lowQualScore : 3333333333333333 11
lowQualScore : 1 444444 444 1 1 5 1 1 11 2 0 444 6666666666666666 6 8 3 666666 22 2 2 8888 1 1 1
lowQualScore : . ...... ... . . . . . .. . . ... ................ . . . ...... .. . . .... . . .
lowQualScore : 5 333333 333 5 9 5 5 5 88 5 4 666 6666666666666666 2 9 6 444444 22 2 4 2222 1 4 4
consensus : AGG-ACATAT------TAAC-A-CAAAATGATATTCATCTTCNATGTC-GT-TAAA-GTNACACA--AAGTACA-ATANC--G--CA-AGTTNC-GTTCNATTC------TG--TT-CTGT-GCATAACGACCGGTTTCAATTTTTAACTGAT
Reference ( gi|33497 ) : AGG-ACATAT------TAAC-A-CAAAATGGTATTCATCTTCTATGTC-GT-TAAA-GTTACATA--GAGTACA-ATAAC--G--CA-AGTTAC-GTTCAATTC------TG--TT-CTGT-GCATAACGACCGGTTTCAACTTTCAACTGAT
gi|33498 : AGG-ACATAG------TAAC-A-CAAAATGGTATTCATCTTCTATGTC-GT-TAAA-GTTACATA--GAGTACA-ATAAC--G--CA-AGTTAC-GTTCAATTC------TG--TT-CTGT-GCATAACGACCGGTTTCAACTTTCAACTGAT
gi|33499 : AGG-ACATAG------TAAC-A-CAAAATGGTATTCATCTTCTATGTC-GT-TAAA-GTTACATA--GAGTACA-ATAAC--G--CA-AGTTAT-GTTCAATTC------TG--TT-CTGT-GCATAACGACCGGTTTCAACTTTCAACTGAT
gi|33501 : AGG-ACATAT------TAAT-A-CAAAATGGTATTCATCTCCTATGTC-GT-TAAA-GTTACATA--GAGTACA-ATAGC--G--CA-AGTTAC-GTTCAATTC------TG--TT-CTGT-GCATAACGACTGGTTTCAACTTTCAACTGAT
gi|33505 : AGG-ACATAT------TAAC-A-CAAAATGGTATTCATCTTCTAAGTC-GT-TAAA-GTTTTATA--GAGTGCA-ATAAC--GTTC--AGTTAC-GTTCAATTC------GG--TT-CTGT-GCATAACGACCGGTTTTAACTTTCAACTGAT
gi|33503 : AGG-GCATAT------TA-C-A-CAAAATGGTATTCATCTTCTATGTC-GT-TGAA-GTGATATA--GAGTACA-AAAAC--G--CA-AATAAC-GTTCAATTC------TG--TT-CTGA-GCATGACGACCGGTTTCAATTTTTAACCGAT
gi|33500 : AGG-ACATAT------TAAC-A-CAAAATGATATTCATCTTCTATGTA-GT-TTAA-GTGACATA--AAATACA-ATAAC--G--CA-AATTAC-GTTCCATTC------TG--TT-CTGA-GCATAACGACCGAATTCAATTTTTAACTGAT
gi|33508 : AGG-GCATAT------TAAT-A-CAAAATGATATTCATCTTCTTTGTC-GTGTAGA--TGGCATA--AAATACA-ATAAC--G--CA-AATTAC-GTTCCATTC------TG--TA-CTGA-GCATAACGACCGGTTTTAATTTTTAGCTGAT
gi|33482 : AGG-ACATAT------TATC-A-CACAATGATATTCATCTTCAATGTC-AT-TAAG-GTGACACA--AAGTACA-TTTTC----------TTTCGGTTCTATCT------TGGTTT-CTGT-GT----CTACTTGTTTCAATATTTAATTGAT
gi|33506 : aaAGG-ACATAT------TAAC-A-CAAAATAATATTCATCGTCATTGTCGGT-TAAA-GTTACATA--GAGTGCA-
gi|33486 : AGG-ACATATATGTATTATC-A-CAAAATGATATTAATCTTCAATGTC-AT-TGAG-GTAACACA--AAGTACA-TTTTC----------TTTCGGTTCTATCT------TGGTTT-CTGT-GT----CAACCCGTTTCAATTTTTAATTGAT
gi|33484 : aaAGG-ACATAT------TATC-A-CAATATGATACTCATTTTCAATGTC-GT-TAGG-GTAACACA--CAGTACA-
gi|33483 : aaAGG-ACATA-------TAATGA-TAAAATGATACTCATCTTTAATGTC-CT-TAAG-GTGACACA--AAGTACA-TTTTC----------TTCCAGTTCTATCT------TG--GT-TTTT-GCGT--CTACTTGTTTCAATATTTAATTGATttttctttcagttttatcttggtttctgttgtctgcctgttttaatatttaattgat
gi|33488 : aaAGG-ACATCT------TATC-A-CGAAATGATACTCATCTTCAATGTC-AT-TAAG-GTGTCTCA--AAGTAC---------------AGTTCC-TTTCAGTTC------TA--TC-TTG
gi|33502 : aaAGG-ACAGAT------TAAA-A-TAAAGTGATATTCATCTTCTATATC-GT-TTTT-GTTAC--A--AAGCACACAT-------------TTCC-TTTCATTTCTAACTATG--TTCCTGT-G----ACGTCCAGTTTCgtttccgtgtctacc
gi|33490 : AGG-ACATAA------CAAA-A-TAAAATGATATTCATCTTCTACATC-GT-CTAA-GGTACATAATGAGCAtatattt
gi|33485 : aaAGG-AAATAT------TATA-A-CAAAATGATACTCATCTTCAATGTC-AT-TAAT-GTGCCACA--AACTACA-TTTTC----------TTTCGGTCCTATCT------TGGTTT-CTGT-GTTT----GTCTGTTTCAATATTTAATTGATttttctctgacttctttcaatattcatatgtctaactgtttcaat
gi|33504 : aaAGA-ACATAT------TAAA-A-CAAAGTGATACTCATCTTCAATATC-AT-TA----TTAT--------TACA-A-ATCTGG--CATAGT--C-GTTCATTTC------T---TT-CTAT-
gi|33489 : AGG-ACAT--------TATC-A-CAAAATGATACTCTTCTGCAATGTC-AT-AAAG-GTGGCACA--AAGTAC--AT-------------TTTC-TTTCAGTTC------TA--TC-TTGT-tctttctatcccatatctccctgtttcaattcctaat
gi|33507 : aaAGA-ACATTT------TAAA-A-CAAAGTGATACTCATCTTCAATATC-AT-TA----TTAT--------TACA-A-ATCTGG--CATAGTT----TTTCATTT------TT--TT-CTATCCCATATCTCCCTTTTTCAATTCTTAAttgtgggttt
gi|33495 : AGGTACATGT------CATG-A-CAGCATGAAATTCATCTTCTATTTC-TT-GTGA-GTTACACA--AAATACA-t
gi|33491 : aaAGG-ACAAAC-------AAT-AACAAAATGATATTCGTCTTCCACTTC-AT-Ttactctatcagcataagcaacatttgtatgtctccctgtttcaaca
gi|33493 : aaGG-GCAAAT------AAGT-A-TGAAATGGTATTCGTCTTCAATGTC-AT-TTAA-GTCACAcatctgacaatatatacattttctatctgatctatctaaatttctat
gi|33494 : aaatGG-GCAAAT------AAGT-A-TGAAATGGTATTCGTCTTCGATGTC-AT-TTAT-GTCACAacataaacattttctttggtctcttgcaattttttgatgtcgtcctgtgtcaatagctagtttat
gi|33510 : aaatGG-ACATAC------CAGC-A-GAAAGTGATATTCACTTTCAACATT-AT-TCAT-GTTACAacataaacattttctttggtctcttgcaattttttgatgtcgtcctgtttctatagctagtttat
gi|33509 : GG-ACATAC------AAGC-A-GAATGTGATATTCACTTTCAACGTT-AT-TAAA-TTTACatacagacactttctatcttttctgtctgtatttgtgtatatacccattttaat
gi|33487 : G-ACATAT------TATA-A-CAACATGATACTCATCTTCCATATC-A---AAAGGTGACACA--ATGTACA-TTTTC---------TTTCT-GTTCTATCT------TGGTTT-CTGT-GT----CTACCTGTTTCAATATTTAATTGATtatttagacactttctatcttttctgtctgtatttgtgtatctacccgtttcgat
gi|33511 : aaat-ACATAT------TAAC-A-GAAAATGATATTCATCTTCTATGTC-GT-TGAA-GTTACATA--AAATACA-ATAAC--G--CA-AATTAC-GTTACATTC------TG--TT-CTGA-GCATAACGGCCGGTTTAAATTTTTAACCGAT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|33492 ): AAAGGACAAACAATAACAAAATGATATTCGTCTTCCACTACATTCATCTGACAATATATACATTTTCTATCTGATCTATCTATATTTCTATAACGACCCTCTTCAAT
Unaligned ( gi|33496 ): AAAGGACAACCTATGATAAAATGAAACTCGTCTTCAAGTATATTACAGTATTTACATTTTCTCTCATCAAGGTCGACCCTGTTTCTTGTCTATCGACCTGATTCAATCTCTAAT
Alignments
lowQualScore : 3333333333 1 11
lowQualScore : 1 444444 222 2 1 1 3 22 2 1 3333 55555 8888888888 2 5 22 1 55 44444 1 3 3 66 1 2
lowQualScore : . ...... ... . . . . .. . . .... ..... .......... . . .. . .. ..... . . . .. . .
lowQualScore : 4 111111 999 9 0 5 0 44 5 5 7777 99999 1111111111 9 2 66 0 77 88888 9 8 4 88 4 7
consensus : AGG-ACATAT------TAAC-A-CAAAATGATATTCATCTTCNATGTC-GT-TAAA-GTNA-CACAAA----GTACA-ATNNC--G--CA-AGTTNC-GTT--CNATTCTG--T-----T-CTGT-GCATAACGACCGGTTTCAATTTTTAACTGAT
Reference ( family-647 ) : AGG-ACATAT------TAAC-A-CAAAATGATATTCATCTTCNATGTC-GT-TAAA-GTNA-CACAAA----GTACA-ATANC--G--CA-AGTTNC-GTT--CNATTCTG--T-----T-CTGT-GCATAACGACCGGTTTCAATTTTTAACTGAT
gi|33482 : AGG-ACATAT------TATC-A-CACAATGATATTCATCTTCAATGTC-AT-TAAG-GTGA-CACAAA----GTACA-TTTTC----------TTTCGGTT--CTATCTTGGTT-----T-CTGT-GT----CTACTTGTTTCAATATTTAATTGAT
gi|33483 : aaAGG-ACATAT-------AATGA-TAAAATGATACTCATCTTTAATGTC-CT-TAAG-GTGA-CACAAA----GTACA-TTTTC----------TTCCAGTT--CTATCTTG--G-----T-TTTT-GCGT--CTACTTGTTTCAATATTTAATTGAT
gi|33484 : aaAGG-ACATAT------TATC-A-CAATATGATACTCATTTTCAATGTC-GT-TAGG-GTAA-CACACA----GTACA-TTTTC----------TTTCAGTT--TTATCTTGGTT-----T-CTGT----TGTCTGCCTGTTTTAATATTTAATTGAT
gi|33485 : aaAGG-AAATAT------TATA-A-CAAAATGATACTCATCTTCAATGTC-AT-TAAT-GTGC-CACAAA----CTACA-TTTTC----------TTTCGGTC--CTATCTTGGTT-----T-CTGT-GTTT----GTCTGTTTCAATATTTAATTGAT
gi|33486 : aaAGG-ACATATATGTATTATC-A-CAAAATGATATTAATCTTCAATGTC-AT-TGAG-GTAA-CACAAA----GTACA-TTTTC----------TTTCGGTT--CTATCTTGGTT-----T-CTGT-GT----CAACCCGTTTCAATTTTTAATTGAT
gi|33487 : aaG-ACATAT------TATA-A-CAACATGATACTCATCTTCCATATC-A---AAAGGTGA-CACAAT----GTACA-TTTTC----------TTTCTGTT--CTATCTTGGTT-----T-CTGT-GT----CTACCTGTTTCAATATTTAATTGAT
gi|33488 : aaatAGG-ACATCT------TATC-A-CGAAATGATACTCATCTTCAATGTC-AT-TAAG-GTGT-CTCAAA----GTACA-GTTCC----------TTTCAGTT--CTATCTTGGTT-----T-CCGT-G
gi|33489 : aaAGG-ACAT--------TATC-A-CAAAATGATACTCTTCTGCAATGTC-AT-AAAG-GTGG-CACAAA----GTACA-TTTTC----------TTTCAGTT--CTATCTTG--T-----T--TGT-Gtctacc
gi|33490 : aaAGG-ACATAA------CAAA-A-TAAAATGATATTCATCTTCTACATC-GTCTAAG-GT-A-CATAAggttt
gi|33491 : aaAGG-ACAAAC-------AAT-AACAAAATGATATTCGTCTTCCACTTC-AT-Ttgagcattttctctgacttctttcaatattcatatgtctaactgtttcaat
gi|33492 : aaAGG-ACAAAC-------AAT-AACAAAATGATATTCGTCTTCCAcatctgacaatatatacattttctatctgatctatctaaatttctat
gi|33494 : aaGG-GCAAAT------AAGT-A-TGAAATGGTATTCGTCTTCGATGTC-AT-TTAT-GTCA-CActacattcatctgacaatatatacattttctatctgatctatctatatttctataacgaccctcttcaat
gi|33495 : aaatAGGTACATGT------CATG-A-CAGCATGAAATTCATCTTCTATTTC-TT-GTGA-GTTA-CACAAA----ATACA-acataaacattttctttggtctcttgcaattttttgatgtcgtcctgtttctatagctagtttat
gi|33497 : aaAGG-ACATAT------TAAC-A-CAAAATGGTATTCATCTTCTATGTC-GT-TAAA-GTTA-CATAGA----GTACA-ATAAC--G--CA-AGTTAC-GTT--CAATTCTG--T-----T-CTGT-GCATAACGACCGGTTTCAACTTTCAACTGATtactctatcagcataagcaacatttgtatgtctccctgtttcaaca
gi|33498 : AGG-ACATAG------TAAC-A-CAAAATGGTATTCATCTTCTATGTC-GT-TAAA-GTTA-CATAGA----GTACA-ATAAC--G--CA-AGTTAC-GTT--CAATTCTG--T-----T-CTGT-GCATAACGACCGGTTTCAACTTTCAACTGAT
gi|33499 : AGG-ACATAG------TAAC-A-CAAAATGGTATTCATCTTCTATGTC-GT-TAAA-GTTA-CATAGA----GTACA-ATAAC--G--CA-AGTTAT-GTT--CAATTCTG--T-----T-CTGT-GCATAACGACCGGTTTCAACTTTCAACTGAT
gi|33500 : AGG-ACATAT------TAAC-A-CAAAATGATATTCATCTTCTATGTA-GT-TTAA-GTGA-CATAAA----ATACA-ATAAC--G--CA-AATTAC-GTT--CCATTCTG--T-----T-CTGA-GCATAACGACCGAATTCAATTTTTAACTGAT
gi|33501 : AGG-ACATAT------TAAT-A-CAAAATGGTATTCATCTCCTATGTC-GT-TAAA-GTTA-CATAGA----GTACA-ATAGC--G--CA-AGTTAC-GTT--CAATTCTG--T-----T-CTGT-GCATAACGACTGGTTTCAACTTTCAACTGAT
gi|33502 : AGG-ACAGAT------TAAA-A-TAAAGTGATATTCATCTTCTATATC-GT-TTTT-GTT---ACAAA----GCACACATTTC-----C----TTTC-ATTTCTAACTATG--T-----TCCTGT-G----ACGTCCAGTTTCTATATTT
gi|33503 : AGG-GCATAT------TA-C-A-CAAAATGGTATTCATCTTCTATGTC-GT-TGAA-GTGA-TATAGA----GTACA-AAAAC--G--CA-AATAAC-GTT--CAATTCTG--T-----T-CTGA-GCATGACGACCGGTTTCAATTTTTAACCGAT
gi|33504 : AGA-ACATAT------TAAA-A-CAAAGTGATACTCATCTTCAATATC-AT-TA----TTATTACAAATCTGGCATA-GTCGT--T--CA---TTTC-TTT--CTATTCT---T-----T-CTATCCCATATCTCCCTGTTTCAATTCCTAA
gi|33505 : AGG-ACATAT------TAAC-A-CAAAATGGTATTCATCTTCTAAGTC-GT-TAAA-GTTT-TATAGA----GTGCA-ATAAC--GTTC--AGTTAC-GTT--CAATTCGG--T-----T-CTGT-GCATAACGACCGGTTTTAACTTTCAACTGATt
gi|33506 : AGG-ACATAT------TAAC-A-CAAAATAATATTCATCGTCATTGTCGGT-TAAA-GTTA-CATAGA----GTGCA-
gi|33507 : AGA-ACATTT------TAAA-A-CAAAGTGATACTCATCTTCAATATC-AT-TA----TTA-T----------TACA-A-ATCTGG--CATAGTT----TT--TCATTTTT--T-----T-CTATCCCATATCTCCCTTTTTCAATTCTTAA
gi|33508 : AGG-GCATAT------TAAT-A-CAAAATGATATTCATCTTCTTTGTC-GTGTAGA--TGG-CATAAA----ATACA-ATAAC--G--CA-AATTAC-GTT--CCATTCTG--T-----A-CTGA-GCATAACGACCGGTTTTAATTTTTAGCTGATt
gi|33509 : GG-ACATAC------AAGC-A-GAATGTGATATTCACTTTCAACGTT-AT-TAAA-TTTA-C
gi|33510 : GG-ACATAC------CAGC-A-GAAAGTGATATTCACTTTCAACATT-AT-TCAT-GTTA-C----A----ATACA---GAC--A--C----TTTC-TAT--CTTTTCTG--TCTGTAT-TTGT-GTATA--TACCCATTTTAATtatttagacactttctatcttttctgtctgtatttgtgtatctacccgtttcgat
gi|33511 : -ACATAT------TAAC-A-GAAAATGATATTCATCTTCTATGTC-GT-TGAA-GTTA-CATAAA----ATACA-ATAAC--G--CA-AATTAC-GTT--ACATTCTG--T-----T-CTGA-GCATAACGGCCGGTTTAAATTTTTAACCGAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|33493 ): AAATGGGCAAATAAGTATGAAATGGTATTCGTCTTCAATGTCATTTAAGTCACAACATAAACATTTTCTTTGGTCTCTTGCAATTTTTTGATGTCGTCCTGTGTCAATAGCTAGTTTAT
Unaligned ( gi|33496 ): AAAGGACAACCTATGATAAAATGAAACTCGTCTTCAAGTATATTACAGTATTTACATTTTCTCTCATCAAGGTCGACCCTGTTTCTTGTCTATCGACCTGATTCAATCTCTAAT
Alignments
lowQualScore : 33333333 1 11
lowQualScore : 1 444444 333 1 1 1 3 22 2 1 1 0 3333 66 22 77777777 2 3 22 1 44 66666 1 1 3 3 77 2 3
lowQualScore : . ...... ... . . . . .. . . . . .... .. .. ........ . . .. . .. ..... . . . . .. . .
lowQualScore : 5 333333 111 5 0 5 0 55 5 5 5 7 4444 11 00 99999999 7 9 44 0 33 11111 7 7 5 4 99 7 9
consensus : AGG-ACATAT------TAAC-A-CAAAATGATATTCATCTTCNATGTC-GT-TAAA-GTNA-C-ACAAA----GTACA-NTNNCG--CA-A-TTNC-GTT--CNATTCTG--T-----T-C-TGT-GCATAACGACCNGTTTCAATTTTTAACTGAT
Reference ( family-647 ) : AGG-ACATAT------TAAC-A-CAAAATGATATTCATCTTCNATGTC-GT-TAAA-GTNA-C-ACAAA----GTACA-ATNNCG--CA-AGTTNC-GTT--CNATTCTG--T-----T-C-TGT-GCATAACGACCGGTTTCAATTTTTAACTGAT
gi|33482 : AGG-ACATAT------TATC-A-CACAATGATATTCATCTTCAATGTC-AT-TAAG-GTGA-C-ACAAA----GTACA-TTTTC--------TTTCGGTT--CTATCTTGGTT-----T-C-TGT-GT----CTACTTGTTTCAATATTTAATTGAT
gi|33483 : aaAGG-ACATAT-------AATGA-TAAAATGATACTCATCTTTAATGTC-CT-TAAG-GTGA-C-ACAAA----GTACA-TTTTC--------TTCCAGTT--CTATCTTG--G-----T-T-TTT-GCGT--CTACTTGTTTCAATATTTAATTGAT
gi|33484 : aaAGG-ACATAT------TATC-A-CAATATGATACTCATTTTCAATGTC-GT-TAGG-GTAA-C-ACACA----GTACA-TTTTC--------TTTCAGTT--TTATCTTGGTT-----T-C-TGT----TGTCTGCCTGTTTTAATATTTAATTGAT
gi|33485 : aaAGG-AAATAT------TATA-A-CAAAATGATACTCATCTTCAATGTC-AT-TAAT-GTGC-C-ACAAA----CTACA-TTTTC--------TTTCGGTC--CTATCTTGGTT-----T-C-TGT-GTTT----GTCTGTTTCAATATTTAATTGAT
gi|33486 : aaAGG-ACATATATGTATTATC-A-CAAAATGATATTAATCTTCAATGTC-AT-TGAG-GTAA-C-ACAAA----GTACA-TTTTC--------TTTCGGTT--CTATCTTGGTT-----T-C-TGT-GT----CAACCCGTTTCAATTTTTAATTGAT
gi|33487 : aaG-ACATAT------TATA-A-CAACATGATACTCATCTTCCATATC-A---AAAGGTGA-C-ACAAT----GTACA-TTTTC--------TTTCTGTT--CTATCTTGGTT-----T-C-TGT-GT----CTACCTGTTTCAATATTTAATTGAT
gi|33488 : aaatAGG-ACATCT------TATC-A-CGAAATGATACTCATCTTCAATGTC-AT-TAAG-GTGT-C-TCAAA----GTACA-GTTCC--------TTTCAGTT--CTATCTTGGTT-----T-C-CGT-G
gi|33489 : aaAGG-ACAT--------TATC-A-CAAAATGATACTCTTCTGCAATGTC-AT-AAAG-GTGG-C-ACAAA----GTACA-TTTTC--------TTTCAGTT--CTATCTTG--T-----T---TGT-Gtctacc
gi|33490 : aaAGG-ACATAA------CAAA-A-TAAAATGATATTCATCTTCTACATC-GTCTAAG-GT-A-C-ATAAT----GAGCA-TTTTCT--CT-GACTTC-TTT--CAA---TA--T-----T-CATAT-GTCTAA----CTGTTTCAATggttt
gi|33491 : aaAGG-ACAAAC-------AAT-AACAAAATGATATTCGTCTTCCACTTC-AT-T
gi|33494 : aaGG-GCAAAT------AAGT-A-TGAAATGGTATTCGTCTTCGATGTC-AT-TTAT-GTCA-C-Acatctgacaatatatacattttctatctgatctatctaaatttctat
gi|33495 : aaatAGGTACATGT------CATG-A-CAGCATGAAATTCATCTTCTATTTC-TT-GTGA-GTTA-C-ACAAA----ATACA-acataaacattttctttggtctcttgcaattttttgatgtcgtcctgtttctatagctagtttat
gi|33497 : aaAGG-ACATAT------TAAC-A-CAAAATGGTATTCATCTTCTATGTC-GT-TAAA-GTTA-C-ATAGA----GTACA-ATAACG--CA-AGTTAC-GTT--CAATTCTG--T-----T-C-TGT-GCATAACGACCGGTTTCAACTTTCAACTGATtactctatcagcataagcaacatttgtatgtctccctgtttcaaca
gi|33498 : AGG-ACATAG------TAAC-A-CAAAATGGTATTCATCTTCTATGTC-GT-TAAA-GTTA-C-ATAGA----GTACA-ATAACG--CA-AGTTAC-GTT--CAATTCTG--T-----T-C-TGT-GCATAACGACCGGTTTCAACTTTCAACTGAT
gi|33499 : AGG-ACATAG------TAAC-A-CAAAATGGTATTCATCTTCTATGTC-GT-TAAA-GTTA-C-ATAGA----GTACA-ATAACG--CA-AGTTAT-GTT--CAATTCTG--T-----T-C-TGT-GCATAACGACCGGTTTCAACTTTCAACTGAT
gi|33500 : AGG-ACATAT------TAAC-A-CAAAATGATATTCATCTTCTATGTA-GT-TTAA-GTGA-C-ATAAA----ATACA-ATAACG--CA-AATTAC-GTT--CCATTCTG--T-----T-C-TGA-GCATAACGACCGAATTCAATTTTTAACTGAT
gi|33501 : AGG-ACATAT------TAAT-A-CAAAATGGTATTCATCTCCTATGTC-GT-TAAA-GTTA-C-ATAGA----GTACA-ATAGCG--CA-AGTTAC-GTT--CAATTCTG--T-----T-C-TGT-GCATAACGACTGGTTTCAACTTTCAACTGAT
gi|33502 : AGG-ACAGAT------TAAA-A-TAAAGTGATATTCATCTTCTATATC-GT-TTTT-GTT----ACAAA----GCACACATTTC---C----TTTC-ATTTCTAACTATG--T-----TCC-TGT-G----ACGTCCAGTTTCTATATTT
gi|33503 : AGG-GCATAT------TA-C-A-CAAAATGGTATTCATCTTCTATGTC-GT-TGAA-GTGA-T-ATAGA----GTACA-AAAACG--CA-AATAAC-GTT--CAATTCTG--T-----T-C-TGA-GCATGACGACCGGTTTCAATTTTTAACCGAT
gi|33504 : AGA-ACATAT------TAAA-A-CAAAGTGATACTCATCTTCAATATC-AT-TA----TTATT-ACAAATCTGGCATA-GTCGTT--CA---TTTC-TTT--CTATTCT---T-----T-C-TATCCCATATCTCCCTGTTTCAATTCCTAA
gi|33505 : AGG-ACATAT------TAAC-A-CAAAATGGTATTCATCTTCTAAGTC-GT-TAAA-GTTT-T-ATAGA----GTGCA-ATAACGTTCA--GTTAC-GTT--CAATTCGG--T-----T-C-TGT-GCATAACGACCGGTTTTAACTTTCAACTGATt
gi|33506 : AGG-ACATAT------TAAC-A-CAAAATAATATTCATCGTCATTGTCGGT-TAAA-GTTA-C-ATAGA----GTGCA-
gi|33507 : AGA-ACATTT------TAAA-A-CAAAGTGATACTCATCTTCAATATC-AT-TATT-ATTA-C-A------------A-ATCTGG--CATAGTT----TT--TCATTTTT--T-----T-C-TATCCCATATCTCCCTTTTTCAATTCTTAA
gi|33508 : AGG-GCATAT------TAAT-A-CAAAATGATATTCATCTTCTTTGTC-GTGTAGA--TGG-C-ATAAA----ATACA-ATAACG--CA-AATTAC-GTT--CCATTCTG--T-----A-C-TGA-GCATAACGACCGGTTTTAATTTTTAGCTGATt
gi|33509 : GG-ACATAC------AAGC-A-GAATGTGATATTCACTTTCAACGTT-AT-TAAA-TTTA-CTATTTA----G-ACA-CTTTC---TA----TCT-TTT--CTG-TCTG--TA----T-T-TGT-GTAT--CTACCCGTTTCGAT
gi|33510 : GG-ACATAC------CAGC-A-GAAAGTGATATTCACTTTCAACATT-AT-TCAT-GTTA-C-----A----ATACA---GACA--C----TTTC-TAT--CTTTTCTG--TCTGTAT-T-TGT-GTATA--TACCCATTTTAAT
gi|33511 : -ACATAT------TAAC-A-GAAAATGATATTCATCTTCTATGTC-GT-TGAA-GTTA-C-ATAAA----ATACA-ATAACG--CA-AATTAC-GTT--ACATTCTG--T-----T-C-TGA-GCATAACGGCCGGTTTAAATTTTTAACCGAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|33492 ): AAAGGACAAACAATAACAAAATGATATTCGTCTTCCACTACATTCATCTGACAATATATACATTTTCTATCTGATCTATCTATATTTCTATAACGACCCTCTTCAAT
Unaligned ( gi|33493 ): AAATGGGCAAATAAGTATGAAATGGTATTCGTCTTCAATGTCATTTAAGTCACAACATAAACATTTTCTTTGGTCTCTTGCAATTTTTTGATGTCGTCCTGTGTCAATAGCTAGTTTAT
Unaligned ( gi|33496 ): AAAGGACAACCTATGATAAAATGAAACTCGTCTTCAAGTATATTACAGTATTTACATTTTCTCTCATCAAGGTCGACCCTGTTTCTTGTCTATCGACCTGATTCAATCTCTAAT
Alignments
lowQualScore : 3333333333333333333 1 11111111
lowQualScore : 1 444444 333 1 1 3 22 2 3 1 1 3333 2 44 9999999999999999999 44 3 1 444444 44444444 1 1 3 3 77 2 1
lowQualScore : . ...... ... . . . .. . . . . .... . .. ................... .. . . ...... ........ . . . . .. . .
lowQualScore : 5 444444 333 0 5 1 44 5 1 5 5 3333 6 33 3333333333333333333 33 3 0 888888 11111111 7 7 3 4 99 7 0
consensus : AGG-ACATAT------TAAC-ACAAAATGATATTCATCTTCNATGTC-GT-TAAA-GTNA-C-ACA-AA----GTACANTNNC-----------G--C-AA-TTN-C-GTTCNATTC------TG--T-----T-C-TGT-GCATAACGACCNGTTTCAATTTTTAACTGAT
Reference ( family-647 ) : AGG-ACATAT------TAAC-ACAAAATGATATTCATCTTCNATGTC-GT-TAAA-GTNA-C-ACA-AA----GTACANTNNC-----------G--C-AA-TTN-C-GTTCNATTC------TG--T-----T-C-TGT-GCATAACGACCNGTTTCAATTTTTAACTGAT
gi|33482 : AGG-ACATAT------TATC-ACACAATGATATTCATCTTCAATGTC-AT-TAAG-GTGA-C-ACA-AA----GTACATTTTC-------------------TTT-CGGTTCTATCT------TGGTT-----T-C-TGT-GT----CTACTTGTTTCAATATTTAATTGAT
gi|33483 : aaAGG-ACATAT-------AATGATAAAATGATACTCATCTTTAATGTC-CT-TAAG-GTGA-C-ACA-AA----GTACATTTTC-------------------TTC-CAGTTCTATCT------TG--G-----T-T-TTT-GCGT--CTACTTGTTTCAATATTTAATTGAT
gi|33484 : aaAGG-ACATAT------TATC-ACAATATGATACTCATTTTCAATGTC-GT-TAGG-GTAA-C-ACA-CA----GTACATTTTC-------------------TTT-CAGTTTTATCT------TGGTT-----T-C-TGT----TGTCTGCCTGTTTTAATATTTAATTGAT
gi|33485 : aaAGG-AAATAT------TATA-ACAAAATGATACTCATCTTCAATGTC-AT-TAAT-GTGC-C-ACA-AA----CTACATTTTC-------------------TTT-CGGTCCTATCT------TGGTT-----T-C-TGT-GTTT----GTCTGTTTCAATATTTAATTGAT
gi|33486 : aaAGG-ACATATATGTATTATC-ACAAAATGATATTAATCTTCAATGTC-AT-TGAG-GTAA-C-ACA-AA----GTACATTTTC-------------------TTT-CGGTTCTATCT------TGGTT-----T-C-TGT-GT----CAACCCGTTTCAATTTTTAATTGAT
gi|33487 : aaG-ACATAT------TATA-ACAACATGATACTCATCTTCCATATC-A---AAAGGTGA-C-ACA-AT----GTACATTTTC-------------------TTT-CTGTTCTATCT------TGGTT-----T-C-TGT-GT----CTACCTGTTTCAATATTTAATTGAT
gi|33488 : aaatAGG-ACATCT------TATC-ACGAAATGATACTCATCTTCAATGTC-AT-TAAG-GTGT-C-TCA-AA----GTACAGTTCC-------------------TTT-CAGTTCTATCT------TGGTT-----T-C-CGT-G
gi|33489 : aaAGG-ACAT--------TATC-ACAAAATGATACTCTTCTGCAATGTC-AT-AAAG-GTGG-C-ACA-AA----GTACATTTTC-------------------TTT-CAGTTCTATCT------TG--T-----T---TGT-Gtctacc
gi|33490 : aaAGG-ACATAA------CAAA-ATAAAATGATATTCATCTTCTACATC-GTCTAAG-GT-A-C-ATA-AT----GAGCATTTTC-----------T--CTGA-CTT-C-TTTCAA---------TA--T-----T-CATAT-GTCTAA----CTGTTTCAATggttt
gi|33494 : aaGG-GCAAAT------AAGT-ATGAAATGGTATTCGTCTTCGATGTC-AT-TTAT-GTCA-CAACATAA------ACATTTTCTTTGGTCTCTTG--C-AA-TTT----TTTGATGT------CG--T-----C-C-TGT-
gi|33495 : aaatAGGTACATGT------CATG-ACAGCATGAAATTCATCTTCTATTTC-TT-GTGA-GTTA-C-ACA-AA----ATACAttctatagctagtttat
gi|33497 : aaAGG-ACATAT------TAAC-ACAAAATGGTATTCATCTTCTATGTC-GT-TAAA-GTTA-C-ATA-GA----GTACAATAAC-----------G--C-AAGTTA-C-GTTCAATTC------TG--T-----T-C-TGT-GCATAACGACCGGTTTCAACTTTCAACTGATtactctatcagcataagcaacatttgtatgtctccctgtttcaaca
gi|33498 : AGG-ACATAG------TAAC-ACAAAATGGTATTCATCTTCTATGTC-GT-TAAA-GTTA-C-ATA-GA----GTACAATAAC-----------G--C-AAGTTA-C-GTTCAATTC------TG--T-----T-C-TGT-GCATAACGACCGGTTTCAACTTTCAACTGAT
gi|33499 : AGG-ACATAG------TAAC-ACAAAATGGTATTCATCTTCTATGTC-GT-TAAA-GTTA-C-ATA-GA----GTACAATAAC-----------G--C-AAGTTA-T-GTTCAATTC------TG--T-----T-C-TGT-GCATAACGACCGGTTTCAACTTTCAACTGAT
gi|33500 : AGG-ACATAT------TAAC-ACAAAATGATATTCATCTTCTATGTA-GT-TTAA-GTGA-C-ATA-AA----ATACAATAAC-----------G--CAAA-TTA-C-GTTCCATTC------TG--T-----T-C-TGA-GCATAACGACCGAATTCAATTTTTAACTGAT
gi|33501 : AGG-ACATAT------TAAT-ACAAAATGGTATTCATCTCCTATGTC-GT-TAAA-GTTA-C-ATA-GA----GTACAATAGC-----------G--C-AAGTTA-C-GTTCAATTC------TG--T-----T-C-TGT-GCATAACGACTGGTTTCAACTTTCAACTGAT
gi|33502 : AGG-ACAGAT------TAAA-ATAAAGTGATATTCATCTTCTATATC-GT-TTTT-GTT----ACA-AA----GCACA-------------------C-AT-TTC-C-TTTCATTTCTAACTATG--T-----TCC-TGT-G----ACGTCCAGTTTCTATATTT
gi|33503 : AGG-GCATAT------TA-C-ACAAAATGGTATTCATCTTCTATGTC-GT-TGAA-GTGA-T-ATA-GA----GTACAAAAAC-----------G--C-AA-ATAAC-GTTCAATTC------TG--T-----T-C-TGA-GCATGACGACCGGTTTCAATTTTTAACCGAT
gi|33504 : AGA-ACATAT------TAAA-ACAAAGTGATACTCATCTTCAATATC-AT-TA----TTATT-ACA-AATCTGGCATAGTCGT-----------T--C--A-TTT-C-TTTCTATTC------T---T-----T-C-TATCCCATATCTCCCTGTTTCAATTCCTAA
gi|33505 : AGG-ACATAT------TAAC-ACAAAATGGTATTCATCTTCTAAGTC-GT-TAAA-GTTT-T-ATA-GA----GTGCAATAAC-----------GTTC-AG-TTA-C-GTTCAATTC------GG--T-----T-C-TGT-GCATAACGACCGGTTTTAACTTTCAACTGATt
gi|33506 : AGG-ACATAT------TAAC-ACAAAATAATATTCATCGTCATTGTCGGT-TAAA-GTTA-C-ATA-GA----GTGCA
gi|33507 : AGA-ACATTT------TAAA-ACAAAGTGATACTCATCTTCAATATC-AT-TA----TTATT-ACA-AA-----T---CTGGC-----------A--T-AG-TT-----TTTCATTT------TT--T-----T-C-TATCCCATATCTCCCTTTTTCAATTCTTAA
gi|33508 : AGG-GCATAT------TAAT-ACAAAATGATATTCATCTTCTTTGTC-GTGTAGA--TGG-C-ATA-AA----ATACAATAAC-----------G--C-AAATTA-C-GTTCCATTC------TG--T-----A-C-TGA-GCATAACGACCGGTTTTAATTTTTAGCTGATt
gi|33509 : GG-ACATAC------AAGC-AGAATGTGATATTCACTTTCAACGTT-AT-TAAA-TTTA-C--------------TATTTAG-----------A--C-AC-TTT-C-TATCTTTTC------TG--TCTGTAT-T-TGT-GTAT--CTACCCGTTTCGAT
gi|33510 : GG-ACATAC------CAGC-AGAAAGTGATATTCACTTTCAACATT-AT-TCAT-GTTA-C------A----ATACAG---------------A--C-AC-TTT-C-TATCTTTTC------TG--TCTGTAT-T-TGT-GTATA--TACCCATTTTAAT
gi|33511 : -ACATAT------TAAC-AGAAAATGATATTCATCTTCTATGTC-GT-TGAA-GTTA-C-ATA-AA----ATACAATAAC-----------G--CAAA-TTA-C-GTTACATTC------TG--T-----T-C-TGA-GCATAACGGCCGGTTTAAATTTTTAACCGAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|33491 ): AAAGGACAAACAATAACAAAATGATATTCGTCTTCCACTTCATTCATCTGACAATATATACATTTTCTATCTGATCTATCTAAATTTCTAT
Unaligned ( gi|33492 ): AAAGGACAAACAATAACAAAATGATATTCGTCTTCCACTACATTCATCTGACAATATATACATTTTCTATCTGATCTATCTATATTTCTATAACGACCCTCTTCAAT
Unaligned ( gi|33493 ): AAATGGGCAAATAAGTATGAAATGGTATTCGTCTTCAATGTCATTTAAGTCACAACATAAACATTTTCTTTGGTCTCTTGCAATTTTTTGATGTCGTCCTGTGTCAATAGCTAGTTTAT
Unaligned ( gi|33496 ): AAAGGACAACCTATGATAAAATGAAACTCGTCTTCAAGTATATTACAGTATTTACATTTTCTCTCATCAAGGTCGACCCTGTTTCTTGTCTATCGACCTGATTCAATCTCTAAT
Alignments
lowQualScore : 3333333333333333333 1 11111111
lowQualScore : 1 444444 333 1 1 3 22 2 3 1 1 3333 2 44 9999999999999999999 44 3 1 444444 44444444 1 1 3 3 77 2 1
lowQualScore : . ...... ... . . . .. . . . . .... . .. ................... .. . . ...... ........ . . . . .. . .
lowQualScore : 5 444444 333 0 5 1 44 5 1 5 5 3333 6 33 3333333333333333333 33 3 0 888888 11111111 7 7 3 4 99 7 0
consensus : AGG-ACATAT------TAAC-ACAAAATGATATTCATCTTCNATGTC-GT-TAAA-GTNA-C-ACA-AA----GTACANTNNC-----------G--C-AA-TTN-C-GTTCNATTC------TG--T-----T-C-TGT-GCATAACGACCNGTTTCAATTTTTAACTGAT
Reference ( family-647 ) : AGG-ACATAT------TAAC-ACAAAATGATATTCATCTTCNATGTC-GT-TAAA-GTNA-C-ACA-AA----GTACANTNNC-----------G--C-AA-TTN-C-GTTCNATTC------TG--T-----T-C-TGT-GCATAACGACCNGTTTCAATTTTTAACTGAT
gi|33482 : AGG-ACATAT------TATC-ACACAATGATATTCATCTTCAATGTC-AT-TAAG-GTGA-C-ACA-AA----GTACATTTTC-------------------TTT-CGGTTCTATCT------TGGTT-----T-C-TGT-GT----CTACTTGTTTCAATATTTAATTGAT
gi|33483 : aaAGG-ACATAT-------AATGATAAAATGATACTCATCTTTAATGTC-CT-TAAG-GTGA-C-ACA-AA----GTACATTTTC-------------------TTC-CAGTTCTATCT------TG--G-----T-T-TTT-GCGT--CTACTTGTTTCAATATTTAATTGAT
gi|33484 : aaAGG-ACATAT------TATC-ACAATATGATACTCATTTTCAATGTC-GT-TAGG-GTAA-C-ACA-CA----GTACATTTTC-------------------TTT-CAGTTTTATCT------TGGTT-----T-C-TGT----TGTCTGCCTGTTTTAATATTTAATTGAT
gi|33485 : aaAGG-AAATAT------TATA-ACAAAATGATACTCATCTTCAATGTC-AT-TAAT-GTGC-C-ACA-AA----CTACATTTTC-------------------TTT-CGGTCCTATCT------TGGTT-----T-C-TGT-GTTT----GTCTGTTTCAATATTTAATTGAT
gi|33486 : aaAGG-ACATATATGTATTATC-ACAAAATGATATTAATCTTCAATGTC-AT-TGAG-GTAA-C-ACA-AA----GTACATTTTC-------------------TTT-CGGTTCTATCT------TGGTT-----T-C-TGT-GT----CAACCCGTTTCAATTTTTAATTGAT
gi|33487 : aaG-ACATAT------TATA-ACAACATGATACTCATCTTCCATATC-A---AAAGGTGA-C-ACA-AT----GTACATTTTC-------------------TTT-CTGTTCTATCT------TGGTT-----T-C-TGT-GT----CTACCTGTTTCAATATTTAATTGAT
gi|33488 : aaatAGG-ACATCT------TATC-ACGAAATGATACTCATCTTCAATGTC-AT-TAAG-GTGT-C-TCA-AA----GTACAGTTCC-------------------TTT-CAGTTCTATCT------TGGTT-----T-C-CGT-G
gi|33489 : aaAGG-ACAT--------TATC-ACAAAATGATACTCTTCTGCAATGTC-AT-AAAG-GTGG-C-ACA-AA----GTACATTTTC-------------------TTT-CAGTTCTATCT------TG--T-----T---TGT-Gtctacc
gi|33490 : aaAGG-ACATAA------CAAA-ATAAAATGATATTCATCTTCTACATC-GTCTAAG-GT-A-C-ATA-AT----GAGCATTTTC-----------T--CTGA-CTT-C-TTTCAA---------TA--T-----T-CATAT-GTCTAA----CTGTTTCAATggttt
gi|33494 : aaGG-GCAAAT------AAGT-ATGAAATGGTATTCGTCTTCGATGTC-AT-TTAT-GTCA-CAACATAA------ACATTTTCTTTGGTCTCTTG--C-AA-TTT----TTTGATGT------CG--T-----C-C-TGT-
gi|33495 : aaatAGGTACATGT------CATG-ACAGCATGAAATTCATCTTCTATTTC-TT-GTGA-GTTA-C-ACA-AA----ATACAttctatagctagtttat
gi|33497 : aaAGG-ACATAT------TAAC-ACAAAATGGTATTCATCTTCTATGTC-GT-TAAA-GTTA-C-ATA-GA----GTACAATAAC-----------G--C-AAGTTA-C-GTTCAATTC------TG--T-----T-C-TGT-GCATAACGACCGGTTTCAACTTTCAACTGATtactctatcagcataagcaacatttgtatgtctccctgtttcaaca
gi|33498 : AGG-ACATAG------TAAC-ACAAAATGGTATTCATCTTCTATGTC-GT-TAAA-GTTA-C-ATA-GA----GTACAATAAC-----------G--C-AAGTTA-C-GTTCAATTC------TG--T-----T-C-TGT-GCATAACGACCGGTTTCAACTTTCAACTGAT
gi|33499 : AGG-ACATAG------TAAC-ACAAAATGGTATTCATCTTCTATGTC-GT-TAAA-GTTA-C-ATA-GA----GTACAATAAC-----------G--C-AAGTTA-T-GTTCAATTC------TG--T-----T-C-TGT-GCATAACGACCGGTTTCAACTTTCAACTGAT
gi|33500 : AGG-ACATAT------TAAC-ACAAAATGATATTCATCTTCTATGTA-GT-TTAA-GTGA-C-ATA-AA----ATACAATAAC-----------G--CAAA-TTA-C-GTTCCATTC------TG--T-----T-C-TGA-GCATAACGACCGAATTCAATTTTTAACTGAT
gi|33501 : AGG-ACATAT------TAAT-ACAAAATGGTATTCATCTCCTATGTC-GT-TAAA-GTTA-C-ATA-GA----GTACAATAGC-----------G--C-AAGTTA-C-GTTCAATTC------TG--T-----T-C-TGT-GCATAACGACTGGTTTCAACTTTCAACTGAT
gi|33502 : AGG-ACAGAT------TAAA-ATAAAGTGATATTCATCTTCTATATC-GT-TTTT-GTT----ACA-AA----GCACA-------------------C-AT-TTC-C-TTTCATTTCTAACTATG--T-----TCC-TGT-G----ACGTCCAGTTTCTATATTT
gi|33503 : AGG-GCATAT------TA-C-ACAAAATGGTATTCATCTTCTATGTC-GT-TGAA-GTGA-T-ATA-GA----GTACAAAAAC-----------G--C-AA-ATAAC-GTTCAATTC------TG--T-----T-C-TGA-GCATGACGACCGGTTTCAATTTTTAACCGAT
gi|33504 : AGA-ACATAT------TAAA-ACAAAGTGATACTCATCTTCAATATC-AT-TA----TTATT-ACA-AATCTGGCATAGTCGT-----------T--C--A-TTT-C-TTTCTATTC------T---T-----T-C-TATCCCATATCTCCCTGTTTCAATTCCTAA
gi|33505 : AGG-ACATAT------TAAC-ACAAAATGGTATTCATCTTCTAAGTC-GT-TAAA-GTTT-T-ATA-GA----GTGCAATAAC-----------GTTC-AG-TTA-C-GTTCAATTC------GG--T-----T-C-TGT-GCATAACGACCGGTTTTAACTTTCAACTGATt
gi|33506 : AGG-ACATAT------TAAC-ACAAAATAATATTCATCGTCATTGTCGGT-TAAA-GTTA-C-ATA-GA----GTGCA
gi|33507 : AGA-ACATTT------TAAA-ACAAAGTGATACTCATCTTCAATATC-AT-TA----TTATT-ACA-AA-----T---CTGGC-----------A--T-AG-TT-----TTTCATTT------TT--T-----T-C-TATCCCATATCTCCCTTTTTCAATTCTTAA
gi|33508 : AGG-GCATAT------TAAT-ACAAAATGATATTCATCTTCTTTGTC-GTGTAGA--TGG-C-ATA-AA----ATACAATAAC-----------G--C-AAATTA-C-GTTCCATTC------TG--T-----A-C-TGA-GCATAACGACCGGTTTTAATTTTTAGCTGATt
gi|33509 : GG-ACATAC------AAGC-AGAATGTGATATTCACTTTCAACGTT-AT-TAAA-TTTA-C--------------TATTTAG-----------A--C-AC-TTT-C-TATCTTTTC------TG--TCTGTAT-T-TGT-GTAT--CTACCCGTTTCGAT
gi|33510 : GG-ACATAC------CAGC-AGAAAGTGATATTCACTTTCAACATT-AT-TCAT-GTTA-C------A----ATACAG---------------A--C-AC-TTT-C-TATCTTTTC------TG--TCTGTAT-T-TGT-GTATA--TACCCATTTTAAT
gi|33511 : -ACATAT------TAAC-AGAAAATGATATTCATCTTCTATGTC-GT-TGAA-GTTA-C-ATA-AA----ATACAATAAC-----------G--CAAA-TTA-C-GTTACATTC------TG--T-----T-C-TGA-GCATAACGGCCGGTTTAAATTTTTAACCGAT
blockSeqs : T ATGTAT ATG A G C AG G T A T TCTG T TT TTTGGTCTCTTGCAA AA A T TAACTA TCTGTA C A C G GT T T
blockSeqs : . . TC A . G G A T . . . T TT GTTCAG C A T . TCTGTA . . C T AA T T
blockSeqs : . . TA A . . G G . . . . T TT TCTGA T G T . GTT . . . C AA A T
blockSeqs : . . TC A . . T A . . . . T TT GCAAG T G T . GTT . . . A AA T C
blockSeqs : . . TA C . . G G . . . . T TT GCAAG T T T . GTT . . . A AA G T
blockSeqs : . . TC A . . G G . . . . G TC GCAAG T A T . GTT . . . A AA G T
blockSeqs : . . TC A . . G G . . . . T TT GCAAA T A T . GTT . . . A AA G G
blockSeqs : . . AA T . . G C . . . . T TT GCAAG T . A . G . . . A GA G G
blockSeqs : . . GT G . . T T . . . . T TT GCAAA T . G . T . . . A AT G G
blockSeqs : . . TG T . . A T . . . . A AA GCAAA T . A . T . . . A AA G G
blockSeqs : . . AC T . . A T . . . . A AA GCAA A . A . T . . . A AT G G
blockSeqs : . . AC T . . A T . . . . A AA ATAG A . A . T . . . A AA T A
blockSeqs : . . AC T . . A G . . . . A AA ACAC A . C . T . . . A AA G G
blockSeqs : . . AC T . . A T . . . . A AG ACAC A . A . T . . . A A T T
blockSeqs : . . AT T . . A T . . . . A AA CAT A . A . T . . . A A G G
blockSeqs : . . AA T . . T G . . . . G CG TCA C . A . T . . . A . T T
blockSeqs : . . AA T . . A T . . . . A AA . T . T . T . . . . . T G
blockSeqs : . . AC A . . A T . . . . C GG . A . A . T . . . . . G C
blockSeqs : . . AC T . . A T . . . . A AA . A . C . T . . . . . . C
blockSeqs : . . AA A . . A T . . . . T TA . T . C . T . . . . . . G
blockSeqs : . . AT A . . A G . . . . G AA . T . T . T . . .
blockSeqs : . . GC T . . T T . . . . A . . A . T . T . . .
blockSeqs : . . GC A . . A T . . . . . . . . . C . T . . .
blockSeqs : . . AC A . . . T . . . .
blockSeqs : . . C T . . . . . . . .
blockSeqCons : GCAA*************** T******* AA
originalCons : AGG-ACATAT------TAAC-ACAAAATGATATTCATCTTCNATGTC-GT-TAAA-GTNA-C-ACA-AA----GTACANTNNC-----------G--C-AA-TTN-C-GTTCNATTC------TG--T-----T-C-TGT-GCATAACGACCNGTTTCAATTTTTAACTGAT
finalCons : AGG-ACATAT------TAAC-ACAAAATGATATTCATCTTCNATGTC-GT-TAAA-GTNA-C-ACA-AA----GTACANTNNCGCAA---------------TTN-C-GTTCNATTC------TGT-------T-C-TGT-GCATAACGACCNGTTTCAATTTTTAACTGAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|33491 ): AAAGGACAAACAATAACAAAATGATATTCGTCTTCCACTTCATTCATCTGACAATATATACATTTTCTATCTGATCTATCTAAATTTCTAT
Unaligned ( gi|33492 ): AAAGGACAAACAATAACAAAATGATATTCGTCTTCCACTACATTCATCTGACAATATATACATTTTCTATCTGATCTATCTATATTTCTATAACGACCCTCTTCAAT
Unaligned ( gi|33493 ): AAATGGGCAAATAAGTATGAAATGGTATTCGTCTTCAATGTCATTTAAGTCACAACATAAACATTTTCTTTGGTCTCTTGCAATTTTTTGATGTCGTCCTGTGTCAATAGCTAGTTTAT
Unaligned ( gi|33496 ): AAAGGACAACCTATGATAAAATGAAACTCGTCTTCAAGTATATTACAGTATTTACATTTTCTCTCATCAAGGTCGACCCTGTTTCTTGTCTATCGACCTGATTCAATCTCTAAT
Alignments
lowQualScore : 3333333333333333333 1 11111111
lowQualScore : 1 444444 333 1 1 3 22 2 3 1 1 3333 2 44 9999999999999999999 44 3 1 444444 44444444 1 1 3 3 77 2 1
lowQualScore : . ...... ... . . . .. . . . . .... . .. ................... .. . . ...... ........ . . . . .. . .
lowQualScore : 5 444444 333 0 5 1 44 5 1 5 5 3333 6 33 3333333333333333333 33 3 0 888888 11111111 7 7 3 4 99 7 0
consensus : AGG-ACATAT------TAAC-ACAAAATGATATTCATCTTCNATGTC-GT-TAAA-GTNA-C-ACA-AA----GTACANTNNC-----------G--C-AA-TTN-C-GTTCNATTC------TG--T-----T-C-TGT-GCATAACGACCNGTTTCAATTTTTAACTGAT
Reference ( family-647 ) : AGG-ACATAT------TAAC-ACAAAATGATATTCATCTTCNATGTC-GT-TAAA-GTNA-C-ACA-AA----GTACANTNNC-----------G--C-AA-TTN-C-GTTCNATTC------TG--T-----T-C-TGT-GCATAACGACCNGTTTCAATTTTTAACTGAT
gi|33482 : AGG-ACATAT------TATC-ACACAATGATATTCATCTTCAATGTC-AT-TAAG-GTGA-C-ACA-AA----GTACATTTTC-------------------TTT-CGGTTCTATCT------TGGTT-----T-C-TGT-GT----CTACTTGTTTCAATATTTAATTGAT
gi|33483 : aaAGG-ACATAT-------AATGATAAAATGATACTCATCTTTAATGTC-CT-TAAG-GTGA-C-ACA-AA----GTACATTTTC-------------------TTC-CAGTTCTATCT------TG--G-----T-T-TTT-GCGT--CTACTTGTTTCAATATTTAATTGAT
gi|33484 : aaAGG-ACATAT------TATC-ACAATATGATACTCATTTTCAATGTC-GT-TAGG-GTAA-C-ACA-CA----GTACATTTTC-------------------TTT-CAGTTTTATCT------TGGTT-----T-C-TGT----TGTCTGCCTGTTTTAATATTTAATTGAT
gi|33485 : aaAGG-AAATAT------TATA-ACAAAATGATACTCATCTTCAATGTC-AT-TAAT-GTGC-C-ACA-AA----CTACATTTTC-------------------TTT-CGGTCCTATCT------TGGTT-----T-C-TGT-GTTT----GTCTGTTTCAATATTTAATTGAT
gi|33486 : aaAGG-ACATATATGTATTATC-ACAAAATGATATTAATCTTCAATGTC-AT-TGAG-GTAA-C-ACA-AA----GTACATTTTC-------------------TTT-CGGTTCTATCT------TGGTT-----T-C-TGT-GT----CAACCCGTTTCAATTTTTAATTGAT
gi|33487 : aaG-ACATAT------TATA-ACAACATGATACTCATCTTCCATATC-A---AAAGGTGA-C-ACA-AT----GTACATTTTC-------------------TTT-CTGTTCTATCT------TGGTT-----T-C-TGT-GT----CTACCTGTTTCAATATTTAATTGAT
gi|33488 : aaatAGG-ACATCT------TATC-ACGAAATGATACTCATCTTCAATGTC-AT-TAAG-GTGT-C-TCA-AA----GTACAGTTCC-------------------TTT-CAGTTCTATCT------TGGTT-----T-C-CGT-G
gi|33489 : aaAGG-ACAT--------TATC-ACAAAATGATACTCTTCTGCAATGTC-AT-AAAG-GTGG-C-ACA-AA----GTACATTTTC-------------------TTT-CAGTTCTATCT------TG--T-----T---TGT-Gtctacc
gi|33490 : aaAGG-ACATAA------CAAA-ATAAAATGATATTCATCTTCTACATC-GTCTAAG-GT-A-C-ATA-AT----GAGCATTTTC-----------T--CTGA-CTT-C-TTTCAA---------TA--T-----T-CATAT-GTCTAA----CTGTTTCAATggttt
gi|33494 : aaGG-GCAAAT------AAGT-ATGAAATGGTATTCGTCTTCGATGTC-AT-TTAT-GTCA-CAACATAA------ACATTTTCTTTGGTCTCTTG--C-AA-TTT----TTTGATGT------CG--T-----C-C-TGT-
gi|33495 : aaatAGGTACATGT------CATG-ACAGCATGAAATTCATCTTCTATTTC-TT-GTGA-GTTA-C-ACA-AA----ATACAttctatagctagtttat
gi|33497 : aaAGG-ACATAT------TAAC-ACAAAATGGTATTCATCTTCTATGTC-GT-TAAA-GTTA-C-ATA-GA----GTACAATAAC-----------G--C-AAGTTA-C-GTTCAATTC------TG--T-----T-C-TGT-GCATAACGACCGGTTTCAACTTTCAACTGATtactctatcagcataagcaacatttgtatgtctccctgtttcaaca
gi|33498 : AGG-ACATAG------TAAC-ACAAAATGGTATTCATCTTCTATGTC-GT-TAAA-GTTA-C-ATA-GA----GTACAATAAC-----------G--C-AAGTTA-C-GTTCAATTC------TG--T-----T-C-TGT-GCATAACGACCGGTTTCAACTTTCAACTGAT
gi|33499 : AGG-ACATAG------TAAC-ACAAAATGGTATTCATCTTCTATGTC-GT-TAAA-GTTA-C-ATA-GA----GTACAATAAC-----------G--C-AAGTTA-T-GTTCAATTC------TG--T-----T-C-TGT-GCATAACGACCGGTTTCAACTTTCAACTGAT
gi|33500 : AGG-ACATAT------TAAC-ACAAAATGATATTCATCTTCTATGTA-GT-TTAA-GTGA-C-ATA-AA----ATACAATAAC-----------G--CAAA-TTA-C-GTTCCATTC------TG--T-----T-C-TGA-GCATAACGACCGAATTCAATTTTTAACTGAT
gi|33501 : AGG-ACATAT------TAAT-ACAAAATGGTATTCATCTCCTATGTC-GT-TAAA-GTTA-C-ATA-GA----GTACAATAGC-----------G--C-AAGTTA-C-GTTCAATTC------TG--T-----T-C-TGT-GCATAACGACTGGTTTCAACTTTCAACTGAT
gi|33502 : AGG-ACAGAT------TAAA-ATAAAGTGATATTCATCTTCTATATC-GT-TTTT-GTT----ACA-AA----GCACA-------------------C-AT-TTC-C-TTTCATTTCTAACTATG--T-----TCC-TGT-G----ACGTCCAGTTTCTATATTT
gi|33503 : AGG-GCATAT------TA-C-ACAAAATGGTATTCATCTTCTATGTC-GT-TGAA-GTGA-T-ATA-GA----GTACAAAAAC-----------G--C-AA-ATAAC-GTTCAATTC------TG--T-----T-C-TGA-GCATGACGACCGGTTTCAATTTTTAACCGAT
gi|33504 : AGA-ACATAT------TAAA-ACAAAGTGATACTCATCTTCAATATC-AT-TA----TTATT-ACA-AATCTGGCATAGTCGT-----------T--C--A-TTT-C-TTTCTATTC------T---T-----T-C-TATCCCATATCTCCCTGTTTCAATTCCTAA
gi|33505 : AGG-ACATAT------TAAC-ACAAAATGGTATTCATCTTCTAAGTC-GT-TAAA-GTTT-T-ATA-GA----GTGCAATAAC-----------GTTC-AG-TTA-C-GTTCAATTC------GG--T-----T-C-TGT-GCATAACGACCGGTTTTAACTTTCAACTGATt
gi|33506 : AGG-ACATAT------TAAC-ACAAAATAATATTCATCGTCATTGTCGGT-TAAA-GTTA-C-ATA-GA----GTGCA
gi|33507 : AGA-ACATTT------TAAA-ACAAAGTGATACTCATCTTCAATATC-AT-TA----TTATT-ACA-AA-----T---CTGGC-----------A--T-AG-TT-----TTTCATTT------TT--T-----T-C-TATCCCATATCTCCCTTTTTCAATTCTTAA
gi|33508 : AGG-GCATAT------TAAT-ACAAAATGATATTCATCTTCTTTGTC-GTGTAGA--TGG-C-ATA-AA----ATACAATAAC-----------G--C-AAATTA-C-GTTCCATTC------TG--T-----A-C-TGA-GCATAACGACCGGTTTTAATTTTTAGCTGATt
gi|33509 : GG-ACATAC------AAGC-AGAATGTGATATTCACTTTCAACGTT-AT-TAAA-TTTA-C--------------TATTTAG-----------A--C-AC-TTT-C-TATCTTTTC------TG--TCTGTAT-T-TGT-GTAT--CTACCCGTTTCGAT
gi|33510 : GG-ACATAC------CAGC-AGAAAGTGATATTCACTTTCAACATT-AT-TCAT-GTTA-C------A----ATACAG---------------A--C-AC-TTT-C-TATCTTTTC------TG--TCTGTAT-T-TGT-GTATA--TACCCATTTTAAT
gi|33511 : -ACATAT------TAAC-AGAAAATGATATTCATCTTCTATGTC-GT-TGAA-GTTA-C-ATA-AA----ATACAATAAC-----------G--CAAA-TTA-C-GTTACATTC------TG--T-----T-C-TGA-GCATAACGGCCGGTTTAAATTTTTAACCGAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|33491 ): AAAGGACAAACAATAACAAAATGATATTCGTCTTCCACTTCATTCATCTGACAATATATACATTTTCTATCTGATCTATCTAAATTTCTAT
Unaligned ( gi|33492 ): AAAGGACAAACAATAACAAAATGATATTCGTCTTCCACTACATTCATCTGACAATATATACATTTTCTATCTGATCTATCTATATTTCTATAACGACCCTCTTCAAT
Unaligned ( gi|33493 ): AAATGGGCAAATAAGTATGAAATGGTATTCGTCTTCAATGTCATTTAAGTCACAACATAAACATTTTCTTTGGTCTCTTGCAATTTTTTGATGTCGTCCTGTGTCAATAGCTAGTTTAT
Unaligned ( gi|33496 ): AAAGGACAACCTATGATAAAATGAAACTCGTCTTCAAGTATATTACAGTATTTACATTTTCTCTCATCAAGGTCGACCCTGTTTCTTGTCTATCGACCTGATTCAATCTCTAAT