lowQualScore : 11
lowQualScore : 9 0 5 1 4444 55 66 4
lowQualScore : . . . . .... .. .. .
lowQualScore : 2 8 4 8 3333 88 99 0
consensus : AATGTTGA-ACAAGTAAGAACTTCAATATTGAAGGTCTTCCC----TG--T--ANCATTTGAC
Reference ( gi|38549 ) : AATGTTGA-ACAAGTAAGAACTTCAATATTGGAGGTCTTCCC----TG--T--AACATTTGAC
gi|38554 : AATGTTAA-ACAAGTAAGAACTTCAATATTGAAGGTCTTCCC----TG--T--AACATATGAC
gi|38539 : AATGTTAA-ACAAGTAAGAACTTCAATATTGAAGGTCTTCCC----TG--T--AACATATGAC
gi|38547 : AATGTTGA-ACAAGTAAGAACTTCAATATTAAAGGTCTTCCC----TG--T--ATCATTTGAC
gi|38555 : AATGTTGA-ACAAGTAAGAACTTCAATATTGGAGGTCTTCCCTGTGTG--T--ATCATTTAAC
gi|38540 : AATGTTGA-ACAAGTAAGAACTTCAATATTGGAGGTCTTCCCTGTGTG--T--ATCATTTAAC
gi|38550 : AATGTTGA-ACAAGTAAGTACTTCAATATTGAAGGTCTCCCC----TG--T--ATCATTTGAC
gi|38548 : AATGTTGA-ACAAGTAAGTACTTCAATATTGAAGGTCTCCCC----TG--T--ATCATTTGAC
gi|38536 : AATGTTGA-ACAAGTAAGTACTTCAATATTGAAGGTCTCCCC----TG--T--ATCATTTGAC
gi|38546 : AATGTTGA-ACAAGTAAAAAATTCAATATTGAAGGTCTTCCC----TG--T--ATCATTTGAC
gi|38535 : AATGTTGA-ACAAGTAAAAAATTCAATATTGAAGGTCTTCCC----TG--T--ATCATTTGAC
gi|38551 : AATGTTGA-ACAAGTAAGTACTTCAATATTAAAGGTCTTCCC----TG--T--ATCATTTGAC
gi|38537 : AATGTTGA-ACAAGTAAGTACTTCAATATTAAAGGTCTTCCC----TG--T--ATCATTTGAC
gi|38562 : AATGTTAA-ACAACTAAGAACTTCAATATTAAAGGTCTTCTC----TG--T--AACATTTGAC
gi|38562 : AATGTT---ACAGAGAAGACCTTTAATATTGAAGTTCTTAGT----TGTTT--AACATT
gi|38542 : AATGTTAA-ACAACTAAGAACTTCAATATTAAAGGTCTTCTC----TG--T--AACATTTGACtgac
gi|38542 : AATGTT---ACAGAGAAGACCTTTAATATTGAAGTTCTTAGT----TGTTT--AACATT
gi|38552 : AATATTGA-ACAAGCAAGTACTTCAATATTGAAGGTCTTCCC----TG--T--ATCATTTGACtgac
gi|38538 : AATATTGA-ACAAGCAAGTACTTCAATATTGAAGGTCTTCCC----TG--T--ATCATTTGAC
gi|38553 : AATGTTGA-ACAAGTAAGTACTTCAATATTAAAGATCTTCCC----TG--T--ATCATTTGAC
gi|38556 : AATGTTGA-ACAAATAAGAACTTTAATATTGAAGGTCTTCCC----TG--T--ATCAACTGAC
gi|38557 : AATGTTGA-ACAAGTAAGTACTTGACTATTGAAGGTCTTCCC----TG--T--ATCATTTGAC
gi|38558 : AATGTTGA-ACAATTAAGTACTTCAATATTGAAGGTGTTCCC----TG--T--ATCATTTGAC
gi|38559 : AATGTTGA-ACAAGTAAGTACTTCAATATTAAAGGTTTTCCA----TG--T--ATCATTTGAC
gi|38560 : AATGTTGA-ACAAGTAAGTACTTCAGTATTAAAGGTCTTCTT----TG--T--ATCATTTGAC
gi|38561 : AATGTTGA-ACAATTAAGTACTTCAATATTAAAGGTCTTCCC----TGT-T--ATCATTTGAC
gi|38541 : AATGTTGA-ACAATTAAGTACTTCAATATTAAAGGTCTTCCC----TGT-T--ATCATTTGAC
gi|38564 : AATATTTA-ACAATTAAGAATTTCAGTATTGAAGTTTTTCCC----TG--T--AACATTTGAC
gi|38564 : AATGTT---ACAGGGAAAAACTTCAATACTGAAATTCTTAAT----TG--TTAAATATT
gi|38543 : AATATTTA-ACAATTAAGAATTTCAGTATTGAAGTTTTTCCC----TG--T--AACATTTGACtgac
gi|38543 : AATGTT---ACAGGGAAAAACTTCAATACTGAAATTCTTAAT----TG--TTAAATATT
gi|38563 : AATATTGA-ACAAGTAAGTACTTCAATTTTTAAGGTCTTCCA----TG--T--ATCATTTGtgac
gi|38565 : AATGTTGA-ACAAGTGAGAAATT-AA---TGAAGTTCTTCTC----TG--T--ATTATTTGAC
gi|38544 : AATGTTGA-ACAAGTGAGAAATT-AA---TGAAGTTCTTCTC----TG--T--ATTATTTGAC
gi|38566 : AATGTTGA-ACAAATGAGAA-TTTAA---TGAAGGTCTTCTC----TG--T--ATTATTGGAC
gi|38545 : AATGTTGA-ACAAATGAGAA-TTTAA---TGAAGGTCTTCTC----TG--T--ATTATTGGAC
gi|38567 : AATGTTGA-ACAAGTGTGAA-TTTAA---TGAAGGTCTTCTCTT--TG--T--ATTATTTGAC
gi|38554 : ATGTT---ACAGGGAAGACCTTCAATATTGAAGTTCTTACT----TGTTT--AACATT
gi|38539 : ATGTT---ACAGGGAAGACCTTCAATATTGAAGTTCTTACT----TGTTT--AACATTatgac
gi|38556 : GTTGATACAGGGAAGACCTTCAATATTAAAGTTCTTATT----TG--TTCAACATTatgac
gi|38547 : TGATACAGGGAAGACCTTTAATATTGAAGTTCTTACT----TG--TTCAACATTtgac
gi|38550 : TGATACAGGGGAGACCTTCAATATTGAAGTACTTACT----TG--TTCAACATTtttgac
gi|38548 : TGATACAGGGGAGACCTTCAATATTGAAGTACTTACT----TG--TTCAACATTtttgac
gi|38536 : TGATACAGGGGAGACCTTCAATATTGAAGTACTTACT----TG--TTCAACATTtttgac
gi|38546 : TGATACAGGGAAGACCTTCAATATTGAATTTTTTACT----TG--TTCAACATTtttgac
gi|38535 : TGATACAGGGAAGACCTTCAATATTGAATTTTTTACT----TG--TTCAACATTtttgac
gi|38551 : TGATACAGGGAAGACCTTTAATATTGAAGTACTTACT----TG--TTCAACATTtttgac
gi|38537 : TGATACAGGGAAGACCTTTAATATTGAAGTACTTACT----TG--TTCAACATTtttgac
gi|38552 : TGATACAGGGAAGACCTTCAATATTGAAGTACTTGCT----TG--TTCAATATTtttgac
gi|38538 : TGATACAGGGAAGACCTTCAATATTGAAGTACTTGCT----TG--TTCAATATTtttgac
gi|38553 : TGATACAGGGAAGATCTTTAATATTGAAGTACTTACT----TG--TTCAACATTtttgac
gi|38555 : -ACAGGGAAGACCTCCAATATTGAAGTTCTTACT----TG--TTCAACATTtttgac
gi|38540 : -ACAGGGAAGACCTCCAATATTGAAGTTCTTACT----TG--TTCAACATTgtgtatcatttaac
Alignments
lowQualScore : 2 6666 2 1
lowQualScore : . .... . .
lowQualScore : 8 8888 4 0
consensus : AATGTTGAACAAGTAAGNACTTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
Reference ( family-607 ) : AATGTTGAACAAGTAAGAACTTCAATATTGAAGGTCTTCCC----TG-TANCATTTGAC
gi|38535 : AATGTTGAACAAGTAAAAAATTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
gi|38536 : AATGTTGAACAAGTAAGTACTTCAATATTGAAGGTCTCCCC----TG-TATCATTTGAC
gi|38537 : AATGTTGAACAAGTAAGTACTTCAATATTAAAGGTCTTCCC----TG-TATCATTTGAC
gi|38538 : AATATTGAACAAGCAAGTACTTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
gi|38539 : AATGTTAAACAAGTAAGAACTTCAATATTGAAGGTCTTCCC----TG-TAACATATGAC
gi|38540 : AATGTTGAACAAGTAAGAACTTCAATATTGGAGGTCTTCCCTGTGTG-TATCATTTAAC
gi|38541 : AATGTTGAACAATTAAGTACTTCAATATTAAAGGTCTTCCC----TGTTATCATTTGAC
gi|38542 : AATGTTAAACAACTAAGAACTTCAATATTAAAGGTCTTCTC----TG-TAACATTTGAC
gi|38543 : AATATTTAACAATTAAGAATTTCAGTATTGAAGTTTTTCCC----TG-TAACATTTGAC
gi|38544 : AATGTTGAACAAGTGAGAAATT-AA---TGAAGTTCTTCTC----TG-TATTATTTGAC
gi|38545 : AATGTTGAACAAATGAGAATTT-AAT---GAAGGTCTTCTC----TG-TATTATTGGAC
gi|38546 : AATGTTGAACAAGTAAAAAATTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
gi|38547 : AATGTTGAACAAGTAAGAACTTCAATATTAAAGGTCTTCCC----TG-TATCATTTGAC
gi|38548 : AATGTTGAACAAGTAAGTACTTCAATATTGAAGGTCTCCCC----TG-TATCATTTGAC
gi|38549 : AATGTTGAACAAGTAAGAACTTCAATATTGGAGGTCTTCCC----TG-TAACATTTGAC
gi|38550 : AATGTTGAACAAGTAAGTACTTCAATATTGAAGGTCTCCCC----TG-TATCATTTGAC
gi|38551 : AATGTTGAACAAGTAAGTACTTCAATATTAAAGGTCTTCCC----TG-TATCATTTGAC
gi|38552 : AATATTGAACAAGCAAGTACTTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
gi|38553 : AATGTTGAACAAGTAAGTACTTCAATATTAAAGATCTTCCC----TG-TATCATTTGAC
gi|38554 : AATGTTAAACAAGTAAGAACTTCAATATTGAAGGTCTTCCC----TG-TAACATATGAC
gi|38555 : AATGTTGAACAAGTAAGAACTTCAATATTGGAGGTCTTCCCTGTGTG-TATCATTTAAC
gi|38556 : AATGTTGAACAAATAAGAACTTTAATATTGAAGGTCTTCCC----TG-TATCAACTGAC
gi|38557 : AATGTTGAACAAGTAAGTACTTGACTATTGAAGGTCTTCCC----TG-TATCATTTGAC
gi|38558 : AATGTTGAACAATTAAGTACTTCAATATTGAAGGTGTTCCC----TG-TATCATTTGAC
gi|38559 : AATGTTGAACAAGTAAGTACTTCAATATTAAAGGTTTTCCA----TG-TATCATTTGAC
gi|38560 : AATGTTGAACAAGTAAGTACTTCAGTATTAAAGGTCTTCTT----TG-TATCATTTGAC
gi|38561 : AATGTTGAACAATTAAGTACTTCAATATTAAAGGTCTTCCC----TGTTATCATTTGAC
gi|38562 : AATGTTAAACAACTAAGAACTTCAATATTAAAGGTCTTCTC----TG-TAACATTTGAC
gi|38563 : AATATTGAACAAGTAAGTACTTCAATTTTTAAGGTCTTCCA----TG-TATCATTTG
gi|38564 : AATATTTAACAATTAAGAATTTCAGTATTGAAGTTTTTCCC----TG-TAACATTTGAC
gi|38565 : AATGTTGAACAAGTGAGAAATT-AA---TGAAGTTCTTCTC----TG-TATTATTTGAC
gi|38566 : AATGTTGAACAAATGAGAATTT-AAT---GAAGGTCTTCTC----TG-TATTATTGGAC
gi|38567 : AATGTTGAACAAGTGTGAA-TTTAA---TGAAGGTCTTCTCTT--TG-TATTATTTGAC
Alignments
lowQualScore : 1 6666 2
lowQualScore : . .... .
lowQualScore : 0 8888 4
consensus : AATGTTGAACAAGTAAGNACTTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
Reference ( family-607 ) : AATGTTGAACAAGTAAGNACTTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
gi|38535 : AATGTTGAACAAGTAAAAAATTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
gi|38536 : AATGTTGAACAAGTAAGTACTTCAATATTGAAGGTCTCCCC----TG-TATCATTTGAC
gi|38537 : AATGTTGAACAAGTAAGTACTTCAATATTAAAGGTCTTCCC----TG-TATCATTTGAC
gi|38538 : AATATTGAACAAGCAAGTACTTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
gi|38539 : AATGTTAAACAAGTAAGAACTTCAATATTGAAGGTCTTCCC----TG-TAACATATGAC
gi|38540 : AATGTTGAACAAGTAAGAACTTCAATATTGGAGGTCTTCCCTGTGTG-TATCATTTAAC
gi|38541 : AATGTTGAACAATTAAGTACTTCAATATTAAAGGTCTTCCC----TGTTATCATTTGAC
gi|38542 : AATGTTAAACAACTAAGAACTTCAATATTAAAGGTCTTCTC----TG-TAACATTTGAC
gi|38543 : AATATTTAACAATTAAGAATTTCAGTATTGAAGTTTTTCCC----TG-TAACATTTGAC
gi|38544 : AATGTTGAACAAGTGAGAAATT-AAT---GAAGTTCTTCTC----TG-TATTATTTGAC
gi|38545 : AATGTTGAACAAATGAGAATTT-AAT---GAAGGTCTTCTC----TG-TATTATTGGAC
gi|38546 : AATGTTGAACAAGTAAAAAATTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
gi|38547 : AATGTTGAACAAGTAAGAACTTCAATATTAAAGGTCTTCCC----TG-TATCATTTGAC
gi|38548 : AATGTTGAACAAGTAAGTACTTCAATATTGAAGGTCTCCCC----TG-TATCATTTGAC
gi|38549 : AATGTTGAACAAGTAAGAACTTCAATATTGGAGGTCTTCCC----TG-TAACATTTGAC
gi|38550 : AATGTTGAACAAGTAAGTACTTCAATATTGAAGGTCTCCCC----TG-TATCATTTGAC
gi|38551 : AATGTTGAACAAGTAAGTACTTCAATATTAAAGGTCTTCCC----TG-TATCATTTGAC
gi|38552 : AATATTGAACAAGCAAGTACTTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
gi|38553 : AATGTTGAACAAGTAAGTACTTCAATATTAAAGATCTTCCC----TG-TATCATTTGAC
gi|38554 : AATGTTAAACAAGTAAGAACTTCAATATTGAAGGTCTTCCC----TG-TAACATATGAC
gi|38555 : AATGTTGAACAAGTAAGAACTTCAATATTGGAGGTCTTCCCTGTGTG-TATCATTTAAC
gi|38556 : AATGTTGAACAAATAAGAACTTTAATATTGAAGGTCTTCCC----TG-TATCAACTGAC
gi|38557 : AATGTTGAACAAGTAAGTACTTGACTATTGAAGGTCTTCCC----TG-TATCATTTGAC
gi|38558 : AATGTTGAACAATTAAGTACTTCAATATTGAAGGTGTTCCC----TG-TATCATTTGAC
gi|38559 : AATGTTGAACAAGTAAGTACTTCAATATTAAAGGTTTTCCA----TG-TATCATTTGAC
gi|38560 : AATGTTGAACAAGTAAGTACTTCAGTATTAAAGGTCTTCTT----TG-TATCATTTGAC
gi|38561 : AATGTTGAACAATTAAGTACTTCAATATTAAAGGTCTTCCC----TGTTATCATTTGAC
gi|38562 : AATGTTAAACAACTAAGAACTTCAATATTAAAGGTCTTCTC----TG-TAACATTTGAC
gi|38563 : AATATTGAACAAGTAAGTACTTCAATTTTTAAGGTCTTCCA----TG-TATCATTTG
gi|38564 : AATATTTAACAATTAAGAATTTCAGTATTGAAGTTTTTCCC----TG-TAACATTTGAC
gi|38565 : AATGTTGAACAAGTGAGAAATT-AAT---GAAGTTCTTCTC----TG-TATTATTTGAC
gi|38566 : AATGTTGAACAAATGAGAATTT-AAT---GAAGGTCTTCTC----TG-TATTATTGGAC
gi|38567 : AATGTTGAACAAGTGTGAA-TTTAA---TGAAGGTCTTCTCTT--TG-TATTATTTGAC
blockSeqs : T TGTG T
blockSeqs : T TGTG T
blockSeqs : T TT .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : T . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : T . .
blockSeqs : A . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : T . .
blockSeqs : A . .
blockSeqs : T . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqs : A . .
blockSeqCons :
originalCons : AATGTTGAACAAGTAAGNACTTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
finalCons : AATGTTGAACAAGTAAGNACTTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
Alignments
lowQualScore : 1 6666 2
lowQualScore : . .... .
lowQualScore : 0 8888 4
consensus : AATGTTGAACAAGTAAGNACTTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
Reference ( family-607 ) : AATGTTGAACAAGTAAGNACTTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
gi|38535 : AATGTTGAACAAGTAAAAAATTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
gi|38536 : AATGTTGAACAAGTAAGTACTTCAATATTGAAGGTCTCCCC----TG-TATCATTTGAC
gi|38537 : AATGTTGAACAAGTAAGTACTTCAATATTAAAGGTCTTCCC----TG-TATCATTTGAC
gi|38538 : AATATTGAACAAGCAAGTACTTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
gi|38539 : AATGTTAAACAAGTAAGAACTTCAATATTGAAGGTCTTCCC----TG-TAACATATGAC
gi|38540 : AATGTTGAACAAGTAAGAACTTCAATATTGGAGGTCTTCCCTGTGTG-TATCATTTAAC
gi|38541 : AATGTTGAACAATTAAGTACTTCAATATTAAAGGTCTTCCC----TGTTATCATTTGAC
gi|38542 : AATGTTAAACAACTAAGAACTTCAATATTAAAGGTCTTCTC----TG-TAACATTTGAC
gi|38543 : AATATTTAACAATTAAGAATTTCAGTATTGAAGTTTTTCCC----TG-TAACATTTGAC
gi|38544 : AATGTTGAACAAGTGAGAAATT-AAT---GAAGTTCTTCTC----TG-TATTATTTGAC
gi|38545 : AATGTTGAACAAATGAGAATTT-AAT---GAAGGTCTTCTC----TG-TATTATTGGAC
gi|38546 : AATGTTGAACAAGTAAAAAATTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
gi|38547 : AATGTTGAACAAGTAAGAACTTCAATATTAAAGGTCTTCCC----TG-TATCATTTGAC
gi|38548 : AATGTTGAACAAGTAAGTACTTCAATATTGAAGGTCTCCCC----TG-TATCATTTGAC
gi|38549 : AATGTTGAACAAGTAAGAACTTCAATATTGGAGGTCTTCCC----TG-TAACATTTGAC
gi|38550 : AATGTTGAACAAGTAAGTACTTCAATATTGAAGGTCTCCCC----TG-TATCATTTGAC
gi|38551 : AATGTTGAACAAGTAAGTACTTCAATATTAAAGGTCTTCCC----TG-TATCATTTGAC
gi|38552 : AATATTGAACAAGCAAGTACTTCAATATTGAAGGTCTTCCC----TG-TATCATTTGAC
gi|38553 : AATGTTGAACAAGTAAGTACTTCAATATTAAAGATCTTCCC----TG-TATCATTTGAC
gi|38554 : AATGTTAAACAAGTAAGAACTTCAATATTGAAGGTCTTCCC----TG-TAACATATGAC
gi|38555 : AATGTTGAACAAGTAAGAACTTCAATATTGGAGGTCTTCCCTGTGTG-TATCATTTAAC
gi|38556 : AATGTTGAACAAATAAGAACTTTAATATTGAAGGTCTTCCC----TG-TATCAACTGAC
gi|38557 : AATGTTGAACAAGTAAGTACTTGACTATTGAAGGTCTTCCC----TG-TATCATTTGAC
gi|38558 : AATGTTGAACAATTAAGTACTTCAATATTGAAGGTGTTCCC----TG-TATCATTTGAC
gi|38559 : AATGTTGAACAAGTAAGTACTTCAATATTAAAGGTTTTCCA----TG-TATCATTTGAC
gi|38560 : AATGTTGAACAAGTAAGTACTTCAGTATTAAAGGTCTTCTT----TG-TATCATTTGAC
gi|38561 : AATGTTGAACAATTAAGTACTTCAATATTAAAGGTCTTCCC----TGTTATCATTTGAC
gi|38562 : AATGTTAAACAACTAAGAACTTCAATATTAAAGGTCTTCTC----TG-TAACATTTGAC
gi|38563 : AATATTGAACAAGTAAGTACTTCAATTTTTAAGGTCTTCCA----TG-TATCATTTG
gi|38564 : AATATTTAACAATTAAGAATTTCAGTATTGAAGTTTTTCCC----TG-TAACATTTGAC
gi|38565 : AATGTTGAACAAGTGAGAAATT-AAT---GAAGTTCTTCTC----TG-TATTATTTGAC
gi|38566 : AATGTTGAACAAATGAGAATTT-AAT---GAAGGTCTTCTC----TG-TATTATTGGAC
gi|38567 : AATGTTGAACAAGTGTGAA-TTTAA---TGAAGGTCTTCTCTT--TG-TATTATTTGAC