lowQualScore : 11111111 111111 33333333333333333 11111 11 1
lowQualScore : 3 7 22222222 9 1 3 333 777777 222 44 1 1 4 6666 333 222222 11111111111111111 3333 1 9 22 77777 1 77 1 9 33 1 33 2 1
lowQualScore : . . ........ . . . ... ...... ... .. . . . .... ... ...... ................. .... . . .. ..... . .. . . .. . .. . .
lowQualScore : 1 3 00000000 4 4 3 999 777777 555 88 4 3 0 9999 777 888888 00000000000000000 0000 4 9 00 33333 5 33 5 2 77 5 55 8 6
consensus : TTT-TTTTATCACTTATTTTAGT----NCGNTTACAT-GCATGAACATGCA--G------GA---AGN-CTTAA-G-A-A--N-TG---TT------TTTT--N-----------ACAAACAATCACTACCCGGAAGTT----AAA-GGGGAAC--TTTTT----CTCATTTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTC-AAACTAACAATTATTAGCCG
Reference ( gi|45470 ) : TTT-TTTTATCATTGATTTTAGT----TCGCTTTCAT-GTATGAACATGCA--G------GA---AGG-CTTAA-G-A-A--C-TG---TT------TTAT--A-----------ACAAACAATCACTACCCGGAAGTT----AAA-GTGGAAC--TTTTG----CTCATTTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTG-AAACTAACACTTATTAGCCG
gi|45476 : TTT-TTTTATCATTGATTTTAGT----TCGTTTTCAT-GTATGAACATGCA--G------GA---AGG-CTTAA-G-A-A--C-TG---TT------TTAT--A-----------ACAAACAATCACTACCCGGAAGTT----AAA-GTCGAAC--TTTTG----CTCAATTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTG-AAACTAACACTTATTAGCCG
gi|45471 : TTT-TTTTATCATTGATTTGAGT----TCTCTTTCAT-GCATGAACATGCA--G------GA---AAG-TTTAA-G-A-A--C-TG---TT------TTAT--T-----------ACAAATAATCACTACCCGGAAGTT----AAA-GGGGAAC--TTTTG----CTCATTTCACCAAAAGGGAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTG-AAACTAACACTTATTAGCCG
gi|45478 : TTT-TTTTATCATTGATTTTAGT----TCGCTTTCAT-GCATAAACATGCA--G------GA---AGG-CTTAA-G-A-A--C-TG---TT------TTAT--T------------TAAACAATCACTACCCGGAAGTT----AAA-GAGGAGT--TTTTT----CTCATTTCACCAAATGGAAAATTCTA-A--TT-TT-T--CA-CCGAATTTATGTTC-AAACTAAAAATTATAAGCCG
gi|45479 : TTG-TTTTATTATTGATTTTAGT----TTGCTTACAT-GCATGAACATGCA--ATGCAC-GA---AGG-CTTAA-G-A-A--C-TG---TT------TTAT--T-----------ACGAACAATCACTACCCGGAAGTT----AAA-GGGGAAC--TTTTT----CTCATTTGACCAAAAGGAAAATTCTC-AT-TT-TT-T--CA-CCGAATTTACGTTC-ACACTAACAATTATAAGCCG
gi|45483 : TTT-TTTTATTAT-GATTTTAGT----TCGTTTTCAT-GCATAAACATGCA--G------GA---ATG-TTTAA-G-A-A--C-TG---TTGTTTT-TTTT--T-----------ACAAACAATCACTACCCGAAGGTT----AAA-GGGGAAC--TTTTT----CTCATTTCACCAAAAGGAAAATACTC-A--TT-TTAT--CA-CCGAATTTAACTTC-AAACTAACAATTATTAGCCG
gi|45473 : TTT-TTTTATTAT-GATTTTAGT----TCGTTTTCAT-GCATAAACATGCA--G------GA---ATG-TTTAA-G-A-A--C-TG---TTGTTGTTTTTT--T-----------ACAAACAATCACTACCCGAAGGTT----AAA-GGGGAAC--GTTTT----CTCATTTCACCAAAAGGAAAATACTC-G--TT-TTAT--CA-CCGAATTTAACTTC-AAACTAACAATTATTAGCCG
gi|45472 : TTT-TTTTATCATTGATTTTAGT----TCGCTTTCAT-GCATAAACATGCA--G------GA---AGG-TTTAA-G-A-A--C-TG---TTGTT---TTTT--T-----------ACAAACAATCACTACCCGGAAGTT----AAA-GGGGAAC--TTTTT----CTCATTTCACCAAATGGAAATTTCTA-A--TT-TT-T--C----------ACGTTC-AAACTAACAATTAT
gi|45484 : TTT-TCTTATTATTGATTTTAGC----CCGCTTTCAT-GCATGAACATGCAT-GAACCTTGA---AGG-CTTAA-G-A-G--C-AG---TT------TTAT--T-----------ACAAACAATCACTACCTTGAAGTT----TAA-GGGGAAC--TTTTT----CTCATTTCACCAAATGGAAAATTCTC-AT-TT-TT-T--CA-CCGAATTTACAATC-AAACTAACAATTATatgctg
gi|45480 : TTT-TTTTATCACTTATTTTAGT----GCAGTTACAT-ACATGAACATACC--G------GA---AGT-CTTAA-G-A-A--A-TG---TT------TTTTTTA-----------ACAAACAATCACTACCCAAAGTTT----AAA-GGGGAAC--TTTTT----CTTATTTGACCAAAAGGAAAATATTC-A--TTATA-T--CA-CC-AATTTACGTTC-AAACTAATAATTATCAGCCGatgc
gi|45481 : TTT-TTTCCCCACTTATTTTAGA----GCAGTTACAC-ACATGAACATACC--G------GA---AGT-CTTAA-G-A-A--A-TG---TT------TTTT--TTTTTTTTTTTTACAAACAATCAATTCCCAAAGGTT----AAA-GGGGAAC--TTTTT----CTCATTTCACCAAAATGAAAATACTC-A--TT-TTAT--CA-CCGAATTTACGTTC-AAACTAACAATTATTAGCCG
gi|45482 : TTT-TCTTATCACTTATTTTAGT----GCAGTTACAC-ACATGAACATACC--G------AA---AGT-CTTAA-G-A-A--A-TGTTTTT------TTTT--A-------------AAACAATCACTACCCGAAGGTT----AAAGGGGGAAC--TTTTT----CTCATTTCACTAAAAGGAAAATACTC-A--TT-TCAT--CA-CCGAATTTA-ATAGCAAACTAACGATAATTAGCC
gi|45474 : TTTATTTTATCACTTATTCTAGT----GCATTTACAT-GCAGTAACACATC--G------TT---ATT-CTTAA-G-A-T--A-TG---TT------TTTT--A------------CAAGCAATCAGCACCCGGCAATT----AAA-GGGGAAC--TTTTT----ATCAATTCACCTAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGACTTTACGTTC-AAACTAACAATTATGAGTC
gi|45477 : TTTATTTTATCACTTATTCTAGT----GCATTTACATCGT-----TATTC--------------------TTAA-A-ATA--T-TT---TT------TT-T--A------------CAAGCAATCAGCACCCGGAAATT----AAA-GGGGAAC--TTTAT----ATCAATTCAACAAAAAGAAAATTCTC-A--TT-TT-T--CA-CCGACTTAACGTTC-AAACTAACAATTA
gi|45485 : TTT-GTTT-TCATTTATTTTAGT----CCGCTTACAT-GTATAAACATGCA--G------AA---AGG-AATAA-G-T-A--C-AGT--TT------TTTT--T-----------ACAAGCAATCACTACCTGGAAGTCACCAAAA-GT-AAAC--TTTTT----CTCA------------------TCGC-A--TT-T----------------ACGTTC-AAACTAACAATTATTAGCC
gi|45475 : TTT-TTTTATAACTTATTTTAGT----ACAC----AT-GT--GAACATACC--G------GA---AGT-CTTAA-G-A-A--A-TA---TT------TTTT--A-----------ACCAA
gi|45488 : TT-TTTTATCACTTATTTTAGT----ACAGTTACAT-ACATAAACATGCA--T------GA---AGA-CTTTA-G-AGA--T-TT---TT------TTA----------------CAAACAATCACCACCTGAAAGTT----AAA-GGGGAAC--TTTTT----CTCATTTCACCAAATTGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTC-AAACTAACAATTATGAGTC
gi|45486 : TT-TTTTATCACTTATTTTAGT----ACAGTTACAT-ACATAAACATGCA--T------GA---AGA-CTTTA-G-AGA--T-TT---TT------TTA----------------CAAACAATCACCACCTGAAAGTT----AAA-GGGGAAC--TTTTT----CTCATTTCACCAAATTGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTC-AAACTAACAATTATGAGTC
gi|45489 : TT-TTTTATCACTTATTTATGT----ATATTTACGT-GTATGAACATGCAATG------CAGTCAGT-CTTGA-G-A-AAGT-TT---TT------TTAC--A-----------ATCAACAA-------CCGAAGGTT----AAA-GGGGAAT--TTTTT----GTTATTTCACCAAATGGAAAATTCTC-ATTTT-TT-T--CA-CCGAATTGACGTTC-AAACTAACAATTATTAGCTG
gi|45490 : TT-TTTTATCACTTATTTTAGTATAATTATGTACGT-GCATGAACATGCA--T------TC---AGT-CTTAA-G-A-A--A-TG---TT------TTTT--TTTT--------ACCAACAATCAACAACCGAAGGTT----AAA-GTTGAAT--TTTT
gi|45487 : TT-TTTTATCACTTATTTTAGTATAATTATGTACGT-GCATGAACATGCA--T------TC---AGT-CTTAA-G-A-A--A-TG---TT------TTTT--TTTT--------ACCAACAATCAACAACCGAAGGTT----AAA-GTTGAAT--TTTT
gi|45492 : T-TTTTATCACTTATTTAAGT----ACAGTTACAC-ACATGAATACACC--G------GA---AGT-CTTAA-A-A-A--A-TG---TTGTTGT-TTTT--T-----------ACAAACAATCATTACCCGAAGGTT----AAA-GGGGAAC--TTTTT----CTCATTTCACCGAAAGGAAAATACTC-A--TT-TTAT--CA-CCGAATTCAACTTC-AAACTAACAATTATTAGCCG
gi|45491 : T-TTTTATCACTAACTTTAGT----ACAGTTACAC-ACATGAACATACC--G-------A---AGT-CTTAA-G-A-A--A-TG---TT------TTTT--TTTTT-------ACAAACAATCACTACCCGAAGGTT----AAA-GGGGAAC--TTTTT----CTCATTTCACCAAAAGGAAAATACTC-A--TT-TTAT--CA-CCGAATCTA
gi|45494 : T-TTTTATAACTTATTTAAGT----TCAGTTACAA-GCATGAACATGCA--T------GA---AGG-CTTATTG-A-A--A-TA---TT------TTTT--T-----------A---ACAATCACCACCCGAAAGTT----AGA--TG-AAC--TTTTT----CTCATTTCACAAAATGGAAAAGTCTC-T--TT-TT-T--CA-CCGAATTTACGTTC-AAACAAACAATTATGAGCC
gi|45493 : T-TTTTATAACTTATTTTAGT----ACAGTTGCCT-GCATGAACACACC--G------TC---AGT-CGT----------T-TT---TT------TTTT--T-----------ACAAACAATCACCACCCACAAGTT----ATA-GGGGAACCGTTTTT----CTCATTTCACCAAAAGTAATATTATC-ATTTT-TT-T--CA-CCGATTTAACGTTC-AAAGTAACAATTATAAGC
gi|45495 : T-TTTTATCATTTACTTTAGC----ACAGTTACAT-GCATAAACGTACA--G------AA---AGG-CTTAA-GAA-A--CGCG---TT------TT-T--A-----------AGAA
gi|45496 : -TTTTATGATTTATTTTAGT----CAAGTTACAT-GCATGAACATACA--G------GA---AGA-CGAAA-T-A-A--A-TG---TA------TTGT--TT----------ACAAACAATCTTAACCCGAAAGTT----AAA-GGCGAAC--TTTT-----CTAACTTTACCGAAATGGAAATTCTCAA--TT-TT-T--TA-CCTAATTCACGTTC-AAATTAACA
gi|45497 : ATTTATTTTAGT----GTATTTATAT-GCAAGAACATACC--G------AA---AGT-CTTAA-G-A-A--A-TA---TT------TTTT--A------------CAAACAATCACTACTCAGAAATT----AAA-GGGGAAC--TTTTT----ATCATTTCACCAAAACGAAAACTTTC-A--TT-TT-TA-TA-ACGAATCTACTTTC-AAATTAACAATGCTTAGCCG
gi|45498 : GCTTT-AT-GCGAAAACATTCA--G------GG---ACATCCCAG-A-A-A--T-TA---TC------ATTT--A-----------ACAAACAATCACTACCCGGGATTT----AAA-GGTGAAC--TTTTT----CTCATTTCACAAAAAAGAAATTTCTC-A--TT-TT-T--AAGCCGAAT
gi|45499 : G-TTTCA-G-A-A--T-TT---TT------TTTT--A------------CAAACAATCACCATCCGAAAGTT----GAA-GGGGAAC--TTTTT----CTCATTTCGCCAAATGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTC-AAACTAACAAATATGAGCC
gi|45500 : -A-A--C-TG---TG--------AT--A-----------ATAAACCGTCACTCTTCTGA---T----ACA-TTAGCAT--TTTTTTCTTCTCATTTCACCAAAAGGGAAATTCT--A--TT-TT-TTTCA-CCGTATTTACGTTC-AAACTTACAATTATTAGCC
Alignments
lowQualScore : 111111 111111111111
lowQualScore : 3 1 33 6666 33 777777 222 1 1 1 1 777 2 222222 1 444444444444 1 11 1 77 1 8 33 1 1
lowQualScore : . . .. .... .. ...... ... . . . . ... . ...... . ............ . .. . .. . . .. . .
lowQualScore : 0 0 99 1111 33 444444 444 4 0 3 0 888 7 888888 3 666666666666 4 99 5 00 5 9 55 5 1
consensus : TTT-TTTTATCACTTATTTTAGTNCGNTTA----CATGCATGAACATGCA--G------GA---A-GNCTTAA-GAAATG---T-T------TT-TTT-----------ACAAACAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAATTATTAGCCG
Reference ( family-645 ) : TTT-TTTTATCACTTATTTTAGTNCGNTTA----CATGCATGAACATGCA--G------GA---A-GNCTTAA-GAANTG---T-T------TT-TTN-----------ACAAACAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAATTATTAGCCG
gi|45470 : TTT-TTTTATCATTGATTTTAGTTCGCTTT----CATGTATGAACATGCA--G------GA---A-GGCTTAA-GAACTG---T-T------TT-ATA-----------ACAAACAATCACTACCCGGAAGTTAAA-GTGGAAC--TTTTGCTCATTTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTGAAACTAACACTTATTAGCCG
gi|45471 : TTT-TTTTATCATTGATTTGAGTTCTCTTT----CATGCATGAACATGCA--G------GA---A-AGTTTAA-GAACTG---T-T------TT-ATT-----------ACAAATAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTGCTCATTTCACCAAAAGGGAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTGAAACTAACACTTATTAGCCG
gi|45472 : TTT-TTTTATCATTGATTTTAGTTCGCTTT----CATGCATAAACATGCA--G------GA---A-GGTTTAA-GAACTG---T-TGTT---TT-TTT-----------ACAAACAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAATGGAAATTTCTA-A--TT-TT-T--C----------ACGTTCAAACTAACAATTAT
gi|45473 : TTT-TTTTATTA-TGATTTTAGTTCGTTTT----CATGCATAAACATGCA--G------GA---A-TGTTTAA-GAACTG---T-TGTTGTTTT-TTT-----------ACAAACAATCACTACCCGAAGGTTAAA-GGGGAAC--GTTTTCTCATTTCACCAAAAGGAAAATACTC-G--TT-TTAT--CA-CCGAATTTAACTTCAAACTAACAATTATTAGCCGatgctg
gi|45474 : TTTATTTTATCACTTATTCTAGTGCATTTA----CATGCAGTAACACATC--G------TT---A-TTCTTAA-GATATG---T-T------TT-TT------------ACAAGCAATCAGCACCCGGCAATTAAA-GGGGAAC--TTTTTATCAATTCACCTAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGACTTTACGTTCAAACTAACAATTATGAGTC
gi|45475 : TTT-TTTTATAACTTATTTTAGTAC----A----CATG--TGAACATACC--G------GA---A-GTCTTAA-GAAATA---T-T------TT-TTA-----------ACCAA
gi|45476 : TTT-TTTTATCATTGATTTTAGTTCGTTTT----CATGTATGAACATGCA--G------GA---A-GGCTTAA-GAACTG---T-T------TT-ATA-----------ACAAACAATCACTACCCGGAAGTTAAA-GTCGAAC--TTTTGCTCAATTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTGAAACTAACACTTATTAGCCG
gi|45477 : TTTATTTTATCACTTATTCTAGTGCATTTA----CAT-CGT---TAT--------------------TCTTAA-AATAT----T-T------TT-TTT-----------ACAAGCAATCAGCACCCGGAAATTAAA-GGGGAAC--TTTATATCAATTCAACAAAAAGAAAATTCTC-A--TT-TT-T--CA-CCGACTTAACGTTCAAACTAACAATTA
gi|45478 : TTT-TTTTATCATTGATTTTAGTTCGCTTT----CATGCATAAACATGCA--G------GA---A-GGCTTAA-GAACTG---T-T------TTATTT-----------A--AACAATCACTACCCGGAAGTTAAA-GAGGAGT--TTTTTCTCATTTCACCAAATGGAAAATTCTA-A--TT-TT-T--CA-CCGAATTTATGTTCAAACTAAAAATTATAAGCCG
gi|45479 : TTG-TTTTATTATTGATTTTAGTTTGCTTA----CATGCATGAACATGCA--ATGCAC-GA---A-GGCTTAA-GAACTG---T-T------TT-ATT-----------ACGAACAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTTCTCATTTGACCAAAAGGAAAATTCTC-AT-TT-TT-T--CA-CCGAATTTACGTTCACACTAACAATTATAAGCCG
gi|45480 : TTT-TTTTATCACTTATTTTAGTGCAGTTA----CATACATGAACATACC--G------GA---A-GTCTTAA-GAAATG---T-T------TT-TTTTA---------ACAAACAATCACTACCCAAAGTTTAAA-GGGGAAC--TTTTTCTTATTTGACCAAAAGGAAAATATTC-A--TTATA-T--CA-CC-AATTTACGTTCAAACTAATAATTATCAGCCG
gi|45481 : TTT-TTTCCCCACTTATTTTAGAGCAGTTA----CACACATGAACATACC--G------GA---A-GTCTTAA-GAAATG---T-T------TT-TTTTTTTTTTTTTTACAAACAATCAATTCCCAAAGGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAATGAAAATACTC-A--TT-TTAT--CA-CCGAATTTACGTTCAAACTAACAATTATTAGCCG
gi|45482 : TTT-TCTTATCACTTATTTTAGTGCAGTTA----CACACATGAACATACC--G------AA---A-GTCTTAA-GAAATGTT-T-T------TT-TTT-----------A-AAACAATCACTACCCGAAGGTTAAAGGGGGAAC--TTTTTCTCATTTCACTAAAAGGAAAATACTC-A--TT-TCAT--CA-CCGAATTTAATAGCAAACTAACGATAATTAGCC
gi|45483 : TTT-TTTTATTA-TGATTTTAGTTCGTTTT----CATGCATAAACATGCA--G------GA---A-TGTTTAA-GAACTG---T-TGTTTT-TT-TTT-----------ACAAACAATCACTACCCGAAGGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAAGGAAAATACTC-A--TT-TTAT--CA-CCGAATTTAACTTCAAACTAACAATTATTAGCCG
gi|45484 : TTT-TCTTATTATTGATTTTAGCCCGCTTT----CATGCATGAACATGCAT-GAACCTTGA---A-GGCTTAA-GAGCAG---T-T------TT-ATT-----------ACAAACAATCACTACCTTGAAGTTTAA-GGGGAAC--TTTTTCTCATTTCACCAAATGGAAAATTCTC-AT-TT-TT-T--CA-CCGAATTTACAATCAAACTAACAATTAT
gi|45485 : TTT-GTTT-TCATTTATTTTAGTCCGCTTA----CATGTATAAACATGCA--G------AA---A-GGAATAA-GTACAGT--T-T------TT-TTT-----------ACAAGCAATCACTACCTGGAAG--------------------------TCACCAAAAGTAAACTT-------TT-TC-T--CA-TCGCATTTACGTTCAAACTAACAATTATTAGCCatgc
gi|45486 : TT-TTTTATCACTTATTTTAGTACAGTTA----CATACATAAACATGCA--T------GA---A-GACTTTA-GAGAT------T------TT-TTT-----------ACAAACAATCACCACCTGAAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAATTGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAATTATGAGTC
gi|45487 : TT-TTTTATCACTTATTTTAGTATAATTATGTACGTGCATGAACATGCA--T------TC---A-GTCTTAA-GAAATGTTTT-T------TT-TTT-----------ACCAACAATCAACAACCGAAGGTTAAA-GTTGAAT--TTTT
gi|45488 : TT-TTTTATCACTTATTTTAGTACAGTTA----CATACATAAACATGCA--T------GA---A-GACTTTA-GAGAT------T------TT-TTT-----------ACAAACAATCACCACCTGAAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAATTGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAATTATGAGTC
gi|45489 : TT-TTTTATCACTTATTTATGTATATTTA----CGTGTATGAACATGCAATG------CAGTCA-GTCTTGA-GAAA-G---T-T------TT-TTT---------------ACAATCAACAACCGAAGGTTAAA-GGGGAAT--TTTTTGTTATTTCACCAAATGGAAAATTCTC-ATTTT-TT-T--CA-CCGAATTGACGTTCAAACTAACAATTATTAGCTG
gi|45490 : TT-TTTTATCACTTATTTTAGTATAATTATGTACGTGCATGAACATGCA--T------TC---A-GTCTTAA-GAAATGTTTT-T------TT-TTT-----------ACCAACAATCAACAACCGAAGGTTAAA-GTTGAAT--TTTT
gi|45491 : T-TTTTATCACTAACTTTAGTACAGTTA----CACACATGAACATACC--G-------A---A-GTCTTAA-GAAATG---T-T------TT-TTTTTTT-------ACAAACAATCACTACCCGAAGGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAAGGAAAATACTC-A--TT-TTAT--CA-CCGAATCTA
gi|45492 : T-TTTTATCACTTATTTAAGTACAGTTA----CACACATGAATACACC--G------GA---A-GTCTTAA-AAAATG---T-TGTTGT-TT-TTT-----------ACAAACAATCATTACCCGAAGGTTAAA-GGGGAAC--TTTTTCTCATTTCACCGAAAGGAAAATACTC-A--TT-TTAT--CA-CCGAATTCAACTTCAAACTAACAATTATTAGCCG
gi|45493 : T-TTTTATAACTTATTTTAGTACAGTTG----CCTGCATGAACACACC--G------TC---A-GTCGT------TTT---T-T------TT-TTT-----------ACAAACAATCACCACCCACAAGTTATA-GGGGAACCGTTTTTCTCATTTCACCAAAAGTAATATTATC-ATTTT-TT-T--CA-CCGATTTAACGTTCAAAGTAACAATTATAAGC
gi|45494 : T-TTTTATAACTTATTTAAGTTCAGTTA----CAAGCATGAACATGCA--T------GA---A-GGCTTATTGAAATA---T-T------TT-TTT-----------A---ACAATCACCACCCGAAAGTTA---GATGAAC--TTTTTCTCATTTCACAAAATGGAAAAGTCTC-T--TT-TT-T--CA-CCGAATTTACGTTCAAACAAACAATTATGAGCC
gi|45495 : T-TTTTATCATTTACTTTAGCACAGTTA----CATGCATAAACGTACA--G------AA---A-GGCTTAA-GAAACG---CGT------TT-TTA-----------AGAA
gi|45496 : -TTTTATGATTTATTTTAGTCAAGTTA----CATGCATGAACATACA--G------GA---A-GACGAAA-TAAATG---TAT------TG-TTT-----------ACAAACAATCTTAACCCGAAAGTTAAA-GGCGAAC---TTTTCTAACTTTACCGAAATGGAAATTCTCAA--TT-TT-T--TA-CCTAATTCACGTTCAAATTAACA
gi|45497 : ATTTATTTTAGTGTATTTA----TATGCAAGAACATACC--G------AA---A-GTCTTAA-GAAATA---T-T------TT-TT------------ACAAACAATCACTACTCAGAAATTAAA-GGGGAAC--TTTTTATCATTTCACCAAAACGAAAACTTTC-A--TT-TT-TA-TA-ACGAATCTACTTTCAAATTAACAATGCTTAGCCG
gi|45498 : ATGCGAAAACATTCA--G------GG---ACATCCCAG-AAATTA---T-C------AT-TTA-----------ACAAACAATCACTACCCGGGATTTAAA-GGTGAAC--TTTTTCTCATTTCACAAAAAAGAAATTTCTC-A--TT-TT-T--AAGCCGAAT
gi|45499 : gctttTTCA-GAATT----T-T------TT-TTT-----------ACAAACAATCACCATCCGAAAGTTGAA-GGGGAAC--TTTTTCTCATTTCGCCAAATGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAAATATGAGCC
gi|45500 : gt--TTCTTCTCATTTCACCAAAAGGGAAATTCT--A--TT-TT-TTTCA-CCGTATTTACGTTCAAACTTACAATTATTAGCC
Alignments
lowQualScore : 111111 11111111111
lowQualScore : 3 1 33 6666 33 777777 222 444444 33333 1 1 1 77777 1 222222 00000000000 11 1 11 1 77 1 8 33 1 1
lowQualScore : . . .. .... .. ...... ... ...... ..... . . . ..... . ...... ........... .. . .. . .. . . .. . .
lowQualScore : 0 0 99 1111 33 444444 444 000000 99999 4 4 4 55555 3 888888 55555555555 88 4 99 5 00 5 9 55 5 1
consensus : TTT-TTTTATCACTTATTTTAGTNCGNTTA----CATGCATGAACATGCA--G------GA---A------G----NC-TTAA-G-AAAT-G---T-T------TT-----------TTT--ACAAACAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAATTATTAGCCG
Reference ( family-645 ) : TTT-TTTTATCACTTATTTTAGTNCGNTTA----CATGCATGAACATGCA--G------GA---A------G----NC-TTAA-G-AAAT-G---T-T------TT-----------TTT--ACAAACAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAATTATTAGCCG
gi|45470 : TTT-TTTTATCATTGATTTTAGTTCGCTTT----CATGTATGAACATGCA--G------GA---A------G----GC-TTAA-G-AACT-G---T-T------TT-----------ATA--ACAAACAATCACTACCCGGAAGTTAAA-GTGGAAC--TTTTGCTCATTTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTGAAACTAACACTTATTAGCCG
gi|45471 : TTT-TTTTATCATTGATTTGAGTTCTCTTT----CATGCATGAACATGCA--G------GA---A------A----GT-TTAA-G-AACT-G---T-T------TT-----------ATT--ACAAATAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTGCTCATTTCACCAAAAGGGAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTGAAACTAACACTTATTAGCCG
gi|45472 : TTT-TTTTATCATTGATTTTAGTTCGCTTT----CATGCATAAACATGCA--G------GA---A------G----GT-TTAA-G-AACT-G---T-TGTT---TT-----------TTT--ACAAACAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAATGGAAATTTCTA-A--TT-TT-T--C----------ACGTTCAAACTAACAATTAT
gi|45473 : TTT-TTTTATTA-TGATTTTAGTTCGTTTT----CATGCATAAACATGCA--G------GA---A------T----GT-TTAA-G-AACT-G---T-TGTTGTTTT-----------TTT--ACAAACAATCACTACCCGAAGGTTAAA-GGGGAAC--GTTTTCTCATTTCACCAAAAGGAAAATACTC-G--TT-TTAT--CA-CCGAATTTAACTTCAAACTAACAATTATTAGCCGatgctg
gi|45474 : TTTATTTTATCACTTATTCTAGTGCATTTA----CATG----------CA--G------TA---ACACATCGTTATTC-TTAA-G-ATAT-G-----T------TT-----------TTT--ACAAGCAATCAGCACCCGGCAATTAAA-GGGGAAC--TTTTTATCAATTCACCTAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGACTTTACGTTCAAACTAACAATTATGAGTC
gi|45475 : TTT-TTTTATAACTTATTTTAGTAC----A----CATG--TGAACATACC--G------GA---A------G----TC-TTAA-G-AAAT-A---T-T------TT-----------TTA--ACCAA
gi|45476 : TTT-TTTTATCATTGATTTTAGTTCGTTTT----CATGTATGAACATGCA--G------GA---A------G----GC-TTAA-G-AACT-G---T-T------TT-----------ATA--ACAAACAATCACTACCCGGAAGTTAAA-GTCGAAC--TTTTGCTCAATTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTGAAACTAACACTTATTAGCCG
gi|45477 : TTTATTTTATCACTTATTCTAGTGCATTTA----CAT-CGT---TAT-----------------------------TC-TTAA-A-ATAT-----T-T------TT-----------TTT--ACAAGCAATCAGCACCCGGAAATTAAA-GGGGAAC--TTTATATCAATTCAACAAAAAGAAAATTCTC-A--TT-TT-T--CA-CCGACTTAACGTTCAAACTAACAATTA
gi|45478 : TTT-TTTTATCATTGATTTTAGTTCGCTTT----CATGCATAAACATGCA--G------GA---A------G----GC-TTAA-G-AACT-G---T-T------TTA----------TTT--A--AACAATCACTACCCGGAAGTTAAA-GAGGAGT--TTTTTCTCATTTCACCAAATGGAAAATTCTA-A--TT-TT-T--CA-CCGAATTTATGTTCAAACTAAAAATTATAAGCCG
gi|45479 : TTG-TTTTATTATTGATTTTAGTTTGCTTA----CATGCATGAACATGCA--ATGCAC-GA---A------G----GC-TTAA-G-AACT-G---T-T------TT-----------ATT--ACGAACAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTTCTCATTTGACCAAAAGGAAAATTCTC-AT-TT-TT-T--CA-CCGAATTTACGTTCACACTAACAATTATAAGCCG
gi|45480 : TTT-TTTTATCACTTATTTTAGTGCAGTTA----CATACATGAACATACC--G------GA---A------G----TC-TTAA-G-AAAT-G---T-T------TT-----------TTTTAACAAACAATCACTACCCAAAGTTTAAA-GGGGAAC--TTTTTCTTATTTGACCAAAAGGAAAATATTC-A--TTATA-T--CA-CC-AATTTACGTTCAAACTAATAATTATCAGCCG
gi|45481 : TTT-TTTCCCCACTTATTTTAGAGCAGTTA----CACACATGAACATACC--G------GA---A------G----TC-TTAA-G-AAAT-G---T-T------TTTTTTTTTTTTTTTT--ACAAACAATCAATTCCCAAAGGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAATGAAAATACTC-A--TT-TTAT--CA-CCGAATTTACGTTCAAACTAACAATTATTAGCCG
gi|45482 : TTT-TCTTATCACTTATTTTAGTGCAGTTA----CACACATGAACATACC--G------AA---A------G----TC-TTAA-G-AAAT-GTT-T-T------TT-----------TTT--A-AAACAATCACTACCCGAAGGTTAAAGGGGGAAC--TTTTTCTCATTTCACTAAAAGGAAAATACTC-A--TT-TCAT--CA-CCGAATTTAATAGCAAACTAACGATAATTAGCC
gi|45483 : TTT-TTTTATTA-TGATTTTAGTTCGTTTT----CATGCATAAACATGCA--G------GA---A------T----GT-TTAA-G-AACT-G---T-TGTTTT-TT-----------TTT--ACAAACAATCACTACCCGAAGGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAAGGAAAATACTC-A--TT-TTAT--CA-CCGAATTTAACTTCAAACTAACAATTATTAGCCG
gi|45484 : TTT-TCTTATTATTGATTTTAGCCCGCTTT----CATGCATGAACATGCAT-GAACCTTGA---A------G----GC-TTAA-G-AGCA-G---T-T------TT-----------ATT--ACAAACAATCACTACCTTGAAGTTTAA-GGGGAAC--TTTTTCTCATTTCACCAAATGGAAAATTCTC-AT-TT-TT-T--CA-CCGAATTTACAATCAAACTAACAATTAT
gi|45485 : TTT-GTTT-TCATTTATTTTAGTCCGCTTA----CATGTATAAACATGCA--G------AA---A------G----GA-ATAA-GTACAG-T---T-T------TT-----------TTT--ACAAGCAATCACTACCTGGAAG--------------------------TCACCAAAAGTAAACTT-------TT-TC-T--CA-TCGCATTTACGTTCAAACTAACAATTATTAGCCatgc
gi|45486 : TT-TTTTATCACTTATTTTAGTACAGTTA----CATACATAAACATGCA--T------GA---A------G----AC-TTTA-G-AGAT-------T------TT-----------TTT--ACAAACAATCACCACCTGAAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAATTGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAATTATGAGTC
gi|45487 : TT-TTTTATCACTTATTTTAGTATAATTATGTACGTGCATGAACATGCA--T------TC---A------G----TC-TTAA-G-AAAT-GTTTT-T------TT-----------TTT--ACCAACAATCAACAACCGAAGGTTAAA-GTTGAAT--TTTT
gi|45488 : TT-TTTTATCACTTATTTTAGTACAGTTA----CATACATAAACATGCA--T------GA---A------G----AC-TTTA-G-AGAT-------T------TT-----------TTT--ACAAACAATCACCACCTGAAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAATTGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAATTATGAGTC
gi|45489 : TT-TTTTATCACTTATTTATGTATATTTA----CGTGTATGAACATGCAATG------CAGTCA------G----TC-TTGA-G-AAA--G---T-T------TT-----------TTT------ACAATCAACAACCGAAGGTTAAA-GGGGAAT--TTTTTGTTATTTCACCAAATGGAAAATTCTC-ATTTT-TT-T--CA-CCGAATTGACGTTCAAACTAACAATTATTAGCTG
gi|45490 : TT-TTTTATCACTTATTTTAGTATAATTATGTACGTGCATGAACATGCA--T------TC---A------G----TC-TTAA-G-AAAT-GTTTT-T------TT-----------TTT--ACCAACAATCAACAACCGAAGGTTAAA-GTTGAAT--TTTT
gi|45491 : T-TTTTATCACTAACTTTAGTACAGTTA----CACACATGAACATACC--G-------A---A------G----TC-TTAA-G-AAAT-G---T-T------TTTTTT-------TTT--ACAAACAATCACTACCCGAAGGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAAGGAAAATACTC-A--TT-TTAT--CA-CCGAATCTA
gi|45492 : T-TTTTATCACTTATTTAAGTACAGTTA----CACACATGAATACACC--G------GA---A------G----TC-TTAA-A-AAAT-G---T-TGTTGT-TT-----------TTT--ACAAACAATCATTACCCGAAGGTTAAA-GGGGAAC--TTTTTCTCATTTCACCGAAAGGAAAATACTC-A--TT-TTAT--CA-CCGAATTCAACTTCAAACTAACAATTATTAGCCG
gi|45493 : T-TTTTATAACTTATTTTAGTACAGTTG----CCTGCATGAACACACC--G------TC---A------G----TCGTT--------T-T---T-T------TT-----------TTT--ACAAACAATCACCACCCACAAGTTATA-GGGGAACCGTTTTTCTCATTTCACCAAAAGTAATATTATC-ATTTT-TT-T--CA-CCGATTTAACGTTCAAAGTAACAATTATAAGC
gi|45494 : T-TTTTATAACTTATTTAAGTTCAGTTA----CAAGCATGAACATGCA--T------GA---A------G----GC-TTATTG-AAAT-A---T-T------TT-----------TTT--A---ACAATCACCACCCGAAAGTTA---GATGAAC--TTTTTCTCATTTCACAAAATGGAAAAGTCTC-T--TT-TT-T--CA-CCGAATTTACGTTCAAACAAACAATTATGAGCC
gi|45495 : T-TTTTATCATTTACTTTAGCACAGTTA----CATGCATAAACGTACA--G------AA---A------G----GC-TTAA-G-AAAC-G---C-G------TT-----------TTT--A
gi|45496 : -TTTTATGATTTATTTTAGTCAAGTTA----CATGCATGAACATACA--G------GA---A------G----AC-GAAA-T-AAAT-G---TAT------TG-----------TTT--ACAAACAATCTTAACCCGAAAGTTAAA-GGCGAAC---TTTTCTAACTTTACCGAAATGGAAATTCTCAA--TT-TT-T--TA-CCTAATTCACGTTCAAATTAACAagaa
gi|45497 : ATTTATTTTAGTGTATTTA----TATGCAAGAACATACC--G------AA---A------G----TC-TTAA-G-AAAT-A---T-T------TT------------TT--ACAAACAATCACTACTCAGAAATTAAA-GGGGAAC--TTTTTATCATTTCACCAAAACGAAAACTTTC-A--TT-TT-TA-TA-ACGAATCTACTTTCAAATTAACAATGCTTAGCCG
gi|45498 : ATGCGAAAACATTCA--G------GG---A------C----AT-CCCA-G-AAATTA---T-C------AT-----------TTA--ACAAACAATCACTACCCGGGATTTAAA-GGTGAAC--TTTTTCTCATTTCACAAAAAAGAAATTTCTC-A--TT-TT-T--AAGCCGAAT
gi|45499 : gctttAAT-T---T-T------TT-----------TTT--ACAAACAATCACCATCCGAAAGTTGAA-GGGGAAC--TTTTTCTCATTTCGCCAAATGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAAATATGAGCC
gi|45500 : gtttcag--TTCTTCTCATTTCACCAAAAGGGAAATTCT--A--TT-TT-TTTCA-CCGTATTTACGTTCAAACTTACAATTATTAGCC
Alignments
lowQualScore : 111111 11111111111
lowQualScore : 3 1 33 6666 33 777777 222 444444 33333 1 1 1 77777 1 222222 00000000000 11 1 11 1 77 1 8 33 1 1
lowQualScore : . . .. .... .. ...... ... ...... ..... . . . ..... . ...... ........... .. . .. . .. . . .. . .
lowQualScore : 0 0 99 1111 33 444444 444 000000 99999 4 4 4 55555 3 888888 55555555555 88 4 99 5 00 5 9 55 5 1
consensus : TTT-TTTTATCACTTATTTTAGTNCGNTTA----CATGCATGAACATGCA--G------GA---A------G----NC-TTAA-G-AAAT-G---T-T------TT-----------TTT--ACAAACAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAATTATTAGCCG
Reference ( family-645 ) : TTT-TTTTATCACTTATTTTAGTNCGNTTA----CATGCATGAACATGCA--G------GA---A------G----NC-TTAA-G-AAAT-G---T-T------TT-----------TTT--ACAAACAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAATTATTAGCCG
gi|45470 : TTT-TTTTATCATTGATTTTAGTTCGCTTT----CATGTATGAACATGCA--G------GA---A------G----GC-TTAA-G-AACT-G---T-T------TT-----------ATA--ACAAACAATCACTACCCGGAAGTTAAA-GTGGAAC--TTTTGCTCATTTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTGAAACTAACACTTATTAGCCG
gi|45471 : TTT-TTTTATCATTGATTTGAGTTCTCTTT----CATGCATGAACATGCA--G------GA---A------A----GT-TTAA-G-AACT-G---T-T------TT-----------ATT--ACAAATAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTGCTCATTTCACCAAAAGGGAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTGAAACTAACACTTATTAGCCG
gi|45472 : TTT-TTTTATCATTGATTTTAGTTCGCTTT----CATGCATAAACATGCA--G------GA---A------G----GT-TTAA-G-AACT-G---T-TGTT---TT-----------TTT--ACAAACAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAATGGAAATTTCTA-A--TT-TT-T--C----------ACGTTCAAACTAACAATTAT
gi|45473 : TTT-TTTTATTA-TGATTTTAGTTCGTTTT----CATGCATAAACATGCA--G------GA---A------T----GT-TTAA-G-AACT-G---T-TGTTGTTTT-----------TTT--ACAAACAATCACTACCCGAAGGTTAAA-GGGGAAC--GTTTTCTCATTTCACCAAAAGGAAAATACTC-G--TT-TTAT--CA-CCGAATTTAACTTCAAACTAACAATTATTAGCCGatgctg
gi|45474 : TTTATTTTATCACTTATTCTAGTGCATTTA----CATG----------CA--G------TA---ACACATCGTTATTC-TTAA-G-ATAT-G-----T------TT-----------TTT--ACAAGCAATCAGCACCCGGCAATTAAA-GGGGAAC--TTTTTATCAATTCACCTAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGACTTTACGTTCAAACTAACAATTATGAGTC
gi|45475 : TTT-TTTTATAACTTATTTTAGTAC----A----CATG--TGAACATACC--G------GA---A------G----TC-TTAA-G-AAAT-A---T-T------TT-----------TTA--ACCAA
gi|45476 : TTT-TTTTATCATTGATTTTAGTTCGTTTT----CATGTATGAACATGCA--G------GA---A------G----GC-TTAA-G-AACT-G---T-T------TT-----------ATA--ACAAACAATCACTACCCGGAAGTTAAA-GTCGAAC--TTTTGCTCAATTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTGAAACTAACACTTATTAGCCG
gi|45477 : TTTATTTTATCACTTATTCTAGTGCATTTA----CAT-CGT---TAT-----------------------------TC-TTAA-A-ATAT-----T-T------TT-----------TTT--ACAAGCAATCAGCACCCGGAAATTAAA-GGGGAAC--TTTATATCAATTCAACAAAAAGAAAATTCTC-A--TT-TT-T--CA-CCGACTTAACGTTCAAACTAACAATTA
gi|45478 : TTT-TTTTATCATTGATTTTAGTTCGCTTT----CATGCATAAACATGCA--G------GA---A------G----GC-TTAA-G-AACT-G---T-T------TTA----------TTT--A--AACAATCACTACCCGGAAGTTAAA-GAGGAGT--TTTTTCTCATTTCACCAAATGGAAAATTCTA-A--TT-TT-T--CA-CCGAATTTATGTTCAAACTAAAAATTATAAGCCG
gi|45479 : TTG-TTTTATTATTGATTTTAGTTTGCTTA----CATGCATGAACATGCA--ATGCAC-GA---A------G----GC-TTAA-G-AACT-G---T-T------TT-----------ATT--ACGAACAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTTCTCATTTGACCAAAAGGAAAATTCTC-AT-TT-TT-T--CA-CCGAATTTACGTTCACACTAACAATTATAAGCCG
gi|45480 : TTT-TTTTATCACTTATTTTAGTGCAGTTA----CATACATGAACATACC--G------GA---A------G----TC-TTAA-G-AAAT-G---T-T------TT-----------TTTTAACAAACAATCACTACCCAAAGTTTAAA-GGGGAAC--TTTTTCTTATTTGACCAAAAGGAAAATATTC-A--TTATA-T--CA-CC-AATTTACGTTCAAACTAATAATTATCAGCCG
gi|45481 : TTT-TTTCCCCACTTATTTTAGAGCAGTTA----CACACATGAACATACC--G------GA---A------G----TC-TTAA-G-AAAT-G---T-T------TTTTTTTTTTTTTTTT--ACAAACAATCAATTCCCAAAGGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAATGAAAATACTC-A--TT-TTAT--CA-CCGAATTTACGTTCAAACTAACAATTATTAGCCG
gi|45482 : TTT-TCTTATCACTTATTTTAGTGCAGTTA----CACACATGAACATACC--G------AA---A------G----TC-TTAA-G-AAAT-GTT-T-T------TT-----------TTT--A-AAACAATCACTACCCGAAGGTTAAAGGGGGAAC--TTTTTCTCATTTCACTAAAAGGAAAATACTC-A--TT-TCAT--CA-CCGAATTTAATAGCAAACTAACGATAATTAGCC
gi|45483 : TTT-TTTTATTA-TGATTTTAGTTCGTTTT----CATGCATAAACATGCA--G------GA---A------T----GT-TTAA-G-AACT-G---T-TGTTTT-TT-----------TTT--ACAAACAATCACTACCCGAAGGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAAGGAAAATACTC-A--TT-TTAT--CA-CCGAATTTAACTTCAAACTAACAATTATTAGCCG
gi|45484 : TTT-TCTTATTATTGATTTTAGCCCGCTTT----CATGCATGAACATGCAT-GAACCTTGA---A------G----GC-TTAA-G-AGCA-G---T-T------TT-----------ATT--ACAAACAATCACTACCTTGAAGTTTAA-GGGGAAC--TTTTTCTCATTTCACCAAATGGAAAATTCTC-AT-TT-TT-T--CA-CCGAATTTACAATCAAACTAACAATTAT
gi|45485 : TTT-GTTT-TCATTTATTTTAGTCCGCTTA----CATGTATAAACATGCA--G------AA---A------G----GA-ATAA-GTACAG-T---T-T------TT-----------TTT--ACAAGCAATCACTACCTGGAAG--------------------------TCACCAAAAGTAAACTT-------TT-TC-T--CA-TCGCATTTACGTTCAAACTAACAATTATTAGCCatgc
gi|45486 : TT-TTTTATCACTTATTTTAGTACAGTTA----CATACATAAACATGCA--T------GA---A------G----AC-TTTA-G-AGAT-------T------TT-----------TTT--ACAAACAATCACCACCTGAAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAATTGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAATTATGAGTC
gi|45487 : TT-TTTTATCACTTATTTTAGTATAATTATGTACGTGCATGAACATGCA--T------TC---A------G----TC-TTAA-G-AAAT-GTTTT-T------TT-----------TTT--ACCAACAATCAACAACCGAAGGTTAAA-GTTGAAT--TTTT
gi|45488 : TT-TTTTATCACTTATTTTAGTACAGTTA----CATACATAAACATGCA--T------GA---A------G----AC-TTTA-G-AGAT-------T------TT-----------TTT--ACAAACAATCACCACCTGAAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAATTGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAATTATGAGTC
gi|45489 : TT-TTTTATCACTTATTTATGTATATTTA----CGTGTATGAACATGCAATG------CAGTCA------G----TC-TTGA-G-AAA--G---T-T------TT-----------TTT------ACAATCAACAACCGAAGGTTAAA-GGGGAAT--TTTTTGTTATTTCACCAAATGGAAAATTCTC-ATTTT-TT-T--CA-CCGAATTGACGTTCAAACTAACAATTATTAGCTG
gi|45490 : TT-TTTTATCACTTATTTTAGTATAATTATGTACGTGCATGAACATGCA--T------TC---A------G----TC-TTAA-G-AAAT-GTTTT-T------TT-----------TTT--ACCAACAATCAACAACCGAAGGTTAAA-GTTGAAT--TTTT
gi|45491 : T-TTTTATCACTAACTTTAGTACAGTTA----CACACATGAACATACC--G-------A---A------G----TC-TTAA-G-AAAT-G---T-T------TTTTTT-------TTT--ACAAACAATCACTACCCGAAGGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAAGGAAAATACTC-A--TT-TTAT--CA-CCGAATCTA
gi|45492 : T-TTTTATCACTTATTTAAGTACAGTTA----CACACATGAATACACC--G------GA---A------G----TC-TTAA-A-AAAT-G---T-TGTTGT-TT-----------TTT--ACAAACAATCATTACCCGAAGGTTAAA-GGGGAAC--TTTTTCTCATTTCACCGAAAGGAAAATACTC-A--TT-TTAT--CA-CCGAATTCAACTTCAAACTAACAATTATTAGCCG
gi|45493 : T-TTTTATAACTTATTTTAGTACAGTTG----CCTGCATGAACACACC--G------TC---A------G----TCGTT--------T-T---T-T------TT-----------TTT--ACAAACAATCACCACCCACAAGTTATA-GGGGAACCGTTTTTCTCATTTCACCAAAAGTAATATTATC-ATTTT-TT-T--CA-CCGATTTAACGTTCAAAGTAACAATTATAAGC
gi|45494 : T-TTTTATAACTTATTTAAGTTCAGTTA----CAAGCATGAACATGCA--T------GA---A------G----GC-TTATTG-AAAT-A---T-T------TT-----------TTT--A---ACAATCACCACCCGAAAGTTA---GATGAAC--TTTTTCTCATTTCACAAAATGGAAAAGTCTC-T--TT-TT-T--CA-CCGAATTTACGTTCAAACAAACAATTATGAGCC
gi|45495 : T-TTTTATCATTTACTTTAGCACAGTTA----CATGCATAAACGTACA--G------AA---A------G----GC-TTAA-G-AAAC-G---C-G------TT-----------TTT--A
gi|45496 : -TTTTATGATTTATTTTAGTCAAGTTA----CATGCATGAACATACA--G------GA---A------G----AC-GAAA-T-AAAT-G---TAT------TG-----------TTT--ACAAACAATCTTAACCCGAAAGTTAAA-GGCGAAC---TTTTCTAACTTTACCGAAATGGAAATTCTCAA--TT-TT-T--TA-CCTAATTCACGTTCAAATTAACAagaa
gi|45497 : ATTTATTTTAGTGTATTTA----TATGCAAGAACATACC--G------AA---A------G----TC-TTAA-G-AAAT-A---T-T------TT------------TT--ACAAACAATCACTACTCAGAAATTAAA-GGGGAAC--TTTTTATCATTTCACCAAAACGAAAACTTTC-A--TT-TT-TA-TA-ACGAATCTACTTTCAAATTAACAATGCTTAGCCG
gi|45498 : ATGCGAAAACATTCA--G------GG---A------C----AT-CCCA-G-AAATTA---T-C------AT-----------TTA--ACAAACAATCACTACCCGGGATTTAAA-GGTGAAC--TTTTTCTCATTTCACAAAAAAGAAATTTCTC-A--TT-TT-T--AAGCCGAAT
gi|45499 : gctttAAT-T---T-T------TT-----------TTT--ACAAACAATCACCATCCGAAAGTTGAA-GGGGAAC--TTTTTCTCATTTCGCCAAATGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAAATATGAGCC
gi|45500 : gtttcag--TTCTTCTCATTTCACCAAAAGGGAAATTCT--A--TT-TT-TTTCA-CCGTATTTACGTTCAAACTTACAATTATTAGCC
blockSeqs : A T TC TGTA AT AACCTT GTC CACATC TTATT G T T GTTT A GTTGTT TTTTTTTTTTT TA G CG A TT A A TT G T
blockSeqs : A T GC TGTA T TGCAC . . G . . . GTTT . GTTTT TTTT . . . . TT . A A . T
blockSeqs : . T GT . . . . . G . . . GTT . GTTGT A . . . . T . A . . G
blockSeqs : . G AT . . . . . G . . . TA . GTT . . . . . T . A . . T
blockSeqs : . A GT . . . . . T . . . G . . . . . . . . . A . . A
blockSeqs : . T AT . . . . . G . . . G . . . . . . . . . A . . A
blockSeqs : . G GC . . . . . T . . . G . . . . . . . . . . . . C
blockSeqs : . T GC . . . . . G . . . G . . . . . . . . . . . . T
blockSeqs : . T AG . . . . . G . . . A . . . . . . . . . . . . T
blockSeqs : . G AG . . . . . T . . . G . . . . . . . . . . . . T
blockSeqs : . G AG . . . . . T . . . G . . . . . . . . . . . . T
blockSeqs : . G GT . . . . . T . . . G . . . . . . . . . . . . G
blockSeqs : . T GC . . . . . G . . . G . . . . . . . . . . . . G
blockSeqs : . C GC . . . . . G . . . G . . . . . . . . . . . . T
blockSeqs : . C AG . . . . . G . . . G . . . . . . . . . . . . T
blockSeqs : . A AA . . . . . A . . . G . . . . . . . . . . . . A
blockSeqs : . A AG . . . . . T . . . T . . . . . . . . . . . . G
blockSeqs : . A AT . . . . . A . . . G . . . . . . . . . . . . T
blockSeqs : . A AA . . . . . T . . . G . . . . . . . . . . . . G
blockSeqs : . A AG . . . . . T . . . G . . . . . . . . . . . . T
blockSeqs : . A AG . . . . . T . . . T . . . . . . . . . . . .
blockSeqs : . A AG . . . . . T . . . A . . . . . . . . . . . .
blockSeqs : . A AG . . . . . T . . . G . . . . . . . . . . . .
blockSeqs : . T AG . . . . . G . . . G . . . . . . . . . . . .
blockSeqs : . A AG . . . . . G . . . A . . . . . . . . . . . .
blockSeqs : . C AT . . . . . A . . . T . . . . . . . . . . . .
blockSeqs : G . . . . . . T . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : TTT-TTTTATCACTTATTTTAGTNCGNTTA----CATGCATGAACATGCA--G------GA---A------G----NC-TTAA-G-AAAT-G---T-T------TT-----------TTT--ACAAACAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAATTATTAGCCG
finalCons : TTT-TTTTATCACTTATTTTAGTNCGNTTA----CATGCATGAACATGCA--G------GA---A------G----NC-TTAA-G-AAAT-G---T-T------TT-----------TTT--ACAAACAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAATTATTAGCCG
Alignments
lowQualScore : 111111 11111111111
lowQualScore : 3 1 33 6666 33 777777 222 444444 33333 1 1 1 77777 1 222222 00000000000 11 1 11 1 77 1 8 33 1 1
lowQualScore : . . .. .... .. ...... ... ...... ..... . . . ..... . ...... ........... .. . .. . .. . . .. . .
lowQualScore : 0 0 99 1111 33 444444 444 000000 99999 4 4 4 55555 3 888888 55555555555 88 4 99 5 00 5 9 55 5 1
consensus : TTT-TTTTATCACTTATTTTAGTNCGNTTA----CATGCATGAACATGCA--G------GA---A------G----NC-TTAA-G-AAAT-G---T-T------TT-----------TTT--ACAAACAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAATTATTAGCCG
Reference ( family-645 ) : TTT-TTTTATCACTTATTTTAGTNCGNTTA----CATGCATGAACATGCA--G------GA---A------G----NC-TTAA-G-AAAT-G---T-T------TT-----------TTT--ACAAACAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAATTATTAGCCG
gi|45470 : TTT-TTTTATCATTGATTTTAGTTCGCTTT----CATGTATGAACATGCA--G------GA---A------G----GC-TTAA-G-AACT-G---T-T------TT-----------ATA--ACAAACAATCACTACCCGGAAGTTAAA-GTGGAAC--TTTTGCTCATTTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTGAAACTAACACTTATTAGCCG
gi|45471 : TTT-TTTTATCATTGATTTGAGTTCTCTTT----CATGCATGAACATGCA--G------GA---A------A----GT-TTAA-G-AACT-G---T-T------TT-----------ATT--ACAAATAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTGCTCATTTCACCAAAAGGGAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTGAAACTAACACTTATTAGCCG
gi|45472 : TTT-TTTTATCATTGATTTTAGTTCGCTTT----CATGCATAAACATGCA--G------GA---A------G----GT-TTAA-G-AACT-G---T-TGTT---TT-----------TTT--ACAAACAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAATGGAAATTTCTA-A--TT-TT-T--C----------ACGTTCAAACTAACAATTAT
gi|45473 : TTT-TTTTATTA-TGATTTTAGTTCGTTTT----CATGCATAAACATGCA--G------GA---A------T----GT-TTAA-G-AACT-G---T-TGTTGTTTT-----------TTT--ACAAACAATCACTACCCGAAGGTTAAA-GGGGAAC--GTTTTCTCATTTCACCAAAAGGAAAATACTC-G--TT-TTAT--CA-CCGAATTTAACTTCAAACTAACAATTATTAGCCGatgctg
gi|45474 : TTTATTTTATCACTTATTCTAGTGCATTTA----CATG----------CA--G------TA---ACACATCGTTATTC-TTAA-G-ATAT-G-----T------TT-----------TTT--ACAAGCAATCAGCACCCGGCAATTAAA-GGGGAAC--TTTTTATCAATTCACCTAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGACTTTACGTTCAAACTAACAATTATGAGTC
gi|45475 : TTT-TTTTATAACTTATTTTAGTAC----A----CATG--TGAACATACC--G------GA---A------G----TC-TTAA-G-AAAT-A---T-T------TT-----------TTA--ACCAA
gi|45476 : TTT-TTTTATCATTGATTTTAGTTCGTTTT----CATGTATGAACATGCA--G------GA---A------G----GC-TTAA-G-AACT-G---T-T------TT-----------ATA--ACAAACAATCACTACCCGGAAGTTAAA-GTCGAAC--TTTTGCTCAATTCACCAAAAGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTGAAACTAACACTTATTAGCCG
gi|45477 : TTTATTTTATCACTTATTCTAGTGCATTTA----CAT-CGT---TAT-----------------------------TC-TTAA-A-ATAT-----T-T------TT-----------TTT--ACAAGCAATCAGCACCCGGAAATTAAA-GGGGAAC--TTTATATCAATTCAACAAAAAGAAAATTCTC-A--TT-TT-T--CA-CCGACTTAACGTTCAAACTAACAATTA
gi|45478 : TTT-TTTTATCATTGATTTTAGTTCGCTTT----CATGCATAAACATGCA--G------GA---A------G----GC-TTAA-G-AACT-G---T-T------TTA----------TTT--A--AACAATCACTACCCGGAAGTTAAA-GAGGAGT--TTTTTCTCATTTCACCAAATGGAAAATTCTA-A--TT-TT-T--CA-CCGAATTTATGTTCAAACTAAAAATTATAAGCCG
gi|45479 : TTG-TTTTATTATTGATTTTAGTTTGCTTA----CATGCATGAACATGCA--ATGCAC-GA---A------G----GC-TTAA-G-AACT-G---T-T------TT-----------ATT--ACGAACAATCACTACCCGGAAGTTAAA-GGGGAAC--TTTTTCTCATTTGACCAAAAGGAAAATTCTC-AT-TT-TT-T--CA-CCGAATTTACGTTCACACTAACAATTATAAGCCG
gi|45480 : TTT-TTTTATCACTTATTTTAGTGCAGTTA----CATACATGAACATACC--G------GA---A------G----TC-TTAA-G-AAAT-G---T-T------TT-----------TTTTAACAAACAATCACTACCCAAAGTTTAAA-GGGGAAC--TTTTTCTTATTTGACCAAAAGGAAAATATTC-A--TTATA-T--CA-CC-AATTTACGTTCAAACTAATAATTATCAGCCG
gi|45481 : TTT-TTTCCCCACTTATTTTAGAGCAGTTA----CACACATGAACATACC--G------GA---A------G----TC-TTAA-G-AAAT-G---T-T------TTTTTTTTTTTTTTTT--ACAAACAATCAATTCCCAAAGGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAATGAAAATACTC-A--TT-TTAT--CA-CCGAATTTACGTTCAAACTAACAATTATTAGCCG
gi|45482 : TTT-TCTTATCACTTATTTTAGTGCAGTTA----CACACATGAACATACC--G------AA---A------G----TC-TTAA-G-AAAT-GTT-T-T------TT-----------TTT--A-AAACAATCACTACCCGAAGGTTAAAGGGGGAAC--TTTTTCTCATTTCACTAAAAGGAAAATACTC-A--TT-TCAT--CA-CCGAATTTAATAGCAAACTAACGATAATTAGCC
gi|45483 : TTT-TTTTATTA-TGATTTTAGTTCGTTTT----CATGCATAAACATGCA--G------GA---A------T----GT-TTAA-G-AACT-G---T-TGTTTT-TT-----------TTT--ACAAACAATCACTACCCGAAGGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAAGGAAAATACTC-A--TT-TTAT--CA-CCGAATTTAACTTCAAACTAACAATTATTAGCCG
gi|45484 : TTT-TCTTATTATTGATTTTAGCCCGCTTT----CATGCATGAACATGCAT-GAACCTTGA---A------G----GC-TTAA-G-AGCA-G---T-T------TT-----------ATT--ACAAACAATCACTACCTTGAAGTTTAA-GGGGAAC--TTTTTCTCATTTCACCAAATGGAAAATTCTC-AT-TT-TT-T--CA-CCGAATTTACAATCAAACTAACAATTAT
gi|45485 : TTT-GTTT-TCATTTATTTTAGTCCGCTTA----CATGTATAAACATGCA--G------AA---A------G----GA-ATAA-GTACAG-T---T-T------TT-----------TTT--ACAAGCAATCACTACCTGGAAG--------------------------TCACCAAAAGTAAACTT-------TT-TC-T--CA-TCGCATTTACGTTCAAACTAACAATTATTAGCCatgc
gi|45486 : TT-TTTTATCACTTATTTTAGTACAGTTA----CATACATAAACATGCA--T------GA---A------G----AC-TTTA-G-AGAT-------T------TT-----------TTT--ACAAACAATCACCACCTGAAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAATTGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAATTATGAGTC
gi|45487 : TT-TTTTATCACTTATTTTAGTATAATTATGTACGTGCATGAACATGCA--T------TC---A------G----TC-TTAA-G-AAAT-GTTTT-T------TT-----------TTT--ACCAACAATCAACAACCGAAGGTTAAA-GTTGAAT--TTTT
gi|45488 : TT-TTTTATCACTTATTTTAGTACAGTTA----CATACATAAACATGCA--T------GA---A------G----AC-TTTA-G-AGAT-------T------TT-----------TTT--ACAAACAATCACCACCTGAAAGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAATTGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAATTATGAGTC
gi|45489 : TT-TTTTATCACTTATTTATGTATATTTA----CGTGTATGAACATGCAATG------CAGTCA------G----TC-TTGA-G-AAA--G---T-T------TT-----------TTT------ACAATCAACAACCGAAGGTTAAA-GGGGAAT--TTTTTGTTATTTCACCAAATGGAAAATTCTC-ATTTT-TT-T--CA-CCGAATTGACGTTCAAACTAACAATTATTAGCTG
gi|45490 : TT-TTTTATCACTTATTTTAGTATAATTATGTACGTGCATGAACATGCA--T------TC---A------G----TC-TTAA-G-AAAT-GTTTT-T------TT-----------TTT--ACCAACAATCAACAACCGAAGGTTAAA-GTTGAAT--TTTT
gi|45491 : T-TTTTATCACTAACTTTAGTACAGTTA----CACACATGAACATACC--G-------A---A------G----TC-TTAA-G-AAAT-G---T-T------TTTTTT-------TTT--ACAAACAATCACTACCCGAAGGTTAAA-GGGGAAC--TTTTTCTCATTTCACCAAAAGGAAAATACTC-A--TT-TTAT--CA-CCGAATCTA
gi|45492 : T-TTTTATCACTTATTTAAGTACAGTTA----CACACATGAATACACC--G------GA---A------G----TC-TTAA-A-AAAT-G---T-TGTTGT-TT-----------TTT--ACAAACAATCATTACCCGAAGGTTAAA-GGGGAAC--TTTTTCTCATTTCACCGAAAGGAAAATACTC-A--TT-TTAT--CA-CCGAATTCAACTTCAAACTAACAATTATTAGCCG
gi|45493 : T-TTTTATAACTTATTTTAGTACAGTTG----CCTGCATGAACACACC--G------TC---A------G----TCGTT--------T-T---T-T------TT-----------TTT--ACAAACAATCACCACCCACAAGTTATA-GGGGAACCGTTTTTCTCATTTCACCAAAAGTAATATTATC-ATTTT-TT-T--CA-CCGATTTAACGTTCAAAGTAACAATTATAAGC
gi|45494 : T-TTTTATAACTTATTTAAGTTCAGTTA----CAAGCATGAACATGCA--T------GA---A------G----GC-TTATTG-AAAT-A---T-T------TT-----------TTT--A---ACAATCACCACCCGAAAGTTA---GATGAAC--TTTTTCTCATTTCACAAAATGGAAAAGTCTC-T--TT-TT-T--CA-CCGAATTTACGTTCAAACAAACAATTATGAGCC
gi|45495 : T-TTTTATCATTTACTTTAGCACAGTTA----CATGCATAAACGTACA--G------AA---A------G----GC-TTAA-G-AAAC-G---C-G------TT-----------TTT--A
gi|45496 : -TTTTATGATTTATTTTAGTCAAGTTA----CATGCATGAACATACA--G------GA---A------G----AC-GAAA-T-AAAT-G---TAT------TG-----------TTT--ACAAACAATCTTAACCCGAAAGTTAAA-GGCGAAC---TTTTCTAACTTTACCGAAATGGAAATTCTCAA--TT-TT-T--TA-CCTAATTCACGTTCAAATTAACAagaa
gi|45497 : ATTTATTTTAGTGTATTTA----TATGCAAGAACATACC--G------AA---A------G----TC-TTAA-G-AAAT-A---T-T------TT------------TT--ACAAACAATCACTACTCAGAAATTAAA-GGGGAAC--TTTTTATCATTTCACCAAAACGAAAACTTTC-A--TT-TT-TA-TA-ACGAATCTACTTTCAAATTAACAATGCTTAGCCG
gi|45498 : ATGCGAAAACATTCA--G------GG---A------C----AT-CCCA-G-AAATTA---T-C------AT-----------TTA--ACAAACAATCACTACCCGGGATTTAAA-GGTGAAC--TTTTTCTCATTTCACAAAAAAGAAATTTCTC-A--TT-TT-T--AAGCCGAAT
gi|45499 : gctttAAT-T---T-T------TT-----------TTT--ACAAACAATCACCATCCGAAAGTTGAA-GGGGAAC--TTTTTCTCATTTCGCCAAATGGAAAATTCTC-A--TT-TT-T--CA-CCGAATTTACGTTCAAACTAACAAATATGAGCC
gi|45500 : gtttcag--TTCTTCTCATTTCACCAAAAGGGAAATTCT--A--TT-TT-TTTCA-CCGTATTTACGTTCAAACTTACAATTATTAGCC