lowQualScore : 1 11 11 1
lowQualScore : 2 88 2 555555 2 4444 4 4 1 99999999999999 22 6 8 55 3 33333 1 99 5 1 6 88888 444444 222 1 11 6 1
lowQualScore : . .. . ...... . .... . . . .............. .. . . .. . ..... . .. . . . ..... ...... ... . .. . .
lowQualScore : 2 66 0 888888 0 0000 8 4 7 44444444444444 11 8 0 88 0 66666 4 11 1 4 1 11111 000000 444 4 99 7 5
consensus : GCTCCTGCATATC-TCAAAGATTTATTTACTC-TAA-CAGCTA------ATGT-TCATACACGC----ACATTACGGTCATCC-TCTAATCTACAGT--------------TGTATTCTCCT--AAGCCNAA-TT-CTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAACTCTATTCCGTCT-TATAT---A-AAAAA------T---G-C--AAATTCTATTAAT-CAGTTCAAAGCTTTATATTTACAAT
Reference ( gi|79806 ) : GCTCCTGCATATC-TCAAAGATTTATTTACTC-CAA-CAGCTA------ATGT-TCATACACGC----ACACTTCGGTCATCC-TCTAATCTACAGT--------------TGTATTCTCCT--AGGCCTAA-GT-CTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTCCTTGTGGAACTCTATTCTATCT-TACAT---A-AAAAA------T---G-C--AAATTCTATAAAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79807 : GCTCCTGCATATC-TCAAAGATTTATTTACTC-CAA-CAGCTA------ATAT-TAATACACGC----ACACTACGGCCATCC-TCTAATCTACAGT--------------TGTTTTCTCCT--AAGCCTAA-TT-CTGAAA-----TATTT-CGAAATTCGTTTGCTTATTCAGGCTCTT-TTTGTGGAACTCTATTCCGTCT-TATAT---A-AAAAA------T---G-C--AAATTCTATTAAT-CAGTTCAAAGCATTATATTTACGAT
gi|79808 : GCTCCTGCATATC-TCAAAGATTTATTTGCTC-TAA-CAGCCA------ATGT-TCATACACGC----ACATTACGGCCATCC-TCTAATTTACAGT--------------TGAATTCTCCT--AAGTCTAA-TT-CTGGAA-----TGTTT-CGATATTCGTTTACTTATTTAAGCTCTTGTTTGTGGAACTCTATTCCGTCT-TATAT---A-AAAAA------T---T-C--AAATTCTATTGAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79809 : GCTCATGCATATC-TGAAAGATTTATTTACTC-TAA-CAGCTT------ATGT-----ACACAC----ACACTACGGTCATTC-TCTAATCTACAAT--------------TGTATTCTCCT--AAGCCTAA-TT-CTGCAA-----TGAGT-CGAAATTCGTTTGCTTATTTAGGCTCTTCTTTGTGGAACTCTATTCCATCT-TATAT-----AAAAA------T---G-C--AAATTCTATTTAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79810 : GCTGCTGCATATA-TAAAAGATTTATGTACTC-TAA-CTGCTA------ATGT-CCATACACGC----ACACTACGGTCATTC-TCTAATCTACAGT--------------TTAATTTTCCT--AAGCCAGA-TT-CTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGTCTCTTGTTTGTGGAACTGTATTCCGTCT-TTTAT---A-AAAAAAAAACCC---G-CAAAAATTCTATTAAT-CAGTTCAAAGCTTTATATTTAAAAT
gi|79811 : GCACCTGCATATC-TCAAAGATTTGTTTACCC-TTA-CAGCTA------AAGT-GCATACACGT----ACATTACGGTCATCC-TCTAATCTACAGT--------------TGTACTCCCCT--ACGCTAAA-TT-CTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAATTCTATTCGATCT-T-------------------------------ATTATATTAGT-CAGATCAAAGCTTTATATTTACCAT
gi|79813 : GCTCATGCATATC-TCAGAGATGTTTTTACTC-TAA-CAGCTG------ATAC-TCATACACGC----ACATTACGGTCATCC-TCTAATCTACAGTTGTACATTGTATTCTGTATTCTCTT--AAGCCGAA-TT-CTGAAA-----TATTT-CGAAATTCGTTTGCTTTTTCACGCTCTTGTTTGTGGAACATTTTTCCCTCT-TTTAT-----AAAAA------T---G-C--TTATTCCATTAAG-CAGTTCAAAGCTTTATATTTGCAAT
gi|79812 : GCCCCTGCATATT-TCAAATATTTATTTACTC-TAA-CAGCTA------ATGT-TCATGAACGT----ACATTAC---CATC----------ATAGC--------------TGTATTCTCCT--AAGCCAAA-TT-CTGAAA-----TATTT-CGAAATACGTTTGCTAATTCAGGCTCTTGTTTGTGGAATTTTATTCCATGT-TATAT---ATAAGAA------T---G-C--AAATTATATTAAT-CAGTTCAAAGTTTTGTATTTACAAT
gi|79816 : GCTCTTGCATATC-TCAAAGATTTATTTACTC-CAA-CCGCTA------ATGT-TCATACACGC----AAACTACGGTCATCC-TCTAATTTAAAGT--------------TGTATACTCCT--AAGCCTAG-TT-ATGAAA-----CGTAT-CGAAATTCGTTTGCTTATTCAGGCTCTT
gi|79815 : GTTCCTGCATATC-TCAAAGATTTACTTACTC-TAA-CAACTG------ATGT-TCATTCACGC----ACATTACGGTCAACC-TCTAATATACAGG--------------TGTTTTCTCCT--AAGCCTAA-TA-CTGAAA-----TGTTT-CGAAATTCATTTGCTTATTCAGGCTCTTGTTTGTat
gi|79814 : GCTCCTTCATATC-TCGAAGATTCATTTACTC-TAA-CAGCTA------ATGT-TCATACACAA----ATATTATGATCATCC-TCTAATCTA--GT--------------TGTATTCTCCC--GAGTCCAA-TT-TTGAAA-----TGTTT-CAAAATTC--TTGTTT----------------GTGGAACTCTATTCCGTCT-TATAT---A-AAAAA------T---G-C-----TT-----AATCCAATTCAAAGCTTTATATTAAAAAT
gi|79817 : GCTCTTGCATATC-TCAAAGAATTATTTACTC-TTGTCAGCCA------ATGT-TCATACACGC----ACATCACGGCCATCCGTTTAATCGACAGT--------------TGTAATCTCC---ATATCAAA-TT-CTGAAA-----TGTCA-CGAAATTCGTTTGCTTATTCAGACTCTT--GTATAG---TCCGTCATATATATATAA---A-AAAAA------T---G-C--AAATT
gi|79818 : GCTCCTGCATACC-TCAAATGTGTATATACTG-TTA-CAGCTACATGTAACGT-CCATACACGT----ACATTACGGCCATCC-TCTAATCTACAAT--------------TGTTTT
gi|79819 : CTCCTGCATATC-TCAAAGATTTATTTACTC-TAC-CAGCTA------ATGT-TCATACACAC----ACATTACGGTCATCC-TCTAATCTACAGT--------------TGTATTCCCCCCAAAGTCAAATTT-CTGAAA-----TGTTTAAGAAATCCGTTTGTTAATGTAAGCTCAAGTATGTGAAACTCTATTCCGTCA-TATAT---A-GAAAA------T---G-C--AAATTATATTAAT-CACTTCAAAGCTTTATATTTACAATtgcaagctcttgcttgttgaactattttcaatcatttataaaaatgcaaatacttttgattagttaaaaactttattttta
gi|79820 : CTCCTGCATATC-TCAAATATTTATTTACTC-TAA-CAGCTA------ATGT-TCATACATGC----ACACTACAGTCATCC-TCTAATCTACAG
gi|79821 : CTTCTGCATATCATCAAAGATATATTTACTT------AG-----------GC-TCATACGGG---------TT--GTTTTAT-TTT--TCCACAGT--------------TGTATTTTCCT--AAGCC-AA-ATACTGAAA-----TGTTT-CGCCAATGGTTTACTTACATAGGCTCTT
gi|79824 : CTGCGTATC-TTACAG-CTTATTTGC-------------------ATATCTCAAACA-GC----ACAGTACGGTCATCC-TCTAATCTACAAT--------------TGTATTCC-------------------GAAA-----TGTTT-TGAAATTCGTTTGCTTATTCGGGCTCTTGTTTGTGAAACTCTATTCCGTCT-AATAT-----TAAAA------C---G-A--AAATTCTGTTAAT-CAGTTCAAAGCCTTATATTTACAATgttgtttacttcaggtgcttatat
gi|79822 : aaagcttatTGCATATC-TCTAAGAATGATATACTT-TAA-CAG------------T-TCATACACGT----ACATTACAGTCATCC-TCTTATCTACAGT--------------TGTA----------------A-TT-CTAAAA-----TGTTT-CGAAATTTGTTTGCTGATTCAGGCTTTTGATTCTGGAA-TCTATTCCATCT-TCTAT---A-GAACG------T---A-C--AAATTCCATTAAT-CAGATCAAAGCTTTACATTTACAAT
gi|79823 : TATC-TCAAAGATTTA-TTACTCTTAA-TATTTA------AAGT-TCATACGC-CTATAACAGTACGCCCATTC-TTTGATATACAGC--------------CATATTCTCTA--AAGCC----------AAA-----TATT---GAAA--CATTT-CT--TTCAGGATCGTATTTGTAGAAACCCATTCCA--T-TATAT---G-TAAAG------T---GCC--AAA---TGTAAA---AG---------TTATATTTACAAT
gi|79826 : TATTTACTC-TAA-CAGTTA------ATGT-TCATACACGC----ACA------TCGTCC-TCAAATTTACAGT--------------TGTATTCTCCT--AGGCCTAA-TT-CTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAATTTTATTCCGTCT-TATAT---A-AAAAA------T---G-C--AAATTCTATTAAT-CTGTTCAAAACTTTATATTGACAATt
gi|79825 : TATTGA-TC-TAA-TAGCTA------ATGT-TCATAGACGC----ACACTACGGTCATCC-TATAATTTACAGT--------------TTTATTTTCCT--TAGCTTAA-TT-CTAAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAACTCTATTTCGTCT-TACCT---A-AAACA------T---G-C--AAATTCTATTAAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79827 : ----ACAGTTCGGTCATCC-TCTAATCTACAGT--------------TGTATTCTCCG--AAGCCTAA-TT-CTGAAA-----TGTTT-TGAAATTCGTTTGCTTATTCAGGCTCTTGTGTGTGGAACTCTATTCT---T-T-TAT---A-AAAAA------T---G-C--AATTTCTATTAAT-CAGTTCAAAGCTTTATATTTACAGT
gi|79828 : CGTTCATCA-TCTAATCTACAGT--------------GGTATTCTCCT--AAGCC-AA-ATACTAAAC-----TGTTT-CGCCATGCGTTTGCTTTTTCGGGCTCTTGTTGATGGAACACAATTCCATCG-TATAT---A-AAAAA------T---C-C--AAATTATATTAAT-CAGCTTAAAGCTTTATGTTTA
gi|79829 : attgCGACCATCT-CCTAATTTACAAT--------------TATATTCTCCT--AAGTCAAA-TT-TTGAAAACAATCGTT------ATTCGTTTGTTTATTCAGGCATTTGTTTGTGCAAATCTATTTCATCA-TGTAT---A-AAAAA------C---G-C--AAAT------ACT-CTGTTCAAAGCTTATTATTTACAAT
gi|79830 : ta-TCTAATCTACAGT--------------TGTATTCTCCT--AAGTCTAA-TT-CTGAAA-----TGTTT-CGAAATGCGTTT-CTTATTCAGGTTCTTCTTTATGGAACTCTATTACGTCT-TATAT-----AAAAA------T---G-C--TAATTCTGTTAAT-AAGTTCAAAGCTTTATATTTACGAT
gi|79831 : ACAAT--------------TGTAT---CCT--AAGCCAAA-TT-CTGAAA-----TGTTT-CGTCATTCGTTTACTTATTAAGGCTTTTGTTTGTGGAACTTTATTCCATCA-TATAT---T-GAAAA------T---G-C--AAA---TAT--AT-CAATT----ACTTTATATT
gi|79832 : CAAT--------------TGTAT---CCT--AAGCCAAA-TT-CTGAAA-----TGTTA-CGTCATTCGTTTGCTTATTAAGGCTCTTGTTTGTGGAACTGTATTCCATCA-TATAT---T-GAAAA------T---G-C--AAaatattt
gi|79833 : TATTCTCCT--AAGCCTAA-TT-CTGAAA-----TGTAT-CGAAATTTATTTGCTTATTCAGGCTCTTCTTTGTGGAACTCTTTTTCGTCT-TATAT---A-AAAAA------T---G-C--AAATTCTATTAAT-CAGTTCTAAGCTTTATGTTTACggaatattgatttcaaa
gi|79834 : TCTCCT--TAGCCTAA-TT-CTGAAA-----TGTTT-TGAAATTCATTGGCTTATTGAGGCTCTGGTTTGTGGAACTCTATTCCGTCT-TATAT---A-AAGAA------T---G-C--AAGTTCTTTTAAT-CAGTTCAA
gi|79835 : AA-TT-CTGAAA-----TGTTT-CCAAAATCGTTTGCTTATTCAGGTTTTTGTTTGAGAAATTTTATTCCATCT-TATAT-----ATAAA------T---G-C--AAATACAATTGAT-CAGTTCAAAGCTTTACATTT
gi|79836 : -----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTCCTTGTGGAACTCTATTCCATCT-TATAT---A-AAAAA------T---G-C--AAATTCTATTAAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79837 : TTT-TGGAATTCGTTTGCTTATTCAGGCTCTAGTTTGTGGAACTCTGTACTGTCT-TAAAT-----AAAAA------T---G-C--AAATTTTATTAAT-TAACTCAAAGCTTTATATTTACAAT
gi|79838 : GAAATCCGTTTGCTTATTCAGGCTCTTGTTTGTGGAACTCTTTTCCATCT-TATATAAAA-AAAAA------T---G-C--AAATTCTATTAAT-CA
gi|79818 : TTGTTTTTGCAAGCTCTTGCTTGTTGAACTATTTTCAATCA-TTTAT---A-AAA-A------T---G-C--AAATACTTTTGAT-TAGTTAAAAACTTTATTTTTAa
gi|79839 : gctcctgcatacctcaaatgtgtatatactgttacagctacatgtaacgtccatacacgtacattacggccatcctctaatctacaaTTGTGGAACTCTGTTCCATCT-TATAT---A-AAAAA------AAAAG-T--AAATCCTATTAAT-CAGTTCAAAGCTTTATATTTACAAT
Alignments
lowQualScore : 1111111111
lowQualScore : 2 1 1 555555 1 3333 1 99999999999999 1 22 2 1 33333 1 0000000000 333333 222 11 1
lowQualScore : . . . ...... . .... . .............. . .. . . ..... . .......... ...... ... .. .
lowQualScore : 1 9 9 555555 9 9999 6 00000000000000 4 00 0 4 44444 3 5555555555 888888 333 88 4
consensus : GCTCCTGCATATC-TCAAAGATTTATTTACTCT-AA-CAGCTA------ATGT-TCATACACGC----ACATTACGGTCATCC-TCTAATCTACAGT--------------TGTATTCTCC-T--AAGCCNAA-TTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAACTCTATTCCGTCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CAGTTCAAAGCTTTATATTTACAAT
Reference ( family-601 ) : GCTCCTGCATATC-TCAAAGATTTATTTACTCT-AA-CAGCTA------ATGT-TCATACACGC----ACATTACGGTCATCC-TCTAATCTACAGT--------------TGTATTCTCC-T--AAGCCNAA-TTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAACTCTATTCCGTCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79806 : GCTCCTGCATATC-TCAAAGATTTATTTACTCC-AA-CAGCTA------ATGT-TCATACACGC----ACACTTCGGTCATCC-TCTAATCTACAGT--------------TGTATTCTCC-T--AGGCCTAA-GTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTCCTTGTGGAACTCTATTCTATCTTACAT---A------AAAAA------T---GC--AAATTCTATAAAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79807 : GCTCCTGCATATC-TCAAAGATTTATTTACTCC-AA-CAGCTA------ATAT-TAATACACGC----ACACTACGGCCATCC-TCTAATCTACAGT--------------TGTTTTCTCC-T--AAGCCTAA-TTCTGAAA-----TATTT-CGAAATTCGTTTGCTTATTCAGGCTCTT-TTTGTGGAACTCTATTCCGTCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CAGTTCAAAGCATTATATTTACGAT
gi|79808 : GCTCCTGCATATC-TCAAAGATTTATTTGCTCT-AA-CAGCCA------ATGT-TCATACACGC----ACATTACGGCCATCC-TCTAATTTACAGT--------------TGAATTCTCC-T--AAGTCTAA-TTCTGGAA-----TGTTT-CGATATTCGTTTACTTATTTAAGCTCTTGTTTGTGGAACTCTATTCCGTCTTATAT---A------AAAAA------T---TC--AAATTCTATTGAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79809 : GCTCATGCATATC-TGAAAGATTTATTTACTCT-AA-CAGCTT------ATGT-----ACACAC----ACACTACGGTCATTC-TCTAATCTACAAT--------------TGTATTCTCC-T--AAGCCTAA-TTCTGCAA-----TGAGT-CGAAATTCGTTTGCTTATTTAGGCTCTTCTTTGTGGAACTCTATTCCATCTTATAT----------AAAAA------T---GC--AAATTCTATTTAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79810 : GCTGCTGCATATA-TAAAAGATTTATGTACTCT-AA-CTGCTA------ATGT-CCATACACGC----ACACTACGGTCATTC-TCTAATCTACAGT--------------TTAATTTTCC-T--AAGCCAGA-TTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGTCTCTTGTTTGTGGAACTGTATTCCGTCTTTTAT---A------AAAAAAAAACCC---GCAAAAATTCTATTAAT-CAGTTCAAAGCTTTATATTTAAAAT
gi|79811 : GCACCTGCATATC-TCAAAGATTTGTTTACCCT-TA-CAGCTA------AAGT-GCATACACGT----ACATTACGGTCATCC-TCTAATCTACAGT--------------TGTACTCCCC-T--ACGCTAAA-TTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAATTCTATTCGATCTTAT-T---A-------------------------------TATTAGT-CAGATCAAAGCTTTATATTTACCAT
gi|79812 : GCCCCTGCATATT-TCAAATATTTATTTACTCT-AA-CAGCTA------ATGT-TCATGAACGT----ACATTAC---CATC----------ATAGC--------------TGTATTCTCC-T--AAGCCAAA-TTCTGAAA-----TATTT-CGAAATACGTTTGCTAATTCAGGCTCTTGTTTGTGGAATTTTATTCCATGTTATAT---AT-----AAGAA------T---GC--AAATTATATTAAT-CAGTTCAAAGTTTTGTATTTACAAT
gi|79813 : GCTCATGCATATC-TCAGAGATGTTTTTACTCT-AA-CAGCTG------ATAC-TCATACACGC----ACATTACGGTCATCC-TCTAATCTACAGTTGTACATTGTATTCTGTATTCTCT-T--AAGCCGAA-TTCTGAAA-----TATTT-CGAAATTCGTTTGCTTTTTCACGCTCTTGTTTGTGGAACATTTTTCCCTCTTTTAT----------AAAAA------T---GC--TTATTCCATTAAG-CAGTTCAAAGCTTTATATTTGCAAT
gi|79814 : GCTCCTTCATATC-TCGAAGATTCATTTACTCT-AA-CAGCTA------ATGT-TCATACACAA----ATATTATGATCATCC-TCTAATCTA--GT--------------TGTATTCTCC-C--GAGTCCAA-TTTTGAAA-----TGTTT-CAAAATTC------------------TTGTTTGTGGAACTCTATTCCGTCTTATAT---A------AAAAA------T---GC----------TTAATCCAATTCAAAGCTTTATATTAAAAAT
gi|79815 : GTTCCTGCATATC-TCAAAGATTTACTTACTCT-AA-CAACTG------ATGT-TCATTCACGC----ACATTACGGTCAACC-TCTAATATACAGG--------------TGTTTTCTCC-T--AAGCCTAA-TACTGAAA-----TGTTT-CGAAATTCATTTGCTTATTCAGGCTCTTGTTTGT
gi|79816 : GCTCTTGCATATC-TCAAAGATTTATTTACTCC-AA-CCGCTA------ATGT-TCATACACGC----AAACTACGGTCATCC-TCTAATTTAAAGT--------------TGTATACTCC-T--AAGCCTAG-TTATGAAA-----CGTAT-CGAAATTCGTTTGCTTATTCAGGCTCTTAT
gi|79817 : GCTCTTGCATATC-TCAAAGAATTATTTACTCT-TGTCAGCCA------ATGT-TCATACACGC----ACATCACGGCCATCCGTTTAATCGACAGT--------------TGTAATCTCCAT--A--TCAAA-TTCTGAAA-----TGTCA-CGAAATTCGTTTGCTTATTCAGACTCTTGT-------A---TAGTCCGTCATATAT---ATATAAAAAAAA------T---GC--AAATT
gi|79818 : GCTCCTGCATACC-TCAAATGTGTATATACTGT-TA-CAGCTACATGTAACGT-CCATACACGT----ACATTACGGCCATCC-TCTAATCTACAAT--------------TGT-TTTTGC----AAGC
gi|79818 : TTGTTTTTGCAAGCTCTTGCTTGTTGAACTATTTTCAATCATTTAT---A------AAA-A------T---GC--AAATACTTTTGAT-TAGTTAAAAACTTTATTTTTAtcttgcttgttgaactattttcaatcatttataaaaatgcaaatacttttgattagttaaaaactttattttta
gi|79819 : gctcctgcatacctcaaatgtgtatatactgttacagctacatgtaacgtccatacacgtacattacggccatcctctaatctacaaCTCCTGCATATC-TCAAAGATTTATTTACTCT-AC-CAGCTA------ATGT-TCATACACAC----ACATTACGGTCATCC-TCTAATCTACAGT--------------TGTATTCCCC-CCAAAGTCAAATTTCTGAAA-----TGTTTAAGAAATCCGTTTGTTAATGTAAGCTCAAGTATGTGAAACTCTATTCCGTCATATAT---A------GAAAA------T---GC--AAATTATATTAAT-CACTTCAAAGCTTTATATTTACAAT
gi|79820 : CTCCTGCATATC-TCAAATATTTATTTACTCT-AA-CAGCTA------ATGT-TCATACATGC----ACACTACAGTCATCC-TCTAATCTACAG
gi|79821 : CTTCTGCATATCATCAAAGATATATTTACTT------AG-----------GC-TCATACGGGT-----TGTT----TTATTT-T----TCCACAGT--------------TGTATTTTCC-T--AAGCCAAA-TACTGAAA-----TGTTT-CGCCAATGGTTTACTTACATAGGCTCTTGTT
gi|79822 : TGCATATC-TCTAAGAATGATATACTTT-AA-CAG------------T-TCATACACGT----ACATTACAGTCATCC-TCTTATCTACAGT--------------TGTA-----------------A-TTCTAAAA-----TGTTT-CGAAATTTGTTTGCTGATTCAGGCTTTTGATTCTGGAA-TCTATTCCATCTTCTAT---A------GAACG------T---AC--AAATTCCATTAAT-CAGATCAAAGCTTTACATTTACAATgtttacttcaggtgcttatat
gi|79823 : TATC-TCAAAGATTTATT-ACTCTTAA-TATTTA------AAGT-TCATACGC-CTATAACAGTACGCCCATTC-TTTGATATACAGC--------------CATATTCTCT-A--AAGCCAAA-TATTGAAA-----CATTT-C----T-----------TTCAGGATCGTATTTGTAGAAACCCATTCCA--TTATAT---G------TAAAG------T---GC--CAAATGTA------------AAAG--TTATATTTACAAT
gi|79824 : CTGCGTATC-TTACAG-CTTATTTGC-------------------ATATCTCAAACA-GC----ACAGTACGGTCATCC-TCTAATCTACAAT--------------TGT------------------A-TTCCGAAA-----TGTTT-TGAAATTCGTTTGCTTATTCGGGCTCTTGTTTGTGAAACTCTATTCCGTCTAATAT----------TAAAA------C---GA--AAATTCTGTTAAT-CAGTTCAAAGCCTTATATTTACAATt
gi|79825 : aaagcttatTATTGA-TCT-AA-TAGCTA------ATGT-TCATAGACGC----ACACTACGGTCATCC-TATAATTTACAGT--------------TTTATTTTCC-T--TAGCTTAA-TTCTAAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAACTCTATTTCGTCTTACCT---A------AAACA------T---GC--AAATTCTATTAAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79826 : TATTTACTCT-AA-CAGTTA------ATGT-TCATACACGC----ACAT------CGTCC-TCAAATTTACAGT--------------TGTATTCTCC-T--AGGCCTAA-TTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAATTTTATTCCGTCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CTGTTCAAAACTTTATATTGACAAT
gi|79827 : ----ACAGTTCGGTCATCC-TCTAATCTACAGT--------------TGTATTCTCC-G--AAGCCTAA-TTCTGAAA-----TGTTT-TGAAATTCGTTTGCTTATTCAGGCTCTTGTGTGTGGAACTCTAT----TCTTTTAT---A------AAAAA------T---GC--AATTTCTATTAAT-CAGTTCAAAGCTTTATATTTACAGT
gi|79828 : ATTGCGTTCATCA-TCTAATCTACAGT--------------GGTATTCTCC-T--AAGCCAAA-TACTAAAC-----TGTTT-CGCCATGCGTTTGCTTTTTCGGGCTCTTGTTGATGGAACACAATTCCATCGTATAT---A------AAAAA------T---CC--AAATTATATTAAT-CAGCTTAAAGCTTTATGTTTA
gi|79829 : TACGACCATCT-CCTAATTTACAAT--------------TATATTCTCC-T--AAGTCAAA-TTTTGAAAACAATCGTT------ATTCGTTTGTTTATTCAGGCATTTGTTTGTGCAAATCTATTTCATCATGTAT---A------AAAAA------C---GC--AAA------TACT-CTGTTCAAAGCTTATTATTTACAAT
gi|79830 : -TCTAATCTACAGT--------------TGTATTCTCC-T--AAGTCTAA-TTCTGAAA-----TGTTT-CGAAATGCGTTT-CTTATTCAGGTTCTTCTTTATGGAACTCTATTACGTCTTATAT----------AAAAA------T---GC--TAATTCTGTTAAT-AAGTTCAAAGCTTTATATTTACGAT
gi|79831 : ACAAT--------------TGTAT---CC-T--AAGCCAAA-TTCTGAAA-----TGTTT-CGTCATTCGTTTACTTATTAAGGCTTTTGTTTGTGGAACTTTATTCCATCATATAT---T------GAAAA------T---GC--AAA---TAT--AT-CAATT----ACTTTATATT
gi|79832 : CAAT--------------TGTAT---CC-T--AAGCCAAA-TTCTGAAA-----TGTTA-CGTCATTCGTTTGCTTATTAAGGCTCTTGTTTGTGGAACTGTATTCCATCATATAT---T------GAAAA------T---GC--AAGGAATATTGAT----TTCAAAaatattt
gi|79833 : TATTCTCC-T--AAGCCTAA-TTCTGAAA-----TGTAT-CGAAATTTATTTGCTTATTCAGGCTCTTCTTTGTGGAACTCTTTTTCGTCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CAGTTCTAAGCTTTATGTTTAC
gi|79834 : TCTCC-T--TAGCCTAA-TTCTGAAA-----TGTTT-TGAAATTCATTGGCTTATTGAGGCTCTGGTTTGTGGAACTCTATTCCGTCTTATAT---A------AAGAA------T---GC--AAGTTCTTTTAAT-CAGTTCAA
gi|79835 : AA-TTCTGAAA-----TGTTT-CCAAAATCGTTTGCTTATTCAGGTTTTTGTTTGAGAAATTTTATTCCATCTTATAT----------ATAAA------T---GC--AAATACAATTGAT-CAGTTCAAAGCTTTACATTT
gi|79836 : -----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTCCTTGTGGAACTCTATTCCATCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79837 : TTT-TGGAATTCGTTTGCTTATTCAGGCTCTAGTTTGTGGAACTCTGTACTGTCTTAAAT----------AAAAA------T---GC--AAATTTTATTAAT-TAACTCAAAGCTTTATATTTACAAT
gi|79838 : GAAATCCGTTTGCTTATTCAGGCTCTTGTTTGTGGAACTCTTTTCCATCTTATATAAAA------AAAAA------T---GC--AAATTCTATTAAT-CA
gi|79839 : CTCGTTTGTGGAACTCTGTTCCATCTTATAT---A------AAAAA------AAAAGT--AAATCCTATTAAT-CAGTTCAAAGCTTTATATTTACAATa
Alignments
lowQualScore : 1111111111
lowQualScore : 2 1 1 555555 1 3333 1 99999999999999 1 22 2 1 33333 1 0000000000 333333 222 11 1
lowQualScore : . . . ...... . .... . .............. . .. . . ..... . .......... ...... ... .. .
lowQualScore : 1 9 9 555555 9 9999 6 00000000000000 4 00 0 4 44444 3 5555555555 888888 333 88 4
consensus : GCTCCTGCATATC-TCAAAGATTTATTTACTCT-AA-CAGCTA------ATGT-TCATACACGC----ACATTACGGTCATCC-TCTAATCTACAGT--------------TGTATTCTCC-T--AAGCCNAA-TTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAACTCTATTCCGTCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CAGTTCAAAGCTTTATATTTACAAT
Reference ( family-601 ) : GCTCCTGCATATC-TCAAAGATTTATTTACTCT-AA-CAGCTA------ATGT-TCATACACGC----ACATTACGGTCATCC-TCTAATCTACAGT--------------TGTATTCTCC-T--AAGCCNAA-TTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAACTCTATTCCGTCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79806 : GCTCCTGCATATC-TCAAAGATTTATTTACTCC-AA-CAGCTA------ATGT-TCATACACGC----ACACTTCGGTCATCC-TCTAATCTACAGT--------------TGTATTCTCC-T--AGGCCTAA-GTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTCCTTGTGGAACTCTATTCTATCTTACAT---A------AAAAA------T---GC--AAATTCTATAAAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79807 : GCTCCTGCATATC-TCAAAGATTTATTTACTCC-AA-CAGCTA------ATAT-TAATACACGC----ACACTACGGCCATCC-TCTAATCTACAGT--------------TGTTTTCTCC-T--AAGCCTAA-TTCTGAAA-----TATTT-CGAAATTCGTTTGCTTATTCAGGCTCTT-TTTGTGGAACTCTATTCCGTCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CAGTTCAAAGCATTATATTTACGAT
gi|79808 : GCTCCTGCATATC-TCAAAGATTTATTTGCTCT-AA-CAGCCA------ATGT-TCATACACGC----ACATTACGGCCATCC-TCTAATTTACAGT--------------TGAATTCTCC-T--AAGTCTAA-TTCTGGAA-----TGTTT-CGATATTCGTTTACTTATTTAAGCTCTTGTTTGTGGAACTCTATTCCGTCTTATAT---A------AAAAA------T---TC--AAATTCTATTGAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79809 : GCTCATGCATATC-TGAAAGATTTATTTACTCT-AA-CAGCTT------ATGT-----ACACAC----ACACTACGGTCATTC-TCTAATCTACAAT--------------TGTATTCTCC-T--AAGCCTAA-TTCTGCAA-----TGAGT-CGAAATTCGTTTGCTTATTTAGGCTCTTCTTTGTGGAACTCTATTCCATCTTATAT----------AAAAA------T---GC--AAATTCTATTTAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79810 : GCTGCTGCATATA-TAAAAGATTTATGTACTCT-AA-CTGCTA------ATGT-CCATACACGC----ACACTACGGTCATTC-TCTAATCTACAGT--------------TTAATTTTCC-T--AAGCCAGA-TTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGTCTCTTGTTTGTGGAACTGTATTCCGTCTTTTAT---A------AAAAAAAAACCC---GCAAAAATTCTATTAAT-CAGTTCAAAGCTTTATATTTAAAAT
gi|79811 : GCACCTGCATATC-TCAAAGATTTGTTTACCCT-TA-CAGCTA------AAGT-GCATACACGT----ACATTACGGTCATCC-TCTAATCTACAGT--------------TGTACTCCCC-T--ACGCTAAA-TTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAATTCTATTCGATCTTAT-T---A-------------------------------TATTAGT-CAGATCAAAGCTTTATATTTACCAT
gi|79812 : GCCCCTGCATATT-TCAAATATTTATTTACTCT-AA-CAGCTA------ATGT-TCATGAACGT----ACATTAC---CATC----------ATAGC--------------TGTATTCTCC-T--AAGCCAAA-TTCTGAAA-----TATTT-CGAAATACGTTTGCTAATTCAGGCTCTTGTTTGTGGAATTTTATTCCATGTTATAT---AT-----AAGAA------T---GC--AAATTATATTAAT-CAGTTCAAAGTTTTGTATTTACAAT
gi|79813 : GCTCATGCATATC-TCAGAGATGTTTTTACTCT-AA-CAGCTG------ATAC-TCATACACGC----ACATTACGGTCATCC-TCTAATCTACAGTTGTACATTGTATTCTGTATTCTCT-T--AAGCCGAA-TTCTGAAA-----TATTT-CGAAATTCGTTTGCTTTTTCACGCTCTTGTTTGTGGAACATTTTTCCCTCTTTTAT----------AAAAA------T---GC--TTATTCCATTAAG-CAGTTCAAAGCTTTATATTTGCAAT
gi|79814 : GCTCCTTCATATC-TCGAAGATTCATTTACTCT-AA-CAGCTA------ATGT-TCATACACAA----ATATTATGATCATCC-TCTAATCTA--GT--------------TGTATTCTCC-C--GAGTCCAA-TTTTGAAA-----TGTTT-CAAAATTC------------------TTGTTTGTGGAACTCTATTCCGTCTTATAT---A------AAAAA------T---GC----------TTAATCCAATTCAAAGCTTTATATTAAAAAT
gi|79815 : GTTCCTGCATATC-TCAAAGATTTACTTACTCT-AA-CAACTG------ATGT-TCATTCACGC----ACATTACGGTCAACC-TCTAATATACAGG--------------TGTTTTCTCC-T--AAGCCTAA-TACTGAAA-----TGTTT-CGAAATTCATTTGCTTATTCAGGCTCTTGTTTGT
gi|79816 : GCTCTTGCATATC-TCAAAGATTTATTTACTCC-AA-CCGCTA------ATGT-TCATACACGC----AAACTACGGTCATCC-TCTAATTTAAAGT--------------TGTATACTCC-T--AAGCCTAG-TTATGAAA-----CGTAT-CGAAATTCGTTTGCTTATTCAGGCTCTTAT
gi|79817 : GCTCTTGCATATC-TCAAAGAATTATTTACTCT-TGTCAGCCA------ATGT-TCATACACGC----ACATCACGGCCATCCGTTTAATCGACAGT--------------TGTAATCTCCAT--A--TCAAA-TTCTGAAA-----TGTCA-CGAAATTCGTTTGCTTATTCAGACTCTTGT-------A---TAGTCCGTCATATAT---ATATAAAAAAAA------T---GC--AAATT
gi|79818 : GCTCCTGCATACC-TCAAATGTGTATATACTGT-TA-CAGCTACATGTAACGT-CCATACACGT----ACATTACGGCCATCC-TCTAATCTACAAT--------------TGT-TTTTGC----AAGC
gi|79818 : TTGTTTTTGCAAGCTCTTGCTTGTTGAACTATTTTCAATCATTTAT---A------AAA-A------T---GC--AAATACTTTTGAT-TAGTTAAAAACTTTATTTTTAtcttgcttgttgaactattttcaatcatttataaaaatgcaaatacttttgattagttaaaaactttattttta
gi|79819 : gctcctgcatacctcaaatgtgtatatactgttacagctacatgtaacgtccatacacgtacattacggccatcctctaatctacaaCTCCTGCATATC-TCAAAGATTTATTTACTCT-AC-CAGCTA------ATGT-TCATACACAC----ACATTACGGTCATCC-TCTAATCTACAGT--------------TGTATTCCCC-CCAAAGTCAAATTTCTGAAA-----TGTTTAAGAAATCCGTTTGTTAATGTAAGCTCAAGTATGTGAAACTCTATTCCGTCATATAT---A------GAAAA------T---GC--AAATTATATTAAT-CACTTCAAAGCTTTATATTTACAAT
gi|79820 : CTCCTGCATATC-TCAAATATTTATTTACTCT-AA-CAGCTA------ATGT-TCATACATGC----ACACTACAGTCATCC-TCTAATCTACAG
gi|79821 : CTTCTGCATATCATCAAAGATATATTTACTT------AG-----------GC-TCATACGGGT-----TGTT----TTATTT-T----TCCACAGT--------------TGTATTTTCC-T--AAGCCAAA-TACTGAAA-----TGTTT-CGCCAATGGTTTACTTACATAGGCTCTTGTT
gi|79822 : TGCATATC-TCTAAGAATGATATACTTT-AA-CAG------------T-TCATACACGT----ACATTACAGTCATCC-TCTTATCTACAGT--------------TGTA-----------------A-TTCTAAAA-----TGTTT-CGAAATTTGTTTGCTGATTCAGGCTTTTGATTCTGGAA-TCTATTCCATCTTCTAT---A------GAACG------T---AC--AAATTCCATTAAT-CAGATCAAAGCTTTACATTTACAATgtttacttcaggtgcttatat
gi|79823 : TATC-TCAAAGATTTATT-ACTCTTAA-TATTTA------AAGT-TCATACGC-CTATAACAGTACGCCCATTC-TTTGATATACAGC--------------CATATTCTCT-A--AAGCCAAA-TATTGAAA-----CATTT-C----T-----------TTCAGGATCGTATTTGTAGAAACCCATTCCA--TTATAT---G------TAAAG------T---GC--CAAATGTA------------AAAG--TTATATTTACAAT
gi|79824 : CTGCGTATC-TTACAG-CTTATTTGC-------------------ATATCTCAAACA-GC----ACAGTACGGTCATCC-TCTAATCTACAAT--------------TGT------------------A-TTCCGAAA-----TGTTT-TGAAATTCGTTTGCTTATTCGGGCTCTTGTTTGTGAAACTCTATTCCGTCTAATAT----------TAAAA------C---GA--AAATTCTGTTAAT-CAGTTCAAAGCCTTATATTTACAATt
gi|79825 : aaagcttatTATTGA-TCT-AA-TAGCTA------ATGT-TCATAGACGC----ACACTACGGTCATCC-TATAATTTACAGT--------------TTTATTTTCC-T--TAGCTTAA-TTCTAAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAACTCTATTTCGTCTTACCT---A------AAACA------T---GC--AAATTCTATTAAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79826 : TATTTACTCT-AA-CAGTTA------ATGT-TCATACACGC----ACAT------CGTCC-TCAAATTTACAGT--------------TGTATTCTCC-T--AGGCCTAA-TTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAATTTTATTCCGTCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CTGTTCAAAACTTTATATTGACAAT
gi|79827 : ----ACAGTTCGGTCATCC-TCTAATCTACAGT--------------TGTATTCTCC-G--AAGCCTAA-TTCTGAAA-----TGTTT-TGAAATTCGTTTGCTTATTCAGGCTCTTGTGTGTGGAACTCTAT----TCTTTTAT---A------AAAAA------T---GC--AATTTCTATTAAT-CAGTTCAAAGCTTTATATTTACAGT
gi|79828 : ATTGCGTTCATCA-TCTAATCTACAGT--------------GGTATTCTCC-T--AAGCCAAA-TACTAAAC-----TGTTT-CGCCATGCGTTTGCTTTTTCGGGCTCTTGTTGATGGAACACAATTCCATCGTATAT---A------AAAAA------T---CC--AAATTATATTAAT-CAGCTTAAAGCTTTATGTTTA
gi|79829 : TACGACCATCT-CCTAATTTACAAT--------------TATATTCTCC-T--AAGTCAAA-TTTTGAAAACAATCGTT------ATTCGTTTGTTTATTCAGGCATTTGTTTGTGCAAATCTATTTCATCATGTAT---A------AAAAA------C---GC--AAA------TACT-CTGTTCAAAGCTTATTATTTACAAT
gi|79830 : -TCTAATCTACAGT--------------TGTATTCTCC-T--AAGTCTAA-TTCTGAAA-----TGTTT-CGAAATGCGTTT-CTTATTCAGGTTCTTCTTTATGGAACTCTATTACGTCTTATAT----------AAAAA------T---GC--TAATTCTGTTAAT-AAGTTCAAAGCTTTATATTTACGAT
gi|79831 : ACAAT--------------TGTAT---CC-T--AAGCCAAA-TTCTGAAA-----TGTTT-CGTCATTCGTTTACTTATTAAGGCTTTTGTTTGTGGAACTTTATTCCATCATATAT---T------GAAAA------T---GC--AAA---TAT--AT-CAATT----ACTTTATATT
gi|79832 : CAAT--------------TGTAT---CC-T--AAGCCAAA-TTCTGAAA-----TGTTA-CGTCATTCGTTTGCTTATTAAGGCTCTTGTTTGTGGAACTGTATTCCATCATATAT---T------GAAAA------T---GC--AAGGAATATTGAT----TTCAAAaatattt
gi|79833 : TATTCTCC-T--AAGCCTAA-TTCTGAAA-----TGTAT-CGAAATTTATTTGCTTATTCAGGCTCTTCTTTGTGGAACTCTTTTTCGTCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CAGTTCTAAGCTTTATGTTTAC
gi|79834 : TCTCC-T--TAGCCTAA-TTCTGAAA-----TGTTT-TGAAATTCATTGGCTTATTGAGGCTCTGGTTTGTGGAACTCTATTCCGTCTTATAT---A------AAGAA------T---GC--AAGTTCTTTTAAT-CAGTTCAA
gi|79835 : AA-TTCTGAAA-----TGTTT-CCAAAATCGTTTGCTTATTCAGGTTTTTGTTTGAGAAATTTTATTCCATCTTATAT----------ATAAA------T---GC--AAATACAATTGAT-CAGTTCAAAGCTTTACATTT
gi|79836 : -----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTCCTTGTGGAACTCTATTCCATCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79837 : TTT-TGGAATTCGTTTGCTTATTCAGGCTCTAGTTTGTGGAACTCTGTACTGTCTTAAAT----------AAAAA------T---GC--AAATTTTATTAAT-TAACTCAAAGCTTTATATTTACAAT
gi|79838 : GAAATCCGTTTGCTTATTCAGGCTCTTGTTTGTGGAACTCTTTTCCATCTTATATAAAA------AAAAA------T---GC--AAATTCTATTAAT-CA
gi|79839 : CTCGTTTGTGGAACTCTGTTCCATCTTATAT---A------AAAAA------AAAAGT--AAATCCTATTAAT-CAGTTCAAAGCTTTATATTTACAATa
blockSeqs : A T T CATGTA C TATA G TGTACATTGTATTC A CA T T ACAAT A ATATAAA AAAACC AAA AA C
blockSeqs : . . . . . . . . . . T . . . AAAA . . . .
blockSeqs : . . . . . . . . . . T . . . AT . . . .
blockSeqs : . . . . . . . . . . A . . . A . . . .
blockSeqs : . . . . . . . . . . A . . . A . . . .
blockSeqs : . . . . . . . . . . A . . . A . . . .
blockSeqs : . . . . . . . . . . G . . . A . . . .
blockSeqs : . . . . . . . . . . C . . . A . . . .
blockSeqs : . . . . . . . . . . T . . . A . . . .
blockSeqs : . . . . . . . . . . T . . . A . . . .
blockSeqs : . . . . . . . . . . A . . . A . . . .
blockSeqs : . . . . . . . . . . A . . . G . . . .
blockSeqs : . . . . . . . . . . A . . . A . . . .
blockSeqs : . . . . . . . . . . A . . . A . . . .
blockSeqs : . . . . . . . . . . T . . . A . . . .
blockSeqs : . . . . . . . . . . T . . . A . . . .
blockSeqs : . . . . . . . . . . T . . . A . . . .
blockSeqs : . . . . . . . . . . A . . . T . . . .
blockSeqs : . . . . . . . . . A . . . T . . . .
blockSeqs : . . . . . . . . . T . . . A . . . .
blockSeqs : . . . . . A . . . A . . . .
blockSeqs : . . . . A . . . A . . . .
blockSeqs : . . . . T . . . A . . . .
blockSeqs : . . . . T . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : GCTCCTGCATATC-TCAAAGATTTATTTACTCT-AA-CAGCTA------ATGT-TCATACACGC----ACATTACGGTCATCC-TCTAATCTACAGT--------------TGTATTCTCC-T--AAGCCNAA-TTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAACTCTATTCCGTCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CAGTTCAAAGCTTTATATTTACAAT
finalCons : GCTCCTGCATATC-TCAAAGATTTATTTACTCT-AA-CAGCTA------ATGT-TCATACACGC----ACATTACGGTCATCC-TCTAATCTACAGT--------------TGTATTCTCC-T--AAGCCNAA-TTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAACTCTATTCCGTCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CAGTTCAAAGCTTTATATTTACAAT
Alignments
lowQualScore : 1111111111
lowQualScore : 2 1 1 555555 1 3333 1 99999999999999 1 22 2 1 33333 1 0000000000 333333 222 11 1
lowQualScore : . . . ...... . .... . .............. . .. . . ..... . .......... ...... ... .. .
lowQualScore : 1 9 9 555555 9 9999 6 00000000000000 4 00 0 4 44444 3 5555555555 888888 333 88 4
consensus : GCTCCTGCATATC-TCAAAGATTTATTTACTCT-AA-CAGCTA------ATGT-TCATACACGC----ACATTACGGTCATCC-TCTAATCTACAGT--------------TGTATTCTCC-T--AAGCCNAA-TTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAACTCTATTCCGTCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CAGTTCAAAGCTTTATATTTACAAT
Reference ( family-601 ) : GCTCCTGCATATC-TCAAAGATTTATTTACTCT-AA-CAGCTA------ATGT-TCATACACGC----ACATTACGGTCATCC-TCTAATCTACAGT--------------TGTATTCTCC-T--AAGCCNAA-TTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAACTCTATTCCGTCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79806 : GCTCCTGCATATC-TCAAAGATTTATTTACTCC-AA-CAGCTA------ATGT-TCATACACGC----ACACTTCGGTCATCC-TCTAATCTACAGT--------------TGTATTCTCC-T--AGGCCTAA-GTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTCCTTGTGGAACTCTATTCTATCTTACAT---A------AAAAA------T---GC--AAATTCTATAAAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79807 : GCTCCTGCATATC-TCAAAGATTTATTTACTCC-AA-CAGCTA------ATAT-TAATACACGC----ACACTACGGCCATCC-TCTAATCTACAGT--------------TGTTTTCTCC-T--AAGCCTAA-TTCTGAAA-----TATTT-CGAAATTCGTTTGCTTATTCAGGCTCTT-TTTGTGGAACTCTATTCCGTCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CAGTTCAAAGCATTATATTTACGAT
gi|79808 : GCTCCTGCATATC-TCAAAGATTTATTTGCTCT-AA-CAGCCA------ATGT-TCATACACGC----ACATTACGGCCATCC-TCTAATTTACAGT--------------TGAATTCTCC-T--AAGTCTAA-TTCTGGAA-----TGTTT-CGATATTCGTTTACTTATTTAAGCTCTTGTTTGTGGAACTCTATTCCGTCTTATAT---A------AAAAA------T---TC--AAATTCTATTGAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79809 : GCTCATGCATATC-TGAAAGATTTATTTACTCT-AA-CAGCTT------ATGT-----ACACAC----ACACTACGGTCATTC-TCTAATCTACAAT--------------TGTATTCTCC-T--AAGCCTAA-TTCTGCAA-----TGAGT-CGAAATTCGTTTGCTTATTTAGGCTCTTCTTTGTGGAACTCTATTCCATCTTATAT----------AAAAA------T---GC--AAATTCTATTTAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79810 : GCTGCTGCATATA-TAAAAGATTTATGTACTCT-AA-CTGCTA------ATGT-CCATACACGC----ACACTACGGTCATTC-TCTAATCTACAGT--------------TTAATTTTCC-T--AAGCCAGA-TTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGTCTCTTGTTTGTGGAACTGTATTCCGTCTTTTAT---A------AAAAAAAAACCC---GCAAAAATTCTATTAAT-CAGTTCAAAGCTTTATATTTAAAAT
gi|79811 : GCACCTGCATATC-TCAAAGATTTGTTTACCCT-TA-CAGCTA------AAGT-GCATACACGT----ACATTACGGTCATCC-TCTAATCTACAGT--------------TGTACTCCCC-T--ACGCTAAA-TTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAATTCTATTCGATCTTAT-T---A-------------------------------TATTAGT-CAGATCAAAGCTTTATATTTACCAT
gi|79812 : GCCCCTGCATATT-TCAAATATTTATTTACTCT-AA-CAGCTA------ATGT-TCATGAACGT----ACATTAC---CATC----------ATAGC--------------TGTATTCTCC-T--AAGCCAAA-TTCTGAAA-----TATTT-CGAAATACGTTTGCTAATTCAGGCTCTTGTTTGTGGAATTTTATTCCATGTTATAT---AT-----AAGAA------T---GC--AAATTATATTAAT-CAGTTCAAAGTTTTGTATTTACAAT
gi|79813 : GCTCATGCATATC-TCAGAGATGTTTTTACTCT-AA-CAGCTG------ATAC-TCATACACGC----ACATTACGGTCATCC-TCTAATCTACAGTTGTACATTGTATTCTGTATTCTCT-T--AAGCCGAA-TTCTGAAA-----TATTT-CGAAATTCGTTTGCTTTTTCACGCTCTTGTTTGTGGAACATTTTTCCCTCTTTTAT----------AAAAA------T---GC--TTATTCCATTAAG-CAGTTCAAAGCTTTATATTTGCAAT
gi|79814 : GCTCCTTCATATC-TCGAAGATTCATTTACTCT-AA-CAGCTA------ATGT-TCATACACAA----ATATTATGATCATCC-TCTAATCTA--GT--------------TGTATTCTCC-C--GAGTCCAA-TTTTGAAA-----TGTTT-CAAAATTC------------------TTGTTTGTGGAACTCTATTCCGTCTTATAT---A------AAAAA------T---GC----------TTAATCCAATTCAAAGCTTTATATTAAAAAT
gi|79815 : GTTCCTGCATATC-TCAAAGATTTACTTACTCT-AA-CAACTG------ATGT-TCATTCACGC----ACATTACGGTCAACC-TCTAATATACAGG--------------TGTTTTCTCC-T--AAGCCTAA-TACTGAAA-----TGTTT-CGAAATTCATTTGCTTATTCAGGCTCTTGTTTGT
gi|79816 : GCTCTTGCATATC-TCAAAGATTTATTTACTCC-AA-CCGCTA------ATGT-TCATACACGC----AAACTACGGTCATCC-TCTAATTTAAAGT--------------TGTATACTCC-T--AAGCCTAG-TTATGAAA-----CGTAT-CGAAATTCGTTTGCTTATTCAGGCTCTTAT
gi|79817 : GCTCTTGCATATC-TCAAAGAATTATTTACTCT-TGTCAGCCA------ATGT-TCATACACGC----ACATCACGGCCATCCGTTTAATCGACAGT--------------TGTAATCTCCAT--A--TCAAA-TTCTGAAA-----TGTCA-CGAAATTCGTTTGCTTATTCAGACTCTTGT-------A---TAGTCCGTCATATAT---ATATAAAAAAAA------T---GC--AAATT
gi|79818 : GCTCCTGCATACC-TCAAATGTGTATATACTGT-TA-CAGCTACATGTAACGT-CCATACACGT----ACATTACGGCCATCC-TCTAATCTACAAT--------------TGT-TTTTGC----AAGC
gi|79818 : TTGTTTTTGCAAGCTCTTGCTTGTTGAACTATTTTCAATCATTTAT---A------AAA-A------T---GC--AAATACTTTTGAT-TAGTTAAAAACTTTATTTTTAtcttgcttgttgaactattttcaatcatttataaaaatgcaaatacttttgattagttaaaaactttattttta
gi|79819 : gctcctgcatacctcaaatgtgtatatactgttacagctacatgtaacgtccatacacgtacattacggccatcctctaatctacaaCTCCTGCATATC-TCAAAGATTTATTTACTCT-AC-CAGCTA------ATGT-TCATACACAC----ACATTACGGTCATCC-TCTAATCTACAGT--------------TGTATTCCCC-CCAAAGTCAAATTTCTGAAA-----TGTTTAAGAAATCCGTTTGTTAATGTAAGCTCAAGTATGTGAAACTCTATTCCGTCATATAT---A------GAAAA------T---GC--AAATTATATTAAT-CACTTCAAAGCTTTATATTTACAAT
gi|79820 : CTCCTGCATATC-TCAAATATTTATTTACTCT-AA-CAGCTA------ATGT-TCATACATGC----ACACTACAGTCATCC-TCTAATCTACAG
gi|79821 : CTTCTGCATATCATCAAAGATATATTTACTT------AG-----------GC-TCATACGGGT-----TGTT----TTATTT-T----TCCACAGT--------------TGTATTTTCC-T--AAGCCAAA-TACTGAAA-----TGTTT-CGCCAATGGTTTACTTACATAGGCTCTTGTT
gi|79822 : TGCATATC-TCTAAGAATGATATACTTT-AA-CAG------------T-TCATACACGT----ACATTACAGTCATCC-TCTTATCTACAGT--------------TGTA-----------------A-TTCTAAAA-----TGTTT-CGAAATTTGTTTGCTGATTCAGGCTTTTGATTCTGGAA-TCTATTCCATCTTCTAT---A------GAACG------T---AC--AAATTCCATTAAT-CAGATCAAAGCTTTACATTTACAATgtttacttcaggtgcttatat
gi|79823 : TATC-TCAAAGATTTATT-ACTCTTAA-TATTTA------AAGT-TCATACGC-CTATAACAGTACGCCCATTC-TTTGATATACAGC--------------CATATTCTCT-A--AAGCCAAA-TATTGAAA-----CATTT-C----T-----------TTCAGGATCGTATTTGTAGAAACCCATTCCA--TTATAT---G------TAAAG------T---GC--CAAATGTA------------AAAG--TTATATTTACAAT
gi|79824 : CTGCGTATC-TTACAG-CTTATTTGC-------------------ATATCTCAAACA-GC----ACAGTACGGTCATCC-TCTAATCTACAAT--------------TGT------------------A-TTCCGAAA-----TGTTT-TGAAATTCGTTTGCTTATTCGGGCTCTTGTTTGTGAAACTCTATTCCGTCTAATAT----------TAAAA------C---GA--AAATTCTGTTAAT-CAGTTCAAAGCCTTATATTTACAATt
gi|79825 : aaagcttatTATTGA-TCT-AA-TAGCTA------ATGT-TCATAGACGC----ACACTACGGTCATCC-TATAATTTACAGT--------------TTTATTTTCC-T--TAGCTTAA-TTCTAAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAACTCTATTTCGTCTTACCT---A------AAACA------T---GC--AAATTCTATTAAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79826 : TATTTACTCT-AA-CAGTTA------ATGT-TCATACACGC----ACAT------CGTCC-TCAAATTTACAGT--------------TGTATTCTCC-T--AGGCCTAA-TTCTGAAA-----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTGTTTGTGGAATTTTATTCCGTCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CTGTTCAAAACTTTATATTGACAAT
gi|79827 : ----ACAGTTCGGTCATCC-TCTAATCTACAGT--------------TGTATTCTCC-G--AAGCCTAA-TTCTGAAA-----TGTTT-TGAAATTCGTTTGCTTATTCAGGCTCTTGTGTGTGGAACTCTAT----TCTTTTAT---A------AAAAA------T---GC--AATTTCTATTAAT-CAGTTCAAAGCTTTATATTTACAGT
gi|79828 : ATTGCGTTCATCA-TCTAATCTACAGT--------------GGTATTCTCC-T--AAGCCAAA-TACTAAAC-----TGTTT-CGCCATGCGTTTGCTTTTTCGGGCTCTTGTTGATGGAACACAATTCCATCGTATAT---A------AAAAA------T---CC--AAATTATATTAAT-CAGCTTAAAGCTTTATGTTTA
gi|79829 : TACGACCATCT-CCTAATTTACAAT--------------TATATTCTCC-T--AAGTCAAA-TTTTGAAAACAATCGTT------ATTCGTTTGTTTATTCAGGCATTTGTTTGTGCAAATCTATTTCATCATGTAT---A------AAAAA------C---GC--AAA------TACT-CTGTTCAAAGCTTATTATTTACAAT
gi|79830 : -TCTAATCTACAGT--------------TGTATTCTCC-T--AAGTCTAA-TTCTGAAA-----TGTTT-CGAAATGCGTTT-CTTATTCAGGTTCTTCTTTATGGAACTCTATTACGTCTTATAT----------AAAAA------T---GC--TAATTCTGTTAAT-AAGTTCAAAGCTTTATATTTACGAT
gi|79831 : ACAAT--------------TGTAT---CC-T--AAGCCAAA-TTCTGAAA-----TGTTT-CGTCATTCGTTTACTTATTAAGGCTTTTGTTTGTGGAACTTTATTCCATCATATAT---T------GAAAA------T---GC--AAA---TAT--AT-CAATT----ACTTTATATT
gi|79832 : CAAT--------------TGTAT---CC-T--AAGCCAAA-TTCTGAAA-----TGTTA-CGTCATTCGTTTGCTTATTAAGGCTCTTGTTTGTGGAACTGTATTCCATCATATAT---T------GAAAA------T---GC--AAGGAATATTGAT----TTCAAAaatattt
gi|79833 : TATTCTCC-T--AAGCCTAA-TTCTGAAA-----TGTAT-CGAAATTTATTTGCTTATTCAGGCTCTTCTTTGTGGAACTCTTTTTCGTCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CAGTTCTAAGCTTTATGTTTAC
gi|79834 : TCTCC-T--TAGCCTAA-TTCTGAAA-----TGTTT-TGAAATTCATTGGCTTATTGAGGCTCTGGTTTGTGGAACTCTATTCCGTCTTATAT---A------AAGAA------T---GC--AAGTTCTTTTAAT-CAGTTCAA
gi|79835 : AA-TTCTGAAA-----TGTTT-CCAAAATCGTTTGCTTATTCAGGTTTTTGTTTGAGAAATTTTATTCCATCTTATAT----------ATAAA------T---GC--AAATACAATTGAT-CAGTTCAAAGCTTTACATTT
gi|79836 : -----TGTTT-CGAAATTCGTTTGCTTATTCAGGCTCTTCCTTGTGGAACTCTATTCCATCTTATAT---A------AAAAA------T---GC--AAATTCTATTAAT-CAGTTCAAAGCTTTATATTTACAAT
gi|79837 : TTT-TGGAATTCGTTTGCTTATTCAGGCTCTAGTTTGTGGAACTCTGTACTGTCTTAAAT----------AAAAA------T---GC--AAATTTTATTAAT-TAACTCAAAGCTTTATATTTACAAT
gi|79838 : GAAATCCGTTTGCTTATTCAGGCTCTTGTTTGTGGAACTCTTTTCCATCTTATATAAAA------AAAAA------T---GC--AAATTCTATTAAT-CA
gi|79839 : CTCGTTTGTGGAACTCTGTTCCATCTTATAT---A------AAAAA------AAAAGT--AAATCCTATTAAT-CAGTTCAAAGCTTTATATTTACAATa