGTTCTTTTGACGT--CGT
gi|137903 : GTCGT-GTT-TTACGTT-------AGTATTA------GACGGTGTTCTCTTGACGT--CGTCCGAAATC-----A--C------AA-CGTC-----------------GTGT---T-TCA-T-TTT-AACT-TAAA
gi|137904 : CGT-ATT-TTACGTTTAACTT-AGTACTACTCGTATATGGCGGTCTCTCGACGT--CGTCCGAAATC-----A--CAAG-CAAA-CGTCGT-G---TT-TTTT-AAGTGT---T-TCG-T-TTT-AATT-TCAA
gi|137905 : GT-ATT-TTACGTT-------AGCATTA------TATGGCGTTCTCTTGACGT--CATCTGATGTT--------TAA-----------GT-G--TTT-TTTT-AAGTGT---T-TAA-T-TTT-AATT-TTAA
gi|137906 : T--CGTCCGAAATC-----A--TAAG-CAAA-CGTCGT-G--TTT-TTTT-TAATGT---T-TCA-A-TTT-AATT-TAGA
gi|137907 : tttatattcatttcatattatggtttat-------AGTAT-A------TATGGTGTTCTCTTGACGT--CGTTCGAATTCACAATA--CAAG-CAAA-CGTCGT-G---TT-TTTT-AAGTGT---T-TCA-T-TTT-AATT-AAAA
gi|137908 : ttacatgtaccTT-------ACTATTA------TATTGTGTTTTTTTGA-----CGTCTGAAATC-----------A-CAAA-CATCGT-A--TTT-TTGT-AAGT-T---T-TTA-T-CTTAAATT-CAA
gi|137909 : T-------AGTATTT------TATGGCATTTTCTTGGCGT--CGTCTGAAATC-----A--CGAG-CAAA-CGTCGT-G--TTT-TTTT-AAGTGT---T-TGA-T-TTA-AATC-TAAA
gi|137910 : TCGACGT--CGTCCAAAATC-----G--AAGG-CAAA-CGTCAT-G--TGT-TTTT-AAGTGT---T-TCG-T-TTT-TCTT-TAAA
gi|137911 : TGACGT--CGTCAAAAATA-----G--CTGG-CAAA-CGGTAC-G--TGT-TTTT-AAGTGT---T-TCATT-TTT-AGTT-TGAA
gi|137912 : GATGT--CGTCCGAAATA-----G--CAGA-CAAA-CGTCGT-G--TGT-TTTT-AAGGGT---T-TCATT-TTT-AACT-TAAA
gi|137913 : GACGT--CGTCCGAAATA-----G--CAGG-CAAA-CGTCGC-A---TG-TTTT-AATCTT---T-TCATT-TTT-AATT-
gi|137914 : GACGT--CATCCAAAATA-----G--CAAG-CAAA-CGTTGT-T--TGT-TTTT-ATGTGT---T-TCA-T-TTT-
gi|137915 : GATGT--CATCCGAAATA-----G--CAGG-CAAAACGGTGT-G--TGT-TTTT-AAGTGT---T-TCATT-TTT-AATT-TGAA
gi|137916 : ACGT--TGTCCAAAATA-----G--CAGG-CAAA-CGTCGT-G--TGT-TTAT-AAATGT---T-TCA-T-TTT-AACT-
gi|137917 : ACAT--CGTCCGGAATA-----G--CAGG-CAAA-CATCAT-A--TGT-ATTT-AAGAGT---T-TCT-T-TTT-AATT-TGAA
gi|137918 : GT--CATCCAAAAAA-----AAACAGG-CAAA-CGTCAT-A--TGC-TTTT-GAGTGT---T-TCA-T-TTTCAATT-TGAA
gi|137919 : TC-----A--CAAG-CAAA-CGTTGT-G--TTT-T-TT-AAGTGA---T-TCA-T-TTT-AATT-TAAA
blockSeqs : G A TTATAAT CTCGTA TG ACAATA T A A T G A AAA A T A A A
blockSeqs : . . TAACTT . . AAA . . . T . . . . T . C .
blockSeqs : . . . . . A . . . T . . . . T . . .
blockSeqs : . . . . . A . . . T . . . . T . . .
blockSeqs : . . . . . A . . . T . . . . . . . .
blockSeqs : . . . . . A . . . T . . . . . . . .
blockSeqs : . . . . . A . . . T . . . . . . . .
blockSeqs : . . . . . A . . . T . . . . . . . .
blockSeqs : . . . . . A . . . T . . . . . . . .
blockSeqs : . . . . . A . . . T . . . . . . . .
blockSeqs : . . . . . A . . . T . . . . . . . .
blockSeqs : . . . . . A . . . T . . . . . . . .
blockSeqs : . . . . . A . . . T . . . . . . . .
blockSeqs : . . . . . A . . . T . . . . . . . .
blockSeqs : . . . A . . . T . . . . . . . .
blockSeqs : . . . A . . . T . . . . . . . .
blockSeqs : . . . A . . . T . . . . . . . .
blockSeqs : . . G . . . T . . . . . . . .
blockSeqs : . G . . . T . . . . . . . .
blockSeqs : . G . . . T . . . . . . . .
blockSeqs : . G . . . T . . . . . . . .
blockSeqs : . G . . . T . . . . . . . .
blockSeqs : . G . . . . . . . . . . . .
blockSeqs : . G . . . . . . . . . . . .
blockSeqs : . G . . . . . . . . . . . .
blockSeqs : . A . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqCons : T**
originalCons : ACGTCGT-ATT-TTACGTT-------AGTATTA------TATGGCGTTCTCTTGACGT--CGTCCGAAATC-----G--CAAG-CAAA-CGTCGT-G--TTT-TTTT-AAGTGT---T-TCA-T-TTT-AATT-TAAA
finalCons : ACGTCGT-ATT-TTACGTT-------AGTATTA------TATGGCGTTCTCTTGACGT--CGTCCGAAATC-----G--CAAG-CAAA-CGTCGT-GT--TT-TTTT-AAGTGT---T-TCA-T-TTT-AATT-TAAA
Alignments
lowQualScore : 1111111
lowQualScore : 2 2 3333333 666666 11 99999999 1 1 1 222 1 1 222 1 5 1 2 1
lowQualScore : . . ....... ...... .. ........ . . . ... . . ... . . . . .
lowQualScore : 7 7 6666666 111111 99 33333333 4 4 4 222 4 4 444 4 5 4 8 5
consensus : ACGTCGT-ATT-TTACGTT-------AGTATTA------TATGGCGTTCTCTTGACGT--CGTCCGAAATC-----G--CAAG-CAAA-CGTCGT-G--TTT-TTTT-AAGTGT---T-TCA-T-TTT-AATT-TAAA
Reference ( family-657 ) : ACGTCGT-ATT-TTACGTT-------AGTATTA------TATGGCGTTCTCTTGACGT--CGTCCGAAATC-----G--CAAG-CAAA-CGTCGT-G--TTT-TTTT-AAGTGT---T-TCA-T-TTT-AATT-TAAA
gi|137890 : ACGTCAT-ATT-TTACATT-------GGTATTA------TATGGCGTTCTCTTGACGT--CGTCCGAAATC-----A--CAAG-CAAA-CATCGT-GATTTT-TTTT-AAGTTT---T-TCA-T-TTC-AATT-TAAA
gi|137891 : ACATCGTGATT-TTACGCA-------AGTATTA------TATGGCGTTTTCTTGACGT--TGTTCGAAATC-----A--CAAG-CAAA-CGTCGT-G--TTT-TTTT-AAGTGT---T-TAA-T-ATC-AATT-TAAA
gi|137892 : ACGTCAT-ATT-TTACGCA-------AGTATCA------T--GACATTCTTTTGACGT--CGTCCGAAATC-----A--CAAG-CAAA-CGTCAT-G---TT-GTTT-AAGTGA---T-TCA-T-TTT-AATT-TTAA
gi|137893 : ACGTCGT-AATATTACGTT-------AGTATTA------TATGGCGTTTCCTTGA-----TGTCCGAAATC-----A--CACG-CAAA-CGTCGT-G---TT-TTTT-AAGTGT---T-TAT-T-TTT-AATT-TAAA
gi|137894 : ACGTCGT-ATT-TTACGTA-------AGTACCA------TATGACGTTTTCTTGACGT--CGTCCGAAATC-----A---AAGTCAAA-CGT-GT-C--TTT-TTTT-AAGTGT---T-TCA-T-TTT-GATT-AAAA
gi|137895 : ACTTTGT-ATT-TTACATT-------AGCATTA------TATGGCATTTT-TTGACGT--CGTCCGAAATT-----A--CAAG-CAAA-CATCATAG--TTT-TTTT-AAGTGT---T-TCA-G-TTT-AATT-
gi|137896 : ACATCGA-ATA-TTACGTG-------AATTTCA------TATAACGTTCTCTTGACGT--CGGCCGAAATA-----A--CAAG-CAAA-CGTTTT-C--TTT-TTTA-AAGTGT---T-TCA-T-TTT-AATT-TAAA
gi|137897 : ACGTCGT-ATT-TTACGTT-------AGTACCA------TATGACGTTCTTTTGATAT--CATCTGAAATT-----A--AAAG-CAAA----CGT-G--TTT-TTTT-AAGTGT---T-CAA-T-TTT-GATT-AAAA
gi|137898 : ACGTCGT-ATT-TTCTGTTTTATAATAGAATTA------TATGGTATTTTCTTGACGA--CATCCGAAATC-----A--CAAG-AAAA-TGTCGT-G--TTT-TATT-AAGTGT---T-TGA-T-TTG-AATT-CAAA
gi|137899 : ATGTAAT-ATT-TTACATT-------AGTATTA------TATGGTGTTTTTCTG--GTTGCGTCCAAAATC-----A--CAAG-CAAA-CATGGT-G--TTTGTTTTAAAGTGT---T-TTA-T-TTA-AATT-TAAA
gi|137900 : ACGTCGA-TTT-TTACGTT-------AGAATCA------TATGACGTTCGCTGGACGT--CGTCCGAAATC-----A--CAAG-AAAA-CGTC---G--TTT-GTTT-AAGTGT---TAAGA-T-TTA-AATTATAAA
gi|137901 : ------TATGGCGTTTTCTTGACGT--CGTCCGAAATC-----A--CAAG-TAAA-CGTCGT-G--TTT-TTTT-AAAT-TAAAT-TCA-TATTT-A
gi|137902 : acgtcgtaaacatggccatgtACGTCGT-ACT-TTATGAT-------AGTATTA------TACGGCGTTCTTTTGACGT--CGT
gi|137903 : GTCGT-GTT-TTACGTT-------AGTATTA------GACGGTGTTCTCTTGACGT--CGTCCGAAATC-----A--C------AA-CGTC-----------------GTGT---T-TCA-T-TTT-AACT-TAAA
gi|137904 : CGT-ATT-TTACGTTTAACTT-AGTACTACTCGTATATGGCGGTCTCTCGACGT--CGTCCGAAATC-----A--CAAG-CAAA-CGTCGT-G---TT-TTTT-AAGTGT---T-TCG-T-TTT-AATT-TCAA
gi|137905 : GT-ATT-TTACGTT-------AGCATTA------TATGGCGTTCTCTTGACGT--CATCTGATGTT--------TAA-----------GT-G--TTT-TTTT-AAGTGT---T-TAA-T-TTT-AATT-TTAA
gi|137906 : T--CGTCCGAAATC-----A--TAAG-CAAA-CGTCGT-G--TTT-TTTT-TAATGT---T-TCA-A-TTT-AATT-TAGA
gi|137907 : tttatattcatttcatattatggtttat-------AGTAT-A------TATGGTGTTCTCTTGACGT--CGTTCGAATTCACAATA--CAAG-CAAA-CGTCGT-G---TT-TTTT-AAGTGT---T-TCA-T-TTT-AATT-AAAA
gi|137908 : ttacatgtaccTT-------ACTATTA------TATTGTGTTTTTTTGA-----CGTCTGAAATC-----------A-CAAA-CATCGT-A--TTT-TTGT-AAGT-T---T-TTA-T-CTTAAATT-CAA
gi|137909 : T-------AGTATTT------TATGGCATTTTCTTGGCGT--CGTCTGAAATC-----A--CGAG-CAAA-CGTCGT-G--TTT-TTTT-AAGTGT---T-TGA-T-TTA-AATC-TAAA
gi|137910 : TCGACGT--CGTCCAAAATC-----G--AAGG-CAAA-CGTCAT-G--TGT-TTTT-AAGTGT---T-TCG-T-TTT-TCTT-TAAA
gi|137911 : TGACGT--CGTCAAAAATA-----G--CTGG-CAAA-CGGTAC-G--TGT-TTTT-AAGTGT---T-TCATT-TTT-AGTT-TGAA
gi|137912 : GATGT--CGTCCGAAATA-----G--CAGA-CAAA-CGTCGT-G--TGT-TTTT-AAGGGT---T-TCATT-TTT-AACT-TAAA
gi|137913 : GACGT--CGTCCGAAATA-----G--CAGG-CAAA-CGTCGC-A---TG-TTTT-AATCTT---T-TCATT-TTT-AATT-
gi|137914 : GACGT--CATCCAAAATA-----G--CAAG-CAAA-CGTTGT-T--TGT-TTTT-ATGTGT---T-TCA-T-TTT-
gi|137915 : GATGT--CATCCGAAATA-----G--CAGG-CAAAACGGTGT-G--TGT-TTTT-AAGTGT---T-TCATT-TTT-AATT-TGAA
gi|137916 : ACGT--TGTCCAAAATA-----G--CAGG-CAAA-CGTCGT-G--TGT-TTAT-AAATGT---T-TCA-T-TTT-AACT-
gi|137917 : ACAT--CGTCCGGAATA-----G--CAGG-CAAA-CATCAT-A--TGT-ATTT-AAGAGT---T-TCT-T-TTT-AATT-TGAA
gi|137918 : GT--CATCCAAAAAA-----AAACAGG-CAAA-CGTCAT-A--TGC-TTTT-GAGTGT---T-TCA-T-TTTCAATT-TGAA
gi|137919 : TC-----A--CAAG-CAAA-CGTTGT-G--TTT-T-TT-AAGTGA---T-TCA-T-TTT-AATT-TAAA