lowQualScore : 1 111111111111111 1 11 1111
lowQualScore : 1 3 3 1 999999999999999 1 1 333 4 222 1 5 888888 333 22 44 5 2 66666 0 77 7777 3 6
lowQualScore : . . . . ............... . . ... . ... . . ...... ... .. .. . . ..... . .. .... . .
lowQualScore : 3 8 8 2 555555555555555 9 2 777 9 222 2 9 222222 000 99 00 2 2 22222 2 44 0000 5 2
consensus : TACA-GTCGAAACTCGT-TATTTCGA-A-TT----CC--G-T----GGGACCG-T--AAAAATAATT---CGAAATATC-CGAANTTC------GATT---TA--TCAGGAGTCTATCTTTGTNCAACTTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGT---TGTACATGTAAATACCTNTATTTG-TTGTTTTTT
Reference ( gi|7457 ) : TACA-GTCGAAACTCGT-TATTTCGA-A-TT----CC--G-T----GGGCCCG-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCAGGAGTCTATTTTTGTTCAACTTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGT---TGTACATATAAATACCTCTATTTG-TTGTTTTTT
gi|7459 : TACA-GTCGAAACTCGT-TATTTCGA-A-TT----CC--T-T----GGGACCG-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCAGGAGTTTATTTTTGTTCAACATTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGT---TGTACATATAAATACCTCTATTTGTTTGTGTTT
gi|7458 : TACA-GTCGAAACTCGT-TATTTCGA-A-TT----CC--G-T----GGGACCG-T--AAAAAGAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCAGGAGTCTATGTTTGTTAAAGTTTTTACCGTTACTCCACCCACTTCA-----TAAATCGTTGAAAATATACATGT---TGTACATATAAATACCTCTATTTG-TTGTTGTTT
gi|7460 : TACA-GTCGAAACTCGT-TATTTCGA-A-TT----CC--G-T----GGGACCG-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCCGGAGTGTATTTTTGTTCAAATCTTTACCGTTACCCCACCCACTTCA-----CAAATCGTTGAAAATATACACAT---TGTACATATAAATACCTCTATTTGTTTGTTGTT
gi|7462 : TACA-GTAGAAACTCGT-TATTTCGA-A-TT----CC--G-T----GGGACCG-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TAAGTAGTCTATCTTTG-TGAAATTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGT---TGTACATGTAAATACCTCTATTAG-TTGTTTTTT
gi|7463 : TACA-GTTGAAACTCGT-TATTTCAA-A-TT----CC--G-T----GGGACCT-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCAGGAGTCTTTTTTTGTTCAAATTTTTCCCGTTACACCACCCACTTCA-----TAAATTGTTGAAAATATACATGT---TGTACATATAAATACCTCTATTTG---GTTTTTT
gi|7461 : TACA-GTCAAAACTCGT-TATTTCGA-A-TT----CC--G-T----GGGACCT-T--AAGA-TAATA---CGAAATATC-CGAAGTTT------GATT---TA--TCAGGAGTCTATGTTTGTTCAACTTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGT---TGTACCTATAAATACCTCTATTTG-TTTTTGTTT
gi|7464 : TACA-GTCGAAACTCGT-TATTTCGA-A-CT----CT--G-T----GGGACCG-T--AGAAATAATT---CGAAATATC-CGGACTTT------GATT---TA--TCAGGAGTCTACCTTTGTGCATTTTTTCACCGTTACCCCACCCACTTCA-----TAAATCATTGAAAATAT--ATG----TGTACATGTAAATACCTATATTTG-TTGTTTTTT
gi|7465 : TACA-GTCGAAACTCGT-TATTTCGA-A-TT----CC--A-T----GGGACCG-T--AAAAATAATT---CGAAATATC-CGGACTTC------GATT---TA--TCAGGAGTCTACCTTTGTGCATCTTTTCACCGTTACCCCACCCACTTCA-----TAAATCTATGAAAATAT--ATG----TGTACATGTAAATACTGATATTTG-TGGTTTTTT
gi|7466 : TACA-GTCAAAACTCAT-TATTTCGA-A-TT----CC--G-T----GAGACCG-T--AAAAATAATC---CGAAATATC-CGGACTTC------TTTT---TA--TCAGAAGTTTACCTTTGTGCATCTTTTTACCGCTACCCCACCCACTTCA-----TAAATCATT-AAAATAT--ATG----TGTACAT
gi|7468 : TACA-GTCCAAACTCGT-TTACTCGA-A-AT----CC--T-T----GGGACCA-T--AAAAATAATT---CGGAATATC-CGGAATTC------GATT---TA--TCAGGAGTCGAATTTTGGGCGACTTTTTGTCGTTTCCCCATCCACTTC
gi|7469 : TACA-GTCGAAACTAAC-TAACTCGA-A-TT----CC--T-T----TGTACCA-T--AAAAATAACT---CGAAATATC-CGGAATTC------GATG---TA--TCCGGAATCGAACTGTTTCCAACTTTTTACTGTTACCACACCCGCTTCT-----TATAT
gi|7470 : TACA-ATCGAAACTCGT-TATTTCGA-A-TT----CC--G-T----GGGACCG-T--AAAAATAATT---CGAAAT-----GAAGTTG------GATT---aatgtagt
gi|7471 : TACA-GTCGAAACTCGT-TATCTCGATA-TT--------GAT----GGGACTGCC--AAAAATAACT---CGAGATATC-CGAATATC------GA
gi|7472 : TACA-GTCGAAACTCGT-TATCTCGATA-TT-----T--G-A----GGGACAG-C--CAAAAAAACT---CGAGATATC-CGAAAATC------GA
gi|7473 : TACAAGTCTAAACTTAT-TATTTCAA-A-TT----CCAAG------GGGCCAG-T----AAATGATT---CCACATATCAGGAAGT-----------------------GAGC---TTTGTGT---ATTTTTTGCAGTTACCACACACACTTGA-----TTAATAATTG
gi|7474 : TACA-GTTGAAACTCGT-TATTCCGA-A-CA----AC--A-T----GGTACCA-A--CAAAACAATTAGACGACATATT-AGGAATTC------GACA---TA--TCAGAAAT
gi|7475 : TACA-GTCGAAACTCAT-TCTCTCGA-T-AT----CG--G-A----GGGACTG-C--CAAAACAACT---CGAGATATC-CGAATATCGGCATAGATT---TGTCTCAAGA-TCAATATTTATT
gi|7476 : TACA-GTCGAAACTCGT-TATATCGATA-TT-----T--G-A----GGGACTG-C--CAAAAAAACT---CCAGATATC-CGA
gi|7467 : TACA-GTCAAAACTCGT-TATCTCGATA-TT-----A--G-A----GGGACTG-C--CAAAAAAACT---CAATATATC-CGAATATC------GA
gi|7477 : TACA-GTCGAAACCTGT-TATTTTGATA-TT-----G--G-A----GGGACTG-CCAAAAAAAAACT---CGAGATATC-CGAA
gi|7478 : TACA-GTCGAAACTCGT-GATCTCGATA-TT-----G--G-A----GGGACTG-C--CAAAAAAAAT---CGAGATATC-CAAATATC------GA
gi|7479 : TACA-GTCGAAACTCAT-TATCTCGATA-TT-----G--G-A----GGGACTG-C--CAAAA-ACCT---CGAGATATC-CGAA
gi|7480 : TACA-GTCGAAACTAGT-TGTCTCGATA-TT-----A--G-A----GGGAATG-T--AAAAA-A--T---CGAAATATT-CGAATATC------GA
gi|7481 : TACA-GTCGAAACTAGT-TCTCTCGATA-TT-----A--G-A----GGGAATG-T--AAAAA-AA-T---CGAAATATT-CGAA
gi|7482 : TACA-GTCCAAACTTGT-TATCTCGATA-TT----G---G-A----GGGACTG-CCAAAAAACA--T---TGAAATATC-CGAACATCAACATAGATTTTGTC--TCAAGA-TCAATTTTTATT
gi|7483 : CA-GTCGAAACTCGT-TATCTCGATA-TT--------G-A----GGGACTG-C--CAAAAAAACT---CGTGATATC-CGA
gi|7459 : A-ATCGAACTTCGGATATTTCGA-A-TTATTTTT--A-C----GGTCCC-------AAGGAATT---CGAAATA-A-CGAGTTTC------GACT---
gi|7458 : tacA-ATCGAACTTCGGATATTTCGA-A-TT----CT--T-TTTACGGTCCCA-C--GG----AATT---CGAAATA-A-CGAGTTTC------GACT---tatcaggagtttatttttgttcaacattttaccgttaccccacccacttcataaatcgttgaaaatatacatgttgtacatataaatacctctatttgtttgtgttt
gi|7465 : tacA-ATCGAAGTCCGGATATTTCGA-A-TTATTTTT--A-C----GGTCCCA-T--GGAA----TT---CGAAATA-A-CGAGTTTC------GACT---tatcaggagtctatgtttgttaaagtttttaccgttactccacccacttcataaatcgttgaaaatatacatgttgtacatataaatacctctatttgttgttgttt
gi|7484 : tacA-GTTGAAACTTGT-TATTTCTA-A-TT----CC--T-T----GGGACCA-T--AAAAATAATT---TGAAATATC-CTGAATTT------GATG---TA--TCAGGAATCAAATTTTGAGCATCTTTTTACTGTTAGCCTTCCCG-TTCATTACTTATATCATTGAAAATG-A-ATAT---T-TACTTGCAAATACCTGTATTTG-TTGTTtatcaggagtctacctttgtgcatcttttcaccgttaccccacccacttcataaatctatgaaaatatatgtgtacatgtaaatactgatatttgtggtttttt
gi|7485 : -GTCGAAACTTGT-TATTTCGA-AATT----CC--A-T----GGGACTG-T--AAAAATAATT---CGAAATATC-CGGACTTC------GATT---TA--TCAGGAGTCTACCTTTGTGCATCTTTTCACCGTTACCCCACCCACTCCA-----TAAATCATTGAAAATAT--ATG----TGTACATGTAAATACCTATATTTG-TTGTTTTTT
gi|7486 : TCGT-TATTTCGA-A-TT----CC--G-T----GGGACCG-T--AAAAATAATT---CGAAATATA-CTGACTTC------GATT---TA--TCAGGAGTCTAC----------CTTTTCACCGTTACCGTAACCACTTCA-----TAAATCATTGAAAATAT--ATG----TGTACATGTAAACACCTATATTTG-TTGTTTTTT
gi|7487 : TTC------GATT---TA--TCAGGAGTCTACCTTTGTGCTTCTTTTCACTGTTACCCCACCCACTTCA-----TAAATCATTGAAAATAT--ATG----TATACATGTAAATACCTATATTTG-TTGTTTTTT
gi|7488 : TTTCACCATTACCCCACCCACTTCA-----TAAATCATTGAAAATATATGTGTACATGTAAATACATATACATGTATTTG-TTGTTTTTT
Alignments
lowQualScore : 1 11 1
lowQualScore : 1 4 1 99 22 1 1 33 3 222 1 1 888888 333 22 33 1 1 55555 88 3 77777 2 1 5
lowQualScore : . . . .. .. . . .. . ... . . ...... ... .. .. . . ..... .. . ..... . . .
lowQualScore : 4 7 3 11 77 3 3 77 4 333 3 0 888888 333 88 66 8 6 99999 99 9 11111 9 0 7
consensus : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGAANTTC------GATT---TA--TCAGGAGTCTATCTTTGTGCAACTTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATGTAAATAC-----C-TNTATTTG-TTGTTTTTT
Reference ( family-626 ) : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGAANTTC------GATT---TA--TCAGGAGTCTATCTTTGTNCAACTTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATGTAAATAC-----C-TNTATTTG-TTGTTTTTT
gi|7457 : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCG-TGGGCCC-G-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCAGGAGTCTATTTTTGTTCAACTTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATATAAATAC-----C-TCTATTTG-TTGTTTTTT
gi|7458 : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAAGAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCAGGAGTCTATGTTTGTTAAAGTTTTTACCGTTACTCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATATAAATAC-----C-TCTATTTG-TTGTTGTTT
gi|7459 : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCT-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCAGGAGTTTATTTTTGTTCAACATTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATATAAATAC-----C-TCTATTTGTTTGTGTTT
gi|7460 : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCCGGAGTGTATTTTTGTTCAAATCTTTACCGTTACCCCACCCACTTCA-----CAAATCGTTGAAAATATACACATTGTACATATAAATAC-----C-TCTATTTGTTTGTTGTT
gi|7461 : TACA-GTCAAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-T-T--AAGA-TAATA---CGAAATATC-CGAAGTTT------GATT---TA--TCAGGAGTCTATGTTTGTTCAACTTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACCTATAAATAC-----C-TCTATTTG-TTTTTGTTT
gi|7462 : TACA-GTAGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TAAGTAGTCTATCTTTGTG-AAATTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATGTAAATAC-----C-TCTATTAG-TTGTTTTTT
gi|7463 : TACA-GTTGAAACTCGTTATTTCAA-A-TTCCG-TGGGACC-T-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCAGGAGTCTTTTTTTGTTCAAATTTTTCCCGTTACACCACCCACTTCA-----TAAATTGTTGAAAATATACATGTTGTACATATAAATAC-----C-TCTATTTG---GTTTTTT
gi|7464 : TACA-GTCGAAACTCGTTATTTCGA-A-CTCTG-TGGGACC-G-T--AGAAATAATT---CGAAATATC-CGGACTTT------GATT---TA--TCAGGAGTCTACCTTTGTGCATTTTTTCACCGTTACCCCACCCACTTCA-----TAAATCATTGAAAATAT--ATG-TGTACATGTAAATAC-----C-TATATTTG-TTGTTTTTT
gi|7465 : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCA-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGGACTTC------GATT---TA--TCAGGAGTCTACCTTTGTGCATCTTTTCACCGTTACCCCACCCACTTCA-----TAAATCTATGAAAATAT--ATG-TGTACATGTAAATAC-----T-GATATTTG-TGGTTTTTT
gi|7466 : TACA-GTCAAAACTCATTATTTCGA-A-TTCCG-TGAGACC-G-T--AAAAATAATC---CGAAATATC-CGGACTTC------TTTT---TA--TCAGAAGTTTACCTTTGTGCATCTTTTTACCGCTACCCCACCCACTTCA-----TAAATCATT-AAAATAT--ATG-TGTACAT
gi|7467 : TACA-GTCAAAACTCGTTATCTCGATA-TT-AG-AGGGACT-G-C--CAAAAAAACT---CAATATATC-CGAATATC------GA
gi|7468 : TACA-GTCCAAACTCGTTTACTCGA-A-ATCCT-TGGGACC-A-T--AAAAATAATT---CGGAATATC-CGGAATTC------GATT---TA--TCAGGAGTCGAATTTTGGGCGACTTTTTGTCGTTTCCCCATCCACTTC
gi|7469 : TACA-GTCGAAACTAACTAACTCGA-A-TTCCT-TTGTACC-A-T--AAAAATAACT---CGAAATATC-CGGAATTC------GATG---TA--TCCGGAATCGAACTGTTTCCAACTTTTTACTGTTACCACACCCGCTTCT-----TATAT
gi|7470 : TACA-ATCGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAAT-----GAAGTTG------GATT---aatgtagt
gi|7471 : TACA-GTCGAAACTCGTTATCTCGATA-TT--GATGGGACT-GCC--AAAAATAACT---CGAGATATC-CGAATATC------GA
gi|7472 : TACA-GTCGAAACTCGTTATCTCGATA-TT-TG-AGGGACA-G-C--CAAAAAAACT---CGAGATATC-CGAAAATC------GA
gi|7473 : TACAAGTCTAAACTTATTATTTCAA-A-TTCCA-AGGGGCCAG-T----AAATGATT---CCACATATCAGGAAGT-----------------------GAG-----CTTTGTGT-ATTTTTTGCAGTTACCACACACACTTGA-----TTAATAATTG
gi|7474 : TACA-GTTGAAACTCGTTATTCCGA-A-CAACA-TGGTACC-A-A--CAAAACAATTAGACGACATATT-AGGAATTC------GACA---TA--TCAGAAAT
gi|7475 : TACA-GTCGAAACTCATTCTCTCGA-T-ATCGG-AGGGACT-G-C--CAAAACAACT---CGAGATATC-CGAATATCGGCATAGATT---TGTCTCAAGA-TCAATATTTAT
gi|7476 : TACA-GTCGAAACTCGTTATATCGATA-TT-TG-AGGGACT-G-C--CAAAAAAACT---CCAGATATC-CGAt
gi|7477 : TACA-GTCGAAACCTGTTATTTTGATA-TT-GG-AGGGACT-G-CCAAAAAAAAACT---CGAGATATC-CGAA
gi|7478 : TACA-GTCGAAACTCGTGATCTCGATA-TT-GG-AGGGACT-G-C--CAAAAAAAAT---CGAGATATC-CAAATATC------GA
gi|7479 : TACA-GTCGAAACTCATTATCTCGATA-TT-GG-AGGGACT-G-C--CAAAA-ACCT---CGAGATATC-CGAA
gi|7480 : TACA-GTCGAAACTAGTTGTCTCGATA-TT-AG-AGGGAAT-G-T--AAAAA-A--T---CGAAATATT-CGAATATC------GA
gi|7481 : TACA-GTCGAAACTAGTTCTCTCGATA-TT-AG-AGGGAAT-G-T--AAAAA-AA-T---CGAAATATT-CGAA
gi|7482 : TACA-GTCCAAACTTGTTATCTCGATA-TTG-G-AGGGACT-G-CCAAAAAACA--T---TGAAATATC-CGAACATCAACATAGATTTTGTC--TCAAGA-TCAATTTTTAT
gi|7483 : CA-GTCGAAACTCGTTATCTCGATA-TT--G-AGGGACT-G-C--CAAAAAAACT---CGTGATATC-CGAt
gi|7484 : A-GTTGAAACTTGTTATTTCTA-A-TTCCT-TGGGACC-A-T--AAAAATAATT---TGAAATATC-CTGAATTT------GATG---TA--TCAGGAATCAAATTTTGAGCATCTTTTTACTGTTAGCCTTCCCG-TTCATTACTTATATCATTGAAAATG-A-ATATT-TACTTGCAAATAC-----C-TGTATTTG-TTGTT
gi|7485 : -GTCGAAACTTGTTATTTCGA-AATTCCA-TGGGACT-G-T--AAAAATAATT---CGAAATATC-CGGACTTC------GATT---TA--TCAGGAGTCTACCTTTGTGCATCTTTTCACCGTTACCCCACCCACTCCA-----TAAATCATTGAAAATAT--ATG-TGTACATGTAAATAC-----C-TATATTTG-TTGTTTTTT
gi|7486 : TCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAATATA-CTGACTTC------GATT---TA--TCAGGAGTCTAC----------CTTTTCACCGTTACCGTAACCACTTCA-----TAAATCATTGAAAATAT--ATG-TGTACATGTAAACAC-----C-TATATTTG-TTGTTTTTT
gi|7487 : TTC------GATT---TA--TCAGGAGTCTACCTTTGTGCTTCTTTTCACTGTTACCCCACCCACTTCA-----TAAATCATTGAAAATAT--ATG-TATACATGTAAATAC-----C-TATATTTG-TTGTTTTTT
gi|7488 : TTTCACCATTACCCCACCCACTTCA-----TAAATCATTGAAAATAT--ATG-TGTACATGTAAATACATATACATGTATTTG-TTGTTTTTT
Alignments
lowQualScore : 1 11 1
lowQualScore : 1 4 1 99 22 1 1 33 3 222 1 1 888888 333 22 33 1 1 55555 88 3 77777 2 1 5
lowQualScore : . . . .. .. . . .. . ... . . ...... ... .. .. . . ..... .. . ..... . . .
lowQualScore : 4 7 3 11 77 3 3 77 4 333 3 0 888888 333 88 66 8 6 99999 99 9 11111 9 0 7
consensus : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGAANTTC------GATT---TA--TCAGGAGTCTATCTTTGTGCAACTTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATGTAAATAC-----C-TNTATTTG-TTGTTTTTT
Reference ( family-626 ) : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGAANTTC------GATT---TA--TCAGGAGTCTATCTTTGTGCAACTTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATGTAAATAC-----C-TNTATTTG-TTGTTTTTT
gi|7457 : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCG-TGGGCCC-G-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCAGGAGTCTATTTTTGTTCAACTTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATATAAATAC-----C-TCTATTTG-TTGTTTTTT
gi|7458 : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAAGAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCAGGAGTCTATGTTTGTTAAAGTTTTTACCGTTACTCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATATAAATAC-----C-TCTATTTG-TTGTTGTTT
gi|7459 : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCT-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCAGGAGTTTATTTTTGTTCAACATTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATATAAATAC-----C-TCTATTTGTTTGTGTTT
gi|7460 : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCCGGAGTGTATTTTTGTTCAAATCTTTACCGTTACCCCACCCACTTCA-----CAAATCGTTGAAAATATACACATTGTACATATAAATAC-----C-TCTATTTGTTTGTTGTT
gi|7461 : TACA-GTCAAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-T-T--AAGA-TAATA---CGAAATATC-CGAAGTTT------GATT---TA--TCAGGAGTCTATGTTTGTTCAACTTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACCTATAAATAC-----C-TCTATTTG-TTTTTGTTT
gi|7462 : TACA-GTAGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TAAGTAGTCTATCTTTGTG-AAATTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATGTAAATAC-----C-TCTATTAG-TTGTTTTTT
gi|7463 : TACA-GTTGAAACTCGTTATTTCAA-A-TTCCG-TGGGACC-T-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCAGGAGTCTTTTTTTGTTCAAATTTTTCCCGTTACACCACCCACTTCA-----TAAATTGTTGAAAATATACATGTTGTACATATAAATAC-----C-TCTATTTG---GTTTTTT
gi|7464 : TACA-GTCGAAACTCGTTATTTCGA-A-CTCTG-TGGGACC-G-T--AGAAATAATT---CGAAATATC-CGGACTTT------GATT---TA--TCAGGAGTCTACCTTTGTGCATTTTTTCACCGTTACCCCACCCACTTCA-----TAAATCATTGAAAATAT--ATG-TGTACATGTAAATAC-----C-TATATTTG-TTGTTTTTT
gi|7465 : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCA-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGGACTTC------GATT---TA--TCAGGAGTCTACCTTTGTGCATCTTTTCACCGTTACCCCACCCACTTCA-----TAAATCTATGAAAATAT--ATG-TGTACATGTAAATAC-----T-GATATTTG-TGGTTTTTT
gi|7466 : TACA-GTCAAAACTCATTATTTCGA-A-TTCCG-TGAGACC-G-T--AAAAATAATC---CGAAATATC-CGGACTTC------TTTT---TA--TCAGAAGTTTACCTTTGTGCATCTTTTTACCGCTACCCCACCCACTTCA-----TAAATCATT-AAAATAT--ATG-TGTACAT
gi|7467 : TACA-GTCAAAACTCGTTATCTCGATA-TT-AG-AGGGACT-G-C--CAAAAAAACT---CAATATATC-CGAATATC------GA
gi|7468 : TACA-GTCCAAACTCGTTTACTCGA-A-ATCCT-TGGGACC-A-T--AAAAATAATT---CGGAATATC-CGGAATTC------GATT---TA--TCAGGAGTCGAATTTTGGGCGACTTTTTGTCGTTTCCCCATCCACTTC
gi|7469 : TACA-GTCGAAACTAACTAACTCGA-A-TTCCT-TTGTACC-A-T--AAAAATAACT---CGAAATATC-CGGAATTC------GATG---TA--TCCGGAATCGAACTGTTTCCAACTTTTTACTGTTACCACACCCGCTTCT-----TATAT
gi|7470 : TACA-ATCGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAAT-----GAAGTTG------GATT---aatgtagt
gi|7471 : TACA-GTCGAAACTCGTTATCTCGATA-TT--GATGGGACT-GCC--AAAAATAACT---CGAGATATC-CGAATATC------GA
gi|7472 : TACA-GTCGAAACTCGTTATCTCGATA-TT-TG-AGGGACA-G-C--CAAAAAAACT---CGAGATATC-CGAAAATC------GA
gi|7473 : TACAAGTCTAAACTTATTATTTCAA-A-TTCCA-AGGGGCCAG-T----AAATGATT---CCACATATCAGGAAGT-----------------------GAG-----CTTTGTGT-ATTTTTTGCAGTTACCACACACACTTGA-----TTAATAATTG
gi|7474 : TACA-GTTGAAACTCGTTATTCCGA-A-CAACA-TGGTACC-A-A--CAAAACAATTAGACGACATATT-AGGAATTC------GACA---TA--TCAGAAAT
gi|7475 : TACA-GTCGAAACTCATTCTCTCGA-T-ATCGG-AGGGACT-G-C--CAAAACAACT---CGAGATATC-CGAATATCGGCATAGATT---TGTCTCAAGA-TCAATATTTAT
gi|7476 : TACA-GTCGAAACTCGTTATATCGATA-TT-TG-AGGGACT-G-C--CAAAAAAACT---CCAGATATC-CGAt
gi|7477 : TACA-GTCGAAACCTGTTATTTTGATA-TT-GG-AGGGACT-G-CCAAAAAAAAACT---CGAGATATC-CGAA
gi|7478 : TACA-GTCGAAACTCGTGATCTCGATA-TT-GG-AGGGACT-G-C--CAAAAAAAAT---CGAGATATC-CAAATATC------GA
gi|7479 : TACA-GTCGAAACTCATTATCTCGATA-TT-GG-AGGGACT-G-C--CAAAA-ACCT---CGAGATATC-CGAA
gi|7480 : TACA-GTCGAAACTAGTTGTCTCGATA-TT-AG-AGGGAAT-G-T--AAAAA-A--T---CGAAATATT-CGAATATC------GA
gi|7481 : TACA-GTCGAAACTAGTTCTCTCGATA-TT-AG-AGGGAAT-G-T--AAAAA-AA-T---CGAAATATT-CGAA
gi|7482 : TACA-GTCCAAACTTGTTATCTCGATA-TTG-G-AGGGACT-G-CCAAAAAACA--T---TGAAATATC-CGAACATCAACATAGATTTTGTC--TCAAGA-TCAATTTTTAT
gi|7483 : CA-GTCGAAACTCGTTATCTCGATA-TT--G-AGGGACT-G-C--CAAAAAAACT---CGTGATATC-CGAt
gi|7484 : A-GTTGAAACTTGTTATTTCTA-A-TTCCT-TGGGACC-A-T--AAAAATAATT---TGAAATATC-CTGAATTT------GATG---TA--TCAGGAATCAAATTTTGAGCATCTTTTTACTGTTAGCCTTCCCG-TTCATTACTTATATCATTGAAAATG-A-ATATT-TACTTGCAAATAC-----C-TGTATTTG-TTGTT
gi|7485 : -GTCGAAACTTGTTATTTCGA-AATTCCA-TGGGACT-G-T--AAAAATAATT---CGAAATATC-CGGACTTC------GATT---TA--TCAGGAGTCTACCTTTGTGCATCTTTTCACCGTTACCCCACCCACTCCA-----TAAATCATTGAAAATAT--ATG-TGTACATGTAAATAC-----C-TATATTTG-TTGTTTTTT
gi|7486 : TCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAATATA-CTGACTTC------GATT---TA--TCAGGAGTCTAC----------CTTTTCACCGTTACCGTAACCACTTCA-----TAAATCATTGAAAATAT--ATG-TGTACATGTAAACAC-----C-TATATTTG-TTGTTTTTT
gi|7487 : TTC------GATT---TA--TCAGGAGTCTACCTTTGTGCTTCTTTTCACTGTTACCCCACCCACTTCA-----TAAATCATTGAAAATAT--ATG-TATACATGTAAATAC-----C-TATATTTG-TTGTTTTTT
gi|7488 : TTTCACCATTACCCCACCCACTTCA-----TAAATCATTGAAAATAT--ATG-TGTACATGTAAATACATATACATGTATTTG-TTGTTTTTT
blockSeqs : A T A CC AT A C CA G AGA A G GGCATA TTG TC TG T A TTACT AC T ATATA A C T
blockSeqs : . T . CC T . . CA T . . G AACATA . . TT T A . AC T . . C T
blockSeqs : . T . CC T . . . T . . G . . . TT T A . AC T . . C .
blockSeqs : . T . CC T . . . T . . G . . . TG T A . AC T . . C .
blockSeqs : . T . CC T . . . T . . G . . . TC G A . AC T . . C .
blockSeqs : . T . CC T . . . T . . G . . . TT T A . AC T . . C .
blockSeqs : . T . CT T . . . T . . C . . . CC G T . A T . . A .
blockSeqs : . T . CC T . . . T . . C . . . CC G T . . . . . A .
blockSeqs : . T . CC T . . . T . . C . . . CC G T . . . . . G .
blockSeqs : . T . CC T . . . A . . T . . . AT G A . . . . . A .
blockSeqs : . T . CC A . . . T . . A . . . AC C A . . . . . A .
blockSeqs : . . . CC T . . . T . . A . . . TA G A . . . . . A .
blockSeqs : . . . CC T . . . T . . G . . . TT G T . . . . . G .
blockSeqs : . . . AC T . . . T . . T . . . AT G T . . .
blockSeqs : . . . CG A . . . A . . A . . . CC G T .
blockSeqs : . . . CC A . . . T . . G . . . CC . . .
blockSeqs : . . . CC T . . . C . . A . . . C
blockSeqs : . . . CC A . . . C . . T . . . C
blockSeqs : . . . A A . . . A . . T . . .
blockSeqs : . . . T A . . . A . . T . .
blockSeqs : . . . T A . . . A . . C .
blockSeqs : . . . G A . . . C . . A .
blockSeqs : . . . G A . . . A . . C .
blockSeqs : . . . G A . . . T . . C .
blockSeqs : . . . A A . . . T . . .
blockSeqs : . . . A A . . . T . .
blockSeqs : . . . G T . . . . . .
blockSeqs : . . . . T . . . . . .
blockSeqs : . . . T . . . . . .
blockSeqCons : AC
originalCons : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGAANTTC------GATT---TA--TCAGGAGTCTATCTTTGTGCAACTTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATGTAAATAC-----C-TNTATTTG-TTGTTTTTT
finalCons : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGAANTTC------GATT---TA--TCAGGAGTCTATCTTTGTGCAACTTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATGTAAATAC-----C-TNTATTTG-TTGTTTTTT
Alignments
lowQualScore : 1 11 1
lowQualScore : 1 4 1 99 22 1 1 33 3 222 1 1 888888 333 22 33 1 1 55555 88 3 77777 2 1 5
lowQualScore : . . . .. .. . . .. . ... . . ...... ... .. .. . . ..... .. . ..... . . .
lowQualScore : 4 7 3 11 77 3 3 77 4 333 3 0 888888 333 88 66 8 6 99999 99 9 11111 9 0 7
consensus : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGAANTTC------GATT---TA--TCAGGAGTCTATCTTTGTGCAACTTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATGTAAATAC-----C-TNTATTTG-TTGTTTTTT
Reference ( family-626 ) : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGAANTTC------GATT---TA--TCAGGAGTCTATCTTTGTGCAACTTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATGTAAATAC-----C-TNTATTTG-TTGTTTTTT
gi|7457 : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCG-TGGGCCC-G-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCAGGAGTCTATTTTTGTTCAACTTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATATAAATAC-----C-TCTATTTG-TTGTTTTTT
gi|7458 : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAAGAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCAGGAGTCTATGTTTGTTAAAGTTTTTACCGTTACTCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATATAAATAC-----C-TCTATTTG-TTGTTGTTT
gi|7459 : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCT-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCAGGAGTTTATTTTTGTTCAACATTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATATAAATAC-----C-TCTATTTGTTTGTGTTT
gi|7460 : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCCGGAGTGTATTTTTGTTCAAATCTTTACCGTTACCCCACCCACTTCA-----CAAATCGTTGAAAATATACACATTGTACATATAAATAC-----C-TCTATTTGTTTGTTGTT
gi|7461 : TACA-GTCAAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-T-T--AAGA-TAATA---CGAAATATC-CGAAGTTT------GATT---TA--TCAGGAGTCTATGTTTGTTCAACTTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACCTATAAATAC-----C-TCTATTTG-TTTTTGTTT
gi|7462 : TACA-GTAGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TAAGTAGTCTATCTTTGTG-AAATTTTTACCGTTACCCCACCCACTTCA-----TAAATCGTTGAAAATATACATGTTGTACATGTAAATAC-----C-TCTATTAG-TTGTTTTTT
gi|7463 : TACA-GTTGAAACTCGTTATTTCAA-A-TTCCG-TGGGACC-T-T--AAAAATAATT---CGAAATATC-CGAAGTTC------GATT---TA--TCAGGAGTCTTTTTTTGTTCAAATTTTTCCCGTTACACCACCCACTTCA-----TAAATTGTTGAAAATATACATGTTGTACATATAAATAC-----C-TCTATTTG---GTTTTTT
gi|7464 : TACA-GTCGAAACTCGTTATTTCGA-A-CTCTG-TGGGACC-G-T--AGAAATAATT---CGAAATATC-CGGACTTT------GATT---TA--TCAGGAGTCTACCTTTGTGCATTTTTTCACCGTTACCCCACCCACTTCA-----TAAATCATTGAAAATAT--ATG-TGTACATGTAAATAC-----C-TATATTTG-TTGTTTTTT
gi|7465 : TACA-GTCGAAACTCGTTATTTCGA-A-TTCCA-TGGGACC-G-T--AAAAATAATT---CGAAATATC-CGGACTTC------GATT---TA--TCAGGAGTCTACCTTTGTGCATCTTTTCACCGTTACCCCACCCACTTCA-----TAAATCTATGAAAATAT--ATG-TGTACATGTAAATAC-----T-GATATTTG-TGGTTTTTT
gi|7466 : TACA-GTCAAAACTCATTATTTCGA-A-TTCCG-TGAGACC-G-T--AAAAATAATC---CGAAATATC-CGGACTTC------TTTT---TA--TCAGAAGTTTACCTTTGTGCATCTTTTTACCGCTACCCCACCCACTTCA-----TAAATCATT-AAAATAT--ATG-TGTACAT
gi|7467 : TACA-GTCAAAACTCGTTATCTCGATA-TT-AG-AGGGACT-G-C--CAAAAAAACT---CAATATATC-CGAATATC------GA
gi|7468 : TACA-GTCCAAACTCGTTTACTCGA-A-ATCCT-TGGGACC-A-T--AAAAATAATT---CGGAATATC-CGGAATTC------GATT---TA--TCAGGAGTCGAATTTTGGGCGACTTTTTGTCGTTTCCCCATCCACTTC
gi|7469 : TACA-GTCGAAACTAACTAACTCGA-A-TTCCT-TTGTACC-A-T--AAAAATAACT---CGAAATATC-CGGAATTC------GATG---TA--TCCGGAATCGAACTGTTTCCAACTTTTTACTGTTACCACACCCGCTTCT-----TATAT
gi|7470 : TACA-ATCGAAACTCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAAT-----GAAGTTG------GATT---aatgtagt
gi|7471 : TACA-GTCGAAACTCGTTATCTCGATA-TT--GATGGGACT-GCC--AAAAATAACT---CGAGATATC-CGAATATC------GA
gi|7472 : TACA-GTCGAAACTCGTTATCTCGATA-TT-TG-AGGGACA-G-C--CAAAAAAACT---CGAGATATC-CGAAAATC------GA
gi|7473 : TACAAGTCTAAACTTATTATTTCAA-A-TTCCA-AGGGGCCAG-T----AAATGATT---CCACATATCAGGAAGT-----------------------GAG-----CTTTGTGT-ATTTTTTGCAGTTACCACACACACTTGA-----TTAATAATTG
gi|7474 : TACA-GTTGAAACTCGTTATTCCGA-A-CAACA-TGGTACC-A-A--CAAAACAATTAGACGACATATT-AGGAATTC------GACA---TA--TCAGAAAT
gi|7475 : TACA-GTCGAAACTCATTCTCTCGA-T-ATCGG-AGGGACT-G-C--CAAAACAACT---CGAGATATC-CGAATATCGGCATAGATT---TGTCTCAAGA-TCAATATTTAT
gi|7476 : TACA-GTCGAAACTCGTTATATCGATA-TT-TG-AGGGACT-G-C--CAAAAAAACT---CCAGATATC-CGAt
gi|7477 : TACA-GTCGAAACCTGTTATTTTGATA-TT-GG-AGGGACT-G-CCAAAAAAAAACT---CGAGATATC-CGAA
gi|7478 : TACA-GTCGAAACTCGTGATCTCGATA-TT-GG-AGGGACT-G-C--CAAAAAAAAT---CGAGATATC-CAAATATC------GA
gi|7479 : TACA-GTCGAAACTCATTATCTCGATA-TT-GG-AGGGACT-G-C--CAAAA-ACCT---CGAGATATC-CGAA
gi|7480 : TACA-GTCGAAACTAGTTGTCTCGATA-TT-AG-AGGGAAT-G-T--AAAAA-A--T---CGAAATATT-CGAATATC------GA
gi|7481 : TACA-GTCGAAACTAGTTCTCTCGATA-TT-AG-AGGGAAT-G-T--AAAAA-AA-T---CGAAATATT-CGAA
gi|7482 : TACA-GTCCAAACTTGTTATCTCGATA-TTG-G-AGGGACT-G-CCAAAAAACA--T---TGAAATATC-CGAACATCAACATAGATTTTGTC--TCAAGA-TCAATTTTTAT
gi|7483 : CA-GTCGAAACTCGTTATCTCGATA-TT--G-AGGGACT-G-C--CAAAAAAACT---CGTGATATC-CGAt
gi|7484 : A-GTTGAAACTTGTTATTTCTA-A-TTCCT-TGGGACC-A-T--AAAAATAATT---TGAAATATC-CTGAATTT------GATG---TA--TCAGGAATCAAATTTTGAGCATCTTTTTACTGTTAGCCTTCCCG-TTCATTACTTATATCATTGAAAATG-A-ATATT-TACTTGCAAATAC-----C-TGTATTTG-TTGTT
gi|7485 : -GTCGAAACTTGTTATTTCGA-AATTCCA-TGGGACT-G-T--AAAAATAATT---CGAAATATC-CGGACTTC------GATT---TA--TCAGGAGTCTACCTTTGTGCATCTTTTCACCGTTACCCCACCCACTCCA-----TAAATCATTGAAAATAT--ATG-TGTACATGTAAATAC-----C-TATATTTG-TTGTTTTTT
gi|7486 : TCGTTATTTCGA-A-TTCCG-TGGGACC-G-T--AAAAATAATT---CGAAATATA-CTGACTTC------GATT---TA--TCAGGAGTCTAC----------CTTTTCACCGTTACCGTAACCACTTCA-----TAAATCATTGAAAATAT--ATG-TGTACATGTAAACAC-----C-TATATTTG-TTGTTTTTT
gi|7487 : TTC------GATT---TA--TCAGGAGTCTACCTTTGTGCTTCTTTTCACTGTTACCCCACCCACTTCA-----TAAATCATTGAAAATAT--ATG-TATACATGTAAATAC-----C-TATATTTG-TTGTTTTTT
gi|7488 : TTTCACCATTACCCCACCCACTTCA-----TAAATCATTGAAAATAT--ATG-TGTACATGTAAATACATATACATGTATTTG-TTGTTTTTT