lowQualScore : 11 222222 1111111111111111
lowQualScore : 1 1 0 2222 1 1 666666666666 222 33333 44 11 66 2 6 000000 7777 3 3 222 1 3333 22 1 6666666666666666 22 777777 888888 1 2 0 6 7
lowQualScore : . . . .... . . ............ ... ..... .. .. .. . . ...... .... . . ... . .... .. . ................ .. ...... ...... . . . . .
lowQualScore : 4 4 9 8888 3 3 555555555555 888 33333 66 99 44 9 1 666666 6666 0 4 666 5 1111 11 5 9999999999999999 22 444444 888888 8 0 5 0 5
consensus : TGCGTATTT-CAC-TCAAATAAATTCGTGGAAAACGCAAA----CAATTTTG-T-TTTTA-----------AGC--GTA-----CCCGT--TAC-GC-AAATAATTTT-C-C--TT----C-ACGCA---AAAC-A----TTGTTA--AT-ACA-----ATGCGTA---TCCAAACA--GCTG------TTTCACATTT--C---CTG-TATT-TCGGTAAACAGGAA
Reference ( gi|119959 ) : TGCGTATTT-CAC-TCAAATAAATTCATGGAAAACGCAAA----CAATTTTG-T-TTTTA-----------AGC--ATA-----CCCAT--TAA-GC-AAATAGTTTT-T-C--TT----C-ACGCA---AAAC-A----TTGTTA--AT-ACA-----ATGCGTA---TCCAAACA--GCTG------TTTCACATTT--T---CTG-TATT-TCGATAAATAAGAA
gi|119958 : TGCATATTT-CAC-TCAAATAAATTCATGGAAAACGCAAA-------TTTTG-T-TTTT------------AGT--GTA-----CCTGT--TAC-GC-AAATAATTTT-C-CT-TT----C-GTGTA---CAAC-A----TTGTTA--AT-ACA-----ATGCATA---TCCAAACA--GCTG------TTTCACATTT--C---CTG-TATT-TCGATAAACAGGAA
gi|119960 : TGCATATTT-CAC-TCAAATAAATTCATGGAAAATGCAAA----CAATTTTG-T-TATTA-----------AGC--GTA-----CCAAT--TAC-GC-AAATAATTTT-C-CT-TT----C-ACGCA---AAAT-A----GTGTTT--AT-ACA-----ATGGGTA---TCTAAACA--GCTG------TTTCGCATTT--C---CTG-TATT-TTGATA
gi|119962 : TGCGTATTT-CAC-TAAAATAAATTTGTTTAAAATGCGAA----CAATTTTG-T-TTTAT-----------AGC--ATA-----CCGGT--TAT-GC-AAATAATTTT-C-CT-TT----C-ACGCA---AAAC-A----TTGTTA--AT-ACATGTACATGTGAA---TCCAAACA--GCTA------TTTCACATTT--C---CTG-TATT-TCAGTAAACA
gi|119961 : TGCGTATTT-CCC-TCGAACAAATTTATGGAAA-CGCAAA----CAATTCTG-T-TTTTA-----------AGC--G-------CCTGT--TAC-GC-AAATAATTGT-C-C--TTT---C-ATGTA---AAAC-A----TTGTTA--AT-CCA-----ATGTGTA---TCCTAACA--GTTG------TGTCACATTT--C---CTG-TATT-TCAATAAACAGg
gi|119965 : TGCATATTT-CAC-TCAAATAAATTCACGGAAAACGCAAA----CAATTTTATT-TTTTA-----------ATC--ATA-----CCTGT--TAC-GC-AAATAATTTT-CAT--TT----C-ACACA---AAAC-A----TTGTTACCGTAACA-----ATGCATA---TCCAAACA--GCTG------TTT---ATTT--C---CTG-T
gi|119967 : TGCATATTT-CAC-TCAAATAAATTCCTAGAAAACGCTAA----TAATATTG-T-TTGTA-----------AGC--GCA-----CCCAT--TAC-GC-AAAACAT---------TT----C-ACGCA---AAAC-A----GTGTTA--AT-AC------ATGCGTA---TCCAAACA--GCTG------TTTGGCATTT--C---CTG-TATT-TCAGTAAACA
gi|119969 : TGCGTATTT-CAC-CCAAATAAATTTGTGGTAAACACAAA----CAATTTTG-T-TTTTA-----------AGT--GTA-----TCCGT--TAC-AC-ATATATTTTT-C-T--TT----T-ACGGG---AAAC-A----TTGCTA--AT-AC------ATGGTTA---TCAAAACA--GCTG------TTTCATATTT--C---TTG-TATT-TTGGTAAACACGAAg
gi|119966 : TGCGTATTT-CAC-ACCAATAAATTTGTGGAAAATGCAAA----CAATTTTG-T-TTTTT-----------AGC--GTA-----CCTGT--TAC-AC-AAGTAA-TTT-T-CAATT----C-ACTCA---AAAC-A----TTGTTA--AT-AC------ATGCGTA---TCCAAACA--GCTG------ATTCATA-TT--T---CT--TATTATTGGTAAACAG
gi|119968 : TGCACATTT-GAC-TAAAATAAATTCATGGAAAATGTAAA----CAATTTTG-TATTTTA-----------ATC--ATA-----TCCGT--TAT-GC-AAATAATTTT-C-C--TTT---C-ACACA---AAAC-A----TTGTAA--AT-AAA-----ATGAGTA---TCCAAACA--GCTG------TTTAACAATT--C---CTG-CA
gi|119963 : TGTGTATTT-CAC-TCAAATAAATTCATGGAAAATGCAAA----CAATTTTG-T-TTTAA-----------AGT--GTA-----CCTGT--TAC-AC-AAATAATGTT-C-CT-TT----C-ACAC----AAAC-A----TTGTTA--AT-A-------------------CAAACA--GCTG------TTTCATATTTACTGTACTG-TATT-TTAATAAACATGAAggaaacag
gi|119964 : TGCGCATCA-CAC-TCAAATAATGTCATAGAAAATGCAAA----CAATTTT-----TTTA-----------ACC--GTA-----CCAGT--TAC-GC-AAATAATTTT-C-C--TT----T--CACA---AAAC-A----ATGTTA--AT-ACA-----ATGCATG---TCAAAACA--GCTG------TTATACATTT--C---CTG-TATT-TCAGTAA
gi|119970 : TGCGTATTT-CAC-TCAAATAAATTCATGGAAAACACAAA----CAATTTTG-T-TTTTA-----------AGT--GCA-----CCCGT--TAC-TCAAAATA-TTTG-C-C--TT----TAACACA---TAAC-A----TTGTTT--AT-ACA-----ATGCGTA---TTCAAACATTACTGTAT---TTTCACccag
gi|119973 : TGTGTATTT-CAC-TCAAATAAATTCATGGAAAACGCGAA----ATATTTT--T-TTTTATTATTATTATTATT--GTA-----TCCGTAATAC-GC-AAATAATTTC-C-T--TT----C-ACGCA---AAAC-A----TTGTTA--AT---A-----ATGAGTA---TCAAAACA--TCTG------TTTAACATTT--T---CTGTTAGT-CAGATAAAttaacaggaa
gi|119972 : TACGTATTT-CAC-TCAAATAAATTCATGAAAAACGCAAA----CAATTTTA-T-TT---------------GC--A-------------------C-AAATAATTTT-C-CT-TT----C-GCGC----AAAC-A----TTGTAA--AT-A-------------------CAAACA--GCTG------TTCAACATTT--C---CTG-TATT-TTAATATACAGGAAccgg
gi|119975 : TGAGTATTT-TAC-TCA--TAAATTCATGGAAAACGCAAA----CAATTTTG-A-TTTT------------GGC--GTC-----CCTGT--TAG-GC-AATTAATTTTCT-G--TT----C-ACTCA---AACCAA----TTATAA--AT-AT------ATATGTA---TCAAAACA--GCTG------TTTCA
gi|119971 : TGCATATTT-CAC-TCAAACAAATTCGCGGAAAAAGTAAA----CAG--TTG-T-TTTCA-----------ATA--GTA-----CCCAT--TA
gi|119974 : TGCATATTT-CAT-TAAAATAAATTCAAGGAAAATGCA----------TTTG-T-TTTTA-----------AGT--GTA-----ACCAT--TAC-ACAAAAAAGATTC-C-G--TT----C-ACACA---AAAT-A----TTG--------------------------TCCAAACA--GCTATTTTTTTTTTACATTT--C---CTG-TATT-TCGATAAACAGGAAcacgcctggcaattttgttttcaagtgtacccgttacacgaataatttttcctttcattcaaaacaattattgttgatacatgcgtatccaaatagctgatttatatttcctgtatttctgtaaacaggaa
gi|119976 : TGTGTATTT-CAC-TCAAATAAATTCATGGAAAATACTAA----CAAATTTC-T-TTTTA-----------AGG--GTA-----CCCGT--TCC-CC-AAATAATTTT-C-CT-TT----C-ACTCA----------------TTA--AT-AC------ATGCATT---TTCAAA--------------TTTCATAGTT--T---C
gi|119977 : TGCATATTT-CAC-TCAAATAAATTCAT-GAAAACACAAA----C-ATTTT--T-TTTT------------AGC--GTT-----ACCAC--TGT-AC-AAATAATTTT-C-CT-TT----C-ATGCA---AAAC-A----TT-------T-ATA---------------------------TG------TTTCACATTT--C---CTC-TATT-TATGTAAACAGcagttatt
gi|119980 : TGGGTATTT-CAC-TCAAATAAATTTGTGGAAAAC-C-------CAATTTTG-T-TTTTA-----------AGC--GTA-----C
gi|119978 : TGCGTATTT-CAC-TCATATAAATTCGTAGAAAA-AAAAA----CAAATTTG-T-TTTTT-----------AGT--ATA-----CCTGT--TAT-GC-A
gi|119979 : TGTGTATTT-CAC-CAAAATAAAATCATGGTAACTGCAAA----TAATTTTA-T-TTTTA-----------AAC--ATA-----CTAGT--TGC-AC-AAATAATTGT-C-T--TG----C-ACTCATTTTAAC-G----TTTTAA--AT-ATA-----
gi|119981 : GCGTATTT-CAA-TTAAATAAATTCTTGGAAAATGTTAA----TAATTTTG-T-TTGTA-----------AAC--AT----------T--TAAGGC-TAATAATTTT-C-C--TT----T-G------------A----CTG--A--AT-ACA-----TTGT-----------ACA--GCAG------TTTTATATTT--C---CTG-TA-T-TCAGTATACAGGAA
gi|119982 : CATATTT-CGC-TCAAACAAAATCGTGGAAAATGCAAA----AAAATTTG-T-TT
gi|119983 : GTATTT-CAC-TCAAATAAAGTCATAGAAAATGCAAA----AAATTTTG-T-TTT-A-----------AGC--GTA-----CCTGT--TAT-GC-AAATAGTTTT-C-C--TT----TTACGCA---AAAC-A----TTGTTA--GT-ACA------TGCATA---ACCAAACA--GCTG------TTTTACATTT--C---CTG-TATT-TTGATAAACAacgtatgatttacacaatgattt
gi|119984 : TATTT-T---CCAAATAACTTCATGCAAAATGCAAACATGCAA---TG-T-TTTTA-----------AGCAAATAATTTTCCTTT--CAATGC-AAATAATTGT-C-CT-TT----C-ACTCA---AAGC-A----TTGTTg
gi|119985 : ATTTGCACATTGAATATCTACATG-AAAATGCAAG----CAAATTTG-T-TTTTA-----------AGC--GTA-----CCCAT--TAC-AC-ATATAATTTTCT-G--TT----C-ACTCA---TAAC-A----TTGTAA--A----------------------CAAACA----TG-------TTCATATTT--C---CTG-TATT-TCAGTAAACAtgagtaaacaggaaacatccagataaaccggttccaggttatcacagttcgtacttcataagc
gi|119986 : TT-CAC-TTAAATAACTTCATGCAAAATGCAAA----CAAATGTG-T-TTTTA-----------AGC--ATA-----CCTGT--TAT-GC-AATTATTTTC-C-T--TT----C-ACTCA---AAGC-A----TTGTTA--AT-AC------ATGAATA---CCCAAACA--GCTG------TTTCATATTT--C---CTG-TATT-TGAGTAAACAGGAAg
gi|119987 : TATATTTGTGGAAAGCGCAAA----CAATTTCA-T-TTTTA-----------AGC--ATA-----CCTAT--TAT-AC-ATGTAGTTTT-C-C--TTC---C-ACTCA---AAAC-A----TAATTA--AT-AC------ATTCATATCTTCCCAACA--GCTG------TTTCATATTT--C---CTT-TGTT-TTGGTAAACAGGAA
gi|119971 : ----CAATTTTG-T-TTTCA-----------AGT--GTA-----CCCGT--TAC-AC-GAATAATTTT-T-CCTTT----C-ATTCA---AAAC-AATTATTGTTG--AT-ACA------TGCGTA---TCCAAATA--GCTG------ATTTATATTT--C---CTG-TATT-TCTGTAAACAGGAA
gi|119988 : tgcatatttcactcaaacaaattcgcggaaaaagtaaacagttgttttcaatagtacccattacacgcctggTTGTG-T-TTTTT-----------TGT--GTA-----CCCGA--TAT-GC-AAATAATTTT-T-C--TTTTGAC-ACACA---AAAT-G----TT--TA--AT-ACA-----A--------------ACA--GCT-------TTTCACATTT--C---CTG-TATT-TCAATAAACAGGAA
Alignments
lowQualScore : 11 1111111111111111
lowQualScore : 2 0 2222 1 1 666666666666 11 2222 0 11 33 2 77 8888 1 2 222 1 3333 22 1 2222222222222222 444444 1 1 3333 3 1 1
lowQualScore : . . .... . . ............ .. .... . .. .. . .. .... . . ... . .... .. . ................ ...... . . .... . . .
lowQualScore : 2 5 7777 2 2 333333333333 77 7777 8 88 11 9 77 8888 4 9 555 4 0000 00 5 4444444444444444 444444 6 6 4444 2 7 7
consensus : TGCGTATTTCACTCAAATAAATTCGTGGAAAACGCAAACAATTT----TG-T-TTTTA-----------AGC--GTA----CCCGT--T--ACGCAAATAATTTTC-C--TT----C-ACGCA---AAAC-A----TTGTTA--AT-ACA-----ATGCGTA---TCCAAACAGCTG------TTTCACA-TTT-C----CTG-TA-TT-TCGGTAAACAGGAA
Reference ( family-643 ) : TGCGTATTTCACTCAAATAAATTCGTGGAAAACGCAAACAATTT----TG-T-TTTTA-----------AGC--GTA----CCCGT--T--ACGCAAATAATTTTC-C--TT----C-ACGCA---AAAC-A----TTGTTA--AT-ACA-----ATGCGTA---TCCAAACAGCTG------TTTCACA-TTT-C----CTG-TA-TT-TCGGTAAACAGGAA
gi|119958 : TGCATATTTCACTCAAATAAATTCATGGAAAACGCAAA---TTT----TG-T-TTTT------------AGT--GTA----CCTGT--T--ACGCAAATAATTTTC-CT-TT----C-GTGTA---CAAC-A----TTGTTA--AT-ACA-----ATGCATA---TCCAAACAGCTG------TTTCACA-TTT-C----CTG-TA-TT-TCGATAAACAGGAA
gi|119959 : TGCGTATTTCACTCAAATAAATTCATGGAAAACGCAAACAATTT----TG-T-TTTTA-----------AGC--ATA----CCCAT--T--AAGCAAATAGTTTTT-C--TT----C-ACGCA---AAAC-A----TTGTTA--AT-ACA-----ATGCGTA---TCCAAACAGCTG------TTTCACA-TTT-T----CTG-TA-TT-TCGATAAATAAGAA
gi|119960 : TGCATATTTCACTCAAATAAATTCATGGAAAATGCAAACAATTT----TG-T-TATTA-----------AGC--GTA----CCAAT--T--ACGCAAATAATTTTC-CT-TT----C-ACGCA---AAAT-A----GTGTTT--AT-ACA-----ATGGGTA---TCTAAACAGCTG------TTTCGCA-TTT-C----CTG-TA-TT-TTGATA
gi|119961 : TGCGTATTTCCCTCGAACAAATTTATGGAAA-CGCAAACAATTC----TG-T-TTTTA-----------AGC--G------CCTGT--T--ACGCAAATAATTGTC-C--TTT---C-ATGTA---AAAC-A----TTGTTA--AT-CCA-----ATGTGTA---TCCTAACAGTTG------TGTCACA-TTT-C----CTG-TA-TT-TCAATAAACAGG
gi|119962 : TGCGTATTTCACTAAAATAAATTTGTTTAAAATGCGAACAATTT----TG-T-TTTAT-----------AGC--ATA----CCGGT--T--ATGCAAATAATTTTC-CT-TT----C-ACGCA---AAAC-A----TTGTTA--AT-ACATGTACATGTGAA---TCCAAACAGCTA------TTTCACA-TTT-C----CTG-TA-TT-TCAGTAAACAG
gi|119963 : TGTGTATTTCACTCAAATAAATTCATGGAAAATGCAAACAATTT----TG-T-TTTAA-----------AGT--GTA----CCTGT--T--ACACAAATAATGTTC-CT-TT----C-ACAC----AAAC-A----TTGTTA--AT-A-------------------CAAACAGCTG------TTTCATA-TTTACTGTACTG-TA-TT-TTAATAAACATGAA
gi|119964 : TGCGCATCACACTCAAATAATGTCATAGAAAATGCAAACAATTT----T-----TTTA-----------ACC--GTA----CCAGT--T--ACGCAAATAATTTTC-C--TT----T--CACA---AAAC-A----ATGTTA--AT-ACA-----ATGCATG---TCAAAACAGCTG------TTATACA-TTT-C----CTG-TA-TT-TCAGTAACCAG
gi|119965 : TGCATATTTCACTCAAATAAATTCACGGAAAACGCAAACAATTT----TATT-TTTTA-----------ATC--ATA----CCTGT--T--ACGCAAATAATTTTCAT--TT----C-ACACA---AAAC-A----TTGTTACCGTAACA-----ATGCATA---TCCAAACAGCTG------TTT---A-TTT-C----CTG-T
gi|119966 : TGCGTATTTCACACCAATAAATTTGTGGAAAATGCAAACAATTT----TG-T-TTTTT-----------AGC--GTA----CCTGT--T--ACACAAGTAATTTTCAA--TT----C-ACTCA---AAAC-A----TTGTTA--AT-AC------ATGCGTA---TCCAAACAGCTG------ATTCATA-TTT-C----T---TA-TTATTGGTAAACAGG
gi|119967 : TGCATATTTCACTCAAATAAATTCCTAGAAAACGCTAATAATAT----TG-T-TTGTA-----------AGC--GCA----CCCAT--T--ACGCAAAACAT--------TT----C-ACGCA---AAAC-A----GTGTTA--AT-AC------ATGCGTA---TCCAAACAGCTG------TTTGGCA-TTT-C----CTG-TA-TT-TCAGTAAACAG
gi|119968 : TGCACATTTGACTAAAATAAATTCATGGAAAATGTAAACAATTT----TG-TATTTTA-----------ATC--ATA----TCCGT--T--ATGCAAATAATTTTC-C--TTT---C-ACACA---AAAC-A----TTGTAA--AT-AAA-----ATGAGTA---TCCAAACAGCTG------TTTAACA-ATT-C----CTG-CA------GG-AAACAG
gi|119969 : TGCGTATTTCACCCAAATAAATTTGTGGTAAACACAAACAATTT----TG-T-TTTTA-----------AGT--GTA----TCCGT--T--ACACATATATTTTTC-T--TT----T-ACGGG---AAAC-A----TTGCTA--AT-AC------ATGGTTA---TCAAAACAGCTG------TTTCATA-TTT-C----TTG-TA-TT-TTGGTAAACACGAA
gi|119970 : TGCGTATTTCACTCAAATAAATTCATGGAAAACACAAACAATTT----TG-T-TTTTA-----------AGT--GCA----CCCGT--T--ACTCAAAATATTTGC-C--TT----TAACACA---TAAC-A----TTGTTT--AT-ACA-----ATGCGTA---TTCAAACA-------------------TT-A----CTG-TATTT-TCACTTAACAGGAA
gi|119971 : TGCATATTTCACTCAAACAAATTCGCGGAAAAAGTAAACAG--T----TG-T-TTTCA-----------ATA--GTA----CCCAT--T--ACAC
gi|119971 : CAATTT----TG-T-TTTCA-----------AGT--GTA----CCCGT--T--ACACGAATAATTTTT-CCTTT----C-ATTCA---AAAC-AATTATTGTTG--AT-ACA------TGCGTA---TCCAAATAGCTG------ATTTATA-TTT-C----CTG-TA-TT-TCTGTAAACAGGAAgcctggcaattttgttttcaagtgtacccgttacacgaataatttttcctttcattcaaaacaattattgttgatacatgcgtatccaaatagctgatttatatttcctgtatttctgtaaacaggaa
gi|119972 : tgcatatttcactcaaacaaattcgcggaaaaagtaaacagttgttttcaatagtacccattacacgcctggTACGTATTTCACTCAAATAAATTCATGAAAAACGCAAACAATTT----TA-T-TT------------------------------------GCACAAATAATTTTC-C--TTT---C-GCGCA---AA-C-A----TTGTAA--AT-ACA-----A--------------ACAGCTG------TTCAACA-TTT-C----CTG-TA-TT-TTAATATACAGGAA
gi|119973 : TGTGTATTTCACTCAAATAAATTCATGGAAAACGCGAAATATTT----T--T-TTTTATTATTATTATTATT--GTA----TCCGTAAT--ACGCAAATAATTTCC-T--TT----C-ACGCA---AAAC-A----TTGTTA--AT---A-----ATGAGTA---TCAAAACATCTG------TTTAACA-TTT-T----CTGTTA-GT-CAGATAAACCGG
gi|119974 : TGCATATTTCATTAAAATAAATTCAAGGAAAATGCA------TT----TG-T-TTTTA-----------AGT--GTA----ACCAT--T--ACACAAAAAAGATTC-CG-TT----C-ACACA---AAAT-A----TTG--------------------------TCCAAACAGCTATTTTTTTTTTACA-TTT-C----CTG-TA-TT-TCGATAAACAGGAA
gi|119975 : TGAGTATTTTACTCA--TAAATTCATGGAAAACGCAAACAATTT----TG-A-TTTT------------GGC--GTC----CCTGT--T--AGGCAATTAATTTTC-TG-TT----C-ACTCA---AACCAA----TTATAA--AT-AT------ATATGTA---TCAAAACAGCTG------TTTCA
gi|119976 : TGTGTATTTCACTCAAATAAATTCATGGAAAATACTAACAAATT----TC-T-TTTTA-----------AGG--GTA----CCCGT--T--CCCCAAATAATTTTC-CT-TT----C-ACTCA----------------TTA--AT-AC------ATGCATT---TTCAAA------------TTTCATAGTTT-C----CAGTTA-TT-
gi|119977 : TGCATATTTCACTCAAATAAATTCAT-GAAAACACAAAC-ATTT----T--T-TTTT------------AGC--GTT----ACCAC--T--GTACAAATAATTTTC-CT-TT----C-ATGCA---AAAC-A----TT-------T-ATA-------------------------TG------TTTCACA-TTT-C----CTC-TA-TT-TATGTAAACAGG
gi|119978 : TGCGTATTTCACTCATATAAATTCGTAGAAAA-AAAAACAAATT----TG-T-TTTTT-----------AGT--ATA----CCTGT--T--ATGCA
gi|119979 : TGTGTATTTCACCAAAATAAAATCATGGTAACTGCAAATAATTT----TA-T-TTTTA-----------AAC--ATA----CTAGT--T--GCACAAATAATTGTC-T--TG----C-ACTCATTTTAAC-G----TTTTAA--AT-ATA-----
gi|119980 : TGGGTATTTCACTCAAATAAATTTGTGGAAAAC-C---CAATTT----TG-T-TTTTA-----------AGC--GTA----C
gi|119981 : GCGTATTTCAATTAAATAAATTCTTGGAAAATGTTAATAATTT----TG-T-TTGTA-----------AAC--AT---------T--TA-AGGCTAATAATTTTC-C--TT----T-G------------A----CTG--A--AT-ACA-----TTGT-----------ACAGCAG------TTTTATA-TTT-C----CTG-TA--T-TCAGTATACAGGAA
gi|119982 : CATATTTCGCTCAAACAAAATCGTGGAAAATGCAAAAAAATT----TG-T-TT---------------AC--GTA----TGATT--T--ACAC-AATGATTT
gi|119983 : GTATTTCACTCAAATAAAGTCATAGAAAATGCAAAAAATTT----TG-T-TTT-A-----------AGC--GTA----CCTGT--T--ATGCAAATAGTTTTC-CT-TT----T-ACGCA---AAAC-A----TTGTTA--GT-AC------ATGCATA---ACCAAACAGCTG------TTTTACA-TTT-C----CTG-TA-TT-TTGATAAACAG
gi|119984 : TATTTT--CCAAATAACTTCATGCAAAATGCAAACA---TGCAATG-T-TTTTA-----------AGCAAATAATTTTCCTT--TCAATGCAAATAATTGTC-CT-TT----C-ACTCA---AAGC-A----TTGTT
gi|119985 : GAAAATGCAAGCAAATT----TG-T-TTTTA-----------AGC--GTA----CCCAT--T--ACACATATAATTTTC-TG-TT----C-ACTCA---TAAC-A----TTGTAA--A----------------------CAAACA--TG-------TTCATA-TTT-C----CTG-TA-TT-TCAGTAAACAGtgagtaaacaggaaacatccagataaaccggttccaggttatcacagttcgtacttcataagc
gi|119986 : atttgcacattgaatatctacatTTCACTTAAATAACTTCATGCAAAATGCAAACAAATG----TG-T-TTTTA-----------AGC--ATA----CCTGT--T--ATGCAATTATTTTCC-T--TT----C-ACTCA---AAGC-A----TTGTTA--AT-AC------ATGAATA---CCCAAACAGCTG------TTTCATA-TTT-C----CTG-TA-TT-TGAGTAAACAGGAA
gi|119987 : TATATTTGTGGAAAGCGCAAACAATTT----CA-T-TTTTA-----------AGC--ATA----CCTAT--T--ATACATGTAGTTTTC-C--TTC---C-ACTCA---AAAC-A----TAATTA--AT-AC------ATTCATATCTTCCCAACAGCTG------TTTCATA-TTT-C----CTT-TG-TT-TTGGTAAACAGGAA
gi|119988 : TTG----TG-T-TTTTT-----------TGT--GTA----CCCGA--T--ATGCAAATAATTTTT-C--TTTTGAC-ACACA---AAAT-G----TT--TA--AT-ACA-----A--------------ACAGCT-------TTTCACA-TTT-C----CTG-TA-TT-TCAATAAACAGGAA
Alignments
lowQualScore : 11 1111111111111111
lowQualScore : 2 0 2222 1 1 666666666666 11 2222 0 11 33 2 77 8888 1 2 222 1 3333 22 1 2222222222222222 444444 1 1 3333 3 1 1
lowQualScore : . . .... . . ............ .. .... . .. .. . .. .... . . ... . .... .. . ................ ...... . . .... . . .
lowQualScore : 2 5 7777 2 2 333333333333 77 7777 8 88 11 9 77 8888 4 9 555 4 0000 00 5 4444444444444444 444444 6 6 4444 2 7 7
consensus : TGCGTATTTCACTCAAATAAATTCGTGGAAAACGCAAACAATTT----TG-T-TTTTA-----------AGC--GTA----CCCGT--T--ACGCAAATAATTTTC-C--TT----C-ACGCA---AAAC-A----TTGTTA--AT-ACA-----ATGCGTA---TCCAAACAGCTG------TTTCACA-TTT-C----CTG-TA-TT-TCGGTAAACAGGAA
Reference ( family-643 ) : TGCGTATTTCACTCAAATAAATTCGTGGAAAACGCAAACAATTT----TG-T-TTTTA-----------AGC--GTA----CCCGT--T--ACGCAAATAATTTTC-C--TT----C-ACGCA---AAAC-A----TTGTTA--AT-ACA-----ATGCGTA---TCCAAACAGCTG------TTTCACA-TTT-C----CTG-TA-TT-TCGGTAAACAGGAA
gi|119958 : TGCATATTTCACTCAAATAAATTCATGGAAAACGCAAA---TTT----TG-T-TTTT------------AGT--GTA----CCTGT--T--ACGCAAATAATTTTC-CT-TT----C-GTGTA---CAAC-A----TTGTTA--AT-ACA-----ATGCATA---TCCAAACAGCTG------TTTCACA-TTT-C----CTG-TA-TT-TCGATAAACAGGAA
gi|119959 : TGCGTATTTCACTCAAATAAATTCATGGAAAACGCAAACAATTT----TG-T-TTTTA-----------AGC--ATA----CCCAT--T--AAGCAAATAGTTTTT-C--TT----C-ACGCA---AAAC-A----TTGTTA--AT-ACA-----ATGCGTA---TCCAAACAGCTG------TTTCACA-TTT-T----CTG-TA-TT-TCGATAAATAAGAA
gi|119960 : TGCATATTTCACTCAAATAAATTCATGGAAAATGCAAACAATTT----TG-T-TATTA-----------AGC--GTA----CCAAT--T--ACGCAAATAATTTTC-CT-TT----C-ACGCA---AAAT-A----GTGTTT--AT-ACA-----ATGGGTA---TCTAAACAGCTG------TTTCGCA-TTT-C----CTG-TA-TT-TTGATA
gi|119961 : TGCGTATTTCCCTCGAACAAATTTATGGAAA-CGCAAACAATTC----TG-T-TTTTA-----------AGC--G------CCTGT--T--ACGCAAATAATTGTC-C--TTT---C-ATGTA---AAAC-A----TTGTTA--AT-CCA-----ATGTGTA---TCCTAACAGTTG------TGTCACA-TTT-C----CTG-TA-TT-TCAATAAACAGG
gi|119962 : TGCGTATTTCACTAAAATAAATTTGTTTAAAATGCGAACAATTT----TG-T-TTTAT-----------AGC--ATA----CCGGT--T--ATGCAAATAATTTTC-CT-TT----C-ACGCA---AAAC-A----TTGTTA--AT-ACATGTACATGTGAA---TCCAAACAGCTA------TTTCACA-TTT-C----CTG-TA-TT-TCAGTAAACAG
gi|119963 : TGTGTATTTCACTCAAATAAATTCATGGAAAATGCAAACAATTT----TG-T-TTTAA-----------AGT--GTA----CCTGT--T--ACACAAATAATGTTC-CT-TT----C-ACAC----AAAC-A----TTGTTA--AT-A-------------------CAAACAGCTG------TTTCATA-TTTACTGTACTG-TA-TT-TTAATAAACATGAA
gi|119964 : TGCGCATCACACTCAAATAATGTCATAGAAAATGCAAACAATTT----T-----TTTA-----------ACC--GTA----CCAGT--T--ACGCAAATAATTTTC-C--TT----T--CACA---AAAC-A----ATGTTA--AT-ACA-----ATGCATG---TCAAAACAGCTG------TTATACA-TTT-C----CTG-TA-TT-TCAGTAACCAG
gi|119965 : TGCATATTTCACTCAAATAAATTCACGGAAAACGCAAACAATTT----TATT-TTTTA-----------ATC--ATA----CCTGT--T--ACGCAAATAATTTTCAT--TT----C-ACACA---AAAC-A----TTGTTACCGTAACA-----ATGCATA---TCCAAACAGCTG------TTT---A-TTT-C----CTG-T
gi|119966 : TGCGTATTTCACACCAATAAATTTGTGGAAAATGCAAACAATTT----TG-T-TTTTT-----------AGC--GTA----CCTGT--T--ACACAAGTAATTTTCAA--TT----C-ACTCA---AAAC-A----TTGTTA--AT-AC------ATGCGTA---TCCAAACAGCTG------ATTCATA-TTT-C----T---TA-TTATTGGTAAACAGG
gi|119967 : TGCATATTTCACTCAAATAAATTCCTAGAAAACGCTAATAATAT----TG-T-TTGTA-----------AGC--GCA----CCCAT--T--ACGCAAAACAT--------TT----C-ACGCA---AAAC-A----GTGTTA--AT-AC------ATGCGTA---TCCAAACAGCTG------TTTGGCA-TTT-C----CTG-TA-TT-TCAGTAAACAG
gi|119968 : TGCACATTTGACTAAAATAAATTCATGGAAAATGTAAACAATTT----TG-TATTTTA-----------ATC--ATA----TCCGT--T--ATGCAAATAATTTTC-C--TTT---C-ACACA---AAAC-A----TTGTAA--AT-AAA-----ATGAGTA---TCCAAACAGCTG------TTTAACA-ATT-C----CTG-CA------GG-AAACAG
gi|119969 : TGCGTATTTCACCCAAATAAATTTGTGGTAAACACAAACAATTT----TG-T-TTTTA-----------AGT--GTA----TCCGT--T--ACACATATATTTTTC-T--TT----T-ACGGG---AAAC-A----TTGCTA--AT-AC------ATGGTTA---TCAAAACAGCTG------TTTCATA-TTT-C----TTG-TA-TT-TTGGTAAACACGAA
gi|119970 : TGCGTATTTCACTCAAATAAATTCATGGAAAACACAAACAATTT----TG-T-TTTTA-----------AGT--GCA----CCCGT--T--ACTCAAAATATTTGC-C--TT----TAACACA---TAAC-A----TTGTTT--AT-ACA-----ATGCGTA---TTCAAACA-------------------TT-A----CTG-TATTT-TCACTTAACAGGAA
gi|119971 : TGCATATTTCACTCAAACAAATTCGCGGAAAAAGTAAACAG--T----TG-T-TTTCA-----------ATA--GTA----CCCAT--T--ACAC
gi|119971 : CAATTT----TG-T-TTTCA-----------AGT--GTA----CCCGT--T--ACACGAATAATTTTT-CCTTT----C-ATTCA---AAAC-AATTATTGTTG--AT-ACA------TGCGTA---TCCAAATAGCTG------ATTTATA-TTT-C----CTG-TA-TT-TCTGTAAACAGGAAgcctggcaattttgttttcaagtgtacccgttacacgaataatttttcctttcattcaaaacaattattgttgatacatgcgtatccaaatagctgatttatatttcctgtatttctgtaaacaggaa
gi|119972 : tgcatatttcactcaaacaaattcgcggaaaaagtaaacagttgttttcaatagtacccattacacgcctggTACGTATTTCACTCAAATAAATTCATGAAAAACGCAAACAATTT----TA-T-TT------------------------------------GCACAAATAATTTTC-C--TTT---C-GCGCA---AA-C-A----TTGTAA--AT-ACA-----A--------------ACAGCTG------TTCAACA-TTT-C----CTG-TA-TT-TTAATATACAGGAA
gi|119973 : TGTGTATTTCACTCAAATAAATTCATGGAAAACGCGAAATATTT----T--T-TTTTATTATTATTATTATT--GTA----TCCGTAAT--ACGCAAATAATTTCC-T--TT----C-ACGCA---AAAC-A----TTGTTA--AT---A-----ATGAGTA---TCAAAACATCTG------TTTAACA-TTT-T----CTGTTA-GT-CAGATAAACCGG
gi|119974 : TGCATATTTCATTAAAATAAATTCAAGGAAAATGCA------TT----TG-T-TTTTA-----------AGT--GTA----ACCAT--T--ACACAAAAAAGATTC-CG-TT----C-ACACA---AAAT-A----TTG--------------------------TCCAAACAGCTATTTTTTTTTTACA-TTT-C----CTG-TA-TT-TCGATAAACAGGAA
gi|119975 : TGAGTATTTTACTCA--TAAATTCATGGAAAACGCAAACAATTT----TG-A-TTTT------------GGC--GTC----CCTGT--T--AGGCAATTAATTTTC-TG-TT----C-ACTCA---AACCAA----TTATAA--AT-AT------ATATGTA---TCAAAACAGCTG------TTTCA
gi|119976 : TGTGTATTTCACTCAAATAAATTCATGGAAAATACTAACAAATT----TC-T-TTTTA-----------AGG--GTA----CCCGT--T--CCCCAAATAATTTTC-CT-TT----C-ACTCA----------------TTA--AT-AC------ATGCATT---TTCAAA------------TTTCATAGTTT-C----CAGTTA-TT-
gi|119977 : TGCATATTTCACTCAAATAAATTCAT-GAAAACACAAAC-ATTT----T--T-TTTT------------AGC--GTT----ACCAC--T--GTACAAATAATTTTC-CT-TT----C-ATGCA---AAAC-A----TT-------T-ATA-------------------------TG------TTTCACA-TTT-C----CTC-TA-TT-TATGTAAACAGG
gi|119978 : TGCGTATTTCACTCATATAAATTCGTAGAAAA-AAAAACAAATT----TG-T-TTTTT-----------AGT--ATA----CCTGT--T--ATGCA
gi|119979 : TGTGTATTTCACCAAAATAAAATCATGGTAACTGCAAATAATTT----TA-T-TTTTA-----------AAC--ATA----CTAGT--T--GCACAAATAATTGTC-T--TG----C-ACTCATTTTAAC-G----TTTTAA--AT-ATA-----
gi|119980 : TGGGTATTTCACTCAAATAAATTTGTGGAAAAC-C---CAATTT----TG-T-TTTTA-----------AGC--GTA----C
gi|119981 : GCGTATTTCAATTAAATAAATTCTTGGAAAATGTTAATAATTT----TG-T-TTGTA-----------AAC--AT---------T--TA-AGGCTAATAATTTTC-C--TT----T-G------------A----CTG--A--AT-ACA-----TTGT-----------ACAGCAG------TTTTATA-TTT-C----CTG-TA--T-TCAGTATACAGGAA
gi|119982 : CATATTTCGCTCAAACAAAATCGTGGAAAATGCAAAAAAATT----TG-T-TT---------------AC--GTA----TGATT--T--ACAC-AATGATTT
gi|119983 : GTATTTCACTCAAATAAAGTCATAGAAAATGCAAAAAATTT----TG-T-TTT-A-----------AGC--GTA----CCTGT--T--ATGCAAATAGTTTTC-CT-TT----T-ACGCA---AAAC-A----TTGTTA--GT-AC------ATGCATA---ACCAAACAGCTG------TTTTACA-TTT-C----CTG-TA-TT-TTGATAAACAG
gi|119984 : TATTTT--CCAAATAACTTCATGCAAAATGCAAACA---TGCAATG-T-TTTTA-----------AGCAAATAATTTTCCTT--TCAATGCAAATAATTGTC-CT-TT----C-ACTCA---AAGC-A----TTGTT
gi|119985 : GAAAATGCAAGCAAATT----TG-T-TTTTA-----------AGC--GTA----CCCAT--T--ACACATATAATTTTC-TG-TT----C-ACTCA---TAAC-A----TTGTAA--A----------------------CAAACA--TG-------TTCATA-TTT-C----CTG-TA-TT-TCAGTAAACAGtgagtaaacaggaaacatccagataaaccggttccaggttatcacagttcgtacttcataagc
gi|119986 : atttgcacattgaatatctacatTTCACTTAAATAACTTCATGCAAAATGCAAACAAATG----TG-T-TTTTA-----------AGC--ATA----CCTGT--T--ATGCAATTATTTTCC-T--TT----C-ACTCA---AAGC-A----TTGTTA--AT-AC------ATGAATA---CCCAAACAGCTG------TTTCATA-TTT-C----CTG-TA-TT-TGAGTAAACAGGAA
gi|119987 : TATATTTGTGGAAAGCGCAAACAATTT----CA-T-TTTTA-----------AGC--ATA----CCTAT--T--ATACATGTAGTTTTC-C--TTC---C-ACTCA---AAAC-A----TAATTA--AT-AC------ATTCATATCTTCCCAACAGCTG------TTTCATA-TTT-C----CTT-TG-TT-TTGGTAAACAGGAA
gi|119988 : TTG----TG-T-TTTTT-----------TGT--GTA----CCCGA--T--ATGCAAATAATTTTT-C--TTTTGAC-ACACA---AAAT-G----TT--TA--AT-ACA-----A--------------ACAGCT-------TTTCACA-TTT-C----CTG-TA-TT-TCAATAAACAGGAA
blockSeqs : A GCAA T A ATTATTATTATT AA ATTT AA CA A CT TTGA A G TTT A ATTA CC A ATGTACATGTGAA TTTTTT G A TGTA T T A
blockSeqs : A . . . A . . . A A T T . G . . . . . ATTCATATCT . . . . T . .
blockSeqs : A . . . A . . . . . T T . G . . . . . AATGCGTA . . . . . . .
blockSeqs : G . . . A . . . . . T T . G . . . . . AATGGGTA . . . . . . .
blockSeqs : A . . . T . . . . . G C . A . . . . . AATGTGTA . . . . . . .
blockSeqs : A . . . A . . . . . G . . A . . . . . AATGCATG . . . . . . .
blockSeqs : A . . . A . . . . . T . . A . . . . . AATGCATA . . . . . . .
blockSeqs : G . . . A . . . . . T . . T . . . . . AATGAGTA . . . . . . .
blockSeqs : C . . . T . . . . . T . . G . . . . . AATGCGTA . . . . . . .
blockSeqs : A . . . A . . . . . T . . A . . . . . AATGAGTA . . . . . . .
blockSeqs : G . . . A . . . . . G . . G . . . . . ATGCGTA . . . . . . .
blockSeqs : A . . . A . . . . . . . . A . . . . . ATGCGTA . . . . . . .
blockSeqs : G . . . A . . . . . . . . T . . . . . ATGGTTA . . . . . . .
blockSeqs : A . . . A . . . . . . . . G . . . . . ATGCGTA . . . . . . .
blockSeqs : A . . . A . . . . . . . . G . . . . . ATATGTA . . . . . . .
blockSeqs : A . . . A . . . . . . . . A . . . . . ATGCATT . . . . . . .
blockSeqs : A . . . A . . . . . . . . T . . . . . ATGCATA . . . . . . .
blockSeqs : A . . . T . . . . . . . . T . . . . . ATGAATA . . . . . . .
blockSeqs : A . . . A . . . . . . . . G . . . . . ATTGT . . . . . . .
blockSeqs : G . . . A . . . . . . . . T . . . . . AA . . . . . . .
blockSeqs : A . . . A . . . . . . . . G . . . . . AA . . . . . . .
blockSeqs : G . . . A . . . . . . . . T . . . . . A . . . . . . .
blockSeqs : T . . . A . . . . . . . . T . . . . . . . . . . . . .
blockSeqs : G . . . A . . . . . . . . T . . . . . . . . . . .
blockSeqs : A . . . A . . . . . . . . T . . . . . . .
blockSeqs : A . . . A . . . . . . . . A . . . . .
blockSeqs : A . . . T . . . . . . . . . . . .
blockSeqs : G . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : A*********** **
originalCons : TGCGTATTTCACTCAAATAAATTCGTGGAAAACGCAAACAATTT----TG-T-TTTTA-----------AGC--GTA----CCCGT--T--ACGCAAATAATTTTC-C--TT----C-ACGCA---AAAC-A----TTGTTA--AT-ACA-----ATGCGTA---TCCAAACAGCTG------TTTCACA-TTT-C----CTG-TA-TT-TCGGTAAACAGGAA
finalCons : TGCGTATTTCACTCAAATAAATTCGTGGAAAACGCAAACAATTT----TG-T-TTTTA-----------AGC--GTA----CCCGT--T--ACGCAAATAATTTTC-C--TT----C-ACGCA---AAAC-A----TTGTTA--AT-ACA-----ATGCGTA---TCCAAACAGCTG------TTTCACA-TTT-C----CTG-TA-TT-TCGGTAAACAGGAA
Alignments
lowQualScore : 11 1111111111111111
lowQualScore : 2 0 2222 1 1 666666666666 11 2222 0 11 33 2 77 8888 1 2 222 1 3333 22 1 2222222222222222 444444 1 1 3333 3 1 1
lowQualScore : . . .... . . ............ .. .... . .. .. . .. .... . . ... . .... .. . ................ ...... . . .... . . .
lowQualScore : 2 5 7777 2 2 333333333333 77 7777 8 88 11 9 77 8888 4 9 555 4 0000 00 5 4444444444444444 444444 6 6 4444 2 7 7
consensus : TGCGTATTTCACTCAAATAAATTCGTGGAAAACGCAAACAATTT----TG-T-TTTTA-----------AGC--GTA----CCCGT--T--ACGCAAATAATTTTC-C--TT----C-ACGCA---AAAC-A----TTGTTA--AT-ACA-----ATGCGTA---TCCAAACAGCTG------TTTCACA-TTT-C----CTG-TA-TT-TCGGTAAACAGGAA
Reference ( family-643 ) : TGCGTATTTCACTCAAATAAATTCGTGGAAAACGCAAACAATTT----TG-T-TTTTA-----------AGC--GTA----CCCGT--T--ACGCAAATAATTTTC-C--TT----C-ACGCA---AAAC-A----TTGTTA--AT-ACA-----ATGCGTA---TCCAAACAGCTG------TTTCACA-TTT-C----CTG-TA-TT-TCGGTAAACAGGAA
gi|119958 : TGCATATTTCACTCAAATAAATTCATGGAAAACGCAAA---TTT----TG-T-TTTT------------AGT--GTA----CCTGT--T--ACGCAAATAATTTTC-CT-TT----C-GTGTA---CAAC-A----TTGTTA--AT-ACA-----ATGCATA---TCCAAACAGCTG------TTTCACA-TTT-C----CTG-TA-TT-TCGATAAACAGGAA
gi|119959 : TGCGTATTTCACTCAAATAAATTCATGGAAAACGCAAACAATTT----TG-T-TTTTA-----------AGC--ATA----CCCAT--T--AAGCAAATAGTTTTT-C--TT----C-ACGCA---AAAC-A----TTGTTA--AT-ACA-----ATGCGTA---TCCAAACAGCTG------TTTCACA-TTT-T----CTG-TA-TT-TCGATAAATAAGAA
gi|119960 : TGCATATTTCACTCAAATAAATTCATGGAAAATGCAAACAATTT----TG-T-TATTA-----------AGC--GTA----CCAAT--T--ACGCAAATAATTTTC-CT-TT----C-ACGCA---AAAT-A----GTGTTT--AT-ACA-----ATGGGTA---TCTAAACAGCTG------TTTCGCA-TTT-C----CTG-TA-TT-TTGATA
gi|119961 : TGCGTATTTCCCTCGAACAAATTTATGGAAA-CGCAAACAATTC----TG-T-TTTTA-----------AGC--G------CCTGT--T--ACGCAAATAATTGTC-C--TTT---C-ATGTA---AAAC-A----TTGTTA--AT-CCA-----ATGTGTA---TCCTAACAGTTG------TGTCACA-TTT-C----CTG-TA-TT-TCAATAAACAGG
gi|119962 : TGCGTATTTCACTAAAATAAATTTGTTTAAAATGCGAACAATTT----TG-T-TTTAT-----------AGC--ATA----CCGGT--T--ATGCAAATAATTTTC-CT-TT----C-ACGCA---AAAC-A----TTGTTA--AT-ACATGTACATGTGAA---TCCAAACAGCTA------TTTCACA-TTT-C----CTG-TA-TT-TCAGTAAACAG
gi|119963 : TGTGTATTTCACTCAAATAAATTCATGGAAAATGCAAACAATTT----TG-T-TTTAA-----------AGT--GTA----CCTGT--T--ACACAAATAATGTTC-CT-TT----C-ACAC----AAAC-A----TTGTTA--AT-A-------------------CAAACAGCTG------TTTCATA-TTTACTGTACTG-TA-TT-TTAATAAACATGAA
gi|119964 : TGCGCATCACACTCAAATAATGTCATAGAAAATGCAAACAATTT----T-----TTTA-----------ACC--GTA----CCAGT--T--ACGCAAATAATTTTC-C--TT----T--CACA---AAAC-A----ATGTTA--AT-ACA-----ATGCATG---TCAAAACAGCTG------TTATACA-TTT-C----CTG-TA-TT-TCAGTAACCAG
gi|119965 : TGCATATTTCACTCAAATAAATTCACGGAAAACGCAAACAATTT----TATT-TTTTA-----------ATC--ATA----CCTGT--T--ACGCAAATAATTTTCAT--TT----C-ACACA---AAAC-A----TTGTTACCGTAACA-----ATGCATA---TCCAAACAGCTG------TTT---A-TTT-C----CTG-T
gi|119966 : TGCGTATTTCACACCAATAAATTTGTGGAAAATGCAAACAATTT----TG-T-TTTTT-----------AGC--GTA----CCTGT--T--ACACAAGTAATTTTCAA--TT----C-ACTCA---AAAC-A----TTGTTA--AT-AC------ATGCGTA---TCCAAACAGCTG------ATTCATA-TTT-C----T---TA-TTATTGGTAAACAGG
gi|119967 : TGCATATTTCACTCAAATAAATTCCTAGAAAACGCTAATAATAT----TG-T-TTGTA-----------AGC--GCA----CCCAT--T--ACGCAAAACAT--------TT----C-ACGCA---AAAC-A----GTGTTA--AT-AC------ATGCGTA---TCCAAACAGCTG------TTTGGCA-TTT-C----CTG-TA-TT-TCAGTAAACAG
gi|119968 : TGCACATTTGACTAAAATAAATTCATGGAAAATGTAAACAATTT----TG-TATTTTA-----------ATC--ATA----TCCGT--T--ATGCAAATAATTTTC-C--TTT---C-ACACA---AAAC-A----TTGTAA--AT-AAA-----ATGAGTA---TCCAAACAGCTG------TTTAACA-ATT-C----CTG-CA------GG-AAACAG
gi|119969 : TGCGTATTTCACCCAAATAAATTTGTGGTAAACACAAACAATTT----TG-T-TTTTA-----------AGT--GTA----TCCGT--T--ACACATATATTTTTC-T--TT----T-ACGGG---AAAC-A----TTGCTA--AT-AC------ATGGTTA---TCAAAACAGCTG------TTTCATA-TTT-C----TTG-TA-TT-TTGGTAAACACGAA
gi|119970 : TGCGTATTTCACTCAAATAAATTCATGGAAAACACAAACAATTT----TG-T-TTTTA-----------AGT--GCA----CCCGT--T--ACTCAAAATATTTGC-C--TT----TAACACA---TAAC-A----TTGTTT--AT-ACA-----ATGCGTA---TTCAAACA-------------------TT-A----CTG-TATTT-TCACTTAACAGGAA
gi|119971 : TGCATATTTCACTCAAACAAATTCGCGGAAAAAGTAAACAG--T----TG-T-TTTCA-----------ATA--GTA----CCCAT--T--ACAC
gi|119971 : CAATTT----TG-T-TTTCA-----------AGT--GTA----CCCGT--T--ACACGAATAATTTTT-CCTTT----C-ATTCA---AAAC-AATTATTGTTG--AT-ACA------TGCGTA---TCCAAATAGCTG------ATTTATA-TTT-C----CTG-TA-TT-TCTGTAAACAGGAAgcctggcaattttgttttcaagtgtacccgttacacgaataatttttcctttcattcaaaacaattattgttgatacatgcgtatccaaatagctgatttatatttcctgtatttctgtaaacaggaa
gi|119972 : tgcatatttcactcaaacaaattcgcggaaaaagtaaacagttgttttcaatagtacccattacacgcctggTACGTATTTCACTCAAATAAATTCATGAAAAACGCAAACAATTT----TA-T-TT------------------------------------GCACAAATAATTTTC-C--TTT---C-GCGCA---AA-C-A----TTGTAA--AT-ACA-----A--------------ACAGCTG------TTCAACA-TTT-C----CTG-TA-TT-TTAATATACAGGAA
gi|119973 : TGTGTATTTCACTCAAATAAATTCATGGAAAACGCGAAATATTT----T--T-TTTTATTATTATTATTATT--GTA----TCCGTAAT--ACGCAAATAATTTCC-T--TT----C-ACGCA---AAAC-A----TTGTTA--AT---A-----ATGAGTA---TCAAAACATCTG------TTTAACA-TTT-T----CTGTTA-GT-CAGATAAACCGG
gi|119974 : TGCATATTTCATTAAAATAAATTCAAGGAAAATGCA------TT----TG-T-TTTTA-----------AGT--GTA----ACCAT--T--ACACAAAAAAGATTC-CG-TT----C-ACACA---AAAT-A----TTG--------------------------TCCAAACAGCTATTTTTTTTTTACA-TTT-C----CTG-TA-TT-TCGATAAACAGGAA
gi|119975 : TGAGTATTTTACTCA--TAAATTCATGGAAAACGCAAACAATTT----TG-A-TTTT------------GGC--GTC----CCTGT--T--AGGCAATTAATTTTC-TG-TT----C-ACTCA---AACCAA----TTATAA--AT-AT------ATATGTA---TCAAAACAGCTG------TTTCA
gi|119976 : TGTGTATTTCACTCAAATAAATTCATGGAAAATACTAACAAATT----TC-T-TTTTA-----------AGG--GTA----CCCGT--T--CCCCAAATAATTTTC-CT-TT----C-ACTCA----------------TTA--AT-AC------ATGCATT---TTCAAA------------TTTCATAGTTT-C----CAGTTA-TT-
gi|119977 : TGCATATTTCACTCAAATAAATTCAT-GAAAACACAAAC-ATTT----T--T-TTTT------------AGC--GTT----ACCAC--T--GTACAAATAATTTTC-CT-TT----C-ATGCA---AAAC-A----TT-------T-ATA-------------------------TG------TTTCACA-TTT-C----CTC-TA-TT-TATGTAAACAGG
gi|119978 : TGCGTATTTCACTCATATAAATTCGTAGAAAA-AAAAACAAATT----TG-T-TTTTT-----------AGT--ATA----CCTGT--T--ATGCA
gi|119979 : TGTGTATTTCACCAAAATAAAATCATGGTAACTGCAAATAATTT----TA-T-TTTTA-----------AAC--ATA----CTAGT--T--GCACAAATAATTGTC-T--TG----C-ACTCATTTTAAC-G----TTTTAA--AT-ATA-----
gi|119980 : TGGGTATTTCACTCAAATAAATTTGTGGAAAAC-C---CAATTT----TG-T-TTTTA-----------AGC--GTA----C
gi|119981 : GCGTATTTCAATTAAATAAATTCTTGGAAAATGTTAATAATTT----TG-T-TTGTA-----------AAC--AT---------T--TA-AGGCTAATAATTTTC-C--TT----T-G------------A----CTG--A--AT-ACA-----TTGT-----------ACAGCAG------TTTTATA-TTT-C----CTG-TA--T-TCAGTATACAGGAA
gi|119982 : CATATTTCGCTCAAACAAAATCGTGGAAAATGCAAAAAAATT----TG-T-TT---------------AC--GTA----TGATT--T--ACAC-AATGATTT
gi|119983 : GTATTTCACTCAAATAAAGTCATAGAAAATGCAAAAAATTT----TG-T-TTT-A-----------AGC--GTA----CCTGT--T--ATGCAAATAGTTTTC-CT-TT----T-ACGCA---AAAC-A----TTGTTA--GT-AC------ATGCATA---ACCAAACAGCTG------TTTTACA-TTT-C----CTG-TA-TT-TTGATAAACAG
gi|119984 : TATTTT--CCAAATAACTTCATGCAAAATGCAAACA---TGCAATG-T-TTTTA-----------AGCAAATAATTTTCCTT--TCAATGCAAATAATTGTC-CT-TT----C-ACTCA---AAGC-A----TTGTT
gi|119985 : GAAAATGCAAGCAAATT----TG-T-TTTTA-----------AGC--GTA----CCCAT--T--ACACATATAATTTTC-TG-TT----C-ACTCA---TAAC-A----TTGTAA--A----------------------CAAACA--TG-------TTCATA-TTT-C----CTG-TA-TT-TCAGTAAACAGtgagtaaacaggaaacatccagataaaccggttccaggttatcacagttcgtacttcataagc
gi|119986 : atttgcacattgaatatctacatTTCACTTAAATAACTTCATGCAAAATGCAAACAAATG----TG-T-TTTTA-----------AGC--ATA----CCTGT--T--ATGCAATTATTTTCC-T--TT----C-ACTCA---AAGC-A----TTGTTA--AT-AC------ATGAATA---CCCAAACAGCTG------TTTCATA-TTT-C----CTG-TA-TT-TGAGTAAACAGGAA
gi|119987 : TATATTTGTGGAAAGCGCAAACAATTT----CA-T-TTTTA-----------AGC--ATA----CCTAT--T--ATACATGTAGTTTTC-C--TTC---C-ACTCA---AAAC-A----TAATTA--AT-AC------ATTCATATCTTCCCAACAGCTG------TTTCATA-TTT-C----CTT-TG-TT-TTGGTAAACAGGAA
gi|119988 : TTG----TG-T-TTTTT-----------TGT--GTA----CCCGA--T--ATGCAAATAATTTTT-C--TTTTGAC-ACACA---AAAT-G----TT--TA--AT-ACA-----A--------------ACAGCT-------TTTCACA-TTT-C----CTG-TA-TT-TCAATAAACAGGAA