lowQualScore : 1111
lowQualScore : 4 2222 6 1 3333 77777777777
lowQualScore : . .... . . .... ...........
lowQualScore : 8 9999 3 4 2222 33333333333
consensus : GGTTCAT----ACACTCGTTATT-GACGCCTGTGAATTTT-C-ACTTTTGGG-----------GGTAGCTTCGAAA
Reference ( gi|5076 ) : GGTTTAT----ACACCCGTTATT-GACGCCTGTGAATTTT-T-GCTTTTGGG-----------GGTAGCTTCGAAA
gi|5077 : GGTTCAT----GCACTCGTTATT-GACGCCTGT-AATTTT-TAACTTTTGGG-----------GGTAGCTTCGAAA
gi|5078 : GGTTCAT----ACACTTGTTATT-GACACCTGTGAATGTT-C-ACTTTTGGG-----------AGTAACTTCGAAA
gi|5082 : GGTTCAT----ACACTCGTTATT-GACGCCCGTGAGATTT-C-ATTTTTGGG-----------GGTAGTTTCAAAA
gi|5080 : GGTTCAT----ACAATTATTATT-GACATCTGTGAATTTT-C-ACTTTCGGG-----------GGTAGCTTCGAAA
gi|5083 : GGTTCAT----ACATTCGTTATT-GACGCCTGTGGATTTT-C-ACGTTTGTT-----------GGTAGCTTCGAAA
gi|5084 : GGTCCAT----ACACTTGTTATT-GACGCCTGTGAAATTT-C-AATTTTGAG-----------GGTAGTTTCGAAA
gi|5085 : GGTTCAT----ACATTCGTGATG-GACGCCTGTGAATTTT-C-A-TTTTAGG-----------GGGAGCTTCGAAA
gi|5081 : GGTTTAT----ACACTCATTATT-GATGCCTGTGATTTTT-C-ACTTTTGGG-----------GTAAGCGTCTAAA
gi|5089 : GGTTCAT----ACAGTCGTTATT-GAAGCCTGTGAATTTA-C-AC-TTTGGG-----------GGTAGCTGCGGAA
gi|5088 : GGTTCAT----ACACTTATTATG-AATGCCTGTGAATTTT-C-ACTTTAGGA-----------GGTAGCTTCAAAA
gi|5091 : GGTTTGT----ACAATCATTATT-GACGCCTGTGAATTTT-C-ACTTTTGTA-----------TGTAGCT
gi|5093 : GGTTCATTGTAACACTCGTTATTTGACGCCTGTGAATTTC-C-ATTCTTG
gi|5095 : TTAAT----ATTCTCGTTATT-GACGCCTGTGAATTAT-C-ACTTTTGTG-----------GATAGCTTCGAAA
gi|5096 : aTTCAT----TCACTCGTTTTT-GACGCATGTGAATTTT-C-ACTTGTGGG-----------GGTAGGTTCGAAA
gi|5097 : TTCAC----ACACTCGTTAGT-GATGCCTGTGAACTTG-C-ACTTTTCGG-----------GGTAGCTT-GAAA
gi|5099 : TTCAT----ACACTCGTTAAT-GACGTCTGTGAATTTT-C-ACTCT
gi|5079 : AT----ACACTCGTTAGT-GATGCCTGTGAATTTT-C-ATTTTTGGG-----------GATAGCTTCGAGA
gi|5086 : gatacAT----ACACTCGTTATT-GACGCCTGTGAATTTT-C-ACTTTTTAG-----------TGTAGAATCGAAA
gi|5087 : gatacAT----ACACTCGTTATT-GACGCCTGTGCATTTT-C-ACTTTGTAG-----------GGTAGCTGCGGAA
gi|5092 : gatacAT----GCACTCGTTATT-GACCTCTGTGAATTTTCT-G-TTTTGGA-----------GGTAGTTTCAAA
gi|5100 : gatacAT----ACACTCGTTATT-GATGCCGGTGAATTTC-C-ACTTTTGGT-----------TGTAGCTTAAAAA
gi|5103 : cAT----ACACTTGTTATT-GATGCCTATGAATTTT-C-GCTTGTGGGGTGGGGTGTGTGGTAGCTTCAAAA
gi|5098 : AT----A-ACACGTT-TT-AACGTCTGTGAATTTT---ACTTTTTGG-----------GGTAGCTTCGAAA
gi|5090 : ttcaAT----GCACTCGTAAAT-GGCGCCTGTGATTTTT-C-ACTTTTGGG-----------GG-AACTTCGAAA
gi|5104 : gatacAT----ACATTCGTTACT-GACGCCTGTAAAGTTT-C-ATTTTTGGA-----------GGAAACTTCAAAA
gi|5101 : AT----GCACTTGGTATT-GATGTTTGTGAATTTT-C-ACTTTTTGG-----------AA-AGGTTTGAAA
gi|5102 : cAT----GCACTCGTTATT-GACGCCTATGCATTTT-C-AATTTT
gi|5094 : cT----GCACTCGTTATT-GATGCCTGTGAATTTT-C-ACTTTTGGA-----------GAAAGCTTCAAAA
gi|5105 : attcc----ACACTCGTTATT-GACGCCTATGAATTTT-C-ACTTTTGG
gi|5106 : CGCCTATGAGTTTT-T-ACTTTTAGG-----------GGTAGCTTAGAAA
Alignments
lowQualScore : 1 2222 1 77777777777
lowQualScore : . .... . ...........
lowQualScore : 4 8888 3 00000000000
consensus : GGTTCA-T----ACACTCGTTATT-GACGCCTGTGAATTTTCACTTTTGGG-----------GGTAGCTTCGAAA
Reference ( family-644 ) : GGTTCA-T----ACACTCGTTATT-GACGCCTGTGAATTTTCACTTTTGGG-----------GGTAGCTTCGAAA
gi|5076 : GGTTTA-T----ACACCCGTTATT-GACGCCTGTGAATTTTTGCTTTTGGG-----------GGTAGCTTCGAAA
gi|5077 : GGTTCA-T----GCACTCGTTATT-GACGCCTGTAATTTTTAACTTTTGGG-----------GGTAGCTTCGAAA
gi|5078 : GGTTCA-T----ACACTTGTTATT-GACACCTGTGAATGTTCACTTTTGGG-----------AGTAACTTCGAAA
gi|5079 : CA-T----ACACTCGTTAGT-GATGCCTGTGAATTTTCATTTTTGGG-----------GATAGCTTCGAGA
gi|5080 : gataGGTTCA-T----ACAATTATTATT-GACATCTGTGAATTTTCACTTTCGGG-----------GGTAGCTTCGAAA
gi|5081 : GGTTTA-T----ACACTCATTATT-GATGCCTGTGATTTTTCACTTTTGGG-----------GTAAGCGTCTAAA
gi|5082 : GGTTCA-T----ACACTCGTTATT-GACGCCCGTGAGATTTCATTTTTGGG-----------GGTAGTTTCAAAA
gi|5083 : GGTTCA-T----ACATTCGTTATT-GACGCCTGTGGATTTTCACGTTTGTT-----------GGTAGCTTCGAAA
gi|5084 : GGTCCA-T----ACACTTGTTATT-GACGCCTGTGAAATTTCAATTTTGAG-----------GGTAGTTTCGAAA
gi|5085 : GGTTCA-T----ACATTCGTGATG-GACGCCTGTGAATTTTCA-TTTTAGG-----------GGGAGCTTCGAAA
gi|5086 : CA-T----ACACTCGTTATT-GACGCCTGTGAATTTTCACTTTTTAG-----------TGTAGAATCGAAA
gi|5087 : gataCA-T----ACACTCGTTATT-GACGCCTGTGCATTTTCACTTTGTAG-----------GGTAGCTGCGGAA
gi|5088 : gataGGTTCA-T----ACACTTATTATG-AATGCCTGTGAATTTTCACTTTAGGA-----------GGTAGCTTCAAAA
gi|5089 : GGTTCA-T----ACAGTCGTTATT-GAAGCCTGTGAATTTACAC-TTTGGG-----------GGTAGCTGCGGAA
gi|5090 : CA-T----GCACTCGTAAAT-GGCGCCTGTGATTTTTCACTTTTGGG-----------GG-AACTTCGAAA
gi|5091 : gataGGTTTG-T----ACAATCATTATT-GACGCCTGTGAATTTTCACTTTTGTA-----------TGTAGCT
gi|5092 : CA-T----GCACTCGTTATT-GACCTCTGTGAATTTTCTGTTTTGGA-----------GGTAGTTTCAAA
gi|5093 : gataGGTTCA-TTGTAACACTCGTTATTTGACGCCTGTGAATTTCCATTCTTG
gi|5094 : TTCC-T----GCACTCGTTATT-GATGCCTGTGAATTTTCACTTTTGGA-----------GAAAGCTTCAAAA
gi|5095 : aTTAA-T----ATTCTCGTTATT-GACGCCTGTGAATTATCACTTTTGTG-----------GATAGCTTCGAAA
gi|5096 : aTTCA-T----TCACTCGTTTTT-GACGCATGTGAATTTTCACTTGTGGG-----------GGTAGGTTCGAAA
gi|5097 : TTCA-C----ACACTCGTTAGT-GATGCCTGTGAACTTGCACTTTTCGG-----------GGTAGCTT-GAAA
gi|5098 : TTCAAT----A-ACACGTT-TT-AACGTCTGTGAATTTT-ACTTTTTGG-----------GGTAGCTTCGAAA
gi|5099 : TTCA-T----ACACTCGTTAAT-GACGTCTGTGAATTTTCACTCT
gi|5100 : CA-T----ACACTCGTTATT-GATGCCGGTGAATTTCCACTTTTGGT-----------TGTAGCTTAAAAA
gi|5101 : CA-T----GCACTTGGTATT-GATGTTTGTGAATTTTCACTTTTTGG-----------AA-AGGTTTGAAA
gi|5102 : CA-T----GCACTCGTTATT-GACGCCTATGCATTTTCAATTTT
gi|5103 : A-T----ACACTTGTTATT-GATGCCTATGAATTTTCGCTTGTGGGGTGGGGTGTGTGGTAGCTTCAAAA
gi|5104 : A-T----ACATTCGTTACT-GACGCCTGTAAAGTTTCATTTTTGGA-----------GGAAACTTCAAAA
gi|5105 : ----ACACTCGTTATT-GACGCCTATGAATTTTCACTTTTGG
gi|5106 : CGCCTATGAGTTTTTACTTTTAGG-----------GGTAGCTTAGAAA
Alignments
lowQualScore : 1 2222 1 77777777777
lowQualScore : . .... . ...........
lowQualScore : 4 8888 3 00000000000
consensus : GGTTCA-T----ACACTCGTTATT-GACGCCTGTGAATTTTCACTTTTGGG-----------GGTAGCTTCGAAA
Reference ( family-644 ) : GGTTCA-T----ACACTCGTTATT-GACGCCTGTGAATTTTCACTTTTGGG-----------GGTAGCTTCGAAA
gi|5076 : GGTTTA-T----ACACCCGTTATT-GACGCCTGTGAATTTTTGCTTTTGGG-----------GGTAGCTTCGAAA
gi|5077 : GGTTCA-T----GCACTCGTTATT-GACGCCTGTAATTTTTAACTTTTGGG-----------GGTAGCTTCGAAA
gi|5078 : GGTTCA-T----ACACTTGTTATT-GACACCTGTGAATGTTCACTTTTGGG-----------AGTAACTTCGAAA
gi|5079 : CA-T----ACACTCGTTAGT-GATGCCTGTGAATTTTCATTTTTGGG-----------GATAGCTTCGAGA
gi|5080 : gataGGTTCA-T----ACAATTATTATT-GACATCTGTGAATTTTCACTTTCGGG-----------GGTAGCTTCGAAA
gi|5081 : GGTTTA-T----ACACTCATTATT-GATGCCTGTGATTTTTCACTTTTGGG-----------GTAAGCGTCTAAA
gi|5082 : GGTTCA-T----ACACTCGTTATT-GACGCCCGTGAGATTTCATTTTTGGG-----------GGTAGTTTCAAAA
gi|5083 : GGTTCA-T----ACATTCGTTATT-GACGCCTGTGGATTTTCACGTTTGTT-----------GGTAGCTTCGAAA
gi|5084 : GGTCCA-T----ACACTTGTTATT-GACGCCTGTGAAATTTCAATTTTGAG-----------GGTAGTTTCGAAA
gi|5085 : GGTTCA-T----ACATTCGTGATG-GACGCCTGTGAATTTTCA-TTTTAGG-----------GGGAGCTTCGAAA
gi|5086 : CA-T----ACACTCGTTATT-GACGCCTGTGAATTTTCACTTTTTAG-----------TGTAGAATCGAAA
gi|5087 : gataCA-T----ACACTCGTTATT-GACGCCTGTGCATTTTCACTTTGTAG-----------GGTAGCTGCGGAA
gi|5088 : gataGGTTCA-T----ACACTTATTATG-AATGCCTGTGAATTTTCACTTTAGGA-----------GGTAGCTTCAAAA
gi|5089 : GGTTCA-T----ACAGTCGTTATT-GAAGCCTGTGAATTTACAC-TTTGGG-----------GGTAGCTGCGGAA
gi|5090 : CA-T----GCACTCGTAAAT-GGCGCCTGTGATTTTTCACTTTTGGG-----------GG-AACTTCGAAA
gi|5091 : gataGGTTTG-T----ACAATCATTATT-GACGCCTGTGAATTTTCACTTTTGTA-----------TGTAGCT
gi|5092 : CA-T----GCACTCGTTATT-GACCTCTGTGAATTTTCTGTTTTGGA-----------GGTAGTTTCAAA
gi|5093 : gataGGTTCA-TTGTAACACTCGTTATTTGACGCCTGTGAATTTCCATTCTTG
gi|5094 : TTCC-T----GCACTCGTTATT-GATGCCTGTGAATTTTCACTTTTGGA-----------GAAAGCTTCAAAA
gi|5095 : aTTAA-T----ATTCTCGTTATT-GACGCCTGTGAATTATCACTTTTGTG-----------GATAGCTTCGAAA
gi|5096 : aTTCA-T----TCACTCGTTTTT-GACGCATGTGAATTTTCACTTGTGGG-----------GGTAGGTTCGAAA
gi|5097 : TTCA-C----ACACTCGTTAGT-GATGCCTGTGAACTTGCACTTTTCGG-----------GGTAGCTT-GAAA
gi|5098 : TTCAAT----A-ACACGTT-TT-AACGTCTGTGAATTTT-ACTTTTTGG-----------GGTAGCTTCGAAA
gi|5099 : TTCA-T----ACACTCGTTAAT-GACGTCTGTGAATTTTCACTCT
gi|5100 : CA-T----ACACTCGTTATT-GATGCCGGTGAATTTCCACTTTTGGT-----------TGTAGCTTAAAAA
gi|5101 : CA-T----GCACTTGGTATT-GATGTTTGTGAATTTTCACTTTTTGG-----------AA-AGGTTTGAAA
gi|5102 : CA-T----GCACTCGTTATT-GACGCCTATGCATTTTCAATTTT
gi|5103 : A-T----ACACTTGTTATT-GATGCCTATGAATTTTCGCTTGTGGGGTGGGGTGTGTGGTAGCTTCAAAA
gi|5104 : A-T----ACATTCGTTACT-GACGCCTGTAAAGTTTCATTTTTGGA-----------GGAAACTTCAAAA
gi|5105 : ----ACACTCGTTATT-GACGCCTATGAATTTTCACTTTTGG
gi|5106 : CGCCTATGAGTTTTTACTTTTAGG-----------GGTAGCTTAGAAA
blockSeqs : A TGTA T GTGGGGTGTGT
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqCons :
originalCons : GGTTCA-T----ACACTCGTTATT-GACGCCTGTGAATTTTCACTTTTGGG-----------GGTAGCTTCGAAA
finalCons : GGTTCA-T----ACACTCGTTATT-GACGCCTGTGAATTTTCACTTTTGGG-----------GGTAGCTTCGAAA
Alignments
lowQualScore : 1 2222 1 77777777777
lowQualScore : . .... . ...........
lowQualScore : 4 8888 3 00000000000
consensus : GGTTCA-T----ACACTCGTTATT-GACGCCTGTGAATTTTCACTTTTGGG-----------GGTAGCTTCGAAA
Reference ( family-644 ) : GGTTCA-T----ACACTCGTTATT-GACGCCTGTGAATTTTCACTTTTGGG-----------GGTAGCTTCGAAA
gi|5076 : GGTTTA-T----ACACCCGTTATT-GACGCCTGTGAATTTTTGCTTTTGGG-----------GGTAGCTTCGAAA
gi|5077 : GGTTCA-T----GCACTCGTTATT-GACGCCTGTAATTTTTAACTTTTGGG-----------GGTAGCTTCGAAA
gi|5078 : GGTTCA-T----ACACTTGTTATT-GACACCTGTGAATGTTCACTTTTGGG-----------AGTAACTTCGAAA
gi|5079 : CA-T----ACACTCGTTAGT-GATGCCTGTGAATTTTCATTTTTGGG-----------GATAGCTTCGAGA
gi|5080 : gataGGTTCA-T----ACAATTATTATT-GACATCTGTGAATTTTCACTTTCGGG-----------GGTAGCTTCGAAA
gi|5081 : GGTTTA-T----ACACTCATTATT-GATGCCTGTGATTTTTCACTTTTGGG-----------GTAAGCGTCTAAA
gi|5082 : GGTTCA-T----ACACTCGTTATT-GACGCCCGTGAGATTTCATTTTTGGG-----------GGTAGTTTCAAAA
gi|5083 : GGTTCA-T----ACATTCGTTATT-GACGCCTGTGGATTTTCACGTTTGTT-----------GGTAGCTTCGAAA
gi|5084 : GGTCCA-T----ACACTTGTTATT-GACGCCTGTGAAATTTCAATTTTGAG-----------GGTAGTTTCGAAA
gi|5085 : GGTTCA-T----ACATTCGTGATG-GACGCCTGTGAATTTTCA-TTTTAGG-----------GGGAGCTTCGAAA
gi|5086 : CA-T----ACACTCGTTATT-GACGCCTGTGAATTTTCACTTTTTAG-----------TGTAGAATCGAAA
gi|5087 : gataCA-T----ACACTCGTTATT-GACGCCTGTGCATTTTCACTTTGTAG-----------GGTAGCTGCGGAA
gi|5088 : gataGGTTCA-T----ACACTTATTATG-AATGCCTGTGAATTTTCACTTTAGGA-----------GGTAGCTTCAAAA
gi|5089 : GGTTCA-T----ACAGTCGTTATT-GAAGCCTGTGAATTTACAC-TTTGGG-----------GGTAGCTGCGGAA
gi|5090 : CA-T----GCACTCGTAAAT-GGCGCCTGTGATTTTTCACTTTTGGG-----------GG-AACTTCGAAA
gi|5091 : gataGGTTTG-T----ACAATCATTATT-GACGCCTGTGAATTTTCACTTTTGTA-----------TGTAGCT
gi|5092 : CA-T----GCACTCGTTATT-GACCTCTGTGAATTTTCTGTTTTGGA-----------GGTAGTTTCAAA
gi|5093 : gataGGTTCA-TTGTAACACTCGTTATTTGACGCCTGTGAATTTCCATTCTTG
gi|5094 : TTCC-T----GCACTCGTTATT-GATGCCTGTGAATTTTCACTTTTGGA-----------GAAAGCTTCAAAA
gi|5095 : aTTAA-T----ATTCTCGTTATT-GACGCCTGTGAATTATCACTTTTGTG-----------GATAGCTTCGAAA
gi|5096 : aTTCA-T----TCACTCGTTTTT-GACGCATGTGAATTTTCACTTGTGGG-----------GGTAGGTTCGAAA
gi|5097 : TTCA-C----ACACTCGTTAGT-GATGCCTGTGAACTTGCACTTTTCGG-----------GGTAGCTT-GAAA
gi|5098 : TTCAAT----A-ACACGTT-TT-AACGTCTGTGAATTTT-ACTTTTTGG-----------GGTAGCTTCGAAA
gi|5099 : TTCA-T----ACACTCGTTAAT-GACGTCTGTGAATTTTCACTCT
gi|5100 : CA-T----ACACTCGTTATT-GATGCCGGTGAATTTCCACTTTTGGT-----------TGTAGCTTAAAAA
gi|5101 : CA-T----GCACTTGGTATT-GATGTTTGTGAATTTTCACTTTTTGG-----------AA-AGGTTTGAAA
gi|5102 : CA-T----GCACTCGTTATT-GACGCCTATGCATTTTCAATTTT
gi|5103 : A-T----ACACTTGTTATT-GATGCCTATGAATTTTCGCTTGTGGGGTGGGGTGTGTGGTAGCTTCAAAA
gi|5104 : A-T----ACATTCGTTACT-GACGCCTGTAAAGTTTCATTTTTGGA-----------GGAAACTTCAAAA
gi|5105 : ----ACACTCGTTATT-GACGCCTATGAATTTTCACTTTTGG
gi|5106 : CGCCTATGAGTTTTTACTTTTAGG-----------GGTAGCTTAGAAA