lowQualScore : 1 222 444444 7777777777777 11 11 7 11
lowQualScore : . ... ...... ............. .. .. . ..
lowQualScore : 4 555 111111 6666666666666 99 99 0 99
consensus : TTTTTC-TGG---TGCATA------GCA-------------CATCATATTGCA--C--AGCTGAAAAGTCCATA--ACTGTATAAT
Reference ( gi|95604 ) : TTTTTC-TGG---TGCATA------GCA-------------CATCATATTGCA--C--AGCTGAAAAGTCTATA--ATTGTATAAT
gi|95610 : TTTTTC-TGG---TGCATG------GCA-------------CATCATATTGTA--C--AGCTGAAAAGTCCATA--CTTGTATAAT
gi|95611 : TTTTTC-TGG---TGCATA------GCA-------------TATCAGATCGCA--C--AGCTGAAAAGTCCATA--ATTATATAAT
gi|95608 : TTTTTC-TGG---TGAATA------GCA-------------CATCATATTGCA--C--AGCTGAAAAGTCCATA--ATTG-ATAGT
gi|95606 : TTTTTC-TGG---TGCATA------GAT-------------CATCATATTGCA--C--AGCTGAAAAGTCCATA--ATTGTATat
gi|95612 : TTTTTC-TGG---TGCATA------GCA-------------CATCATATTTCA--C--AGCTGAAAAATCCGTT--ATTGTATAAT
gi|95607 : TTTTTC-TGT---TGCATA------GAA-------------CATCATATTGCA--C--AGCTGAAAAGTCCATA--ACTGT
gi|95621 : TTTTTT-TGG---TGCATA------GCC-------------CATCATATTGCA--C--ATCTGAAAATGCCATA--ATTGTATAATtttat
gi|95616 : TTTTTC-TGG---TGTATA------GCA-------------CATCGTATTACA--C--AGCTGAAAAGTCCGTA--ACTGT
gi|95614 : TTTTTC-TGG---TGAAAA------GCA-------------CATCATATTGCA--C--AGCTGGAAAGTCCATA--ACTGTtctattat
gi|95617 : TTTTTC-TGT---TGCA-A------GCA-------------CATAATATTGCA--C--AGCTGAAAAGGCCATA--ACTGTATAATcttat
gi|95605 : TTTTTC-TGA---TGCATA------GCA-------------TATCATATTGCA--C--AGCT-AAAAGTCCATA--ACTGT
gi|95609 : TTTTTC-TGG---TGCATACATGTAGCA-------------CATCATATTGCA--C--AGCTGGAAAGTCCATA--AATGTtttat
gi|95613 : TTTCTC-TGG---TGCATA------ACA-------------CATCATATTAGA--C--AGCTGAAAAGTCCATA--ACTGTGTTATtttat
gi|95619 : TTTTTC-TGA---TGCATA------GAA-------------CATCATATTGCA--C--AGATGAAAAGTCCATAATATTGTGT
gi|95620 : TTTTTC-TTG---TGCATA------GCA-------------TATCATATTGCA--C--AGCTTAAAAGTACATT--ATTATATTAT
gi|95624 : TTTTTC-TAG---TGCATA------GCA-------------CAGCATAATGCA--C--AGCTGAAAGGACAATA--ACTGT
gi|95623 : TTTTTC-TAG---TGCATA------GCA-------------CAGCATAATGCA--C--AGCTGAAAGGACAATA--ACTGTtttat
gi|95618 : TTTTTC-AGG---TGCATA------ACA-------------CTTCATAATGCA--C--AAGACAAAAGTCCATA--ATTGTATAATtttat
gi|95615 : TTTTTC-TAG---TGAATA------GCATCTCATCCTGTCACATCATATTGAT--C--AGCTGAAAAGTCAATA--ATTGTAT
gi|95626 : TTTTTC-TTA---TGCATA------TCA-------------CATCATATTCAA--C--AGATAAAAAGTCTATA--
gi|95622 : TCTTTC-TGG---TGCATA------GCA-------------CATC-T-TTATA--CCAAGCTGAAAAGTCCATG--
gi|95625 : TTTTTC-TGA---TGCATA------TCA-------------CATCATATTCAA--C--ATATGAACAGTCCATA--TTTATA
gi|95627 : TTTTC-TGG---TGCATA------GCA-------------TATCATATTGCG--C--AGCTGAAAAGTCCATA--ACTG
gi|95628 : TTTTC-TGG---TGAAAA------GCA-------------CATCTTATTGCA--C--AGCTGAAAAGTCCATA--ACTGTcttta
gi|95629 : TTTTT-TGG---TACAAA------GCT-------------CATCATATTGCA--C--AGCTGAACAATCCATA--GTTGTATtttat
gi|95630 : TTTCATGGCTATGCAGA------GCA-------------CATCGTGTTTCA--C--AGCTGAAAAGTCCATA--CTTGTATAAT
gi|95631 : TTTC-TGG---TGCATA------TCA-------------CATCATTCAACAGTT--AGCTGAAAAGTCCATA--TTTGTATAAT
gi|95632 : C-CGG---TGCATA------GCA-------------CATCATATTGCA--C--AGCTGAAACGTCAATT--ATTGTATTAT
gi|95633 : A-------------TATCATATAGCA--C--AGCTGAAAAGTCCATA--ACTGT
Alignments
lowQualScore : 1 222 444444 7777777777777 11 11
lowQualScore : . ... ...... ............. .. ..
lowQualScore : 4 444 000000 6666666666666 88 88
consensus : TTTTTC-TGG---TGCATA------G-------------CACATCATATTGCA--C--AGCTGAAAAGTCCATAACTGTATAAT
Reference ( family-652 ) : TTTTTC-TGG---TGCATA------G-------------CACATCATATTGCA--C--AGCTGAAAAGTCCATAACTGTATAAT
gi|95604 : TTTTTC-TGG---TGCATA------G-------------CACATCATATTGCA--C--AGCTGAAAAGTCTATAATTGTATAAT
gi|95605 : TTTTTC-TGA---TGCATA------G-------------CATATCATATTGCA--C--AGCT-AAAAGTCCATAACTGT
gi|95606 : TTTTTC-TGG---TGCATA------G-------------ATCATCATATTGCA--C--AGCTGAAAAGTCCATAATTGTATtttat
gi|95607 : TTTTTC-TGT---TGCATA------G-------------AACATCATATTGCA--C--AGCTGAAAAGTCCATAACTGT
gi|95608 : TTTTTC-TGG---TGAATA------G-------------CACATCATATTGCA--C--AGCTGAAAAGTCCATAATTG-ATAGTtttat
gi|95609 : TTTTTC-TGG---TGCATACATGTAG-------------CACATCATATTGCA--C--AGCTGGAAAGTCCATAAATGTat
gi|95610 : TTTTTC-TGG---TGCATG------G-------------CACATCATATTGTA--C--AGCTGAAAAGTCCATACTTGTATAATtttat
gi|95611 : TTTTTC-TGG---TGCATA------G-------------CATATCAGATCGCA--C--AGCTGAAAAGTCCATAATTATATAAT
gi|95612 : TTTTTC-TGG---TGCATA------G-------------CACATCATATTTCA--C--AGCTGAAAAATCCGTTATTGTATAAT
gi|95613 : TTTCTC-TGG---TGCATA------A-------------CACATCATATTAGA--C--AGCTGAAAAGTCCATAACTGTGTTAT
gi|95614 : TTTTTC-TGG---TGAAAA------G-------------CACATCATATTGCA--C--AGCTGGAAAGTCCATAACTGT
gi|95615 : TTTTTC-TAG---TGAATA------GCATCTCATCCTGTCACATCATATTGAT--C--AGCTGAAAAGTCAATAATTGTATcttat
gi|95616 : TTTTTC-TGG---TGTATA------G-------------CACATCGTATTACA--C--AGCTGAAAAGTCCGTAACTGT
gi|95617 : TTTTTC-TGT---TGCA-A------G-------------CACATAATATTGCA--C--AGCTGAAAAGGCCATAACTGTATAATtctattat
gi|95618 : TTTTTC-AGG---TGCATA------A-------------CACTTCATAATGCA--C--AAGACAAAAGTCCATAATTGTATAAT
gi|95619 : TTTTTC-TGA---TGCATA------G-------------AACATCATATTGCA--C--AGATGAAAAGTCCATAA
gi|95620 : TTTTTC-TTG---TGCATA------G-------------CATATCATATTGCA--C--AGCTTAAAAGTACATTATTATATTATtattgtgt
gi|95621 : TTTTTT-TGG---TGCATA------G-------------CCCATCATATTGCA--C--ATCTGAAAATGCCATAATTGTATAAT
gi|95622 : TCTTTC-TGG---TGCATA------G-------------CACATC-T-TTATA--CCAAGCTGAAAAGTCCATGA
gi|95623 : TTTTTC-TAG---TGCATA------G-------------CACAGCATAATGCA--C--AGCTGAAAGGACAATAACTGT
gi|95624 : TTTTTC-TAG---TGCATA------G-------------CACAGCATAATGCA--C--AGCTGAAAGGACAATAACTGTtttat
gi|95625 : TTTTTC-TGA---TGCATA------T-------------CACATCATATTCAA--C--ATATGAACAGTCCATAtttat
gi|95626 : TTTTTC-TTA---TGCATA------T-------------CACATCATATTCAA--C--AGATAAAAAGTCTATAtttata
gi|95627 : TTTTC-TGG---TGCATA------G-------------CATATCATATTGCG--C--AGCTGAAAAGTCCATAACTG
gi|95628 : TTTTC-TGG---TGAAAA------G-------------CACATCTTATTGCA--C--AGCTGAAAAGTCCATAACTGTcttta
gi|95629 : TTTTT-TGG---TACAAA------G-------------CTCATCATATTGCA--C--AGCTGAACAATCCATAGTTGTATtttat
gi|95630 : TTTCATGGCTATGCAGA------G-------------CACATCGTGTTTCA--C--AGCTGAAAAGTCCATACTTGTATAAT
gi|95631 : TTTC-TGG---TGCATA------T-------------CACATCATTCAACAGTT--AGCTGAAAAGTCCATATTTGTATAAT
gi|95632 : C-CGG---TGCATA------G-------------CACATCATATTGCA--C--AGCTGAAACGTCAATTATTGTATTAT
gi|95633 : ATATCATATAGCA--C--AGCTGAAAAGTCCATAACTGT
Alignments
lowQualScore : 1 222 444444 7777777777777 11 11
lowQualScore : . ... ...... ............. .. ..
lowQualScore : 4 444 000000 6666666666666 88 88
consensus : TTTTTC-TGG---TGCATA------G-------------CACATCATATTGCA--C--AGCTGAAAAGTCCATAACTGTATAAT
Reference ( family-652 ) : TTTTTC-TGG---TGCATA------G-------------CACATCATATTGCA--C--AGCTGAAAAGTCCATAACTGTATAAT
gi|95604 : TTTTTC-TGG---TGCATA------G-------------CACATCATATTGCA--C--AGCTGAAAAGTCTATAATTGTATAAT
gi|95605 : TTTTTC-TGA---TGCATA------G-------------CATATCATATTGCA--C--AGCT-AAAAGTCCATAACTGT
gi|95606 : TTTTTC-TGG---TGCATA------G-------------ATCATCATATTGCA--C--AGCTGAAAAGTCCATAATTGTATtttat
gi|95607 : TTTTTC-TGT---TGCATA------G-------------AACATCATATTGCA--C--AGCTGAAAAGTCCATAACTGT
gi|95608 : TTTTTC-TGG---TGAATA------G-------------CACATCATATTGCA--C--AGCTGAAAAGTCCATAATTG-ATAGTtttat
gi|95609 : TTTTTC-TGG---TGCATACATGTAG-------------CACATCATATTGCA--C--AGCTGGAAAGTCCATAAATGTat
gi|95610 : TTTTTC-TGG---TGCATG------G-------------CACATCATATTGTA--C--AGCTGAAAAGTCCATACTTGTATAATtttat
gi|95611 : TTTTTC-TGG---TGCATA------G-------------CATATCAGATCGCA--C--AGCTGAAAAGTCCATAATTATATAAT
gi|95612 : TTTTTC-TGG---TGCATA------G-------------CACATCATATTTCA--C--AGCTGAAAAATCCGTTATTGTATAAT
gi|95613 : TTTCTC-TGG---TGCATA------A-------------CACATCATATTAGA--C--AGCTGAAAAGTCCATAACTGTGTTAT
gi|95614 : TTTTTC-TGG---TGAAAA------G-------------CACATCATATTGCA--C--AGCTGGAAAGTCCATAACTGT
gi|95615 : TTTTTC-TAG---TGAATA------GCATCTCATCCTGTCACATCATATTGAT--C--AGCTGAAAAGTCAATAATTGTATcttat
gi|95616 : TTTTTC-TGG---TGTATA------G-------------CACATCGTATTACA--C--AGCTGAAAAGTCCGTAACTGT
gi|95617 : TTTTTC-TGT---TGCA-A------G-------------CACATAATATTGCA--C--AGCTGAAAAGGCCATAACTGTATAATtctattat
gi|95618 : TTTTTC-AGG---TGCATA------A-------------CACTTCATAATGCA--C--AAGACAAAAGTCCATAATTGTATAAT
gi|95619 : TTTTTC-TGA---TGCATA------G-------------AACATCATATTGCA--C--AGATGAAAAGTCCATAA
gi|95620 : TTTTTC-TTG---TGCATA------G-------------CATATCATATTGCA--C--AGCTTAAAAGTACATTATTATATTATtattgtgt
gi|95621 : TTTTTT-TGG---TGCATA------G-------------CCCATCATATTGCA--C--ATCTGAAAATGCCATAATTGTATAAT
gi|95622 : TCTTTC-TGG---TGCATA------G-------------CACATC-T-TTATA--CCAAGCTGAAAAGTCCATGA
gi|95623 : TTTTTC-TAG---TGCATA------G-------------CACAGCATAATGCA--C--AGCTGAAAGGACAATAACTGT
gi|95624 : TTTTTC-TAG---TGCATA------G-------------CACAGCATAATGCA--C--AGCTGAAAGGACAATAACTGTtttat
gi|95625 : TTTTTC-TGA---TGCATA------T-------------CACATCATATTCAA--C--ATATGAACAGTCCATAtttat
gi|95626 : TTTTTC-TTA---TGCATA------T-------------CACATCATATTCAA--C--AGATAAAAAGTCTATAtttata
gi|95627 : TTTTC-TGG---TGCATA------G-------------CATATCATATTGCG--C--AGCTGAAAAGTCCATAACTG
gi|95628 : TTTTC-TGG---TGAAAA------G-------------CACATCTTATTGCA--C--AGCTGAAAAGTCCATAACTGTcttta
gi|95629 : TTTTT-TGG---TACAAA------G-------------CTCATCATATTGCA--C--AGCTGAACAATCCATAGTTGTATtttat
gi|95630 : TTTCATGGCTATGCAGA------G-------------CACATCGTGTTTCA--C--AGCTGAAAAGTCCATACTTGTATAAT
gi|95631 : TTTC-TGG---TGCATA------T-------------CACATCATTCAACAGTT--AGCTGAAAAGTCCATATTTGTATAAT
gi|95632 : C-CGG---TGCATA------G-------------CACATCATATTGCA--C--AGCTGAAACGTCAATTATTGTATTAT
gi|95633 : ATATCATATAGCA--C--AGCTGAAAAGTCCATAACTGT
blockSeqs : A CTA CATGTA CATCTCATCCTGT GT CA
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blockSeqCons :
originalCons : TTTTTC-TGG---TGCATA------G-------------CACATCATATTGCA--C--AGCTGAAAAGTCCATAACTGTATAAT
finalCons : TTTTTC-TGG---TGCATA------G-------------CACATCATATTGCA--C--AGCTGAAAAGTCCATAACTGTATAAT
Alignments
lowQualScore : 1 222 444444 7777777777777 11 11
lowQualScore : . ... ...... ............. .. ..
lowQualScore : 4 444 000000 6666666666666 88 88
consensus : TTTTTC-TGG---TGCATA------G-------------CACATCATATTGCA--C--AGCTGAAAAGTCCATAACTGTATAAT
Reference ( family-652 ) : TTTTTC-TGG---TGCATA------G-------------CACATCATATTGCA--C--AGCTGAAAAGTCCATAACTGTATAAT
gi|95604 : TTTTTC-TGG---TGCATA------G-------------CACATCATATTGCA--C--AGCTGAAAAGTCTATAATTGTATAAT
gi|95605 : TTTTTC-TGA---TGCATA------G-------------CATATCATATTGCA--C--AGCT-AAAAGTCCATAACTGT
gi|95606 : TTTTTC-TGG---TGCATA------G-------------ATCATCATATTGCA--C--AGCTGAAAAGTCCATAATTGTATtttat
gi|95607 : TTTTTC-TGT---TGCATA------G-------------AACATCATATTGCA--C--AGCTGAAAAGTCCATAACTGT
gi|95608 : TTTTTC-TGG---TGAATA------G-------------CACATCATATTGCA--C--AGCTGAAAAGTCCATAATTG-ATAGTtttat
gi|95609 : TTTTTC-TGG---TGCATACATGTAG-------------CACATCATATTGCA--C--AGCTGGAAAGTCCATAAATGTat
gi|95610 : TTTTTC-TGG---TGCATG------G-------------CACATCATATTGTA--C--AGCTGAAAAGTCCATACTTGTATAATtttat
gi|95611 : TTTTTC-TGG---TGCATA------G-------------CATATCAGATCGCA--C--AGCTGAAAAGTCCATAATTATATAAT
gi|95612 : TTTTTC-TGG---TGCATA------G-------------CACATCATATTTCA--C--AGCTGAAAAATCCGTTATTGTATAAT
gi|95613 : TTTCTC-TGG---TGCATA------A-------------CACATCATATTAGA--C--AGCTGAAAAGTCCATAACTGTGTTAT
gi|95614 : TTTTTC-TGG---TGAAAA------G-------------CACATCATATTGCA--C--AGCTGGAAAGTCCATAACTGT
gi|95615 : TTTTTC-TAG---TGAATA------GCATCTCATCCTGTCACATCATATTGAT--C--AGCTGAAAAGTCAATAATTGTATcttat
gi|95616 : TTTTTC-TGG---TGTATA------G-------------CACATCGTATTACA--C--AGCTGAAAAGTCCGTAACTGT
gi|95617 : TTTTTC-TGT---TGCA-A------G-------------CACATAATATTGCA--C--AGCTGAAAAGGCCATAACTGTATAATtctattat
gi|95618 : TTTTTC-AGG---TGCATA------A-------------CACTTCATAATGCA--C--AAGACAAAAGTCCATAATTGTATAAT
gi|95619 : TTTTTC-TGA---TGCATA------G-------------AACATCATATTGCA--C--AGATGAAAAGTCCATAA
gi|95620 : TTTTTC-TTG---TGCATA------G-------------CATATCATATTGCA--C--AGCTTAAAAGTACATTATTATATTATtattgtgt
gi|95621 : TTTTTT-TGG---TGCATA------G-------------CCCATCATATTGCA--C--ATCTGAAAATGCCATAATTGTATAAT
gi|95622 : TCTTTC-TGG---TGCATA------G-------------CACATC-T-TTATA--CCAAGCTGAAAAGTCCATGA
gi|95623 : TTTTTC-TAG---TGCATA------G-------------CACAGCATAATGCA--C--AGCTGAAAGGACAATAACTGT
gi|95624 : TTTTTC-TAG---TGCATA------G-------------CACAGCATAATGCA--C--AGCTGAAAGGACAATAACTGTtttat
gi|95625 : TTTTTC-TGA---TGCATA------T-------------CACATCATATTCAA--C--ATATGAACAGTCCATAtttat
gi|95626 : TTTTTC-TTA---TGCATA------T-------------CACATCATATTCAA--C--AGATAAAAAGTCTATAtttata
gi|95627 : TTTTC-TGG---TGCATA------G-------------CATATCATATTGCG--C--AGCTGAAAAGTCCATAACTG
gi|95628 : TTTTC-TGG---TGAAAA------G-------------CACATCTTATTGCA--C--AGCTGAAAAGTCCATAACTGTcttta
gi|95629 : TTTTT-TGG---TACAAA------G-------------CTCATCATATTGCA--C--AGCTGAACAATCCATAGTTGTATtttat
gi|95630 : TTTCATGGCTATGCAGA------G-------------CACATCGTGTTTCA--C--AGCTGAAAAGTCCATACTTGTATAAT
gi|95631 : TTTC-TGG---TGCATA------T-------------CACATCATTCAACAGTT--AGCTGAAAAGTCCATATTTGTATAAT
gi|95632 : C-CGG---TGCATA------G-------------CACATCATATTGCA--C--AGCTGAAACGTCAATTATTGTATTAT
gi|95633 : ATATCATATAGCA--C--AGCTGAAAAGTCCATAACTGT