lowQualScore : 1 2 222 222 1111 22 1 111111 1 111 1111 11111 111111 1 11111 1111
lowQualScore : 4 4 22 0 1 22 0 3 0 1 1 111 1 5 3 777 0000 22 3 1 33 11 666 5 5 3 0 77 3 5 4 3 222222 44 8 9 99 0 6 888 55555 3333 3 00000 4 555555 2 9 3 0 6 44 22222 3 44 7 3 4 77 6 0 5 3 5 3333
lowQualScore : . . .. . . .. . . . . . ... . . . ... .... .. . . .. .. ... . . . . .. . . . . ...... .. . . .. . . ... ..... .... . ..... . ...... . . . . . .. ..... . .. . . . .. . . . . . ....
lowQualScore : 4 4 00 7 5 00 9 1 5 5 5 888 7 0 0 000 1111 66 0 8 88 99 444 5 0 8 2 00 5 9 8 9 333333 22 3 5 22 7 7 555 88888 7777 1 22222 0 999999 9 2 1 5 3 66 88888 3 66 1 6 3 99 0 7 7 7 0 4444
consensus : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTCA-TTTT-T-CA-CCGAATTTACG-TTCAAACTAACA-ATTATNAGCCGGGTTCAT-CTCCG--T--GCACCATTTTACA-C-NTTTT--TGTTCA-TANTGTCT-TCAGC-TAAAATTACAAACGANACTTGTACACGTGCACAACCCGTTCCAGCAAAATGAAAATGNGATTTT--TTCATCATTTCACCNTGGATTCGCATTGTAA--AACATTT-TGC--CTGACGTATTT---CGCT-N-AC-CAA----TTACTTTATCT----AACT-TTTTTGTTCA-TTACTTNATCAGCGGAAATGAT--CCGCTTAT-AAGTTATTCA-C--GAAAAACGNTTCA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-AAAAAAATGAAAGAATTTTTTT--T-TTTTTTT
Reference ( gi|5160 ) : TTTT-TTA-C--AAACAATCACTACCCGAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATACTCA-TTTTAT-CA-CCGAATTTAAC-TTCAAACTAACA-ATTATTAGCCGAGTTCAA-GTCCA--T--GTACCATTTTACA-C-ATTTTC-TGTTCA-TACTGTGT-TCAGC-TAAAATTACAAACGATACTTGTACACGTGCTCAACCCGTCCCAGCAAAATGAAAATGAGAGTTT--TTCATCATTTCACCTTGGATTCGCATTGTAA--AACAGTT-TGA--CTGACGTATTT---CGCT-C-GC-CAA----CTACTTTATCG----AACT-TTTTTCTTCA-TAACTTTATCAGCGGAAATGAT--CCGCTGAC-GAGTTATTCA-C--GAAAAACGGTTCA-TTTTGCCAAACTGCTCATTCCGCGAGAGT--GAAAAAAGTGGG-AAAAAAACGAAAGAATTTTTTT--T-TTTTTTT
gi|5166 : TTTT-TTA-C--AAACAATCACTACCCGAAGGTTAAAGGGG-AAC--GTTTTCTCATTTCACCAAAAGGAAAATACTCG-TTTTAT-CA-CCGAATTTAAC-TTCAAACTAACA-ATTATTAGCCGAGTTCAA-GTCCA--T--GTACCATTTTACA-C-ATTTTT-TGTTCA-TACTGTGT-TCAGC-TAAAATTACAAACGATACTTGTACACGTGCTCAACCCGTCCCAGCAAAATGAAAATGAGAGTTT--TTCATCATTTCACCTTGGATTCGCATTGTAA--AACAGTT-TGA--CTGACGTATTT---CGCT-C-GC-CAA----CTACTTTATCG----AACT-TTTTTCTTCA-TAACTTTATCAGCGGAAATGAT--CCGCTGAC-GAGTTATTCA-C--GAAAAACGGTTCA-TTTTGCCAAACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGGAAAAAAAACGAAAGAATTTTATT--T-TTTTTT
gi|5162 : TTTT-TTA-C--AAACAATCATTACCCGAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCGAAAGGAAAATACTCA-TTTTAT-CA-CCGAATTCAAC-TTCAAACTAACA-ATTATTAGCCGAGTTCAA-CTCCT--T--GTACCATTTTACA-C-ATTTTT-TGTTCA-TACTGTGT-TCAGC-TAAAATTACAAACGAAACTTGTACACGTGCACAACCCGTTCCAGCAAATTGAAAATGAGATATT--TACATCATATAACCTTGGATTCGCATTGTAA--AACATTT-TGC--CTGACATATTT---CGCT-T-AC-CAA----TTACTTTGTCT----AACT-TTTTTGTTCA-TTACTTGATCAGCGGAAATGAT--CCGCTTAC-ATGTTATTCA-C--GAAAAACGATTTA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGC-GG-AAAAAAATGAAAGAATTTTTTT--TATTTTTTT
gi|5174 : TTTT-TTA-C--AAACAATCAATTCCCAAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAATGAAAATACTCA-TTTTAT-CA-CCGAATTTACG-TTCAAACTAACA-ATTATTAGCCGCATTCAT-CTCCA--T--GTAACATTTTACA-C-AGTCTT-TGTTCA-TACTGTGT-TCAGC-TAAAATTACAAACGATACTTGTACACGTGCACAACTTGTTCCAGCAAAATGAAAATGAGATTTT--TTCATCATTTCACCTTGGATTCTCATTGTAA--AAGGTTT-TGC--CTGACGTACTT---CGCT-A-AC-CAA----TTACTTTATCT----AACT-TTTT--TTCA-TTACTTGATCAGCAGAAATGAT--CCGATTAT-AAGTTATTCA-C--GAAAAACGATTCATTTTTGCCAGACTGt
gi|5175 : TTTT-TTA-C--AA----TCAACAACCGAAGGTTAAAGGGG-AAT--TTTTTGTTATTTCACCAAATGGAAAATTCTCATTTTTTT-CA-CCGAATTGACG-TTCAAACTAACA-ATTATTAGCTGAGTTCAC-CTCCA--T--G-GCCATTTTAAA-C-ATTTTT-TGTTCA-TACTGTGT-TCAGG-TAAAATTACAAACAAAACTTTTACACGTTCACAACCCGTTCCAGCAACATGAAAAT--CATTTT--TTCATCATTTCACCTTGGATTCGTAATGGAA--AACGTTT-TGC--CTGACGTATTT---CGCT-A-AC-CAA----TTA-TTTATCT----AACT-TTTTTATTCA-TTAATTGATCAGCGGAAATGAT--CCGCTTAT-AAGTTATTCA-C--GAAAAACGATTCA-TTTTGCCAGAC----CATTCCGCGAGAGT--GAGAAAAGTGGG-GGAAAAATGAAAG-ATTGTTTT--A-TTATT
gi|5176 : TTTT-TTA----AAACAATCACTACCCGAAGGTTAAAGGGGGAAC--TTTTTCTCATTTCACTAAAAGGAAAATACTCA-TTTCAT-CA-CCGAATTTAAT-AGCAAACTAACG-ATAATTAGCCAAGTTCAT-TTCCA--T--GTACCATTTTACA-C-ATTTTT-T-TTCA-TACTGTGT-TCAGC-TAAAATTATAAACGAAACTTGTACACGTGCACAACCTGTTCCAGCAAAATGAAAATGAGATTTT--TTCATCATTTCACCTTGGATTCGCATTGTAA--AACATTT-TGC--CTGACGT--TT---A--T-C-GC-TAA----CCAATT----------ATT-TTATCC------AACTTT--------------T--TTGCTCAT-TACTTGATCAGC--GGA--------CA-TTTTGCCAGGCTGCTCATTCCTCGAGAGT--GAGTAAA-TTGG-AAAAAAATGAAAGAATTTTTTT--T-gatttt
gi|5179 : TTTTATTA-C--AAACAATCACTACCTTGAAGTTTAAGGGG-AAC--TTTTTCTCATTTCACCAAATGGAAAATTCTCA-TTTTTT-CA-CCGAATTTACA-ATCAAACTAACA-ATTAT-ATGCGAGTTCAA-CTCCA--T--GTACCATTTCACA-C-ATTTTT-TGTTCA-TACTGTGT-TCAGC-TAAAATTACAAACGAAACTTGTACATGTGCACAACCCGTTCCAGCAAAATGAAAAT--GAGCTT--TT-----TTTCATCGT---TTCGCATTGTTA--AACATTT-TGC--CTGACGTATTT---CGC
gi|5168 : TTTT-ATAAC--AAACAATCACTACCCGGAAGTTAAAGTGG-AAC--TTTTGCTCATTTCACCAAAAGGAAAATTCTCA-TTTT-T-CA-CCGAATTTACG-TTGAAACTAACA-CTTATTAGCCGGGTCCAC-GTCAG--T--GAA-------ACA-A-ATTTTC--GT-CA-TACTGTCT-CCAGC-TTAATTTATAAACGAAAGTTGTATATGTGCACAATCCGTTGCAGCAAAATAAAAATGTGATTTA--TTCATCCTTTCACAACGGATTTGCATTTTAA--AACATTT-GGT--CCGACGTATTT----------AT-TAA----CT-TTTTATTGATCTAACA-TTTTTGTTCA-TTACTTTATCAGTGAAAATAAA--CCGCTTAA-AAGTTATTCA-C--GAAAAACATTTCA-TTaaaccaa
gi|5163 : TTTT-ATAAC--AAACAATCACTACCCGGAAGTTAAAGTCG-AAC--TTTTGCTCAATTCACCAAAAGGAAAATTCTCA-TTTT-T-CA-CCGAATTTACG-TTGAAACTAACA-CTTATTAGCCGGGTCCAT-GTCAG--T--GAA-------ACA-C-ATTTTC--G-TCA-CACTGTCT-CCAGC-TCAATTTATAAACGAAAGTTGTATATGTGCACAATCCGTTACAGCAACATAAAAATGTGATTTA--TTCATC-CTTCACAACGGATTTGCATTTTAA--AACATTT-GGT--CCGACGTATTT----ATT-A-AC-CTT----TTA-TTGATCT----AACA-TTTTTGTTCA-TTATTTTATTAGTGAAAATAAA--CCGCTTAA-AAGTAATTCA-C--GAAAAACATTTCA-TT
gi|5180 : TTTT-TTA-C--AAACAATCACCACCCACAAGTTATAGGGG-AACCGTTTTTCTCATTTCACCAAAAGTAATATTATCA-TTTTTTTCA-CCGA-TTTAACGTTCAAAGTAACA-ATTATAAGCAGGATTCACCGTC-A--T--GTA---------A-C-AT------GTTCAATA-TATTT-TCAGC-TAAAGTTTCAAACGAAACTTGTATATGTGCACAATCCGTTCCAATGAAATGAAAGTGTGATTTT--TTCATCGTTTCACCGTAGATTCGCATTGTAA--AACATTA-CGC--CTGACGTATTC---CTCT-A-AC-CAA----TAATTTTATAT----TACT-TTTCT
gi|5181 : TTTT-TTA-C--AAACAATCACTACTCAGAAATTAAAGGGG-AAC--TTTTTATCATTTCACCAAAACGAAAACTTTCATTTTTAT--A-ACGAATCTACT-TTCAAATTAACA-ATGCTTAGCCGGGTTCAC-CTCCA--T--GTACCATTTTACA-C-TTTTCT-TGTTCA-TAATATAT-TCAGA-TAAAGTTACAAACAAAAC--GTACACTTGCACAATCCGTTCtattattgat
gi|5167 : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAATGGAAATTTCTAA-TTTT-T-CA--CG---------TTCAAACTAACA-ATTATATGCTGGATTCA---TTTATCT--GCACCA-TTTACA-C-CTTCT--TGTT-----CTGTGTCTTAAG-TGAAAT----AGCGATA
gi|5177 : TTTT-TTAAC--AAACAATCACTACCCAAAGTTTAAAGGGG-AAC--TTTTTCTTATTTGACCAAAAGGAAAATATTCA-TTATAT-CA-CC-AATTTACG-TTCAAACTAATA-ATTATCAGCCGGATTTAT-TTCTC--T--GCACCATTTTCCA-C-CTTTT--TGTTC---AGTGTCT-TTAGC-AAAAA--AGCAAC-ATACTTtactaaaaaaaaaatcatatttccagcagaacagcagaatagcagaatgaaaattggaataaaatgaaagttgtttttttataacttattttagtacacatgtgaacataccggaagtcttaagaaatattttttaaccaattttaacgctaaccaattactttatctaccttttttgttcattacttgatcagcggaaatgatccgcttacaagttattcacgaaaaacgatttattttgccagactgctcattccgcgagagtgagaaaagtggggaaaaaatgaaagattttttt
gi|5164 : TTTT-TTA-C--AAACAATCACCACCTGAAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAATTGAAAATTCTCA-TTTT-T-CA-CCGAATTTACG-TTCAAACTAACA-ATTATGAGTCTGGTTTAT-TTCTC--T--GCACCAATTTATA-C-CTTCT--TGTT---TAGTGTCT-TAAGC--AAAAT----AGCGATA
gi|5170 : TTTT-TTA-C--AAACAATCACTACCCGAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATACTCA-TTTTAT-CA-CCGAATCTAAC-TTtactaaaaaaaaatttgttttgatatttccagaagaacagcagaatagcaaaatgaaatattttcat
gi|5169 : TTTT-TTA-C--AAACAATCACCACCTGAAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAATTGAAAATTCTCA-TTTT-T-CA-CCGAATTTACG-TTCAAACTAACA-ATTATGAGTCTGATTTAT-TGCTC--T--GCACAATTTTCTA-C-CTTCT--TGTT---TAGTGTCT-TAAGC--AAAATT
gi|5178 : TTTTATTA-C--GAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTGACCAAAAGGAAAATTCTCA-TTTTTT-CA-CCGAATTTACG-TTCACACTAACA-ATTATAAGCCGGATT
gi|5171 : TTTTATTA-C--AAATAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTGCTCATTTCACCAAAAGGGAAATTCTCA-TTTT-T-CA-CCGAATTTACG-TTGAAACTAACA-CTTATTAGCCGGGT
gi|5184 : TTTT-TTA-C--AAACAATCACCATCCGAAAGTTGAAGGGG-AAC--TTTTTCTCATTTCGCCAAATGGAAAATTCTCA-TTTT-T-CA-CCGAATTTACG-TTCAAACTAACA-AATATGAGCC
gi|5172 : TTTT-TTA-C--AAGCAATCAGCACCCGGCAATTAAAGGGG-AAC--TTTTTATCAATTCACCTAAAGGAAAATTCTCA-TTTT-T-CA-CCGACTTTACG-TTCAAACTAACA-ATTATGAGTCTGATTTAT-TTCTC--T--GCATCATTTTCTA-C-CTTCT--TGTT---TAGTGTCT-TAAGC--AAAATAGCAAA--ATACT
gi|5165 : TTTT-TTA-C--AAGCAATCAGCACCCGGAAATTAAAGGGG-AAC--TTTATATCAATTCAACAAAAAGAAAATTCTCA-TTTT-T-CA-CCG-ACTTAACGTTCAAACTAACA-ATTAAGAGTCTGATTTAT-TTCTC--T--GCATCATTTTCTA-C-CTTCT--TGTT---TAGTGTCT-TAAGC--AAAATAGCAA--TATACTaacaaattttttttatatatatatttccagcagaacaacagaatagcagaatgaaatattttcat
gi|5185 : TTTT-TTA------ACAATCACCACCCGAAAGTTA--GATG-AAC--TTTTTCTCATTTCACAAAATGGAAAAGTCTCT-TTTT-T-CA-CCGAATTTACG-TTCAAACAAACA-ATTATGAGCCCGATTTAT-TTCTC--T--GCACCATTTT-C--T-ATCTTCTTGTT---TAGTGTCT-GAAGC--AAAATAGCAA--TATACT
gi|5182 : TTGT-TTA-C--AAACAATCTTAACCCGAAAGTTAAAGGCG-AAC---TTTTCTAACTTTACCGAAATGGAAATTCTCA-ATTTTT-TA-CCTAATTCACG-TTCAAATTAACAGATGACGGTCCGGATTCGC-CTCTC--T--GCACCAGTTTATA-C-CTTT---TGTTGA-CAGTGTCT-TAAGCATAA
gi|5183 : TTTT-TTA-C--AAGCAATCACTACCTGGAAGT--------------------------CACCAAAAGTAAA---CT---TTTTCT-CA-TCGCATTTACG-TTCAAACTAACA-ATTATTAGCCATGTCCA---TCTG--TTCGCACCATTTAACA-C-CTTTT--TGTTCA-
gi|5173 : TTTT-TTA-C--CAACAATCAACAACCGAAGGTTAAAGTTG-AAT--TTTTTTT
gi|5161 : TTTT-TTA-C--CAACAATCAACAACCGAAGGTTAAAGTTG-AAT--TTTTTTT
gi|5186 : TT-TTA-TTTAAACAATCACTACCCGGAAGTTAAAGAGG-AGT--TTTTTCTCATTTCACCAAATGGAAAATTCTAA-TTTT-T-CA-CCGAATTTATG-TTCAAACTAAAA-ATTATAAGCCGAATACAT-TTC----T--GCACCATTTTCCA-T-CTCTT--TGTTCA-----GTGTCTTAAA-GAAAATAGCAAA--ATACT
gi|5187 : TT-TAA-C--AAACAATCACTACCCGGGATTTAAAGGTG-AAC--TTTTTCTCATTTCACAAAAAAGAAATTTCTCA-TTTT-T-AAGCCGAAT
gi|5188 : --TTCTTCTCATTTCACCAAAAGGGAAATTCTAT-TTTTTT-CA-CCGTATTTACG-TTCAAACTTACA-ATTATTAGCCTGGTTC-C-CTCCA--T--GTACCATTTTACACC-ACTTT--TGTTCA-TAATGTTT-TCAGC-TTAAATTACAAACGAAACTT-TAAACGTATACAATCCGTTCAACCAAAATGAAAATGTGATTTTCCTTCATCGTTTCACCGTAGATTTGCATTGTAA--AACAATT-TGC--CTGACGTATTT---CGCT-T-AC-CAA----TTACTTTATGA----AACT-TTTT--TTCA-TTACTTTATCAGCGGAAATGAT--CCACTTAT-AAGTTATTTA-CAAAAAAAATGTTTCA-TTTTGCAAGACTGCTTATTCCGCAAAAGTCCGAGAAAAGTGAG-AAAAAAATGAAAGAA
gi|5189 : TACA-CCATTTT--TGTTCA-TAATGTCT-TTAGC-T--------AAATGA-----GCACACGTACATAACGTGTTTCAGCTTAATGA
gi|5164 : CTCATTTCACCAAATTGAAAA-------TT--CTCATT-TTTCACC--GAATTTACGTTCAAACTAACAATTATGAGTCTGGTTTATTT---CTCTGC-AC-CAA--------TTTAT-------ACC-TTCTTGTTTA-tcgtgcgtcttttttcatgtttc
gi|5169 : ttttttacaaacaatcaccacctgaaagttaaaggggaactttttCTCATTTCACCAAATTGAAAA-------TT--CTCATT-TTTCACC--GAATTTACGTTCAAACTAACAATTATGAGTCTGATTTATT-----GCT-CTGCACAATTTTCTACCTTgtgtcttaagcaaaatagcgatatactaaaaaaaaatttgttttgatatttccagaagaacagcagaatagcaaaatgaaatattttcat
gi|5181 : ttttttacaaacaatcaccacctgaaagttaaaggggaactttttCTCAG--AAATTAAAG-GGGAACTT--TTTATCATTTCACCcttgtttagtgtcttaagcaaaatt
gi|5190 : ttttttacaaacaatcactaCGTATTT---CGCT-T-AC-CAA----TTACTTTATCT----AACA-TTTGTGTTCA-TTACTTCATCAGCGAAAATAAT--CCGCTTAT-AAGTTATTCA-C--GAAAAATCTTTCA-TTTTGACAGACAGCTCATTCGGCAAaaaacgaaaactttcatttttataacgaatctactttcaaattaacaatgcttagccgggttcacctccatgtaccattttacacttttcttgttcataatatattcagataaagttacaaacaaaacgtacacttgcacaatccgttc
gi|5167 : ATTTTAACGCT-A-AC-CAA----TTACTTTATCT----ACCT-TTTTTGTTCA-TTACTTGATCAGCGGAAATGAT--CCGCTTAC-AAGTTATTCA-C--GAAAAACGATTTA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-GAAAAAATGAAAG-ATTTTTTT--
gi|5191 : ttttttacaaacaatcactacccggaagttaaaggggaactttttctcatttcaccaaatggaaatttctaatttttcacgttcaaactaacaattatatgctggattcatttatctgcaccatttacaccttcttgttctgtgtcttaagtgaaatagcgatatactaaaaaaaaaatcatatttccagcagaacagcagaatagcagaatgaaaattggaataaaatgaaagttgtttttttataacttattttagtacacatgtgaacataccggaagtcttaagaaatattttttaaccaATCT----AACT-TTTTTGTTCA-TTACTTGATCAGCGGAAATGAT--CCGCTTAC-ATGTTATTCA-C--GAAAAACGATTTA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGG---AAAAAATGAAAGAATTTTTTTCAT-TTTTTTT
gi|5166 : G----AACCGTTTTTCGTGAATAACTC-GTCAGCGGA--TCATTTCCGCTGATAAAGTTA-TGA-A--GAAAAA-AGTTC
Alignments
lowQualScore : 11 11 111 1111111 111111111111111 2222222222222222
lowQualScore : 4 4 22 1 11 1 1 1 22 55 1 1 1 5555 00 22 1 000 1 5 666 2 0 22 66 3333333 55 3 5555 5555 33 33 33 2 2 777777777777777 33 1 1 7777 555 1 2222222222222222 8 22 1 1 3 44 2 3 66 5 3 9999
lowQualScore : . . .. . .. . . . .. .. . . . .... .. .. . ... . . ... . . .. .. ....... .. . .... .... .. .. .. . . ............... .. . . .... ... . ................ . .. . . . .. . . .. . . ....
lowQualScore : 3 3 00 4 99 5 5 5 44 66 5 6 0 4444 22 55 5 333 7 2 333 8 5 44 22 0000000 88 3 7777 7777 77 77 99 0 9 999999999999999 99 9 0 1111 888 0 1111111111111111 0 55 0 6 3 66 2 3 99 0 2 9999
consensus : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATNAGCCGGGTTCAT--CTCCGT--GCACCATTTTACAC-C-TTT-T-TGTTCA-TANTGTCTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CACGTGCACAAC--CCG--TTCCAGCAAAATG--AAAATGNG-A---------------TTTT--TTCATCGTTTCACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACGTATTTCGCTAACCAATT----------------ACTTTATCTAACTTTTTTGTTCATTACTTNATCAGCGGAAATGATCCGCTTACAAGTTATTCA-C--GAAAAACGNTTCA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-AAAAAAATGAAAGAATTTTTTT--T-TTTTTTT
Reference ( family-625 ) : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATNAGCCGGGTTCAT--CTCCGT--GCACCATTTTACAC-N-TTT-T-TGTTCA-TANTGTCTT-CAGC-TAAAAT-------TAC--AAACGANACTTGT----A----CACGTGCACAAC--CCG--TTCCAGCAAAATG--AAAATGNG-A---------------TTTT--TTCATCATTTCACCNTGGATTCGCATTGTAAAACATTTT----GCCT---GACGTATTTCGCTNACCAATT----------------ACTTTATCTAACTTTTTTGTTCATTACTTNATCAGCGGAAATGATCCGCTTATAAGTTATTCA-C--GAAAAACGNTTCA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-AAAAAAATGAAAGAATTTTTTT--T-TTTTTTT
gi|5160 : TTTT-TTA-C--AAACAATCACTACCCGAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATACTC-A-TT-TTA-T--CA-CCGAATTTAACTTCAAACTAACA-ATTATTAGCCGAGTTCAA--GTCCAT--GTACCATTTTACAC-A-TTT-TCTGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGATACTTGT----A----CACGTGCTCAAC--CCG--TCCCAGCAAAATG--AAAATGAG-A---------------GTTT--TTCATCATTTCACCTTGGATTCGCATTGTAAAACAGTTT----GACT---GACGTATTTCGCTCGCCAACT----------------ACTTTATCGAACTTTTTTCTTCATAACTTTATCAGCGGAAATGATCCGCTGACGAGTTATTCA-C--GAAAAACGGTTCA-TTTTGCCAAACTGCTCATTCCGCGAGAGT--GAAAAAAGTGGG-AAAAAAACGAAAGAATTTTTTT--T-TTTTTTT
gi|5161 : TTTT-TTA-C--CAACAATCAACAACCGAAGGTTAAAGTTG-AAT--TTTTTTT
gi|5162 : TTTT-TTA-C--AAACAATCATTACCCGAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCGAAAGGAAAATACTC-A-TT-TTA-T--CA-CCGAATTCAACTTCAAACTAACA-ATTATTAGCCGAGTTCAA--CTCCTT--GTACCATTTTACAC-A-TTT-TTTGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CACGTGCACAAC--CCG--TTCCAGCAAATTG--AAAATGAG-A---------------TATT--TACATCATATAACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACATATTTCGCTTACCAATT----------------ACTTTGTCTAACTTTTTTGTTCATTACTTGATCAGCGGAAATGATCCGCTTACATGTTATTCA-C--GAAAAACGATTTA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGC-GG-AAAAAAATGAAAGAATTTTTTT--TATTTTTTT
gi|5163 : TTTT-ATAAC--AAACAATCACTACCCGGAAGTTAAAGTCG-AAC--TTTTGCTCAATTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTGAAACTAACA-CTTATTAGCCGGGTCCAT--GTCAGT--GAA-------ACAC-A-TTT-T-CG-TCA-CACTGTCTC-CAGC-TCAATT-------TAT--AAACGAAAGTTGT----A----TATGTGCACAAT--CCG--TTACAGCAACATA--AAAATGTG-A---------------TTTA--TTCATC-CTTCACAACGGATTTGCATTTTAAAACATTTG----GTCC---GACGTATTT-ATTAACCTTTT----------------A-TTGATCTAACATTTTTGTTCATTATTTTATTAGTGAAAATAAACCGCTTAAAAGTAATTCA-C--GAAAAACATTTCA-TTt
gi|5164 : TTTT-TTA-C--AAACAATCACCACCTGAAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAATTGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATGAGTCTGGTTTAT--TTCTCT--GCACCAATTTATAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAATAGCGATATACTAAAAAAAAATTTGTTTTGA----TATTTCCAGAA-----G---AACAGCAGAATAGCAAAATGAA-A---------------TATT--TTCAT
gi|5165 : TTTT-TTA-C--AAGCAATCAGCACCCGGAAATTAAAGGGG-AAC--TTTATATCAATTCAACAAAAAGAAAATTCTC-A-TT-TT--T--CA-CCGACTTAACGTTCAAACTAACA-ATTAAGAGTCTGATTTAT--TTCTCT--GCATCATTTTCTAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAAT-------AGC--AA
gi|5166 : TTTT-TTA-C--AAACAATCACTACCCGAAGGTTAAAGGGG-AAC--GTTTTCTCATTTCACCAAAAGGAAAATACTC-G-TT-TTA-T--CA-CCGAATTTAACTTCAAACTAACA-ATTATTAGCCGAGTTCAA--GTCCAT--GTACCATTTTACAC-A-TTT-TTTGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGATACTTGT----A----CACGTGCTCAAC--CCG--TCCCAGCAAAATG--AAAATGAG-A---------------GTTT--TTCATCATTTCACCTTGGATTCGCATTGTAAAACAGTTT----GACT---GACGTATTTCGCTCGCCAACT----------------ACTTTATCGAACTTTTTTCTTCATAACTTTATCAGCGGAAATGATCCGCTGACGAGTTATTCA-C--GAAAAACGGTTCA-TTTTGCCAAACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGGAAAAAAAACGAAAGAATTTTATT--T-TTTTTTtatact
gi|5167 : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAATGGAAATTTCTA-A-TT-TT--T--C----------ACGTTCAAACTAACA-ATTATATGCTGGATTCAT--TTATCT--GCACCA-TTTACAC-C-TTC-T-TGTTC--T-GTGTCTT-AAG--TGAAATAGCGATATACTAAAAAAAAAATCAT----ATTTCCA---GCAGAACAGCAGAAT---AGCAGAATG--AAAATTGG-AATAAAATGAAAGTTGTTTT--TTTATAACTT-ATTTTAG-TACACA-TGT-GAACATACCGGAAGTCTTAAGAAATATTTT-TTAACCAATTTTAACGCTAACCAATTACTTTATCTACCTTTTTTGTTCATTACTTGATCAGCGGAAATGATCCGCTTACAAGTTATTCA-C--GAAAAACGATTTA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-GAAAAAATGAAAG-ATTTTTTT--
gi|5168 : TTTT-ATAAC--AAACAATCACTACCCGGAAGTTAAAGTGG-AAC--TTTTGCTCATTTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTGAAACTAACA-CTTATTAGCCGGGTCCAC--GTCAGT--GAA-------ACAA-A-TTT-T-CG-TCA-TACTGTCTC-CAGC-TTAATT-------TAT--AAACGAAAGTTGT----A----TATGTGCACAAT--CCG--TTGCAGCAAAATA--AAAATGTG-A---------------TTTA--TTCATCCTTTCACAACGGATTTGCATTTTAAAACATTTG----GTCC---GACGTATTT-ATTAACTTTTT----------------A-TTGATCTAACATTTTTGTTCATTACTTTATCAGTGAAAATAAACCGCTTAAAAGTTATTCA-C--GAAAAACATTTCA-TT
gi|5169 : TTTT-TTA-C--AAACAATCACCACCTGAAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAATTGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATGAGTCTGATTTATTGCTC--T--GCACAATTTTCTAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAAT-------T
gi|5170 : TTTT-TTA-C--AAACAATCACTACCCGAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATACTC-A-TT-TTA-T--CA-CCGAATCTA
gi|5171 : TTTTATTA-C--AAATAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTGCTCATTTCACCAAAAGGGAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTGAAACTAACA-CTTATTAGCCGGGTactt
gi|5172 : TTTT-TTA-C--AAGCAATCAGCACCCGGCAATTAAAGGGG-AAC--TTTTTATCAATTCACCTAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGACTTTACGTTCAAACTAACA-ATTATGAGTCTGATTTAT--TTCTCT--GCATCATTTTCTAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAAT-------AGC--AAA--ATACT
gi|5173 : TTTT-TTA-C--CAACAATCAACAACCGAAGGTTAAAGTTG-AAT--TTTTTTTaacaaattttttttatatatatatttccagcagaacaacagaatagcagaatgaaatattttcat
gi|5174 : TTTT-TTA-C--AAACAATCAATTCCCAAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAATGAAAATACTC-A-TT-TTA-T--CA-CCGAATTTACGTTCAAACTAACA-ATTATTAGCCGCATTCAT--CTCCAT--GTAACATTTTACAC-AGTCT-T-TGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGATACTTGT----A----CACGTGCACAAC--TTG--TTCCAGCAAAATG--AAAATGAG-A---------------TTTT--TTCATCATTTCACCTTGGATTCTCATTGTAAAAGGTTTT----GCCT---GACGTACTTCGCTAACCAATT----------------ACTTTATCTAACTTTTT--TTCATTACTTGATCAGCAGAAATGATCCGATTATAAGTTATTCA-C--GAAAAACGATTCATTTTTGCCAGACTG
gi|5175 : TTTT-TTA-C--AA----TCAACAACCGAAGGTTAAAGGGG-AAT--TTTTTGTTATTTCACCAAATGGAAAATTCTC-A-TT-TTTTT--CA-CCGAATTGACGTTCAAACTAACA-ATTATTAGCTGAGTTCAC--CTCCAT--G-GCCATTTTAAACAT-TTT-T-TGTTCA-TACTGTGTT-CAGG-TAAAAT-------TAC--AAACAAAACTTTT----A----CACGTTCACAAC--CCG--TTCCAGCAACATG--AAAAT--C-A---------------TTTT--TTCATCATTTCACCTTGGATTCGTAATGGAAAACGTTTT----GCCT---GACGTATTTCGCTAACCAATT----------------A-TTTATCTAACTTTTTTATTCATTAATTGATCAGCGGAAATGATCCGCTTATAAGTTATTCA-C--GAAAAACGATTCA-TTTTGCCAGAC----CATTCCGCGAGAGT--GAGAAAAGTGGG-GGAAAAATGAAAG-ATTGTTTT--A-TTATT
gi|5176 : TTTT-TTA----AAACAATCACTACCCGAAGGTTAAAGGGGGAAC--TTTTTCTCATTTCACTAAAAGGAAAATACTC-A-TT-TCA-T--CA-CCGAATTTAATAGCAAACTAACG-ATAATTAGCCAAGTTCAT--TTCCAT--GTACCATTTTACAC-A-TTT-T-TTTTCA-TACTGTGTT-CAGC-TAAAAT-------TAT--AAACGAAACTTGT----A----CACGTGCACAAC--CTG--TTCCAGCAAAATG--AAAATGAG-A---------------TTTT--TTCATCATTTCACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACGTTTATCGCTAACCAATT----------------A-------------TTTTATCCA--ACTTT--------------TTTGCTCATTACTTGATCAGC--GGA--------CA-TTTTGCCAGGCTGCTCATTCCTCGAGAGT--GAGTAAA-TTGG-AAAAAAATGAAAGAATTTTTTT--T-gatttt
gi|5177 : TTTT-TTAAC--AAACAATCACTACCCAAAGTTTAAAGGGG-AAC--TTTTTCTTATTTGACCAAAAGGAAAATATTC-A-TTATA--T--CA-CC-AATTTACGTTCAAACTAATA-ATTATCAGCCGGATTTAT--TTCTCT--GCACCATTTTCCAC-C-TTT-T-TGTTC---AGTGTCTT-TAGC-AAAAA
gi|5178 : TTTTATTA-C--GAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTGACCAAAAGGAAAATTCTC-ATTT-TT--T--CA-CCGAATTTACGTTCACACTAACA-ATTATAAGCCGGATTagcaacatactt
gi|5179 : TTTTATTA-C--AAACAATCACTACCTTGAAGTTTAAGGGG-AAC--TTTTTCTCATTTCACCAAATGGAAAATTCTC-A-TT-TTT-T--CA-CCGAATTTACAATCAAACTAACA-ATTATATG-CGAGTTCAA--CTCCAT--GTACCATTTCACACAT-TTT-T-TGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CATGTGCACAAC--CCG--TTCCAGCAAAATG--AAAATGAG-C---------------TTTT---------TTTCATCGT---TTCGCATTGTTAAACATTTT----GCCT---GACGTATTTCGCAAACCAA
gi|5180 : TTTT-TTA-C--AAACAATCACCACCCACAAGTTATAGGGG-AACCGTTTTTCTCATTTCACCAAAAGTAATATTATC-A-TT-TT--TTTCA-CCGATTTAACGTTCAAAGTAACA-ATTATAAGCAGGATTCA-----CCGT------CATGTAACA----------TGTTCAATA-TATTTT-CAGC-TAAAGT-------TTC--AAACGAAACTTGT----A----TATGTGCACAAT--CCG--TTCCAATGAAATG--AAAGTGTG-A---------------TTTT--TTCATCGTTTCACCGTAGATTCGCATTGTAAAACATTAC----GCCT---GACGTATTCCTCTAACCAATA----------------ATTTTATATTACTTTT---CTTATTA-TTGAT
gi|5181 : TTTT-TTA-C--AAACAATCACTACTCAGAAATTAAAGGGG-AAC--TTTTTATCATTTCACCAAAACGAAAACTTTC-A-TT-TT--TA-TA-ACGAATCTACTTTCAAATTAACA-ATGCTTAGCCGGGTTCAC--CTCCAT--GTACCATTTTACAC-T-TTTCT-TGTTCA-TAATATATT-CAGA-TAAAGT-------TAC--AAACAAAAC--GT----A----CACTTGCACAAT--CCG--TTC
gi|5182 : TTGT-TTA-C--AAACAATCTTAACCCGAAAGTTAAAGGCG-AAC---TTTTCTAACTTTACCGAAATGGAAATTCTCAA-TT-TT--T--TA-CCTAATTCACGTTCAAATTAACAGATGACGGTCCGGATTCGC--CTCTCT--GCACCAGTTTATAC-C--TT-T-TGTTGA-CAGTGTCTT-AAGCATAA
gi|5183 : TTTT-TTA-C--AAGCAATCACTACCTGGAAGT--------------------------CACCAAAAGTAAACTT------TT-TC--T--CA-TCGCATTTACGTTCAAACTAACA-ATTATTAGCCATGTCCAT--CT--GTTCGCACCATTTAACAC-C-TTT-T-TGTTCA-
gi|5184 : TTTT-TTA-C--AAACAATCACCATCCGAAAGTTGAAGGGG-AAC--TTTTTCTCATTTCGCCAAATGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-AATATGAGCC
gi|5185 : TTTT-TTA------ACAATCACCACCCGAAAGTTA--GATG-AAC--TTTTTCTCATTTCACAAAATGGAAAAGTCTC-T-TT-TT--T--CA-CCGAATTTACGTTCAAACAAACA-ATTATGAGCCCGATTTAT--TTCTCT--GCACCATTTTCTAT-C-TTC-T-TGTT---TAGTGTCTG-AAGC--AAAAT-------AGC--AA
gi|5186 : TT-TTA-TTTAAACAATCACTACCCGGAAGTTAAAGAGG-AGT--TTTTTCTCATTTCACCAAATGGAAAATTCTA-A-TT-TT--T--CA-CCGAATTTATGTTCAAACTAAAA-ATTATAAGCCGAATACAT--TTC--T--GCACCATTTTCCAT-C-TCT-T-TGTTC---AGTGTCTTAAAG---AAAAT-------AGC--AAA--ATACTtatact
gi|5187 : TT-TAA-C--AAACAATCACTACCCGGGATTTAAAGGTG-AAC--TTTTTCTCATTTCACAAAAAAGAAATTTCTC-A-TT-TT--T--AAGCCGAAT
gi|5188 : --TTCTTCTCATTTCACCAAAAGGGAAATTCT--A-TT-TT--TTTCA-CCGTATTTACGTTCAAACTTACA-ATTATTAGCCTGGTTC-C--CTCCAT--GTACCATTTTACAC-CACTT-T-TGTTCA-TAATGTTTT-CAGC-TTAAAT-------TAC--AAACGAAACTT-T----A----AACGTATACAAT--CCG--TTCAACCAAAATG--AAAATGTG-A---------------TTTTCCTTCATCGTTTCACCGTAGATTTGCATTGTAAAACAATTT----GCCT---GACGTATTTCGCTTACCAATT----------------ACTTTATGAAACTTTTT--TTCATTACTTTATCAGCGGAAATGATCCACTTATAAGTTATTTA-CAAAAAAAATGTTTCA-TTTTGCAAGACTGCTTATTCCGCAAAAGTCCGAGAAAAGTGAG-AAAAAAATGAAAGAA
gi|5189 : TACAC-CATTT-T-TGTTCA-TAATGTCTT-TAGC-T-----------------AAATGA-----GC----A----CACGTACATAAC--GTG--TTTCAGCTTAATG--ATCGTGCGTC---------------TTTT--TTCAT-GTTTC
gi|5190 : CGTATTTCGCTTACCAATT----------------ACTTTATCTAACATTTGTGTTCATTACTTCATCAGCGAAAATAATCCGCTTATAAGTTATTCA-C--GAAAAATCTTTCA-TTTTGACAGACAGCTCATTCGGCAA
gi|5191 : ATCTAACTTTTTTGTTCATTACTTGATCAGCGGAAATGATCCGCTTACATGTTATTCA-C--GAAAAACGATTTA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGG---AAAAAATGAAAGAATTTTTTTCAT-TTTTTTT
Alignments
lowQualScore : 11 11 111 1111111 111111111111111 2222222222222222
lowQualScore : 4 4 22 1 11 1 1 1 22 55 1 1 1 5555 00 22 1 222 1 1 666 2 0 22 66 9999999 55 5555 5555 33 33 5555 33 777777 1 2 999999999999999 33 4 1 7777 555 0 0000000000000000 5 22 1 0 3 44 2 3 66 5 3 9999
lowQualScore : . . .. . .. . . . .. .. . . . .... .. .. . ... . . ... . . .. .. ....... .. .... .... .. .. .... .. ...... . . ............... .. . . .... ... . ................ . .. . . . .. . . .. . . ....
lowQualScore : 3 3 00 4 99 5 5 5 44 66 5 6 0 4444 22 55 5 222 7 7 333 8 5 44 22 5555555 88 3333 3333 44 44 7777 77 777777 9 7 333333333333333 77 4 3 1111 888 7 4444444444444444 9 55 0 8 3 66 2 3 99 0 2 9999
consensus : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATNAGCCGGGTTCAT--CTCCGT--GCACCATTTTACAC-C-TTT-T-TGTTCA-TANTGTCTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CACGTGCACAAC--CCG--TTCCAGCAAAAT----G--AA------AATGAG-A---------------TTTT--TTCATCGTTTCACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACGTATTTCGCTAACCAA----------------TTACTTTATCTAACTTTTTTGTTCATTACTTNATCAGCGGAAATGATCCGCTTACAAGTTATTCA-C--GAAAAACGNTTCA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-AAAAAAATGAAAGAATTTTTTT--T-TTTTTTT
Reference ( family-625 ) : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATNAGCCGGGTTCAT--CTCCGT--GCACCATTTTACAC-C-TTT-T-TGTTCA-TANTGTCTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CACGTGCACAAC--CCG--TTCCAGCAAAAT----G--AA------AATGNG-A---------------TTTT--TTCATCGTTTCACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACGTATTTCGCTAACCAA----------------TTACTTTATCTAACTTTTTTGTTCATTACTTNATCAGCGGAAATGATCCGCTTACAAGTTATTCA-C--GAAAAACGNTTCA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-AAAAAAATGAAAGAATTTTTTT--T-TTTTTTT
gi|5160 : TTTT-TTA-C--AAACAATCACTACCCGAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATACTC-A-TT-TTA-T--CA-CCGAATTTAACTTCAAACTAACA-ATTATTAGCCGAGTTCAA--GTCCAT--GTACCATTTTACAC-A-TTT-TCTGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGATACTTGT----A----CACGTGCTCAAC--CCG--TCCCAGCAAAAT----G--AA------AATGAG-A---------------GTTT--TTCATCATTTCACCTTGGATTCGCATTGTAAAACAGTTT----GACT---GACGTATTTCGCTCGCCAA----------------CTACTTTATCGAACTTTTTTCTTCATAACTTTATCAGCGGAAATGATCCGCTGACGAGTTATTCA-C--GAAAAACGGTTCA-TTTTGCCAAACTGCTCATTCCGCGAGAGT--GAAAAAAGTGGG-AAAAAAACGAAAGAATTTTTTT--T-TTTTTTT
gi|5161 : TTTT-TTA-C--CAACAATCAACAACCGAAGGTTAAAGTTG-AAT--TTTTTTT
gi|5162 : TTTT-TTA-C--AAACAATCATTACCCGAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCGAAAGGAAAATACTC-A-TT-TTA-T--CA-CCGAATTCAACTTCAAACTAACA-ATTATTAGCCGAGTTCAA--CTCCTT--GTACCATTTTACACAT-TTT-T-TGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CACGTGCACAAC--CCG--TTCCAGCAAATT----G--AA------AATGAG-A---------------TATT--TACATCATATAACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACATATTTCGCTTACCAA----------------TTACTTTGTCTAACTTTTTTGTTCATTACTTGATCAGCGGAAATGATCCGCTTACATGTTATTCA-C--GAAAAACGATTTA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGC-GG-AAAAAAATGAAAGAATTTTTTT--TATTTTTTT
gi|5163 : TTTT-ATAAC--AAACAATCACTACCCGGAAGTTAAAGTCG-AAC--TTTTGCTCAATTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTGAAACTAACA-CTTATTAGCCGGGTCCAT--GTCAGT--GAA-------ACAC-A-TTT-T-CG-TCA-CACTGTCTC-CAGC-TCAATT-------TAT--AAACGAAAGTTGT----A----TATGTGCACAAT--CCG--TTACAGCAACAT----A--AA------AATGTG-A---------------TTTA--TTCATC-CTTCACAACGGATTTGCATTTTAAAACATTTG----GTCC---GACGTATTT-ATTAACCTT----------------TTA-TTGATCTAACATTTTTGTTCATTATTTTATTAGTGAAAATAAACCGCTTAAAAGTAATTCA-C--GAAAAACATTTCA-TTt
gi|5164 : TTTT-TTA-C--AAACAATCACCACCTGAAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAATTGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATGAGTCTGGTTTAT--TTCTCT--GCACCAATTTATAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAATAGCGATATACTAAAAAAAAATTTGTTTTGA----TATTTCCAGAA-----G---AACAGCAGAAT----AGCAA------AATGAA-A---------------TATT--TTCAT
gi|5165 : TTTT-TTA-C--AAGCAATCAGCACCCGGAAATTAAAGGGG-AAC--TTTATATCAATTCAACAAAAAGAAAATTCTC-A-TT-TT--T--CA-CCGACTTAACGTTCAAACTAACA-ATTAAGAGTCTGATTTAT--TTCTCT--GCATCATTTTCTAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAAT-------AGC--AA
gi|5166 : TTTT-TTA-C--AAACAATCACTACCCGAAGGTTAAAGGGG-AAC--GTTTTCTCATTTCACCAAAAGGAAAATACTC-G-TT-TTA-T--CA-CCGAATTTAACTTCAAACTAACA-ATTATTAGCCGAGTTCAA--GTCCAT--GTACCATTTTACACAT-TTT-T-TGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGATACTTGT----A----CACGTGCTCAAC--CCG--TCCCAGCAAAAT----G--AA------AATGAG-A---------------GTTT--TTCATCATTTCACCTTGGATTCGCATTGTAAAACAGTTT----GACT---GACGTATTTCGCTCGCCAA----------------CTACTTTATCGAACTTTTTTCTTCATAACTTTATCAGCGGAAATGATCCGCTGACGAGTTATTCA-C--GAAAAACGGTTCA-TTTTGCCAAACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGGAAAAAAAACGAAAGAATTTTATT--T-TTTTTTtatact
gi|5167 : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAATGGAAATTTCTA-A-TT-TT--T--C----------ACGTTCAAACTAACA-ATTATATGCTGGATTCAT--TTATCT--GCACCA-TTTACAC-C-TTC-T-TGTTC--T-GTGTCTT-AAG--TGAAATAGCGATATACTAAAAAAAAAATCAT----ATTTCCA---GCAGAACAGCAGAAT---AGCAGAAT----G--AA------AATTGG-AATAAAATGAAAGTTGTTTT--TTTATAACTT-ATTTTAG-TACACA-TGT-GAACATACCGGAAGTCTTAAGAAATATTTT-TTAACCAATTTTAACGCTAACCAATTACTTTATCTACCTTTTTTGTTCATTACTTGATCAGCGGAAATGATCCGCTTACAAGTTATTCA-C--GAAAAACGATTTA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-GAAAAAATGAAAG-ATTTTTTT--
gi|5168 : TTTT-ATAAC--AAACAATCACTACCCGGAAGTTAAAGTGG-AAC--TTTTGCTCATTTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTGAAACTAACA-CTTATTAGCCGGGTCCAC--GTCAGT--GAA-------ACAA-A-TTT-T-CG-TCA-TACTGTCTC-CAGC-TTAATT-------TAT--AAACGAAAGTTGT----A----TATGTGCACAAT--CCG--TTGCAGCAAAAT----A--AA------AATGTG-A---------------TTTA--TTCATCCTTTCACAACGGATTTGCATTTTAAAACATTTG----GTCC---GACGTATTT-ATTAACTTT----------------TTA-TTGATCTAACATTTTTGTTCATTACTTTATCAGTGAAAATAAACCGCTTAAAAGTTATTCA-C--GAAAAACATTTCA-TT
gi|5169 : TTTT-TTA-C--AAACAATCACCACCTGAAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAATTGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATGAGTCTGATTTATTGCTC--T--GCACAATTTTCTAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAAT-------T
gi|5170 : TTTT-TTA-C--AAACAATCACTACCCGAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATACTC-A-TT-TTA-T--CA-CCGAATCTA
gi|5171 : TTTTATTA-C--AAATAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTGCTCATTTCACCAAAAGGGAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTGAAACTAACA-CTTATTAGCCGGGTactt
gi|5172 : TTTT-TTA-C--AAGCAATCAGCACCCGGCAATTAAAGGGG-AAC--TTTTTATCAATTCACCTAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGACTTTACGTTCAAACTAACA-ATTATGAGTCTGATTTAT--TTCTCT--GCATCATTTTCTAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAATAGCAAAATAC--TAACAAATTTTTT----T----TATATATATA------T--TTCCAGCAGAACAACAG--AATAGCAGAATGAA-A---------------TATT--TTCAT
gi|5173 : TTTT-TTA-C--CAACAATCAACAACCGAAGGTTAAAGTTG-AAT--TTTTTTT
gi|5174 : TTTT-TTA-C--AAACAATCAATTCCCAAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAATGAAAATACTC-A-TT-TTA-T--CA-CCGAATTTACGTTCAAACTAACA-ATTATTAGCCGCATTCAT--CTCCAT--GTAACATTTTACAC-AGTCT-T-TGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGATACTTGT----A----CACGTGCACAAC--TTG--TTCCAGCAAAAT----G--AA------AATGAG-A---------------TTTT--TTCATCATTTCACCTTGGATTCTCATTGTAAAAGGTTTT----GCCT---GACGTACTTCGCTAACCAA----------------TTACTTTATCTAACTTTTT--TTCATTACTTGATCAGCAGAAATGATCCGATTATAAGTTATTCA-C--GAAAAACGATTCATTTTTGCCAGACTG
gi|5175 : TTTT-TTA-C--AA----TCAACAACCGAAGGTTAAAGGGG-AAT--TTTTTGTTATTTCACCAAATGGAAAATTCTC-A-TT-TTTTT--CA-CCGAATTGACGTTCAAACTAACA-ATTATTAGCTGAGTTCAC--CTCCAT--G-GCCATTTTAAACAT-TTT-T-TGTTCA-TACTGTGTT-CAGG-TAAAAT-------TAC--AAACAAAACTTTT----A----CACGTTCACAAC--CCG--TTCCAGCAACAT----G--AA------AAT--C-A---------------TTTT--TTCATCATTTCACCTTGGATTCGTAATGGAAAACGTTTT----GCCT---GACGTATTTCGCTAACCAA----------------TTA-TTTATCTAACTTTTTTATTCATTAATTGATCAGCGGAAATGATCCGCTTATAAGTTATTCA-C--GAAAAACGATTCA-TTTTGCCAGAC----CATTCCGCGAGAGT--GAGAAAAGTGGG-GGAAAAATGAAAG-ATTGTTTT--A-TTATT
gi|5176 : TTTT-TTA----AAACAATCACTACCCGAAGGTTAAAGGGGGAAC--TTTTTCTCATTTCACTAAAAGGAAAATACTC-A-TT-TCA-T--CA-CCGAATTTAATAGCAAACTAACG-ATAATTAGCCAAGTTCAT--TTCCAT--GTACCATTTTACAC-A-TTT-T-TTTTCA-TACTGTGTT-CAGC-TAAAAT-------TAT--AAACGAAACTTGT----A----CACGTGCACAAC--CTG--TTCCAGCAAAAT----G--AA------AATGAG-A---------------TTTT--TTCATCATTTCACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACGTTTATCGCTAACCAA---------------------TTAT--------TTTATCCA--ACTTT--------------TTTGCTCATTACTTGATCAGC--GGA--------CA-TTTTGCCAGGCTGCTCATTCCTCGAGAGT--GAGTAAA-TTGG-AAAAAAATGAAAGAATTTTTTT--T-gatttt
gi|5177 : TTTT-TTAAC--AAACAATCACTACCCAAAGTTTAAAGGGG-AAC--TTTTTCTTATTTGACCAAAAGGAAAATATTC-A-TTATA--T--CA-CC-AATTTACGTTCAAACTAATA-ATTATCAGCCGGATTTAT--TTCTCT--GCACCATTTTCCAC-C-TTT-T-TGTTC---AGTGTCTT-TAGC-AAAAA
gi|5178 : TTTTATTA-C--GAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTGACCAAAAGGAAAATTCTC-ATTT-TT--T--CA-CCGAATTTACGTTCACACTAACA-ATTATAAGCCGGATTagcaacatactt
gi|5179 : TTTTATTA-C--AAACAATCACTACCTTGAAGTTTAAGGGG-AAC--TTTTTCTCATTTCACCAAATGGAAAATTCTC-A-TT-TTT-T--CA-CCGAATTTACAATCAAACTAACA-ATTATATG-CGAGTTCAA--CTCCAT--GTACCATTTCACACAT-TTT-T-TGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CATGTGCACAAC--CCG--TTCCAGCAAAAT----G--AA------AATGAG-CT--------------TTTT--TTCATCGT-----------TTCGCATTGTTAAACATTTT----GCCT---GACGTATTTCGCAAACCAA----------------
gi|5180 : TTTT-TTA-C--AAACAATCACCACCCACAAGTTATAGGGG-AACCGTTTTTCTCATTTCACCAAAAGTAATATTATC-A-TT-TT--TTTCA-CCGATTTAACGTTCAAAGTAACA-ATTATAAGCAGGATTCA-----CCGT------CATGTAACA----------TGTTCAATA-TATTTT-CAGC-TAAAGT-------TTC--AAACGAAACTTGT----A----TATGTGCACAAT--CCG--TTCCAATGAAAT----G--AA------AGTGTG-A---------------TTTT--TTCATCGTTTCACCGTAGATTCGCATTGTAAAACATTAC----GCCT---GACGTATTCCTCTAACCAA----------------TAATTTTATATTACTTTT---CTTATTA-TTGAT
gi|5181 : TTTT-TTA-C--AAACAATCACTACTCAGAAATTAAAGGGG-AAC--TTTTTATCATTTCACCAAAACGAAAACTTTC-A-TT-TT--TA-TA-ACGAATCTACTTTCAAATTAACA-ATGCTTAGCCGGGTTCAC--CTCCAT--GTACCATTTTACAC-T-TTTCT-TGTTCA-TAATATATT-CAGA-TAAAGT-------TAC--AAACAAAAC--GT----A----CACTTGCACAAT--CCG--TTC
gi|5182 : TTGT-TTA-C--AAACAATCTTAACCCGAAAGTTAAAGGCG-AAC---TTTTCTAACTTTACCGAAATGGAAATTCTCAA-TT-TT--T--TA-CCTAATTCACGTTCAAATTAACAGATGACGGTCCGGATTCGC--CTCTCT--GCACCAGTTTATAC-C--TT-T-TGTTGA-CAGTGTCTT-AAGCATAA
gi|5183 : TTTT-TTA-C--AAGCAATCACTACCTGGAAGT--------------------------CACCAAAAGTAAACTT------TT-TC--T--CA-TCGCATTTACGTTCAAACTAACA-ATTATTAGCCATGTCCAT--CT--GTTCGCACCATTTAACAC-C-TTT-T-TGTTCA-
gi|5184 : TTTT-TTA-C--AAACAATCACCATCCGAAAGTTGAAGGGG-AAC--TTTTTCTCATTTCGCCAAATGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-AATATGAGCC
gi|5185 : TTTT-TTA------ACAATCACCACCCGAAAGTTA--GATG-AAC--TTTTTCTCATTTCACAAAATGGAAAAGTCTC-T-TT-TT--T--CA-CCGAATTTACGTTCAAACAAACA-ATTATGAGCCCGATTTAT--TTCTCT--GCACCATTTTCTAT-C-TTC-T-TGTT---TAGTGTCTG-AAGC--AAAAT-------AGC--AA
gi|5186 : TT-TTA-TTTAAACAATCACTACCCGGAAGTTAAAGAGG-AGT--TTTTTCTCATTTCACCAAATGGAAAATTCTA-A-TT-TT--T--CA-CCGAATTTATGTTCAAACTAAAA-ATTATAAGCCGAATACAT--TTC--T--GCACCATTTTCCAT-C-TCT-T-TGTTC---AGTGTCTTAAAG---AAAAT-------AGC--AAAtatact
gi|5187 : TT-TAA-C--AAACAATCACTACCCGGGATTTAAAGGTG-AAC--TTTTTCTCATTTCACAAAAAAGAAATTTCTC-A-TT-TT--T--AAGCCGAATatact
gi|5188 : --TTCTTCTCATTTCACCAAAAGGGAAATTCT--A-TT-TT--TTTCA-CCGTATTTACGTTCAAACTTACA-ATTATTAGCCTGGTTC-C--CTCCAT--GTACCATTTTACAC-CACTT-T-TGTTCA-TAATGTTTT-CAGC-TTAAAT-------TAC--AAACGAAACTT-T----A----AACGTATACAAT--CCG--TTCAACCAAAAT----G--AA------AATGTG-A---------------TTTTCCTTCATCGTTTCACCGTAGATTTGCATTGTAAAACAATTT----GCCT---GACGTATTTCGCTTACCAA----------------TTACTTTATGAAACTTTTT--TTCATTACTTTATCAGCGGAAATGATCCACTTATAAGTTATTTA-CAAAAAAAATGTTTCA-TTTTGCAAGACTGCTTATTCCGCAAAAGTCCGAGAAAAGTGAG-AAAAAAATGAAAGAA
gi|5189 : TACAC-CATTT-T-TGTTCA-TAATGTCTT-TAGC-TAAA-----------------TGA-----GC----A----CACGTACATAAC--GTG--TTTCAGCTTAAT----G--AT------CGTGCGTC---------------TTTT--TTCAT-GTTTC
gi|5190 : CGTATTTCGCTTACCAA----------------TTACTTTATCTAACATTTGTGTTCATTACTTCATCAGCGAAAATAATCCGCTTATAAGTTATTCA-C--GAAAAATCTTTCA-TTTTGACAGACAGCTCATTCGGCAA
gi|5191 : ATCTAACTTTTTTGTTCATTACTTGATCAGCGGAAATGATCCGCTTACATGTTATTCA-C--GAAAAACGATTTA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGG---AAAAAATGAAAGAATTTTTTTCAT-TTTTTTT
Alignments
lowQualScore : 11 11 111 1111111 11111111111 2222222222222222
lowQualScore : 4 4 22 1 11 1 1 1 22 55 1 1 1 5555 00 22 1 222 1 1 666 2 0 22 66 9999999 55 5555 5555 33 33 5555 66666666666 777777 1 2 8888 33 4 1 7777 555 0 0000000000000000 5 22 1 0 3 44 2 3 66 5 3 9999
lowQualScore : . . .. . .. . . . .. .. . . . .... .. .. . ... . . ... . . .. .. ....... .. .... .... .. .. .... ........... ...... . . .... .. . . .... ... . ................ . .. . . . .. . . .. . . ....
lowQualScore : 3 3 00 4 99 5 5 5 44 66 5 6 0 4444 22 55 5 222 7 7 333 8 5 44 22 5555555 88 3333 3333 44 44 7777 33333333333 777777 1 7 3333 77 4 3 1111 888 7 4444444444444444 9 55 0 8 3 66 2 3 99 0 2 9999
consensus : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATNAGCCGGGTTCAT--CTCCGT--GCACCATTTTACAC-C-TTT-T-TGTTCA-TANTGTCTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CACGTGCACAAC--CCG--TTCCAGCAAAAT----G-----------AA------AATGAG-A----TTTT--TTCATCGTTTCACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACGTATTTCGCTAACCAA----------------TTACTTTATCTAACTTTTTTGTTCATTACTTNATCAGCGGAAATGATCCGCTTACAAGTTATTCA-C--GAAAAACGNTTCA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-AAAAAAATGAAAGAATTTTTTT--T-TTTTTTT
Reference ( family-625 ) : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATNAGCCGGGTTCAT--CTCCGT--GCACCATTTTACAC-C-TTT-T-TGTTCA-TANTGTCTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CACGTGCACAAC--CCG--TTCCAGCAAAAT----G-----------AA------AATGAG-A----TTTT--TTCATCGTTTCACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACGTATTTCGCTAACCAA----------------TTACTTTATCTAACTTTTTTGTTCATTACTTNATCAGCGGAAATGATCCGCTTACAAGTTATTCA-C--GAAAAACGNTTCA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-AAAAAAATGAAAGAATTTTTTT--T-TTTTTTT
gi|5160 : TTTT-TTA-C--AAACAATCACTACCCGAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATACTC-A-TT-TTA-T--CA-CCGAATTTAACTTCAAACTAACA-ATTATTAGCCGAGTTCAA--GTCCAT--GTACCATTTTACAC-A-TTT-TCTGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGATACTTGT----A----CACGTGCTCAAC--CCG--TCCCAGCAAAAT----G-----------AA------AATGAG-A----GTTT--TTCATCATTTCACCTTGGATTCGCATTGTAAAACAGTTT----GACT---GACGTATTTCGCTCGCCAA----------------CTACTTTATCGAACTTTTTTCTTCATAACTTTATCAGCGGAAATGATCCGCTGACGAGTTATTCA-C--GAAAAACGGTTCA-TTTTGCCAAACTGCTCATTCCGCGAGAGT--GAAAAAAGTGGG-AAAAAAACGAAAGAATTTTTTT--T-TTTTTTT
gi|5161 : TTTT-TTA-C--CAACAATCAACAACCGAAGGTTAAAGTTG-AAT--TTTTTTT
gi|5162 : TTTT-TTA-C--AAACAATCATTACCCGAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCGAAAGGAAAATACTC-A-TT-TTA-T--CA-CCGAATTCAACTTCAAACTAACA-ATTATTAGCCGAGTTCAA--CTCCTT--GTACCATTTTACACAT-TTT-T-TGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CACGTGCACAAC--CCG--TTCCAGCAAATT----G-----------AA------AATGAG-A----TATT--TACATCATATAACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACATATTTCGCTTACCAA----------------TTACTTTGTCTAACTTTTTTGTTCATTACTTGATCAGCGGAAATGATCCGCTTACATGTTATTCA-C--GAAAAACGATTTA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGC-GG-AAAAAAATGAAAGAATTTTTTT--TATTTTTTT
gi|5163 : TTTT-ATAAC--AAACAATCACTACCCGGAAGTTAAAGTCG-AAC--TTTTGCTCAATTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTGAAACTAACA-CTTATTAGCCGGGTCCAT--GTCAGT--GAA-------ACAC-A-TTT-T-CG-TCA-CACTGTCTC-CAGC-TCAATT-------TAT--AAACGAAAGTTGT----A----TATGTGCACAAT--CCG--TTACAGCAACAT----A-----------AA------AATGTG-A----TTTA--TTCATC-CTTCACAACGGATTTGCATTTTAAAACATTTG----GTCC---GACGTATTT-ATTAACCTT----------------TTA-TTGATCTAACATTTTTGTTCATTATTTTATTAGTGAAAATAAACCGCTTAAAAGTAATTCA-C--GAAAAACATTTCA-TTt
gi|5164 : TTTT-TTA-C--AAACAATCACCACCTGAAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAATTGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATGAGTCTGGTTTAT--TTCTCT--GCACCAATTTATAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAATAGCGATATACTAAAAAAAAATTTGTTTTGA----TATTTCCAGAA-----G---AACAGCAGAAT----AGC---------AA------AATGAA-A----TATT--TTCAT
gi|5165 : TTTT-TTA-C--AAGCAATCAGCACCCGGAAATTAAAGGGG-AAC--TTTATATCAATTCAACAAAAAGAAAATTCTC-A-TT-TT--T--CA-CCGACTTAACGTTCAAACTAACA-ATTAAGAGTCTGATTTAT--TTCTCT--GCATCATTTTCTAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAAT-------AGC--AA
gi|5166 : TTTT-TTA-C--AAACAATCACTACCCGAAGGTTAAAGGGG-AAC--GTTTTCTCATTTCACCAAAAGGAAAATACTC-G-TT-TTA-T--CA-CCGAATTTAACTTCAAACTAACA-ATTATTAGCCGAGTTCAA--GTCCAT--GTACCATTTTACACAT-TTT-T-TGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGATACTTGT----A----CACGTGCTCAAC--CCG--TCCCAGCAAAAT----G-----------AA------AATGAG-A----GTTT--TTCATCATTTCACCTTGGATTCGCATTGTAAAACAGTTT----GACT---GACGTATTTCGCTCGCCAA----------------CTACTTTATCGAACTTTTTTCTTCATAACTTTATCAGCGGAAATGATCCGCTGACGAGTTATTCA-C--GAAAAACGGTTCA-TTTTGCCAAACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGGAAAAAAAACGAAAGAATTTTATT--T-TTTTTTtatact
gi|5167 : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAATGGAAATTTCTA-A-TT-TT--T--C----------ACGTTCAAACTAACA-ATTATATGCTGGATTCAT--TTATCT--GCACCA-TTTACAC-C-TTC-T-TGTTC--T-GTGTCTT-AAG--TGAAATAGCGATATACTAAAAAAAAAATCAT----ATTTCCA---GCAGAACAGCAGAAT---AGCAGAAT----GAAAATTGGAATAA------AATGAA-AGTTGTTTT--TTTATAACTT-ATTTTAG-TACACA-TGT-GAACATACCGGAAGTCTTAAGAAATATTTT-TTAACCAATTTTAACGCTAACCAATTACTTTATCTACCTTTTTTGTTCATTACTTGATCAGCGGAAATGATCCGCTTACAAGTTATTCA-C--GAAAAACGATTTA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-GAAAAAATGAAAG-ATTTTTTT--
gi|5168 : TTTT-ATAAC--AAACAATCACTACCCGGAAGTTAAAGTGG-AAC--TTTTGCTCATTTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTGAAACTAACA-CTTATTAGCCGGGTCCAC--GTCAGT--GAA-------ACAA-A-TTT-T-CG-TCA-TACTGTCTC-CAGC-TTAATT-------TAT--AAACGAAAGTTGT----A----TATGTGCACAAT--CCG--TTGCAGCAAAAT----A-----------AA------AATGTG-A----TTTA--TTCATCCTTTCACAACGGATTTGCATTTTAAAACATTTG----GTCC---GACGTATTT-ATTAACTTT----------------TTA-TTGATCTAACATTTTTGTTCATTACTTTATCAGTGAAAATAAACCGCTTAAAAGTTATTCA-C--GAAAAACATTTCA-TT
gi|5169 : TTTT-TTA-C--AAACAATCACCACCTGAAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAATTGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATGAGTCTGATTTATTGCTC--T--GCACAATTTTCTAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAAT-------T
gi|5170 : TTTT-TTA-C--AAACAATCACTACCCGAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATACTC-A-TT-TTA-T--CA-CCGAATCTA
gi|5171 : TTTTATTA-C--AAATAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTGCTCATTTCACCAAAAGGGAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTGAAACTAACA-CTTATTAGCCGGGTactt
gi|5172 : TTTT-TTA-C--AAGCAATCAGCACCCGGCAATTAAAGGGG-AAC--TTTTTATCAATTCACCTAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGACTTTACGTTCAAACTAACA-ATTATGAGTCTGATTTAT--TTCTCT--GCATCATTTTCTAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAATAGCAAAATAC--TAACAAATTTTTT----T----TATATATATA------T--TTCCAGCAGAACAACAG-----------AATAGCAGAATGAA-A----TATT--TTCAT
gi|5173 : TTTT-TTA-C--CAACAATCAACAACCGAAGGTTAAAGTTG-AAT--TTTTTTT
gi|5174 : TTTT-TTA-C--AAACAATCAATTCCCAAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAATGAAAATACTC-A-TT-TTA-T--CA-CCGAATTTACGTTCAAACTAACA-ATTATTAGCCGCATTCAT--CTCCAT--GTAACATTTTACAC-AGTCT-T-TGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGATACTTGT----A----CACGTGCACAAC--TTG--TTCCAGCAAAAT----G-----------AA------AATGAG-A----TTTT--TTCATCATTTCACCTTGGATTCTCATTGTAAAAGGTTTT----GCCT---GACGTACTTCGCTAACCAA----------------TTACTTTATCTAACTTTTT--TTCATTACTTGATCAGCAGAAATGATCCGATTATAAGTTATTCA-C--GAAAAACGATTCATTTTTGCCAGACTG
gi|5175 : TTTT-TTA-C--AA----TCAACAACCGAAGGTTAAAGGGG-AAT--TTTTTGTTATTTCACCAAATGGAAAATTCTC-A-TT-TTTTT--CA-CCGAATTGACGTTCAAACTAACA-ATTATTAGCTGAGTTCAC--CTCCAT--G-GCCATTTTAAACAT-TTT-T-TGTTCA-TACTGTGTT-CAGG-TAAAAT-------TAC--AAACAAAACTTTT----A----CACGTTCACAAC--CCG--TTCCAGCAACAT----G-----------AA------AAT--C-A----TTTT--TTCATCATTTCACCTTGGATTCGTAATGGAAAACGTTTT----GCCT---GACGTATTTCGCTAACCAA----------------TTA-TTTATCTAACTTTTTTATTCATTAATTGATCAGCGGAAATGATCCGCTTATAAGTTATTCA-C--GAAAAACGATTCA-TTTTGCCAGAC----CATTCCGCGAGAGT--GAGAAAAGTGGG-GGAAAAATGAAAG-ATTGTTTT--A-TTATT
gi|5176 : TTTT-TTA----AAACAATCACTACCCGAAGGTTAAAGGGGGAAC--TTTTTCTCATTTCACTAAAAGGAAAATACTC-A-TT-TCA-T--CA-CCGAATTTAATAGCAAACTAACG-ATAATTAGCCAAGTTCAT--TTCCAT--GTACCATTTTACAC-A-TTT-T-TTTTCA-TACTGTGTT-CAGC-TAAAAT-------TAT--AAACGAAACTTGT----A----CACGTGCACAAC--CTG--TTCCAGCAAAAT----G-----------AA------AATGAG-A----TTTT--TTCATCATTTCACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACGTTTATCGCTAACCAA---------------------TTAT--------TTTATCCA--ACTTT--------------TTTGCTCATTACTTGATCAGC--GGA--------CA-TTTTGCCAGGCTGCTCATTCCTCGAGAGT--GAGTAAA-TTGG-AAAAAAATGAAAGAATTTTTTT--T-gatttt
gi|5177 : TTTT-TTAAC--AAACAATCACTACCCAAAGTTTAAAGGGG-AAC--TTTTTCTTATTTGACCAAAAGGAAAATATTC-A-TTATA--T--CA-CC-AATTTACGTTCAAACTAATA-ATTATCAGCCGGATTTAT--TTCTCT--GCACCATTTTCCAC-C-TTT-T-TGTTC---AGTGTCTT-TAGC-AAAAA
gi|5178 : TTTTATTA-C--GAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTGACCAAAAGGAAAATTCTC-ATTT-TT--T--CA-CCGAATTTACGTTCACACTAACA-ATTATAAGCCGGATTagcaacatactt
gi|5179 : TTTTATTA-C--AAACAATCACTACCTTGAAGTTTAAGGGG-AAC--TTTTTCTCATTTCACCAAATGGAAAATTCTC-A-TT-TTT-T--CA-CCGAATTTACAATCAAACTAACA-ATTATATG-CGAGTTCAA--CTCCAT--GTACCATTTCACACAT-TTT-T-TGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CATGTGCACAAC--CCG--TTCCAGCAAAAT----G-----------AA------AATGAG-CT---TTTT--TTCATCGT-----------TTCGCATTGTTAAACATTTT----GCCT---GACGTATTTCGCAAACCAA----------------
gi|5180 : TTTT-TTA-C--AAACAATCACCACCCACAAGTTATAGGGG-AACCGTTTTTCTCATTTCACCAAAAGTAATATTATC-A-TT-TT--TTTCA-CCGATTTAACGTTCAAAGTAACA-ATTATAAGCAGGATTCA-----CCGT------CATGTAACA----------TGTTCAATA-TATTTT-CAGC-TAAAGT-------TTC--AAACGAAACTTGT----A----TATGTGCACAAT--CCG--TTCCAATGAAAT----G-----------AA------AGTGTG-A----TTTT--TTCATCGTTTCACCGTAGATTCGCATTGTAAAACATTAC----GCCT---GACGTATTCCTCTAACCAA----------------TAATTTTATATTACTTTT---CTTATTA-TTGAT
gi|5181 : TTTT-TTA-C--AAACAATCACTACTCAGAAATTAAAGGGG-AAC--TTTTTATCATTTCACCAAAACGAAAACTTTC-A-TT-TT--TA-TA-ACGAATCTACTTTCAAATTAACA-ATGCTTAGCCGGGTTCAC--CTCCAT--GTACCATTTTACAC-T-TTTCT-TGTTCA-TAATATATT-CAGA-TAAAGT-------TAC--AAACAAAAC--GT----A----CACTTGCACAAT--CCG--TTC
gi|5182 : TTGT-TTA-C--AAACAATCTTAACCCGAAAGTTAAAGGCG-AAC---TTTTCTAACTTTACCGAAATGGAAATTCTCAA-TT-TT--T--TA-CCTAATTCACGTTCAAATTAACAGATGACGGTCCGGATTCGC--CTCTCT--GCACCAGTTTATAC-C--TT-T-TGTTGA-CAGTGTCTT-AAGCATAA
gi|5183 : TTTT-TTA-C--AAGCAATCACTACCTGGAAGT--------------------------CACCAAAAGTAAACTT------TT-TC--T--CA-TCGCATTTACGTTCAAACTAACA-ATTATTAGCCATGTCCAT--CT--GTTCGCACCATTTAACAC-C-TTT-T-TGTTCA-
gi|5184 : TTTT-TTA-C--AAACAATCACCATCCGAAAGTTGAAGGGG-AAC--TTTTTCTCATTTCGCCAAATGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-AATATGAGCC
gi|5185 : TTTT-TTA------ACAATCACCACCCGAAAGTTA--GATG-AAC--TTTTTCTCATTTCACAAAATGGAAAAGTCTC-T-TT-TT--T--CA-CCGAATTTACGTTCAAACAAACA-ATTATGAGCCCGATTTAT--TTCTCT--GCACCATTTTCTAT-C-TTC-T-TGTT---TAGTGTCTG-AAGC--AAAAT-------AGC--AA
gi|5186 : TT-TTA-TTTAAACAATCACTACCCGGAAGTTAAAGAGG-AGT--TTTTTCTCATTTCACCAAATGGAAAATTCTA-A-TT-TT--T--CA-CCGAATTTATGTTCAAACTAAAA-ATTATAAGCCGAATACAT--TTC--T--GCACCATTTTCCAT-C-TCT-T-TGTTC---AGTGTCTTAAAG---AAAAT-------AGC--AAAtatact
gi|5187 : TT-TAA-C--AAACAATCACTACCCGGGATTTAAAGGTG-AAC--TTTTTCTCATTTCACAAAAAAGAAATTTCTC-A-TT-TT--T--AAGCCGAATatact
gi|5188 : --TTCTTCTCATTTCACCAAAAGGGAAATTCT--A-TT-TT--TTTCA-CCGTATTTACGTTCAAACTTACA-ATTATTAGCCTGGTTC-C--CTCCAT--GTACCATTTTACAC-CACTT-T-TGTTCA-TAATGTTTT-CAGC-TTAAAT-------TAC--AAACGAAACTT-T----A----AACGTATACAAT--CCG--TTCAACCAAAAT----G-----------AA------AATGTG-A----TTTTCCTTCATCGTTTCACCGTAGATTTGCATTGTAAAACAATTT----GCCT---GACGTATTTCGCTTACCAA----------------TTACTTTATGAAACTTTTT--TTCATTACTTTATCAGCGGAAATGATCCACTTATAAGTTATTTA-CAAAAAAAATGTTTCA-TTTTGCAAGACTGCTTATTCCGCAAAAGTCCGAGAAAAGTGAG-AAAAAAATGAAAGAA
gi|5189 : TACAC-CATTT-T-TGTTCA-TAATGTCTT-TAGC-TAAA-----------------TGA-----GC----A----CACGTACATAAC--GTG--TTTCAGCTTAAT----G-----------AT------CGTGCGTC----TTTT--TTCAT-GTTTC
gi|5190 : CGTATTTCGCTTACCAA----------------TTACTTTATCTAACATTTGTGTTCATTACTTCATCAGCGAAAATAATCCGCTTATAAGTTATTCA-C--GAAAAATCTTTCA-TTTTGACAGACAGCTCATTCGGCAA
gi|5191 : ATCTAACTTTTTTGTTCATTACTTGATCAGCGGAAATGATCCGCTTACATGTTATTCA-C--GAAAAACGATTTA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGG---AAAAAATGAAAGAATTTTTTTCAT-TTTTTTT
Alignments
lowQualScore : 11 11 111 1111111 11111111111 2222222222222222
lowQualScore : 4 4 22 1 11 1 1 1 22 55 1 1 1 5555 00 22 1 222 1 1 666 2 0 22 66 9999999 55 5555 5555 33 33 5555 66666666666 777777 1 2 8888 33 4 1 7777 555 0 0000000000000000 5 22 1 0 3 44 2 3 66 5 3 9999
lowQualScore : . . .. . .. . . . .. .. . . . .... .. .. . ... . . ... . . .. .. ....... .. .... .... .. .. .... ........... ...... . . .... .. . . .... ... . ................ . .. . . . .. . . .. . . ....
lowQualScore : 3 3 00 4 99 5 5 5 44 66 5 6 0 4444 22 55 5 222 7 7 333 8 5 44 22 5555555 88 3333 3333 44 44 7777 33333333333 777777 1 7 3333 77 4 3 1111 888 7 4444444444444444 9 55 0 8 3 66 2 3 99 0 2 9999
consensus : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATNAGCCGGGTTCAT--CTCCGT--GCACCATTTTACAC-C-TTT-T-TGTTCA-TANTGTCTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CACGTGCACAAC--CCG--TTCCAGCAAAAT----G-----------AA------AATGAG-A----TTTT--TTCATCGTTTCACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACGTATTTCGCTAACCAA----------------TTACTTTATCTAACTTTTTTGTTCATTACTTNATCAGCGGAAATGATCCGCTTACAAGTTATTCA-C--GAAAAACGNTTCA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-AAAAAAATGAAAGAATTTTTTT--T-TTTTTTT
Reference ( family-625 ) : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATNAGCCGGGTTCAT--CTCCGT--GCACCATTTTACAC-C-TTT-T-TGTTCA-TANTGTCTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CACGTGCACAAC--CCG--TTCCAGCAAAAT----G-----------AA------AATGAG-A----TTTT--TTCATCGTTTCACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACGTATTTCGCTAACCAA----------------TTACTTTATCTAACTTTTTTGTTCATTACTTNATCAGCGGAAATGATCCGCTTACAAGTTATTCA-C--GAAAAACGNTTCA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-AAAAAAATGAAAGAATTTTTTT--T-TTTTTTT
gi|5160 : TTTT-TTA-C--AAACAATCACTACCCGAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATACTC-A-TT-TTA-T--CA-CCGAATTTAACTTCAAACTAACA-ATTATTAGCCGAGTTCAA--GTCCAT--GTACCATTTTACAC-A-TTT-TCTGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGATACTTGT----A----CACGTGCTCAAC--CCG--TCCCAGCAAAAT----G-----------AA------AATGAG-A----GTTT--TTCATCATTTCACCTTGGATTCGCATTGTAAAACAGTTT----GACT---GACGTATTTCGCTCGCCAA----------------CTACTTTATCGAACTTTTTTCTTCATAACTTTATCAGCGGAAATGATCCGCTGACGAGTTATTCA-C--GAAAAACGGTTCA-TTTTGCCAAACTGCTCATTCCGCGAGAGT--GAAAAAAGTGGG-AAAAAAACGAAAGAATTTTTTT--T-TTTTTTT
gi|5161 : TTTT-TTA-C--CAACAATCAACAACCGAAGGTTAAAGTTG-AAT--TTTTTTT
gi|5162 : TTTT-TTA-C--AAACAATCATTACCCGAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCGAAAGGAAAATACTC-A-TT-TTA-T--CA-CCGAATTCAACTTCAAACTAACA-ATTATTAGCCGAGTTCAA--CTCCTT--GTACCATTTTACACAT-TTT-T-TGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CACGTGCACAAC--CCG--TTCCAGCAAATT----G-----------AA------AATGAG-A----TATT--TACATCATATAACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACATATTTCGCTTACCAA----------------TTACTTTGTCTAACTTTTTTGTTCATTACTTGATCAGCGGAAATGATCCGCTTACATGTTATTCA-C--GAAAAACGATTTA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGC-GG-AAAAAAATGAAAGAATTTTTTT--TATTTTTTT
gi|5163 : TTTT-ATAAC--AAACAATCACTACCCGGAAGTTAAAGTCG-AAC--TTTTGCTCAATTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTGAAACTAACA-CTTATTAGCCGGGTCCAT--GTCAGT--GAA-------ACAC-A-TTT-T-CG-TCA-CACTGTCTC-CAGC-TCAATT-------TAT--AAACGAAAGTTGT----A----TATGTGCACAAT--CCG--TTACAGCAACAT----A-----------AA------AATGTG-A----TTTA--TTCATC-CTTCACAACGGATTTGCATTTTAAAACATTTG----GTCC---GACGTATTT-ATTAACCTT----------------TTA-TTGATCTAACATTTTTGTTCATTATTTTATTAGTGAAAATAAACCGCTTAAAAGTAATTCA-C--GAAAAACATTTCA-TTt
gi|5164 : TTTT-TTA-C--AAACAATCACCACCTGAAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAATTGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATGAGTCTGGTTTAT--TTCTCT--GCACCAATTTATAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAATAGCGATATACTAAAAAAAAATTTGTTTTGA----TATTTCCAGAA-----G---AACAGCAGAAT----AGC---------AA------AATGAA-A----TATT--TTCAT
gi|5165 : TTTT-TTA-C--AAGCAATCAGCACCCGGAAATTAAAGGGG-AAC--TTTATATCAATTCAACAAAAAGAAAATTCTC-A-TT-TT--T--CA-CCGACTTAACGTTCAAACTAACA-ATTAAGAGTCTGATTTAT--TTCTCT--GCATCATTTTCTAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAAT-------AGC--AA
gi|5166 : TTTT-TTA-C--AAACAATCACTACCCGAAGGTTAAAGGGG-AAC--GTTTTCTCATTTCACCAAAAGGAAAATACTC-G-TT-TTA-T--CA-CCGAATTTAACTTCAAACTAACA-ATTATTAGCCGAGTTCAA--GTCCAT--GTACCATTTTACACAT-TTT-T-TGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGATACTTGT----A----CACGTGCTCAAC--CCG--TCCCAGCAAAAT----G-----------AA------AATGAG-A----GTTT--TTCATCATTTCACCTTGGATTCGCATTGTAAAACAGTTT----GACT---GACGTATTTCGCTCGCCAA----------------CTACTTTATCGAACTTTTTTCTTCATAACTTTATCAGCGGAAATGATCCGCTGACGAGTTATTCA-C--GAAAAACGGTTCA-TTTTGCCAAACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGGAAAAAAAACGAAAGAATTTTATT--T-TTTTTTtatact
gi|5167 : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAATGGAAATTTCTA-A-TT-TT--T--C----------ACGTTCAAACTAACA-ATTATATGCTGGATTCAT--TTATCT--GCACCA-TTTACAC-C-TTC-T-TGTTC--T-GTGTCTT-AAG--TGAAATAGCGATATACTAAAAAAAAAATCAT----ATTTCCA---GCAGAACAGCAGAAT---AGCAGAAT----GAAAATTGGAATAA------AATGAA-AGTTGTTTT--TTTATAACTT-ATTTTAG-TACACA-TGT-GAACATACCGGAAGTCTTAAGAAATATTTT-TTAACCAATTTTAACGCTAACCAATTACTTTATCTACCTTTTTTGTTCATTACTTGATCAGCGGAAATGATCCGCTTACAAGTTATTCA-C--GAAAAACGATTTA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-GAAAAAATGAAAG-ATTTTTTT--
gi|5168 : TTTT-ATAAC--AAACAATCACTACCCGGAAGTTAAAGTGG-AAC--TTTTGCTCATTTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTGAAACTAACA-CTTATTAGCCGGGTCCAC--GTCAGT--GAA-------ACAA-A-TTT-T-CG-TCA-TACTGTCTC-CAGC-TTAATT-------TAT--AAACGAAAGTTGT----A----TATGTGCACAAT--CCG--TTGCAGCAAAAT----A-----------AA------AATGTG-A----TTTA--TTCATCCTTTCACAACGGATTTGCATTTTAAAACATTTG----GTCC---GACGTATTT-ATTAACTTT----------------TTA-TTGATCTAACATTTTTGTTCATTACTTTATCAGTGAAAATAAACCGCTTAAAAGTTATTCA-C--GAAAAACATTTCA-TT
gi|5169 : TTTT-TTA-C--AAACAATCACCACCTGAAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAATTGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATGAGTCTGATTTATTGCTC--T--GCACAATTTTCTAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAAT-------T
gi|5170 : TTTT-TTA-C--AAACAATCACTACCCGAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATACTC-A-TT-TTA-T--CA-CCGAATCTA
gi|5171 : TTTTATTA-C--AAATAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTGCTCATTTCACCAAAAGGGAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTGAAACTAACA-CTTATTAGCCGGGTactt
gi|5172 : TTTT-TTA-C--AAGCAATCAGCACCCGGCAATTAAAGGGG-AAC--TTTTTATCAATTCACCTAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGACTTTACGTTCAAACTAACA-ATTATGAGTCTGATTTAT--TTCTCT--GCATCATTTTCTAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAATAGCAAAATAC--TAACAAATTTTTT----T----TATATATATA------T--TTCCAGCAGAACAACAG-----------AATAGCAGAATGAA-A----TATT--TTCAT
gi|5173 : TTTT-TTA-C--CAACAATCAACAACCGAAGGTTAAAGTTG-AAT--TTTTTTT
gi|5174 : TTTT-TTA-C--AAACAATCAATTCCCAAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAATGAAAATACTC-A-TT-TTA-T--CA-CCGAATTTACGTTCAAACTAACA-ATTATTAGCCGCATTCAT--CTCCAT--GTAACATTTTACAC-AGTCT-T-TGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGATACTTGT----A----CACGTGCACAAC--TTG--TTCCAGCAAAAT----G-----------AA------AATGAG-A----TTTT--TTCATCATTTCACCTTGGATTCTCATTGTAAAAGGTTTT----GCCT---GACGTACTTCGCTAACCAA----------------TTACTTTATCTAACTTTTT--TTCATTACTTGATCAGCAGAAATGATCCGATTATAAGTTATTCA-C--GAAAAACGATTCATTTTTGCCAGACTG
gi|5175 : TTTT-TTA-C--AA----TCAACAACCGAAGGTTAAAGGGG-AAT--TTTTTGTTATTTCACCAAATGGAAAATTCTC-A-TT-TTTTT--CA-CCGAATTGACGTTCAAACTAACA-ATTATTAGCTGAGTTCAC--CTCCAT--G-GCCATTTTAAACAT-TTT-T-TGTTCA-TACTGTGTT-CAGG-TAAAAT-------TAC--AAACAAAACTTTT----A----CACGTTCACAAC--CCG--TTCCAGCAACAT----G-----------AA------AAT--C-A----TTTT--TTCATCATTTCACCTTGGATTCGTAATGGAAAACGTTTT----GCCT---GACGTATTTCGCTAACCAA----------------TTA-TTTATCTAACTTTTTTATTCATTAATTGATCAGCGGAAATGATCCGCTTATAAGTTATTCA-C--GAAAAACGATTCA-TTTTGCCAGAC----CATTCCGCGAGAGT--GAGAAAAGTGGG-GGAAAAATGAAAG-ATTGTTTT--A-TTATT
gi|5176 : TTTT-TTA----AAACAATCACTACCCGAAGGTTAAAGGGGGAAC--TTTTTCTCATTTCACTAAAAGGAAAATACTC-A-TT-TCA-T--CA-CCGAATTTAATAGCAAACTAACG-ATAATTAGCCAAGTTCAT--TTCCAT--GTACCATTTTACAC-A-TTT-T-TTTTCA-TACTGTGTT-CAGC-TAAAAT-------TAT--AAACGAAACTTGT----A----CACGTGCACAAC--CTG--TTCCAGCAAAAT----G-----------AA------AATGAG-A----TTTT--TTCATCATTTCACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACGTTTATCGCTAACCAA---------------------TTAT--------TTTATCCA--ACTTT--------------TTTGCTCATTACTTGATCAGC--GGA--------CA-TTTTGCCAGGCTGCTCATTCCTCGAGAGT--GAGTAAA-TTGG-AAAAAAATGAAAGAATTTTTTT--T-gatttt
gi|5177 : TTTT-TTAAC--AAACAATCACTACCCAAAGTTTAAAGGGG-AAC--TTTTTCTTATTTGACCAAAAGGAAAATATTC-A-TTATA--T--CA-CC-AATTTACGTTCAAACTAATA-ATTATCAGCCGGATTTAT--TTCTCT--GCACCATTTTCCAC-C-TTT-T-TGTTC---AGTGTCTT-TAGC-AAAAA
gi|5178 : TTTTATTA-C--GAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTGACCAAAAGGAAAATTCTC-ATTT-TT--T--CA-CCGAATTTACGTTCACACTAACA-ATTATAAGCCGGATTagcaacatactt
gi|5179 : TTTTATTA-C--AAACAATCACTACCTTGAAGTTTAAGGGG-AAC--TTTTTCTCATTTCACCAAATGGAAAATTCTC-A-TT-TTT-T--CA-CCGAATTTACAATCAAACTAACA-ATTATATG-CGAGTTCAA--CTCCAT--GTACCATTTCACACAT-TTT-T-TGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CATGTGCACAAC--CCG--TTCCAGCAAAAT----G-----------AA------AATGAG-CT---TTTT--TTCATCGT-----------TTCGCATTGTTAAACATTTT----GCCT---GACGTATTTCGCAAACCAA----------------
gi|5180 : TTTT-TTA-C--AAACAATCACCACCCACAAGTTATAGGGG-AACCGTTTTTCTCATTTCACCAAAAGTAATATTATC-A-TT-TT--TTTCA-CCGATTTAACGTTCAAAGTAACA-ATTATAAGCAGGATTCA-----CCGT------CATGTAACA----------TGTTCAATA-TATTTT-CAGC-TAAAGT-------TTC--AAACGAAACTTGT----A----TATGTGCACAAT--CCG--TTCCAATGAAAT----G-----------AA------AGTGTG-A----TTTT--TTCATCGTTTCACCGTAGATTCGCATTGTAAAACATTAC----GCCT---GACGTATTCCTCTAACCAA----------------TAATTTTATATTACTTTT---CTTATTA-TTGAT
gi|5181 : TTTT-TTA-C--AAACAATCACTACTCAGAAATTAAAGGGG-AAC--TTTTTATCATTTCACCAAAACGAAAACTTTC-A-TT-TT--TA-TA-ACGAATCTACTTTCAAATTAACA-ATGCTTAGCCGGGTTCAC--CTCCAT--GTACCATTTTACAC-T-TTTCT-TGTTCA-TAATATATT-CAGA-TAAAGT-------TAC--AAACAAAAC--GT----A----CACTTGCACAAT--CCG--TTC
gi|5182 : TTGT-TTA-C--AAACAATCTTAACCCGAAAGTTAAAGGCG-AAC---TTTTCTAACTTTACCGAAATGGAAATTCTCAA-TT-TT--T--TA-CCTAATTCACGTTCAAATTAACAGATGACGGTCCGGATTCGC--CTCTCT--GCACCAGTTTATAC-C--TT-T-TGTTGA-CAGTGTCTT-AAGCATAA
gi|5183 : TTTT-TTA-C--AAGCAATCACTACCTGGAAGT--------------------------CACCAAAAGTAAACTT------TT-TC--T--CA-TCGCATTTACGTTCAAACTAACA-ATTATTAGCCATGTCCAT--CT--GTTCGCACCATTTAACAC-C-TTT-T-TGTTCA-
gi|5184 : TTTT-TTA-C--AAACAATCACCATCCGAAAGTTGAAGGGG-AAC--TTTTTCTCATTTCGCCAAATGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-AATATGAGCC
gi|5185 : TTTT-TTA------ACAATCACCACCCGAAAGTTA--GATG-AAC--TTTTTCTCATTTCACAAAATGGAAAAGTCTC-T-TT-TT--T--CA-CCGAATTTACGTTCAAACAAACA-ATTATGAGCCCGATTTAT--TTCTCT--GCACCATTTTCTAT-C-TTC-T-TGTT---TAGTGTCTG-AAGC--AAAAT-------AGC--AA
gi|5186 : TT-TTA-TTTAAACAATCACTACCCGGAAGTTAAAGAGG-AGT--TTTTTCTCATTTCACCAAATGGAAAATTCTA-A-TT-TT--T--CA-CCGAATTTATGTTCAAACTAAAA-ATTATAAGCCGAATACAT--TTC--T--GCACCATTTTCCAT-C-TCT-T-TGTTC---AGTGTCTTAAAG---AAAAT-------AGC--AAAtatact
gi|5187 : TT-TAA-C--AAACAATCACTACCCGGGATTTAAAGGTG-AAC--TTTTTCTCATTTCACAAAAAAGAAATTTCTC-A-TT-TT--T--AAGCCGAATatact
gi|5188 : --TTCTTCTCATTTCACCAAAAGGGAAATTCT--A-TT-TT--TTTCA-CCGTATTTACGTTCAAACTTACA-ATTATTAGCCTGGTTC-C--CTCCAT--GTACCATTTTACAC-CACTT-T-TGTTCA-TAATGTTTT-CAGC-TTAAAT-------TAC--AAACGAAACTT-T----A----AACGTATACAAT--CCG--TTCAACCAAAAT----G-----------AA------AATGTG-A----TTTTCCTTCATCGTTTCACCGTAGATTTGCATTGTAAAACAATTT----GCCT---GACGTATTTCGCTTACCAA----------------TTACTTTATGAAACTTTTT--TTCATTACTTTATCAGCGGAAATGATCCACTTATAAGTTATTTA-CAAAAAAAATGTTTCA-TTTTGCAAGACTGCTTATTCCGCAAAAGTCCGAGAAAAGTGAG-AAAAAAATGAAAGAA
gi|5189 : TACAC-CATTT-T-TGTTCA-TAATGTCTT-TAGC-TAAA-----------------TGA-----GC----A----CACGTACATAAC--GTG--TTTCAGCTTAAT----G-----------AT------CGTGCGTC----TTTT--TTCAT-GTTTC
gi|5190 : CGTATTTCGCTTACCAA----------------TTACTTTATCTAACATTTGTGTTCATTACTTCATCAGCGAAAATAATCCGCTTATAAGTTATTCA-C--GAAAAATCTTTCA-TTTTGACAGACAGCTCATTCGGCAA
gi|5191 : ATCTAACTTTTTTGTTCATTACTTGATCAGCGGAAATGATCCGCTTACATGTTATTCA-C--GAAAAACGATTTA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGG---AAAAAATGAAAGAATTTTTTTCAT-TTTTTTT
blockSeqs : A A TT G CG A T A TT TT G G T TTGC CT TC T AT C . CAA C AA AT AGCGATA TA TTTG TTTC AG AA AACA AAAATTGGAAT TAGCAG A T GTTG CC A T GGAA TAA TTTTAACGCTAACCAA C TG G G AA A T CC A A CAT
blockSeqs : A A . . . . . . A TT . . T AC AG . A AT . . CA C C T AGCGATA TA . . . . . GC . T . T . A A . . . C TG T . . T . . . A TA
blockSeqs : A A . . . . . . A A . . G TG TC . C AG . . CA G C T AGCAAAA . . . . . . . . A . . . A T . . . C TC T . . G . . . A T
blockSeqs : . . . . . . . . A . . . G TT TC . C AT . . CA G A T . . . . . . . . . A . . . C T . . . C TG G . . A . . . A A
blockSeqs : . . . . . . . . A . . . T TT CA . T AT . . CA C A T . . . . . . . . . A . . . A A . . . T TG T . . T . . . A T
blockSeqs : . . . . . . . . A . . . A AG TC . C CA . . CA G C T . . . . . . . . . T . . . A T . . . C TA G . . A . . . .
blockSeqs : . . . . . . . . T . . . T TT AG . A CA . . CA C A T . . . . . . . . . A . . . A T . . . C TA G . . A . . . .
blockSeqs : . . . . . . . . . . . . G CG TC . C A . . CA G C T . . . . . . . . . A . . . G T . . . . TG T . . T .
blockSeqs : . . . . . . . . . . . . T TT CA . C C . . CA G A T . . . . . . . . . A . . . G G . . . . TG G . . T .
blockSeqs : . . . . . . . . . . . . G TC CA . T C . . CA C A A . . . . . . . . . A . . . G G . . . . . T . . A .
blockSeqs : . . . . . . . . . . . . T CC CA . T C . . GA C C T . . . . . . . . . T . . . G . . . . . . C . . . .
blockSeqs : . . . . . . . . . . . . T TT TC . C A . . CA C C T . . . . . . . . . T . . . . . . G
blockSeqs : . . . . . . . . . . . . T TT CA . T C . . CA G C T . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . . . C AC CG . T C . . CA C T T . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . A CC CA . C A . . C A C T . . . . . .
blockSeqs : . . . . . . . . . . . . A CC TC . C C . . C G C . . .
blockSeqs : . . . . . . . . . . . . A TC TC . C T . . C G C . . .
blockSeqs : . . . . . . . . . . . . T TT CA . C C . . . G A . . .
blockSeqs : . . . . . . . . . . . . G TT G . T C . . . A A . .
blockSeqs : . . . . . . . . . . . . T CC . . . C . . . A C .
blockSeqs : . . . . . . . . . . . . G . . . . C . . . . T .
blockSeqs : . . . . . . . . . . . . G . . . .
blockSeqs : . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : .
blockSeqCons : **
originalCons : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATNAGCCGGGTTCAT--CTCCGT--GCACCATTTTACAC-C-TTT-T-TGTTCA-TANTGTCTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CACGTGCACAAC--CCG--TTCCAGCAAAAT----G-----------AA------AATGAG-A----TTTT--TTCATCGTTTCACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACGTATTTCGCTAACCAA----------------TTACTTTATCTAACTTTTTTGTTCATTACTTNATCAGCGGAAATGATCCGCTTACAAGTTATTCA-C--GAAAAACGNTTCA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-AAAAAAATGAAAGAATTTTTTT--T-TTTTTTT
finalCons : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATNAGCCGGGTTCAT--CTCCGT--GCACCATTTTACAC-C-TTT-T-TGTTCA-TANTGTCTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CACGTGCACAAC--CCG--TTCCAGCAAAAT----G-----------AA------AATGAG-A----TTTT--TTCATCGTTTCACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACGTATTTCGCTAACCAA----------------TTACTTTATCTAACTTTTTTGTTCATTACTTNATCAGCGGAAATGATCCGCTTACAAGTTATTCA-C--GAAAAACGNTTCA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-AAAAAAATGAAAGAATTTTTTT--T-TTTTTTT
Alignments
lowQualScore : 11 11 111 1111111 11111111111 2222222222222222
lowQualScore : 4 4 22 1 11 1 1 1 22 55 1 1 1 5555 00 22 1 222 1 1 666 2 0 22 66 9999999 55 5555 5555 33 33 5555 66666666666 777777 1 2 8888 33 4 1 7777 555 0 0000000000000000 5 22 1 0 3 44 2 3 66 5 3 9999
lowQualScore : . . .. . .. . . . .. .. . . . .... .. .. . ... . . ... . . .. .. ....... .. .... .... .. .. .... ........... ...... . . .... .. . . .... ... . ................ . .. . . . .. . . .. . . ....
lowQualScore : 3 3 00 4 99 5 5 5 44 66 5 6 0 4444 22 55 5 222 7 7 333 8 5 44 22 5555555 88 3333 3333 44 44 7777 33333333333 777777 1 7 3333 77 4 3 1111 888 7 4444444444444444 9 55 0 8 3 66 2 3 99 0 2 9999
consensus : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATNAGCCGGGTTCAT--CTCCGT--GCACCATTTTACAC-C-TTT-T-TGTTCA-TANTGTCTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CACGTGCACAAC--CCG--TTCCAGCAAAAT----G-----------AA------AATGAG-A----TTTT--TTCATCGTTTCACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACGTATTTCGCTAACCAA----------------TTACTTTATCTAACTTTTTTGTTCATTACTTNATCAGCGGAAATGATCCGCTTACAAGTTATTCA-C--GAAAAACGNTTCA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-AAAAAAATGAAAGAATTTTTTT--T-TTTTTTT
Reference ( family-625 ) : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATNAGCCGGGTTCAT--CTCCGT--GCACCATTTTACAC-C-TTT-T-TGTTCA-TANTGTCTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CACGTGCACAAC--CCG--TTCCAGCAAAAT----G-----------AA------AATGAG-A----TTTT--TTCATCGTTTCACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACGTATTTCGCTAACCAA----------------TTACTTTATCTAACTTTTTTGTTCATTACTTNATCAGCGGAAATGATCCGCTTACAAGTTATTCA-C--GAAAAACGNTTCA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-AAAAAAATGAAAGAATTTTTTT--T-TTTTTTT
gi|5160 : TTTT-TTA-C--AAACAATCACTACCCGAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATACTC-A-TT-TTA-T--CA-CCGAATTTAACTTCAAACTAACA-ATTATTAGCCGAGTTCAA--GTCCAT--GTACCATTTTACAC-A-TTT-TCTGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGATACTTGT----A----CACGTGCTCAAC--CCG--TCCCAGCAAAAT----G-----------AA------AATGAG-A----GTTT--TTCATCATTTCACCTTGGATTCGCATTGTAAAACAGTTT----GACT---GACGTATTTCGCTCGCCAA----------------CTACTTTATCGAACTTTTTTCTTCATAACTTTATCAGCGGAAATGATCCGCTGACGAGTTATTCA-C--GAAAAACGGTTCA-TTTTGCCAAACTGCTCATTCCGCGAGAGT--GAAAAAAGTGGG-AAAAAAACGAAAGAATTTTTTT--T-TTTTTTT
gi|5161 : TTTT-TTA-C--CAACAATCAACAACCGAAGGTTAAAGTTG-AAT--TTTTTTT
gi|5162 : TTTT-TTA-C--AAACAATCATTACCCGAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCGAAAGGAAAATACTC-A-TT-TTA-T--CA-CCGAATTCAACTTCAAACTAACA-ATTATTAGCCGAGTTCAA--CTCCTT--GTACCATTTTACACAT-TTT-T-TGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CACGTGCACAAC--CCG--TTCCAGCAAATT----G-----------AA------AATGAG-A----TATT--TACATCATATAACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACATATTTCGCTTACCAA----------------TTACTTTGTCTAACTTTTTTGTTCATTACTTGATCAGCGGAAATGATCCGCTTACATGTTATTCA-C--GAAAAACGATTTA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGC-GG-AAAAAAATGAAAGAATTTTTTT--TATTTTTTT
gi|5163 : TTTT-ATAAC--AAACAATCACTACCCGGAAGTTAAAGTCG-AAC--TTTTGCTCAATTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTGAAACTAACA-CTTATTAGCCGGGTCCAT--GTCAGT--GAA-------ACAC-A-TTT-T-CG-TCA-CACTGTCTC-CAGC-TCAATT-------TAT--AAACGAAAGTTGT----A----TATGTGCACAAT--CCG--TTACAGCAACAT----A-----------AA------AATGTG-A----TTTA--TTCATC-CTTCACAACGGATTTGCATTTTAAAACATTTG----GTCC---GACGTATTT-ATTAACCTT----------------TTA-TTGATCTAACATTTTTGTTCATTATTTTATTAGTGAAAATAAACCGCTTAAAAGTAATTCA-C--GAAAAACATTTCA-TTt
gi|5164 : TTTT-TTA-C--AAACAATCACCACCTGAAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAATTGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATGAGTCTGGTTTAT--TTCTCT--GCACCAATTTATAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAATAGCGATATACTAAAAAAAAATTTGTTTTGA----TATTTCCAGAA-----G---AACAGCAGAAT----AGC---------AA------AATGAA-A----TATT--TTCAT
gi|5165 : TTTT-TTA-C--AAGCAATCAGCACCCGGAAATTAAAGGGG-AAC--TTTATATCAATTCAACAAAAAGAAAATTCTC-A-TT-TT--T--CA-CCGACTTAACGTTCAAACTAACA-ATTAAGAGTCTGATTTAT--TTCTCT--GCATCATTTTCTAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAAT-------AGC--AA
gi|5166 : TTTT-TTA-C--AAACAATCACTACCCGAAGGTTAAAGGGG-AAC--GTTTTCTCATTTCACCAAAAGGAAAATACTC-G-TT-TTA-T--CA-CCGAATTTAACTTCAAACTAACA-ATTATTAGCCGAGTTCAA--GTCCAT--GTACCATTTTACACAT-TTT-T-TGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGATACTTGT----A----CACGTGCTCAAC--CCG--TCCCAGCAAAAT----G-----------AA------AATGAG-A----GTTT--TTCATCATTTCACCTTGGATTCGCATTGTAAAACAGTTT----GACT---GACGTATTTCGCTCGCCAA----------------CTACTTTATCGAACTTTTTTCTTCATAACTTTATCAGCGGAAATGATCCGCTGACGAGTTATTCA-C--GAAAAACGGTTCA-TTTTGCCAAACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGGAAAAAAAACGAAAGAATTTTATT--T-TTTTTTtatact
gi|5167 : TTTT-TTA-C--AAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAATGGAAATTTCTA-A-TT-TT--T--C----------ACGTTCAAACTAACA-ATTATATGCTGGATTCAT--TTATCT--GCACCA-TTTACAC-C-TTC-T-TGTTC--T-GTGTCTT-AAG--TGAAATAGCGATATACTAAAAAAAAAATCAT----ATTTCCA---GCAGAACAGCAGAAT---AGCAGAAT----GAAAATTGGAATAA------AATGAA-AGTTGTTTT--TTTATAACTT-ATTTTAG-TACACA-TGT-GAACATACCGGAAGTCTTAAGAAATATTTT-TTAACCAATTTTAACGCTAACCAATTACTTTATCTACCTTTTTTGTTCATTACTTGATCAGCGGAAATGATCCGCTTACAAGTTATTCA-C--GAAAAACGATTTA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGGG-GAAAAAATGAAAG-ATTTTTTT--
gi|5168 : TTTT-ATAAC--AAACAATCACTACCCGGAAGTTAAAGTGG-AAC--TTTTGCTCATTTCACCAAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTGAAACTAACA-CTTATTAGCCGGGTCCAC--GTCAGT--GAA-------ACAA-A-TTT-T-CG-TCA-TACTGTCTC-CAGC-TTAATT-------TAT--AAACGAAAGTTGT----A----TATGTGCACAAT--CCG--TTGCAGCAAAAT----A-----------AA------AATGTG-A----TTTA--TTCATCCTTTCACAACGGATTTGCATTTTAAAACATTTG----GTCC---GACGTATTT-ATTAACTTT----------------TTA-TTGATCTAACATTTTTGTTCATTACTTTATCAGTGAAAATAAACCGCTTAAAAGTTATTCA-C--GAAAAACATTTCA-TT
gi|5169 : TTTT-TTA-C--AAACAATCACCACCTGAAAGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAATTGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-ATTATGAGTCTGATTTATTGCTC--T--GCACAATTTTCTAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAAT-------T
gi|5170 : TTTT-TTA-C--AAACAATCACTACCCGAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAAGGAAAATACTC-A-TT-TTA-T--CA-CCGAATCTA
gi|5171 : TTTTATTA-C--AAATAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTGCTCATTTCACCAAAAGGGAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTGAAACTAACA-CTTATTAGCCGGGTactt
gi|5172 : TTTT-TTA-C--AAGCAATCAGCACCCGGCAATTAAAGGGG-AAC--TTTTTATCAATTCACCTAAAGGAAAATTCTC-A-TT-TT--T--CA-CCGACTTTACGTTCAAACTAACA-ATTATGAGTCTGATTTAT--TTCTCT--GCATCATTTTCTAC-C-TTC-T-TGTT---TAGTGTCTT-AAGC--AAAATAGCAAAATAC--TAACAAATTTTTT----T----TATATATATA------T--TTCCAGCAGAACAACAG-----------AATAGCAGAATGAA-A----TATT--TTCAT
gi|5173 : TTTT-TTA-C--CAACAATCAACAACCGAAGGTTAAAGTTG-AAT--TTTTTTT
gi|5174 : TTTT-TTA-C--AAACAATCAATTCCCAAAGGTTAAAGGGG-AAC--TTTTTCTCATTTCACCAAAATGAAAATACTC-A-TT-TTA-T--CA-CCGAATTTACGTTCAAACTAACA-ATTATTAGCCGCATTCAT--CTCCAT--GTAACATTTTACAC-AGTCT-T-TGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGATACTTGT----A----CACGTGCACAAC--TTG--TTCCAGCAAAAT----G-----------AA------AATGAG-A----TTTT--TTCATCATTTCACCTTGGATTCTCATTGTAAAAGGTTTT----GCCT---GACGTACTTCGCTAACCAA----------------TTACTTTATCTAACTTTTT--TTCATTACTTGATCAGCAGAAATGATCCGATTATAAGTTATTCA-C--GAAAAACGATTCATTTTTGCCAGACTG
gi|5175 : TTTT-TTA-C--AA----TCAACAACCGAAGGTTAAAGGGG-AAT--TTTTTGTTATTTCACCAAATGGAAAATTCTC-A-TT-TTTTT--CA-CCGAATTGACGTTCAAACTAACA-ATTATTAGCTGAGTTCAC--CTCCAT--G-GCCATTTTAAACAT-TTT-T-TGTTCA-TACTGTGTT-CAGG-TAAAAT-------TAC--AAACAAAACTTTT----A----CACGTTCACAAC--CCG--TTCCAGCAACAT----G-----------AA------AAT--C-A----TTTT--TTCATCATTTCACCTTGGATTCGTAATGGAAAACGTTTT----GCCT---GACGTATTTCGCTAACCAA----------------TTA-TTTATCTAACTTTTTTATTCATTAATTGATCAGCGGAAATGATCCGCTTATAAGTTATTCA-C--GAAAAACGATTCA-TTTTGCCAGAC----CATTCCGCGAGAGT--GAGAAAAGTGGG-GGAAAAATGAAAG-ATTGTTTT--A-TTATT
gi|5176 : TTTT-TTA----AAACAATCACTACCCGAAGGTTAAAGGGGGAAC--TTTTTCTCATTTCACTAAAAGGAAAATACTC-A-TT-TCA-T--CA-CCGAATTTAATAGCAAACTAACG-ATAATTAGCCAAGTTCAT--TTCCAT--GTACCATTTTACAC-A-TTT-T-TTTTCA-TACTGTGTT-CAGC-TAAAAT-------TAT--AAACGAAACTTGT----A----CACGTGCACAAC--CTG--TTCCAGCAAAAT----G-----------AA------AATGAG-A----TTTT--TTCATCATTTCACCTTGGATTCGCATTGTAAAACATTTT----GCCT---GACGTTTATCGCTAACCAA---------------------TTAT--------TTTATCCA--ACTTT--------------TTTGCTCATTACTTGATCAGC--GGA--------CA-TTTTGCCAGGCTGCTCATTCCTCGAGAGT--GAGTAAA-TTGG-AAAAAAATGAAAGAATTTTTTT--T-gatttt
gi|5177 : TTTT-TTAAC--AAACAATCACTACCCAAAGTTTAAAGGGG-AAC--TTTTTCTTATTTGACCAAAAGGAAAATATTC-A-TTATA--T--CA-CC-AATTTACGTTCAAACTAATA-ATTATCAGCCGGATTTAT--TTCTCT--GCACCATTTTCCAC-C-TTT-T-TGTTC---AGTGTCTT-TAGC-AAAAA
gi|5178 : TTTTATTA-C--GAACAATCACTACCCGGAAGTTAAAGGGG-AAC--TTTTTCTCATTTGACCAAAAGGAAAATTCTC-ATTT-TT--T--CA-CCGAATTTACGTTCACACTAACA-ATTATAAGCCGGATTagcaacatactt
gi|5179 : TTTTATTA-C--AAACAATCACTACCTTGAAGTTTAAGGGG-AAC--TTTTTCTCATTTCACCAAATGGAAAATTCTC-A-TT-TTT-T--CA-CCGAATTTACAATCAAACTAACA-ATTATATG-CGAGTTCAA--CTCCAT--GTACCATTTCACACAT-TTT-T-TGTTCA-TACTGTGTT-CAGC-TAAAAT-------TAC--AAACGAAACTTGT----A----CATGTGCACAAC--CCG--TTCCAGCAAAAT----G-----------AA------AATGAG-CT---TTTT--TTCATCGT-----------TTCGCATTGTTAAACATTTT----GCCT---GACGTATTTCGCAAACCAA----------------
gi|5180 : TTTT-TTA-C--AAACAATCACCACCCACAAGTTATAGGGG-AACCGTTTTTCTCATTTCACCAAAAGTAATATTATC-A-TT-TT--TTTCA-CCGATTTAACGTTCAAAGTAACA-ATTATAAGCAGGATTCA-----CCGT------CATGTAACA----------TGTTCAATA-TATTTT-CAGC-TAAAGT-------TTC--AAACGAAACTTGT----A----TATGTGCACAAT--CCG--TTCCAATGAAAT----G-----------AA------AGTGTG-A----TTTT--TTCATCGTTTCACCGTAGATTCGCATTGTAAAACATTAC----GCCT---GACGTATTCCTCTAACCAA----------------TAATTTTATATTACTTTT---CTTATTA-TTGAT
gi|5181 : TTTT-TTA-C--AAACAATCACTACTCAGAAATTAAAGGGG-AAC--TTTTTATCATTTCACCAAAACGAAAACTTTC-A-TT-TT--TA-TA-ACGAATCTACTTTCAAATTAACA-ATGCTTAGCCGGGTTCAC--CTCCAT--GTACCATTTTACAC-T-TTTCT-TGTTCA-TAATATATT-CAGA-TAAAGT-------TAC--AAACAAAAC--GT----A----CACTTGCACAAT--CCG--TTC
gi|5182 : TTGT-TTA-C--AAACAATCTTAACCCGAAAGTTAAAGGCG-AAC---TTTTCTAACTTTACCGAAATGGAAATTCTCAA-TT-TT--T--TA-CCTAATTCACGTTCAAATTAACAGATGACGGTCCGGATTCGC--CTCTCT--GCACCAGTTTATAC-C--TT-T-TGTTGA-CAGTGTCTT-AAGCATAA
gi|5183 : TTTT-TTA-C--AAGCAATCACTACCTGGAAGT--------------------------CACCAAAAGTAAACTT------TT-TC--T--CA-TCGCATTTACGTTCAAACTAACA-ATTATTAGCCATGTCCAT--CT--GTTCGCACCATTTAACAC-C-TTT-T-TGTTCA-
gi|5184 : TTTT-TTA-C--AAACAATCACCATCCGAAAGTTGAAGGGG-AAC--TTTTTCTCATTTCGCCAAATGGAAAATTCTC-A-TT-TT--T--CA-CCGAATTTACGTTCAAACTAACA-AATATGAGCC
gi|5185 : TTTT-TTA------ACAATCACCACCCGAAAGTTA--GATG-AAC--TTTTTCTCATTTCACAAAATGGAAAAGTCTC-T-TT-TT--T--CA-CCGAATTTACGTTCAAACAAACA-ATTATGAGCCCGATTTAT--TTCTCT--GCACCATTTTCTAT-C-TTC-T-TGTT---TAGTGTCTG-AAGC--AAAAT-------AGC--AA
gi|5186 : TT-TTA-TTTAAACAATCACTACCCGGAAGTTAAAGAGG-AGT--TTTTTCTCATTTCACCAAATGGAAAATTCTA-A-TT-TT--T--CA-CCGAATTTATGTTCAAACTAAAA-ATTATAAGCCGAATACAT--TTC--T--GCACCATTTTCCAT-C-TCT-T-TGTTC---AGTGTCTTAAAG---AAAAT-------AGC--AAAtatact
gi|5187 : TT-TAA-C--AAACAATCACTACCCGGGATTTAAAGGTG-AAC--TTTTTCTCATTTCACAAAAAAGAAATTTCTC-A-TT-TT--T--AAGCCGAATatact
gi|5188 : --TTCTTCTCATTTCACCAAAAGGGAAATTCT--A-TT-TT--TTTCA-CCGTATTTACGTTCAAACTTACA-ATTATTAGCCTGGTTC-C--CTCCAT--GTACCATTTTACAC-CACTT-T-TGTTCA-TAATGTTTT-CAGC-TTAAAT-------TAC--AAACGAAACTT-T----A----AACGTATACAAT--CCG--TTCAACCAAAAT----G-----------AA------AATGTG-A----TTTTCCTTCATCGTTTCACCGTAGATTTGCATTGTAAAACAATTT----GCCT---GACGTATTTCGCTTACCAA----------------TTACTTTATGAAACTTTTT--TTCATTACTTTATCAGCGGAAATGATCCACTTATAAGTTATTTA-CAAAAAAAATGTTTCA-TTTTGCAAGACTGCTTATTCCGCAAAAGTCCGAGAAAAGTGAG-AAAAAAATGAAAGAA
gi|5189 : TACAC-CATTT-T-TGTTCA-TAATGTCTT-TAGC-TAAA-----------------TGA-----GC----A----CACGTACATAAC--GTG--TTTCAGCTTAAT----G-----------AT------CGTGCGTC----TTTT--TTCAT-GTTTC
gi|5190 : CGTATTTCGCTTACCAA----------------TTACTTTATCTAACATTTGTGTTCATTACTTCATCAGCGAAAATAATCCGCTTATAAGTTATTCA-C--GAAAAATCTTTCA-TTTTGACAGACAGCTCATTCGGCAA
gi|5191 : ATCTAACTTTTTTGTTCATTACTTGATCAGCGGAAATGATCCGCTTACATGTTATTCA-C--GAAAAACGATTTA-TTTTGCCAGACTGCTCATTCCGCGAGAGT--GAGAAAAGTGG---AAAAAATGAAAGAATTTTTTTCAT-TTTTTTT