lowQualScore : 1 33333 11 111111111 1111 11111 222222222222222 3 1
lowQualScore : 22 1 6 22222 22 1 22 3333 33 4 555 3 8888 66 5 99 000000000 7777 8 44 77777 777 999999999999999 11 1 6 9 1 0 2
lowQualScore : .. . . ..... .. . .. .... .. . ... . .... .. . .. ......... .... . .. ..... ... ............... .. . . . . . .
lowQualScore : 00 4 7 66666 00 5 00 3333 11 6 888 6 5555 11 0 22 333333333 0000 0 66 88888 888 222222222222222 66 4 0 7 7 7 0
consensus : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG-GGTG--GGC-AGGTCCCC--TAGCG----TATATATAGAGA-CAAGGAAAGAAACAAACGTGGACCCCTTCCCCGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-CGAAAAC----GAT-GTTNAAAGG----TAAATGTTCG----GTGTT------AACAGCGTAATTTTTGTCCACCAACATCTGTGGCAACGGAAGTAGCATGTTCGGATATCCTCGGCTTTATT-TTTTCAAACTGACCACGCGCTGAAGCG
Reference ( gi|32591 ) : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAAAGGGGAGGGG--GGC-AGGTCCCC--TAGCG----TATATATAGAGA-AAAGGAAAGAAACAAACGTGGACCCTTTCCCCGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-TAAAAAC----GAT-GTTTAAAGG----TAAATGTTCG----GCGTT------AACAGCATAATTTTTGTCCACCAATATCTGTGGCAACGGAAGTAGCATGTTCGGATATCTTCGGCTTTATTGTTTTCAAACTGGCCACGCCCTGAAGCG
gi|32593 : CACAGGAGCTTGAGAA--GTGGA-TAATAACGTTTAATGGGG---TT--GGC-AGGTCCCC--AAGCG----TATATATAGAGA-CAAGGAAAGAAACAAACGTGGACCCCTTCCCCAATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAATCCGGTCTTGTTCTATCGCTGAGTG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGCAAAG-TAAAAAC----GAT-CTTGAAAGG----TTAATGTTCG----GCGTT------AACAGCATACGTTTTGTCCACCAACATCTATGACAACGGAAGTAGCCTGTTCGGATATCATCGGCTTTATTTTTTTCAAACTGGCCTCGCTCTGAAGCG
gi|32595 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGTTG--GTG--GGC-AGGTCCCC--TAGCG----TATATATAGAAACAAAGGAAAGAAACAAACGTGGACCCCT----------AACGTGAAGTTTCTAAGTCAATAGGCCATAAATTTTAACAAACCCGGTCTCGTTCTATTGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-CAAAAAC----GAT-GCTTAAAGG----TAAATATTTG----GTGCT------AACAGCATAATTTTTGTCTACCAACATCTGTGGCAACGGAAGTATCATGTTCGGATATCCTTGGCTTTATT-TTTTCAAACTGACCACGCGCTGAAGCG
gi|32597 : CACAGGAGCTTGGAGA--GTGGA-TAATAACGTTTAATGGTG--GTG--GGC-AGGTCCCC--TAGCG----TTTAGATAGAGA-CAAGGAAAGAAACAAACGTGGACCCTT-CCCCGATCAAAATTAGAGTTTCTAAGTCGATAGGCCATTTATTTTAACAAACCTGGTCTCTTTCTATCGCTCAGTG---ATT-TATC----TTCAA--G-ATCGATC--CGGTTAGTAAAGCCAAAAAC----GAT-GTGAAAAGG----TAAATATTCG----GTGTT------AACAGCATACATTTTATCGACCAACATCTGTGGCAACGGAAGTAGCATGTTCGGATATCCTCGGCTGTATT-TTTTCAAACTGACAACGCGCTGAAACG
gi|32592 : CACAGGAGCTTGGGTA--GTGGA-TAATAACGTTTAATGGGGATGTG----C-TGGTCCCC--GAGCG----TATATATAGAGA-CAAGGAAAGAAACAAACGTGGACTCCTTCCTCGACCAAAATTAGAGTTTCCAAGTCAATAGGCCATCAATTTTAACACATCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGTAA--CGATGCTTA----TGCATACATTGGCC-GTTTGAAGA-----AGATG-TCGCACTGTGTTCCCCAAAACGGCGTAATTTTTTATCATCAACAGGTCTGGCAACGGA
gi|32598 : CACAGAAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG--GTG--GGC-AGGTCCCC--TAGTG----TATATATAGAGA-AAAGGAAAGAAACAAACGTGGACCCCTTCCCCGATCAAAATTAGAGTTTCTAATTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAAC----ATT-TACT----TT
gi|32596 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGGATGGG----C-AGGTCCCC--TAGCG----TATACATAGAGA-CAAGGACA--AACA--CGTGGACCCCTTCCCAGATCAAAATTAGAGTTTCTAAGTCAATAGGCTATAAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATCGTACCGTTGTTTAT--GCATTCATCAGCGGT---T-----TGAAGAC----GATAGTGCACTGGTTCCTAAA---------------------AACTGCGTCATGTTTGTCTACCAACATCTGTGGCAACGGA
gi|32599 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGA--GTG--GGC-AGGTCCCC--TAGCG----TATATATAGAGA-CAAGGAAAGAAAGAAACGCGGACCTCTTCTCTGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATTAATTTTAACAAACCCGTTCTCGTTCTATCGCTGAATGATAATT-TATA----TTCAA--
gi|32594 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG--GTG--GGC-AGGTCCCT--TAGCG----TATATATAGAGA-CAATGAAAGAAACCAACGTAGACATCTTCCCCGATAAAAAATAGAATTTCTAAGTAAATAGGCAATACATTTTAACAAACTCTGTCTCGTTCTATCGCTGAATG---ATT-TATT----TTCAA--T-ATC
gi|32601 : CACAGGCGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGGATGGC----C-AGGTCCCCCCTAGCG----TATATATAGAAA-CAAAGAAAGAAAC----GCGGACCCCTTCCCCGATCAAAATTAGAGTTTCTGAGCCAATAGGCCATCAATTTTGATAAACCCGGTCTCGTTCTATCGCTGAATG---ctaccgatatttatatataagtcggccgtttgaagaagatgtcgcactgggttccccaaaacgacgtatttttttatcgtcaacgggtctggcaacgaa
gi|32602 : CACAGGAACCTGGGGA--GTGGA-TAATAACGTTTAATGGG--GGTG--GGC-AGGTCCCC--TAGCG----TATATACAGAGA-
gi|32603 : CACAGGAGCTTGGGGA--GTGGA-TGATAACGTTTAATGG---GGTG--GGC-AGGTCCCC---AGC------ATATATAGAGA-c
gi|32604 : CACAGGAACCTGGGGA--GTGGA-TAATAACGTTTAATGGG--GGTG--GGC-AGGTCCTC--TGGCG----TACATAAAGc
gi|32606 : CACAGGAGCTTGGGGA--GTGGG-TAATAACGTTTGATGGGGGTGGG-------GGTCCTC--TCGCG----TATATAAAG
gi|32600 : CACAGGAGCTTGGGGACGGTG---TAATAAAGTTTAA--TGGTGGTG--GGC-AGGTCCTC--TGGCA----TATATAAAGAGA-
gi|32607 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGG--GGTG--GGC-AG--CCCC--c
gi|32605 : CACAGGAATTTTGGGA--GTGGA-TAAT------TAATGGGG--GTG--GGC-AGGTCCCC--TAGCGTCTCTATATATA
gi|32608 : CATAGGAGCTTTGGGA--GCGGA-TAATTACGTTTAATGGGG
gi|32609 : ACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTGATGGGGGTGGG--GG-----TCCTC--TGGTG----TATATAAAGAGA-CAAGGAAAGAAACAAACGTTGATCCCTTTCCCGATCAAAATTTGAATTTCTAAGTCAATAGGCTATCAATTTTAACAAACCCGGTATCATTCTATCACTGAATG---ATC-AA-------TGAAATG-ATCAATC--AGG-AACTAAActg
gi|32610 : GACCTTGGGGA--GTGGA-TAATAATGTTTAATGGGG--GTG--GGC-AGGTCCTC--CAGCG----TATATAAAGAGA-CGAGGAAAGAAACAAACGTTGACCCCTTCCCCGATCAAAATTAGAATTTCTAAGTCAATAGACCATCAATTTTAACAAACCCGATCTCTTTCTATTGCTGAATG---ATT-TATC----GGCAA--G-ATTG
gi|32611 : GACCTTGGGGT--GTG---TAATAACGTTTAATGGGG--GTG--GGC-AGGTCCTC--TGGTG----TATATAAAGAGA-
gi|32612 : AGCGTAGGGA--ATGGA-TAATAACGTTTAATGGG--GGTG--GAC-AGGTCCCC--TTACG----TAc
gi|32613 : GCGTAGGGA--GTGGA-TAATAACG-TTAAATGG--GGTG--GGC-AGGTCCCC--TAATG----TA
gi|32614 : TAGGGA--GTGGA-TAATAACGTT-AAATGGG-GGTG--GTC-AGGTCCCC--TAACG----TATATATAGAGA-
gi|32615 : TAGGGA--GTGGA-TAATAACGTTTAATGGG--GTAG--GGC-AGGTCCCC--TAGCG----TAc
gi|32616 : TAGGGA--GTGGA-TAATAACGTTTAATGG---GGTG--GTC-AGGTCCCC--TAGCG----TA
gi|32617 : GAGA--CTGGA-TAATAACGTTTAA----TAGGGGTTGGC-AGGTCCCC--AAGCA----TAT
gi|32618 : GGGG--GGGGG-TAATAACGTTTAACGGG--GGGT--GGCAAGGTCCCT--TAGTG----TA
gi|32619 : GGAGTAATAACGTTTAATGGGG---TG--GGT-AGGTCCCC--TAACG----TATATATA
gi|32620 : AAGTCAATAGGCCATCAATTTTAACAAACCCGCTCT
gi|32621 : CCCGGTCTCGTTCTATCGCTGAATG---ATT-TAT
Alignments
lowQualScore : 111 111111 1111 11111 333333333333333 1 1
lowQualScore : 22 1 7 333 1 22 3333 3 555 3 7777 55 4 66 555 222222 2222 666 1 77777 8 777777777777777 1 0 0 0 2
lowQualScore : .. . . ... . .. .... . ... . .... .. . .. ... ...... .... ... . ..... . ............... . . . . .
lowQualScore : 00 4 2 555 4 00 1111 3 444 3 7777 55 4 99 000 222222 1111 777 0 11111 4 444444444444444 6 2 0 0 5
consensus : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG-GGT-GGGCAGGTCCCC--TAGCG----TATATATAGAGACAA-GGAAAGAAACAAACGTGGACCCCTTCCCCGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-CGAAAAC----GA-C-GTTTAAAGG----TAAATGTTCG----GCGTT------AACGGCGTAATTTTTGTCCACCAACATCTGTGGCAACGGAAGTAGCATGTTCGGATATCCTCGGCTTTA-TT-TTTTCAAACTGGCCACGCNCTGAAGCG
Reference ( family-631 ) : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG-GGT-GGGCAGGTCCCC--TAGCG----TATATATAGAGACAA-GGAAAGAAACAAACGTGGACCCCTTCCCCGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-CGAAAAC----GA-T-GTTNAAAGG----TAAATGTTCG----GTGTT------AACAGCGTAATTTTTGTCCACCAACATCTGTGGCAACGGAAGTAGCATGTTCGGATATCCTCGGCTTTA-TT-TTTTCAAACTGACCACGCGCTGAAGCG
gi|32591 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAAAGGGGAGGG-GGGCAGGTCCCC--TAGCG----TATATATAGAGAAAA-GGAAAGAAACAAACGTGGACCCTTTCCCCGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-TAAAAAC----GA-T-GTTTAAAGG----TAAATGTTCG----GCGTT------AACAGCATAATTTTTGTCCACCAATATCTGTGGCAACGGAAGTAGCATGTTCGGATATCTTCGGCTTTA-TTGTTTTCAAACTGGCCACGCCCTGAAGCG
gi|32592 : CACAGGAGCTTGGGTA--GTGGA-TAATAACGTTTAATGGGG-A-T-GTGCTGGTCCCC--GAGCG----TATATATAGAGACAA-GGAAAGAAACAAACGTGGACTCCTTCCTCGACCAAAATTAGAGTTTCCAAGTCAATAGGCCATCAATTTTAACACATCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGTAA--CGATGCTTA----TGCATACATTGGC-C-GTTTGAAGA-----AGATG-TCGCACTGTGTTCCCCAAAACGGCGTAATTTTTTATCATCAACAGGTCTGGCAACGGA
gi|32593 : CACAGGAGCTTGAGAA--GTGGA-TAATAACGTTTAATGGGG---T-TGGCAGGTCCCC--AAGCG----TATATATAGAGACAA-GGAAAGAAACAAACGTGGACCCCTTCCCCAATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAATCCGGTCTTGTTCTATCGCTGAGTG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGCAAAG-TAAAAAC----GA-T-CTTGAAAGG----TTAATGTTCG----GCGTT------AACAGCATACGTTTTGTCCACCAACATCTATGACAACGGAAGTAGCCTGTTCGGATATCATCGGCTTTATTT-TTTTCAAACTGGCCTCGCTCTGAAGCG
gi|32594 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG--GT-GGGCAGGTCCCT--TAGCG----TATATATAGAGACAA-TGAAAGAAACCAACGTAGACATCTTCCCCGATAAAAAATAGAATTTCTAAGTAAATAGGCAATACATTTTAACAAACTCTGTCTCGTTCTATCGCTGAATG---ATT-TATT----TTCAA--T-ATCCTAC--CGATATTTATAT-ATAAGTC----GGCC-GTTTGAAGA-----AGATG-TCGCACTGGGTTCCCCAAAACGACGTATTTTTTTATCGTCAACGGGTCTGGCAACGAA
gi|32595 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGTTG-G-T-GGGCAGGTCCCC--TAGCG----TATATATAGAAACAAAGGAAAGAAACAAACGTGGACCCCT----------AACGTGAAGTTTCTAAGTCAATAGGCCATAAATTTTAACAAACCCGGTCTCGTTCTATTGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-CAAAAAC----GA-T-GCTTAAAGG----TAAATATTTG----GTGCT------AACAGCATAATTTTTGTCTACCAACATCTGTGGCAACGGAAGTATCATGTTCGGATATCCTTGGCTTTA-TT-TTTTCAAACTGACCACGCGCTGAAGCG
gi|32596 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG-A-T-GGGCAGGTCCCC--TAGCG----TATACATAGAGACAA-GGACA--AACA--CGTGGACCCCTTCCCAGATCAAAATTAGAGTTTCTAAGTCAATAGGCTATAAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATCGTACCGTTGTTTAT--GCATTCATCAGCGGT---T-----TGAAGAC----GA-TAGTGCACTGGTTCCTAAA---------------------AACTGCGTCATGTTTGTCTACCAACATCTGTGGCAACGGA
gi|32597 : CACAGGAGCTTGGAGA--GTGGA-TAATAACGTTTAATGGTG-G-T-GGGCAGGTCCCC--TAGCG----TTTAGATAGAGACAA-GGAAAGAAACAAACGTGGA-CCCTTCCCCGATCAAAATTAGAGTTTCTAAGTCGATAGGCCATTTATTTTAACAAACCTGGTCTCTTTCTATCGCTCAGTG---ATT-TATC----TTCAA--G-ATCGATC--CGGTTAGTAAAGCCAAAAAC----GA-T-GTGAAAAGG----TAAATATTCG----GTGTT------AACAGCATACATTTTATCGACCAACATCTGTGGCAACGGAAGTAGCATGTTCGGATATCCTCGGCTGTA-TT-TTTTCAAACTGACAACGCGCTGAAACG
gi|32598 : CACAGAAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG--GT-GGGCAGGTCCCC--TAGTG----TATATATAGAGAAAA-GGAAAGAAACAAACGTGGACCCCTTCCCCGATCAAAATTAGAGTTTCTAATTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAAC----ATT-TACT----TT
gi|32599 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGA-G-T-GGGCAGGTCCCC--TAGCG----TATATATAGAGACAA-GGAAAGAAAGAAACGCGGACCTCTTCTCTGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATTAATTTTAACAAACCCGTTCTCGTTCTATCGCTGAATGATAATT-TATA----TTCAA--
gi|32600 : CACAGGAGCTTGGGGACGGTG---TAATAAAGTTTAATGGTG-G-T-GGGCAGGTCCTC--TGGCA----TATATAAAGAGAC
gi|32601 : CACAGGCGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG-A-T-GGCCAGGTCCCCCCTAGCG----TATATATAGAAACAA-AGAAAGAAAC----GCGGACCCCTTCCCCGATCAAAATTAGAGTTTCTGAGCCAATAGGCCATCAATTTTGATAAACCCGGTCTCGTTCTATCGCTGAATG---
gi|32602 : CACAGGAACCTGGGGA--GTGGA-TAATAACGTTTAAT-GGG-GGT-GGGCAGGTCCCC--TAGCG----TATATACAGAGAC
gi|32603 : CACAGGAGCTTGGGGA--GTGGA-TGATAACGTTTAAT--GG-GGT-GGGCAGGTCCCC---AGC------ATATATAGAGAC
gi|32604 : CACAGGAACCTGGGGA--GTGGA-TAATAACGTTTAAT-GGG-GGT-GGGCAGGTCCTC--TGGCG----TACATAAAG
gi|32605 : CACAGGAATTTTGGGA--GTGGA-TAAT------TAATGGGG--GT-GGGCAGGTCCCC--TAGCGTCTCTATATATA
gi|32606 : CACAGGAGCTTGGGGA--GTGGG-TAATAACGTTTGAT-GGG-GGT-GGG--GGTCCTC--TCGCG----TATATAAAG
gi|32607 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAAT-GGG-GGT-GGGCAG--CCCC--
gi|32608 : CATAGGAGCTTTGGGA--GCGGA-TAATTACGTTTAATGGGG-
gi|32609 : ACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTGATGGGG-G-T-GGG--GGTCCTC--TGGTG----TATATAAAGAGACAA-GGAAAGAAACAAACGTTGATCCCTTTCCCGATCAAAATTTGAATTTCTAAGTCAATAGGCTATCAATTTTAACAAACCCGGTATCATTCTATCACTGAATG---ATC-AA-------TGAAATG-ATCAATC--AGG-AACTAAActg
gi|32610 : GACCTTGGGGA--GTGGA-TAATAATGTTTAATGGGG--GT-GGGCAGGTCCTC--CAGCG----TATATAAAGAGACGA-GGAAAGAAACAAACGTTGACCCCTTCCCCGATCAAAATTAGAATTTCTAAGTCAATAGACCATCAATTTTAACAAACCCGATCTCTTTCTATTGCTGAATG---ATT-TATC----GGCAA--G-ATTG
gi|32611 : GACCTTGGGGT--GTG---TAATAACGTTTAATGGGG--GT-GGGCAGGTCCTC--TGGTG----TATATAAAGAGAC
gi|32612 : AGCGTAGGGA--ATGGA-TAATAACGTTTAAT-GGG-GGT-GGACAGGTCCCC--TTACG----TA
gi|32613 : GCGTAGGGA--GTGGA-TAATAACGTTAAAT--GG-GGT-GGGCAGGTCCCC--TAATG----TA
gi|32614 : TAGGGA--GTGGA-TAATAACGTTAAATGGGG-G-T-GGTCAGGTCCCC--TAACG----TATATATAGAGAC
gi|32615 : TAGGGA--GTGGA-TAATAACGTTTAAT--GG-GGTAGGGCAGGTCCCC--TAGCG----TA
gi|32616 : TAGGGA--GTGGA-TAATAACGTTTAAT--GG-GGT-GGTCAGGTCCCC--TAGCG----TA
gi|32617 : GAGA--CTGGA-TAATAACGTTTAAT-AGG-GGT-TGGCAGGTCCCC--AAGCA----TAT
gi|32618 : GGGG--GGGGG-TAATAACGTTTAACGGGG-GGT-GGCAAGGTCCCT--TAGTG----TA
gi|32619 : GGAGTAATAACGTTTAATGGGG---T-GGGTAGGTCCCC--TAACG----TATATATA
gi|32620 : AAGTCAATAGGCCATCAATTTTAACAAACCCGCTCT
gi|32621 : CCCGGTCTCGTTCTATCGCTGAATG---ATT-TAT
Alignments
lowQualScore : 111 111111 1111 11 3333333333333333333 1 1
lowQualScore : 22 1 7 333 1 22 3333 3 555 3 7777 55 4 66 555 222222 2222 22 5 77 5 5555555555555555555 2 1 0 0 0 1
lowQualScore : .. . . ... . .. .... . ... . .... .. . .. ... ...... .... .. . .. . ................... . . . . . .
lowQualScore : 00 4 2 555 4 00 1111 3 444 3 7777 55 4 99 000 222222 1111 00 0 99 0 6666666666666666666 7 6 2 0 0 0
consensus : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG-GGT-GGGCAGGTCCCC--TAGCG----TATATATAGAGACAA-GGAAAGAAACAAACGTGGACCCCTTCCCCGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-CGAAAAC----GA-CGTTTAAAGGTAAAT--GTTCG----GCGTT------A---ACGGCGTAATTTTTGTCCACCAACATCTGTGGCAACGGAAGTAGCATGTTCGGATATCCTCGGCTTTA-TT-TTTTCAAACTGGCCACGCNCTGAAGCG
Reference ( family-631 ) : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG-GGT-GGGCAGGTCCCC--TAGCG----TATATATAGAGACAA-GGAAAGAAACAAACGTGGACCCCTTCCCCGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-CGAAAAC----GA-CGTTTAAAGGTAAAT--GTTCG----GCGTT------A---ACGGCGTAATTTTTGTCCACCAACATCTGTGGCAACGGAAGTAGCATGTTCGGATATCCTCGGCTTTA-TT-TTTTCAAACTGGCCACGCNCTGAAGCG
gi|32591 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAAAGGGGAGGG-GGGCAGGTCCCC--TAGCG----TATATATAGAGAAAA-GGAAAGAAACAAACGTGGACCCTTTCCCCGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-TAAAAAC----GA-TGTTTAAAGGTAAAT--GTTCG----GCGTT------A---ACAGCATAATTTTTGTCCACCAATATCTGTGGCAACGGAAGTAGCATGTTCGGATATCTTCGGCTTTA-TTGTTTTCAAACTGGCCACGCCCTGAAGCG
gi|32592 : CACAGGAGCTTGGGTA--GTGGA-TAATAACGTTTAATGGGG-A-T-GTGCTGGTCCCC--GAGCG----TATATATAGAGACAA-GGAAAGAAACAAACGTGGACTCCTTCCTCGACCAAAATTAGAGTTTCCAAGTCAATAGGCCATCAATTTTAACACATCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGTAA--CGATGCTTA----TGCATACATTGGC-CGTTTGAAGA-AGAT--G-TCGCACTGTGTTCCCCAAA---ACGGCGTAATTTTTTATCATCAACAGGTCTGGCAACGGA
gi|32593 : CACAGGAGCTTGAGAA--GTGGA-TAATAACGTTTAATGGGG---T-TGGCAGGTCCCC--AAGCG----TATATATAGAGACAA-GGAAAGAAACAAACGTGGACCCCTTCCCCAATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAATCCGGTCTTGTTCTATCGCTGAGTG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGCAAAG-TAAAAAC----GA-TCTTGAAAGGTTAAT--GTTCG----GCGTT------A---ACAGCATACGTTTTGTCCACCAACATCTATGACAACGGAAGTAGCCTGTTCGGATATCATCGGCTTTATTT-TTTTCAAACTGGCCTCGCTCTGAAGCG
gi|32594 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG--GT-GGGCAGGTCCCT--TAGCG----TATATATAGAGACAA-TGAAAGAAACCAACGTAGACATCTTCCCCGATAAAAAATAGAATTTCTAAGTAAATAGGCAATACATTTTAACAAACTCTGTCTCGTTCTATCGCTGAATG---ATT-TATT----TTCAA--T-ATCCTAC--CGATATTTATAT-ATAAGTC----GGCCGTTTGAAGA-AGAT--G-TCGCACTGGGTTCCCCAAA---ACGACGTATTTTTTTATCGTCAACGGGTCTGGCAACGAA
gi|32595 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGTTG-G-T-GGGCAGGTCCCC--TAGCG----TATATATAGAAACAAAGGAAAGAAACAAACGTGGACCCCT----------AACGTGAAGTTTCTAAGTCAATAGGCCATAAATTTTAACAAACCCGGTCTCGTTCTATTGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-CAAAAAC----GA-TGCTTAAAGGTAAAT--ATTTG----GTGCT------A---ACAGCATAATTTTTGTCTACCAACATCTGTGGCAACGGAAGTATCATGTTCGGATATCCTTGGCTTTA-TT-TTTTCAAACTGACCACGCGCTGAAGCG
gi|32596 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG-A-T-GGGCAGGTCCCC--TAGCG----TATACATAGAGACAA-GGACA--AACA--CGTGGACCCCTTCCCAGATCAAAATTAGAGTTTCTAAGTCAATAGGCTATAAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATCGTACCGTTGTTTAT--GCATTCATCAGCGGT---T-----TGAAGAC----GA-----TA---GTGCACTGGTTC--------CT------AAAAACTGCGTCATGTTTGTCTACCAACATCTGTGGCAACGGA
gi|32597 : CACAGGAGCTTGGAGA--GTGGA-TAATAACGTTTAATGGTG-G-T-GGGCAGGTCCCC--TAGCG----TTTAGATAGAGACAA-GGAAAGAAACAAACGTGGACCC-TTCCCCGATCAAAATTAGAGTTTCTAAGTCGATAGGCCATTTATTTTAACAAACCTGGTCTCTTTCTATCGCTCAGTG---ATT-TATC----TTCAA--G-ATCGATC--CGGTTAGTAAAGCCAAAAAC----GA-TGTGAAAAGGTAAAT--ATTCG----GTGTT------A---ACAGCATACATTTTATCGACCAACATCTGTGGCAACGGAAGTAGCATGTTCGGATATCCTCGGCTGTA-TT-TTTTCAAACTGACAACGCGCTGAAACG
gi|32598 : CACAGAAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG--GT-GGGCAGGTCCCC--TAGTG----TATATATAGAGAAAA-GGAAAGAAACAAACGTGGACCCCTTCCCCGATCAAAATTAGAGTTTCTAATTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAAC----ATT-TACT----TT
gi|32599 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGA-G-T-GGGCAGGTCCCC--TAGCG----TATATATAGAGACAA-GGAAAGAAAGAAACGCGGACCTCTTCTCTGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATTAATTTTAACAAACCCGTTCTCGTTCTATCGCTGAATGATAATT-TATA----TTCAA--
gi|32600 : CACAGGAGCTTGGGGACGGTG---TAATAAAGTTTAATGGTG-G-T-GGGCAGGTCCTC--TGGCA----TATATAAAGAGAC
gi|32601 : CACAGGCGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG-A-T-GGCCAGGTCCCCCCTAGCG----TATATATAGAAACAA-AGAAAGAAAC----GCGGACCCCTTCCCCGATCAAAATTAGAGTTTCTGAGCCAATAGGCCATCAATTTTGATAAACCCGGTCTCGTTCTATCGCTGAATG---
gi|32602 : CACAGGAACCTGGGGA--GTGGA-TAATAACGTTTAAT-GGG-GGT-GGGCAGGTCCCC--TAGCG----TATATACAGAGAC
gi|32603 : CACAGGAGCTTGGGGA--GTGGA-TGATAACGTTTAAT--GG-GGT-GGGCAGGTCCCC---AGC------ATATATAGAGAC
gi|32604 : CACAGGAACCTGGGGA--GTGGA-TAATAACGTTTAAT-GGG-GGT-GGGCAGGTCCTC--TGGCG----TACATAAAG
gi|32605 : CACAGGAATTTTGGGA--GTGGA-TAAT------TAATGGGG--GT-GGGCAGGTCCCC--TAGCGTCTCTATATATA
gi|32606 : CACAGGAGCTTGGGGA--GTGGG-TAATAACGTTTGAT-GGG-GGT-GGG--GGTCCTC--TCGCG----TATATAAAG
gi|32607 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAAT-GGG-GGT-GGGCAG--CCCC--
gi|32608 : CATAGGAGCTTTGGGA--GCGGA-TAATTACGTTTAATGGGG-
gi|32609 : ACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTGATGGGG-G-T-GGG--GGTCCTC--TGGTG----TATATAAAGAGACAA-GGAAAGAAACAAACGTTGATCCCTTTCCCGATCAAAATTTGAATTTCTAAGTCAATAGGCTATCAATTTTAACAAACCCGGTATCATTCTATCACTGAATG---ATC-AA-------TGAAATG-ATCAATC--AGG-AACTAAActg
gi|32610 : GACCTTGGGGA--GTGGA-TAATAATGTTTAATGGGG--GT-GGGCAGGTCCTC--CAGCG----TATATAAAGAGACGA-GGAAAGAAACAAACGTTGACCCCTTCCCCGATCAAAATTAGAATTTCTAAGTCAATAGACCATCAATTTTAACAAACCCGATCTCTTTCTATTGCTGAATG---ATT-TATC----GGCAA--G-ATTG
gi|32611 : GACCTTGGGGT--GTG---TAATAACGTTTAATGGGG--GT-GGGCAGGTCCTC--TGGTG----TATATAAAGAGAC
gi|32612 : AGCGTAGGGA--ATGGA-TAATAACGTTTAAT-GGG-GGT-GGACAGGTCCCC--TTACG----TA
gi|32613 : GCGTAGGGA--GTGGA-TAATAACGTTAAAT--GG-GGT-GGGCAGGTCCCC--TAATG----TA
gi|32614 : TAGGGA--GTGGA-TAATAACGTTAAATGGGG-G-T-GGTCAGGTCCCC--TAACG----TATATATAGAGAC
gi|32615 : TAGGGA--GTGGA-TAATAACGTTTAAT--GG-GGTAGGGCAGGTCCCC--TAGCG----TA
gi|32616 : TAGGGA--GTGGA-TAATAACGTTTAAT--GG-GGT-GGTCAGGTCCCC--TAGCG----TA
gi|32617 : GAGA--CTGGA-TAATAACGTTTAAT-AGG-GGT-TGGCAGGTCCCC--AAGCA----TAT
gi|32618 : GGGG--GGGGG-TAATAACGTTTAACGGGG-GGT-GGCAAGGTCCCT--TAGTG----TA
gi|32619 : GGAGTAATAACGTTTAATGGGG---T-GGGTAGGTCCCC--TAACG----TATATATA
gi|32620 : AAGTCAATAGGCCATCAATTTTAACAAACCCGCTCT
gi|32621 : CCCGGTCTCGTTCTATCGCTGAATG---ATT-TAT
Alignments
lowQualScore : 111 111111 1111 11 3333333333333333333 1 1
lowQualScore : 22 1 7 333 1 22 3333 3 555 3 7777 55 4 66 555 222222 2222 22 5 77 5 5555555555555555555 2 1 0 0 0 1
lowQualScore : .. . . ... . .. .... . ... . .... .. . .. ... ...... .... .. . .. . ................... . . . . . .
lowQualScore : 00 4 2 555 4 00 1111 3 444 3 7777 55 4 99 000 222222 1111 00 0 99 0 6666666666666666666 7 6 2 0 0 0
consensus : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG-GGT-GGGCAGGTCCCC--TAGCG----TATATATAGAGACAA-GGAAAGAAACAAACGTGGACCCCTTCCCCGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-CGAAAAC----GA-CGTTTAAAGGTAAAT--GTTCG----GCGTT------A---ACGGCGTAATTTTTGTCCACCAACATCTGTGGCAACGGAAGTAGCATGTTCGGATATCCTCGGCTTTA-TT-TTTTCAAACTGGCCACGCNCTGAAGCG
Reference ( family-631 ) : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG-GGT-GGGCAGGTCCCC--TAGCG----TATATATAGAGACAA-GGAAAGAAACAAACGTGGACCCCTTCCCCGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-CGAAAAC----GA-CGTTTAAAGGTAAAT--GTTCG----GCGTT------A---ACGGCGTAATTTTTGTCCACCAACATCTGTGGCAACGGAAGTAGCATGTTCGGATATCCTCGGCTTTA-TT-TTTTCAAACTGGCCACGCNCTGAAGCG
gi|32591 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAAAGGGGAGGG-GGGCAGGTCCCC--TAGCG----TATATATAGAGAAAA-GGAAAGAAACAAACGTGGACCCTTTCCCCGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-TAAAAAC----GA-TGTTTAAAGGTAAAT--GTTCG----GCGTT------A---ACAGCATAATTTTTGTCCACCAATATCTGTGGCAACGGAAGTAGCATGTTCGGATATCTTCGGCTTTA-TTGTTTTCAAACTGGCCACGCCCTGAAGCG
gi|32592 : CACAGGAGCTTGGGTA--GTGGA-TAATAACGTTTAATGGGG-A-T-GTGCTGGTCCCC--GAGCG----TATATATAGAGACAA-GGAAAGAAACAAACGTGGACTCCTTCCTCGACCAAAATTAGAGTTTCCAAGTCAATAGGCCATCAATTTTAACACATCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGTAA--CGATGCTTA----TGCATACATTGGC-CGTTTGAAGA-AGAT--G-TCGCACTGTGTTCCCCAAA---ACGGCGTAATTTTTTATCATCAACAGGTCTGGCAACGGA
gi|32593 : CACAGGAGCTTGAGAA--GTGGA-TAATAACGTTTAATGGGG---T-TGGCAGGTCCCC--AAGCG----TATATATAGAGACAA-GGAAAGAAACAAACGTGGACCCCTTCCCCAATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAATCCGGTCTTGTTCTATCGCTGAGTG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGCAAAG-TAAAAAC----GA-TCTTGAAAGGTTAAT--GTTCG----GCGTT------A---ACAGCATACGTTTTGTCCACCAACATCTATGACAACGGAAGTAGCCTGTTCGGATATCATCGGCTTTATTT-TTTTCAAACTGGCCTCGCTCTGAAGCG
gi|32594 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG--GT-GGGCAGGTCCCT--TAGCG----TATATATAGAGACAA-TGAAAGAAACCAACGTAGACATCTTCCCCGATAAAAAATAGAATTTCTAAGTAAATAGGCAATACATTTTAACAAACTCTGTCTCGTTCTATCGCTGAATG---ATT-TATT----TTCAA--T-ATCCTAC--CGATATTTATAT-ATAAGTC----GGCCGTTTGAAGA-AGAT--G-TCGCACTGGGTTCCCCAAA---ACGACGTATTTTTTTATCGTCAACGGGTCTGGCAACGAA
gi|32595 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGTTG-G-T-GGGCAGGTCCCC--TAGCG----TATATATAGAAACAAAGGAAAGAAACAAACGTGGACCCCT----------AACGTGAAGTTTCTAAGTCAATAGGCCATAAATTTTAACAAACCCGGTCTCGTTCTATTGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-CAAAAAC----GA-TGCTTAAAGGTAAAT--ATTTG----GTGCT------A---ACAGCATAATTTTTGTCTACCAACATCTGTGGCAACGGAAGTATCATGTTCGGATATCCTTGGCTTTA-TT-TTTTCAAACTGACCACGCGCTGAAGCG
gi|32596 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG-A-T-GGGCAGGTCCCC--TAGCG----TATACATAGAGACAA-GGACA--AACA--CGTGGACCCCTTCCCAGATCAAAATTAGAGTTTCTAAGTCAATAGGCTATAAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATCGTACCGTTGTTTAT--GCATTCATCAGCGGT---T-----TGAAGAC----GA-----TA---GTGCACTGGTTC--------CT------AAAAACTGCGTCATGTTTGTCTACCAACATCTGTGGCAACGGA
gi|32597 : CACAGGAGCTTGGAGA--GTGGA-TAATAACGTTTAATGGTG-G-T-GGGCAGGTCCCC--TAGCG----TTTAGATAGAGACAA-GGAAAGAAACAAACGTGGACCC-TTCCCCGATCAAAATTAGAGTTTCTAAGTCGATAGGCCATTTATTTTAACAAACCTGGTCTCTTTCTATCGCTCAGTG---ATT-TATC----TTCAA--G-ATCGATC--CGGTTAGTAAAGCCAAAAAC----GA-TGTGAAAAGGTAAAT--ATTCG----GTGTT------A---ACAGCATACATTTTATCGACCAACATCTGTGGCAACGGAAGTAGCATGTTCGGATATCCTCGGCTGTA-TT-TTTTCAAACTGACAACGCGCTGAAACG
gi|32598 : CACAGAAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG--GT-GGGCAGGTCCCC--TAGTG----TATATATAGAGAAAA-GGAAAGAAACAAACGTGGACCCCTTCCCCGATCAAAATTAGAGTTTCTAATTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAAC----ATT-TACT----TT
gi|32599 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGA-G-T-GGGCAGGTCCCC--TAGCG----TATATATAGAGACAA-GGAAAGAAAGAAACGCGGACCTCTTCTCTGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATTAATTTTAACAAACCCGTTCTCGTTCTATCGCTGAATGATAATT-TATA----TTCAA--
gi|32600 : CACAGGAGCTTGGGGACGGTG---TAATAAAGTTTAATGGTG-G-T-GGGCAGGTCCTC--TGGCA----TATATAAAGAGAC
gi|32601 : CACAGGCGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG-A-T-GGCCAGGTCCCCCCTAGCG----TATATATAGAAACAA-AGAAAGAAAC----GCGGACCCCTTCCCCGATCAAAATTAGAGTTTCTGAGCCAATAGGCCATCAATTTTGATAAACCCGGTCTCGTTCTATCGCTGAATG---
gi|32602 : CACAGGAACCTGGGGA--GTGGA-TAATAACGTTTAAT-GGG-GGT-GGGCAGGTCCCC--TAGCG----TATATACAGAGAC
gi|32603 : CACAGGAGCTTGGGGA--GTGGA-TGATAACGTTTAAT--GG-GGT-GGGCAGGTCCCC---AGC------ATATATAGAGAC
gi|32604 : CACAGGAACCTGGGGA--GTGGA-TAATAACGTTTAAT-GGG-GGT-GGGCAGGTCCTC--TGGCG----TACATAAAG
gi|32605 : CACAGGAATTTTGGGA--GTGGA-TAAT------TAATGGGG--GT-GGGCAGGTCCCC--TAGCGTCTCTATATATA
gi|32606 : CACAGGAGCTTGGGGA--GTGGG-TAATAACGTTTGAT-GGG-GGT-GGG--GGTCCTC--TCGCG----TATATAAAG
gi|32607 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAAT-GGG-GGT-GGGCAG--CCCC--
gi|32608 : CATAGGAGCTTTGGGA--GCGGA-TAATTACGTTTAATGGGG-
gi|32609 : ACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTGATGGGG-G-T-GGG--GGTCCTC--TGGTG----TATATAAAGAGACAA-GGAAAGAAACAAACGTTGATCCCTTTCCCGATCAAAATTTGAATTTCTAAGTCAATAGGCTATCAATTTTAACAAACCCGGTATCATTCTATCACTGAATG---ATC-AA-------TGAAATG-ATCAATC--AGG-AACTAAActg
gi|32610 : GACCTTGGGGA--GTGGA-TAATAATGTTTAATGGGG--GT-GGGCAGGTCCTC--CAGCG----TATATAAAGAGACGA-GGAAAGAAACAAACGTTGACCCCTTCCCCGATCAAAATTAGAATTTCTAAGTCAATAGACCATCAATTTTAACAAACCCGATCTCTTTCTATTGCTGAATG---ATT-TATC----GGCAA--G-ATTG
gi|32611 : GACCTTGGGGT--GTG---TAATAACGTTTAATGGGG--GT-GGGCAGGTCCTC--TGGTG----TATATAAAGAGAC
gi|32612 : AGCGTAGGGA--ATGGA-TAATAACGTTTAAT-GGG-GGT-GGACAGGTCCCC--TTACG----TA
gi|32613 : GCGTAGGGA--GTGGA-TAATAACGTTAAAT--GG-GGT-GGGCAGGTCCCC--TAATG----TA
gi|32614 : TAGGGA--GTGGA-TAATAACGTTAAATGGGG-G-T-GGTCAGGTCCCC--TAACG----TATATATAGAGAC
gi|32615 : TAGGGA--GTGGA-TAATAACGTTTAAT--GG-GGTAGGGCAGGTCCCC--TAGCG----TA
gi|32616 : TAGGGA--GTGGA-TAATAACGTTTAAT--GG-GGT-GGTCAGGTCCCC--TAGCG----TA
gi|32617 : GAGA--CTGGA-TAATAACGTTTAAT-AGG-GGT-TGGCAGGTCCCC--AAGCA----TAT
gi|32618 : GGGG--GGGGG-TAATAACGTTTAACGGGG-GGT-GGCAAGGTCCCT--TAGTG----TA
gi|32619 : GGAGTAATAACGTTTAATGGGG---T-GGGTAGGTCCCC--TAACG----TATATATA
gi|32620 : AAGTCAATAGGCCATCAATTTTAACAAACCCGCTCT
gi|32621 : CCCGGTCTCGTTCTATCGCTGAATG---ATT-TAT
blockSeqs : CG G G GG A CC TCTC A ATA G GTTG AT C AG GCT AAGCCA ATTG CC T TG T CACTGTGTTCCCCAAA G A T . T
blockSeqs : . . G GG . . . . . . . . . . AAG AAGTA . C T . T CACTGGGTTCCCCAAA A C . . G
blockSeqs : . . G GG . . . . . . . . . . ATT TATAT . T T . T GCGTTA G T . . G
blockSeqs : . . G GG . . . . . . . . . . AAG AAGCA . T T . T GTGCTA A A
blockSeqs : . . G GG . . . . . . . . . . TAG TG . T . . . CTAAAA T A
blockSeqs : . . G GG . . . . . . . . . . AAC TG . . . . . GTGTTA A C
blockSeqs : . . G GG . . . . . . . . . . .
blockSeqs : . . G GG . . . . . . . . .
blockSeqs : . . G GG . . . . . . . .
blockSeqs : . . G GG . . . . . . .
blockSeqs : . . G GG . . . . . .
blockSeqs : . . G A . . . .
blockSeqs : . . G G . . .
blockSeqs : . . G G . . .
blockSeqs : . . G A . . .
blockSeqs : . . G G . . .
blockSeqs : . . G G . . .
blockSeqs : . . G G . . .
blockSeqs : . . . G . . .
blockSeqs : . . . A . . .
blockSeqs : . . . G . . .
blockSeqs : . . . G . . .
blockSeqs : . . . G . . .
blockSeqs : . . . G . . .
blockSeqs : . . . G . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . .
blockSeqCons : G**
originalCons : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG-GGT-GGGCAGGTCCCC--TAGCG----TATATATAGAGACAA-GGAAAGAAACAAACGTGGACCCCTTCCCCGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-CGAAAAC----GA-CGTTTAAAGGTAAAT--GTTCG----GCGTT------A---ACGGCGTAATTTTTGTCCACCAACATCTGTGGCAACGGAAGTAGCATGTTCGGATATCCTCGGCTTTA-TT-TTTTCAAACTGGCCACGCNCTGAAGCG
finalCons : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGGG--T-GGGCAGGTCCCC--TAGCG----TATATATAGAGACAA-GGAAAGAAACAAACGTGGACCCCTTCCCCGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-CGAAAAC----GA-CGTTTAAAGGTAAAT--GTTCG----GCGTT------A---ACGGCGTAATTTTTGTCCACCAACATCTGTGGCAACGGAAGTAGCATGTTCGGATATCCTCGGCTTTA-TT-TTTTCAAACTGGCCACGCNCTGAAGCG
Alignments
lowQualScore : 111111 1111 11 3333333333333333333 1 1
lowQualScore : 22 1 11 1 22 3333 3 555 3 7777 55 4 66 555 222222 2222 22 5 77 5 5555555555555555555 2 1 0 0 0 1
lowQualScore : .. . .. . .. .... . ... . .... .. . .. ... ...... .... .. . .. . ................... . . . . . .
lowQualScore : 00 4 99 4 00 1111 3 444 3 7777 55 4 99 000 222222 1111 00 0 99 0 6666666666666666666 7 6 2 0 0 0
consensus : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG--GTGGGC-AGGTCCCC--TAGCG----TATATATAGAGACAA-GGAAAGAAACAAACGTGGACCCCTTCCCCGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-CGAAAAC----GA-CGTTTAAAGGTAAAT--GTTCG----GCGTT------A---ACGGCGTAATTTTTGTCCACCAACATCTGTGGCAACGGAAGTAGCATGTTCGGATATCCTCGGCTTTA-TT-TTTTCAAACTGGCCACGCNCTGAAGCG
Reference ( family-631 ) : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG--GTGGGC-AGGTCCCC--TAGCG----TATATATAGAGACAA-GGAAAGAAACAAACGTGGACCCCTTCCCCGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-CGAAAAC----GA-CGTTTAAAGGTAAAT--GTTCG----GCGTT------A---ACGGCGTAATTTTTGTCCACCAACATCTGTGGCAACGGAAGTAGCATGTTCGGATATCCTCGGCTTTA-TT-TTTTCAAACTGGCCACGCNCTGAAGCG
gi|32591 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAAAGGGGAGGGGGGC-AGGTCCCC--TAGCG----TATATATAGAGAAAA-GGAAAGAAACAAACGTGGACCCTTTCCCCGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-TAAAAAC----GA-TGTTTAAAGGTAAAT--GTTCG----GCGTT------A---ACAGCATAATTTTTGTCCACCAATATCTGTGGCAACGGAAGTAGCATGTTCGGATATCTTCGGCTTTA-TTGTTTTCAAACTGGCCACGCCCTGAAGCG
gi|32592 : CACAGGAGCTTGGGTA--GTGGA-TAATAACGTTTAATGGGG--ATGTGC-TGGTCCCC--GAGCG----TATATATAGAGACAA-GGAAAGAAACAAACGTGGACTCCTTCCTCGACCAAAATTAGAGTTTCCAAGTCAATAGGCCATCAATTTTAACACATCCGGTCTCGTTCTATCGCTGAATG---ATT-TATC----TTCAA--G-ATCGTAA--CGATGCTTA----TGCATACATTGGC-CGTTTGAAGA-AGAT--G-TCGCACTGTGTTCCCCAAA---ACGGCGTAATTTTTTATCATCAACAGGTCTGGCAACGGA
gi|32593 : CACAGGAGCTTGAGAA--GTGGA-TAATAACGTTTAATGGGG--TTGG-C-AGGTCCCC--AAGCG----TATATATAGAGACAA-GGAAAGAAACAAACGTGGACCCCTTCCCCAATCAAAATTAGAGTTTCTAAGTCAATAGGCCATCAATTTTAACAAATCCGGTCTTGTTCTATCGCTGAGTG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGCAAAG-TAAAAAC----GA-TCTTGAAAGGTTAAT--GTTCG----GCGTT------A---ACAGCATACGTTTTGTCCACCAACATCTATGACAACGGAAGTAGCCTGTTCGGATATCATCGGCTTTATTT-TTTTCAAACTGGCCTCGCTCTGAAGCG
gi|32594 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG--GTGGGC-AGGTCCCT--TAGCG----TATATATAGAGACAA-TGAAAGAAACCAACGTAGACATCTTCCCCGATAAAAAATAGAATTTCTAAGTAAATAGGCAATACATTTTAACAAACTCTGTCTCGTTCTATCGCTGAATG---ATT-TATT----TTCAA--T-ATCCTAC--CGATATTTATAT-ATAAGTC----GGCCGTTTGAAGA-AGAT--G-TCGCACTGGGTTCCCCAAA---ACGACGTATTTTTTTATCGTCAACGGGTCTGGCAACGAA
gi|32595 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGTTG--GTGGGC-AGGTCCCC--TAGCG----TATATATAGAAACAAAGGAAAGAAACAAACGTGGACCCCT----------AACGTGAAGTTTCTAAGTCAATAGGCCATAAATTTTAACAAACCCGGTCTCGTTCTATTGCTGAATG---ATT-TATC----TTCAA--G-ATCGATC--CGGTAAGTAAAG-CAAAAAC----GA-TGCTTAAAGGTAAAT--ATTTG----GTGCT------A---ACAGCATAATTTTTGTCTACCAACATCTGTGGCAACGGAAGTATCATGTTCGGATATCCTTGGCTTTA-TT-TTTTCAAACTGACCACGCGCTGAAGCG
gi|32596 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG--ATGGGC-AGGTCCCC--TAGCG----TATACATAGAGACAA-GGACA--AACA--CGTGGACCCCTTCCCAGATCAAAATTAGAGTTTCTAAGTCAATAGGCTATAAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAATG---ATCGTACCGTTGTTTAT--GCATTCATCAGCGGT---T-----TGAAGAC----GA-----TA---GTGCACTGGTTC--------CT------AAAAACTGCGTCATGTTTGTCTACCAACATCTGTGGCAACGGA
gi|32597 : CACAGGAGCTTGGAGA--GTGGA-TAATAACGTTTAATGGTG--GTGGGC-AGGTCCCC--TAGCG----TTTAGATAGAGACAA-GGAAAGAAACAAACGTGGA-CCCTTCCCCGATCAAAATTAGAGTTTCTAAGTCGATAGGCCATTTATTTTAACAAACCTGGTCTCTTTCTATCGCTCAGTG---ATT-TATC----TTCAA--G-ATCGATC--CGGTTAGTAAAGCCAAAAAC----GA-TGTGAAAAGGTAAAT--ATTCG----GTGTT------A---ACAGCATACATTTTATCGACCAACATCTGTGGCAACGGAAGTAGCATGTTCGGATATCCTCGGCTGTA-TT-TTTTCAAACTGACAACGCGCTGAAACG
gi|32598 : CACAGAAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG--GTGGGC-AGGTCCCC--TAGTG----TATATATAGAGAAAA-GGAAAGAAACAAACGTGGACCCCTTCCCCGATCAAAATTAGAGTTTCTAATTCAATAGGCCATCAATTTTAACAAACCCGGTCTCGTTCTATCGCTGAAC----ATT-TACT----TT
gi|32599 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGA--GTGGGC-AGGTCCCC--TAGCG----TATATATAGAGACAA-GGAAAGAAAGAAACGCGGACCTCTTCTCTGATCAAAATTAGAGTTTCTAAGTCAATAGGCCATTAATTTTAACAAACCCGTTCTCGTTCTATCGCTGAATGATAATT-TATA----TTCAA--
gi|32600 : CACAGGAGCTTGGGGACGGTG---TAATAAAGTTTAATGGTG--GTGGGC-AGGTCCTC--TGGCA----TATATAAAGAGAC
gi|32601 : CACAGGCGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG--ATGGCC-AGGTCCCCCCTAGCG----TATATATAGAAACAA-AGAAAGAAAC----GCGGACCCCTTCCCCGATCAAAATTAGAGTTTCTGAGCCAATAGGCCATCAATTTTGATAAACCCGGTCTCGTTCTATCGCTGAATG---
gi|32602 : CACAGGAACCTGGGGA--GTGGA-TAATAACGTTTAATGGGG--GTGGGC-AGGTCCCC--TAGCG----TATATACAGAGAC
gi|32603 : CACAGGAGCTTGGGGA--GTGGA-TGATAACGTTTAAT-GGG--GTGGGC-AGGTCCCC---AGC------ATATATAGAGAC
gi|32604 : CACAGGAACCTGGGGA--GTGGA-TAATAACGTTTAATGGGG--GTGGGC-AGGTCCTC--TGGCG----TACATAAAG
gi|32605 : CACAGGAATTTTGGGA--GTGGA-TAAT------TAATGGGG--GTGGGC-AGGTCCCC--TAGCGTCTCTATATATA
gi|32606 : CACAGGAGCTTGGGGA--GTGGG-TAATAACGTTTGATGGGG--GTGGG---GGTCCTC--TCGCG----TATATAAAG
gi|32607 : CACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTAATGGGG--GTGGGC-AG--CCCC--
gi|32608 : CATAGGAGCTTTGGGA--GCGGA-TAATTACGTTTAATGGGG--CTG
gi|32609 : ACAGGAGCTTGGGGA--GTGGA-TAATAACGTTTGATGGGG--GTGGG---GGTCCTC--TGGTG----TATATAAAGAGACAA-GGAAAGAAACAAACGTTGATCCCTTTCCCGATCAAAATTTGAATTTCTAAGTCAATAGGCTATCAATTTTAACAAACCCGGTATCATTCTATCACTGAATG---ATC-AA-------TGAAATG-ATCAATC--AGG-AACTAAA
gi|32610 : GACCTTGGGGA--GTGGA-TAATAATGTTTAATGGGG--GTGGGC-AGGTCCTC--CAGCG----TATATAAAGAGACGA-GGAAAGAAACAAACGTTGACCCCTTCCCCGATCAAAATTAGAATTTCTAAGTCAATAGACCATCAATTTTAACAAACCCGATCTCTTTCTATTGCTGAATG---ATT-TATC----GGCAA--G-ATTG
gi|32611 : GACCTTGGGGT--GTG---TAATAACGTTTAATGGGG--GTGGGC-AGGTCCTC--TGGTG----TATATAAAGAGAC
gi|32612 : AGCGTAGGGA--ATGGA-TAATAACGTTTAATGGGG--GTGGAC-AGGTCCCC--TTACG----TA
gi|32613 : GCGTAGGGA--GTGGA-TAATAACGTTAAAT-GGG--GTGGGC-AGGTCCCC--TAATG----TA
gi|32614 : TAGGGA--GTGGA-TAATAACGTTAAATGGGG--GTGGTC-AGGTCCCC--TAACG----TATATATAGAGAC
gi|32615 : TAGGGA--GTGGA-TAATAACGTTTAATGGGG--TAGGGC-AGGTCCCC--TAGCG----TA
gi|32616 : TAGGGA--GTGGA-TAATAACGTTTAAT-GGG--GTGGTC-AGGTCCCC--TAGCG----TA
gi|32617 : GAGA--CTGGA-TAATAACGTTTAATAGGG--GTTGGC-AGGTCCCC--AAGCA----TAT
gi|32618 : GGGG--GGGGG-TAATAACGTTTAACGGGG--GGTGGCAAGGTCCCT--TAGTG----TA
gi|32619 : GGAGTAATAACGTTTAATGGGG---TGGGT-AGGTCCCC--TAACG----TATATATA
gi|32620 : AAGTCAATAGGCCATCAATTTTAACAAACCCGCTCT
gi|32621 : CCCGGTCTCGTTCTATCGCTGAATG---ATT-TAT