lowQualScore : 4 3 33 222 1 11 3 7 2222 4 1 1 8888 1 1 44444444 222 3333 222 555 1
lowQualScore : . . .. ... . .. . . .... . . . .... . . ........ ... .... ... ... .
lowQualScore : 5 8 00 111 2 77 6 0 7777 2 3 7 9999 3 3 88888888 666 3333 777 000 6
consensus : TAGCCACACTGAGGCAAA--CGGAGGCACTTGC---CTCCTGTAGA-A--TTTGTGGA-GNT----TCACA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
Reference ( gi|100384 ) : TAGCCACACCGAGGCAGA--CGGAGGCACTTGC---CTCCTGTAGA-A--TTTGTGGA-GTT----TCACA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100385 : TAGCCACACTGAGGCAAA--CGCAGGCACTTGC---CTCCTGTAGA-A--TTTGTGGA-GTT----TCACA-TGTTT----A-T-TAG--------TG-A-T----TTT---G---TAAAAATAA
gi|100386 : TAGCCACACTGAGGCAAA--CGGAGGCACTTGC---TTCCGGTTGA-A--TTTGTGGA-GTT----TCACA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100383 : TAGTCACACTGAGGCAAA--CGGAGACACTTGC---CTCCTGTAGA-A--TTTGTGGA-GGT----TCATA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAAGAA
gi|100396 : TAGCCACACCGAGGCAGA--TGGAGGCATTTGC---CGCCAGTAGA-A--TATGTGGA-GTT----TC-CA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100393 : TAGCCACACCCAGACAGA--CGGAGGCATTTGC---CTCCTGTAGA-A--TTTGTGGA-GAT----TCACA-TATTT----A-T-TA----------G-T-T----TTT---G---TAAAAATAA
gi|100392 : TAGCCACACTGAGGCAAA--CGGAGGCACTTGCGGCCTCCTGTAGA-A--TTTGTGGA-GTT----TCACA-TGTTT----A-T-AAGTGTTAAACTG-T-T----TTT---G---TGAAAATAA
gi|100394 : TAGCCACATTGAGGCAAA--CGCAGGCACTTGC---CTCTTGTATA-A--TTTGTGGA-GCT----TAACA-TGTTT----A-T-TAG--------CGTT-T----TTT---G---TAAAAATAA
gi|100395 : TAGCCTTAATGAGACAAA--CGGAGGCACTTGC---CTCTGGTAGA-A--TTTGTGGA-ATT----TCACT-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100388 : TAGCCACACTGAGACAAA--TGGAGGCACTTGC---CTCCTGTTGA-A--TTTGTGGA-GGT----TCACT-TGTTT----A-T-TAG--------TA---T----TTT---G---TAAAAAGAA
gi|100400 : TAGCCACACCGCGGCAGA--CGGAGGCACTTGC---CTCCTGTAGATT--TTTTTTGA-GAT----TCACA-TGTAT----A-T-TAG--------TG-G-T----TTT---G---TAAAAA
gi|100391 : TAGTCACACTAAGGCAAA--CGGAGTCACTGGC---CTCCTGCAGA-A--TTTGTGGT-GGT----TCACC-TGTTT----A-T-TAG--------TG-G-T----TTT---G---TAAAAAGAA
gi|100387 : TAGCCACACTGAGGCAAA--CGGAGGCACTTCC---CTCCTGTAGA-A--TTTGTAGATGTT----CCA-A-TTTTTA---A-T-TAA--------TG-T-T----TTT---G---TAAAGAAAA
gi|100390 : TAGCCACACTGAGGCAAA--CGGAGTCACTTGC---CTCCTGTAGA-G--TTTGCGGA-GGT----TCAAA-TGTTT----A-T-TAG--------T
gi|100389 : TAGCCACACTGAGGCAAA--CAGAGGCACTTGC---CTCGTGTAGA-A--TTTGTGGA-GAT----TCAAA-TTTTT----A-GATAG--------TG-T-TAAACTTT---A---TAAAAAAAA
gi|100399 : TAGTCACACTGAGGCAAA--CGGAGACTATTGC---CTCCTGTAGA-A--TTTTTAGA-GGT----TCACA-TTGTT----A-T-TAT--------TG-T-T----TTT---G---TAACAA
gi|100401 : TAGGCACACTGAGGCAAA--CGGAGGCACTTGC---CTCCTGTATA-A--TTTGTGGA-GGT----TCACA-TAT------------------------T-T----TTT---G---TATAAAGAAaa
gi|100402 : TATCCACACTGAGGCAAA--CGGAGGCACTTGC---CTCCTGTAGA-A------TGG----T----TCACA-TGTTT----A-T-TAG--------TG-T-
gi|100397 : TAGCCACACTGCGGAAAA--CAGAGGCACTTGC---CTCCTGTAGA-A--TGTGTGGT-GAT----TCAAA-TGTTTGA--A-T-TGG--------TA-T-T----TTT---GTTTTAAAAA
gi|100398 : TAGCCACACTGAGACAAA--AGGGGGCATTTGC---CTCCTGTAGA-A--TTTGTAGATGTT----CAAAA-TTTTT----A-T-TAG--------CA-T-T----TTTTAAA---TAAAAA
gi|100404 : TAGCCACACTGAGGCAAA--TGGAG-CACTTGT---CTCCAGTAGA-A--TTTGTGGA-GGT----TCACA-TATTT----A-G-TA
gi|100403 : TAGCCGCACTGAGGCAAA--CAGAGGTACTTGC---CTCTTGTAGA-A--TTTGTGGA-GAT----TCG-A-TTTTTTA--A-T-TAA--------TA-G-T----TAA---G---TAAAAaaaaaa
gi|100408 : TAGCAACACTGAGGCAAA--CGGAGGCACTTAT---TTCCT-TA---------GTGGA-GGT----TCACA-TATTT----T-T-TAG--------TG-G-T----TCT---G---T-AAAATAAcaaa
gi|100405 : TAGCCATGCTGAGGCAAG--CGGAGGCACTTGC---CTCTTGTAGA-A--TTTGTAG-------------A-TGTTC----------G--------AG-T-T----TTT---G---TAAAAA
gi|100407 : TAGCCACACTGAGGCAGA--TGGAGGCACTTGC---CTCTGGTAAA-AATTTTGAGG--GTT----CGAAA-T-TTT----ATT-TAG--------TA-A-T----TGT---G---TAAAAa
gi|100406 : TAGCCACGCT-AGTCAAA--CGGAGGCACTTGC---CTCCTGTAAA-A--TTTGTGGT-TGT----TCGAT-TTTTT----A-T-TAG--------TA-T-caaa
gi|100409 : TAGCCACTCTGGGAAAAAAACGGAGGCATTTGC---CTCCTGTAGA-C--TTTGTAGA-TGT----TCGAA-TTTTTA---A-T-TAG--------TG---T----TTT---G----AAAAA
gi|100410 : TGGCTACACTGAGGCAAA--CGGGAGCACTAGC---CTCCTGTATC-A--TTTGTGGAGGTTTGAATTACT-TTTTA----A-T-TAG--------TG-TAT----TTT---T---TA
gi|100411 : TAGTCGCACTTAAGCAAA--CGGAG---CTTGC---CTCTTGTGGA-A--TTTGTGGA-GAT----TCGAA-TGTT-------T-TAA--------TG-
gi|100412 : TAGCCACACTGAGG-AGAG-CGGAGGCACTTGT---CTCCTGTAAA-----CTGTGGA-aatattaaaaaaaa
gi|100413 : TAGCCACACTGAGGC----------------------TCCTGTAGA-A--TTTGTGGA-GAT----TCG-A-TTTTTTTTAA-T-TAA--------TA-T-T----TTT---GAA-CAAAAA
gi|100415 : AGCCGCACTGAGGCAAA--CGGAGGCACTTGC---CTCATGTAAA-A--TATGTGGA-ATT----T-----TGATA----A-T-TA------------T-T----TTT---G---TGAAGAa
gi|100414 : AGGCACACTGAGTCAAA--CGGAGGCACTTGC---CTCCTGTAGA-A--TTTGTGAA-GAT----TTAaga
gi|100416 : GCAATTGC---CTCCTGTAGA-A--TTTGTAGA-TTT----TCAAATTTTTT----A-G-TAG--------TG-T-T----TTT---
Alignments
lowQualScore : 11 222 1 1 33333 333 1 2 8888 1 1 44444444 222 3333 222 444 0
lowQualScore : .. ... . . ..... ... . . .... . . ........ ... .... ... ... .
lowQualScore : 77 111 2 0 00000 111 2 2 6666 2 2 77777777 222 1111 666 888 9
consensus : TAGCCACACTGAGGCAAA--CGGAGGCACTTGC---CTCCTGTAGA-ATTTGTGGAGGT-----TC-ACA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
Reference ( family-598 ) : TAGCCACACTGAGGCAAA--CGGAGGCACTTGC---CTCCTGTAGA-ATTTGTGGAGNT-----TC-ACA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100383 : TAGTCACACTGAGGCAAA--CGGAGACACTTGC---CTCCTGTAGA-ATTTGTGGAGGT-----TC-ATA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAAGAA
gi|100384 : TAGCCACACCGAGGCAGA--CGGAGGCACTTGC---CTCCTGTAGA-ATTTGTGGAGTT-----TC-ACA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100385 : TAGCCACACTGAGGCAAA--CGCAGGCACTTGC---CTCCTGTAGA-ATTTGTGGAGTT-----TC-ACA-TGTTT----A-T-TAG--------TG-A-T----TTT---G---TAAAAATAA
gi|100386 : TAGCCACACTGAGGCAAA--CGGAGGCACTTGC---TTCCGGTTGA-ATTTGTGGAGTT-----TC-ACA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100387 : TAGCCACACTGAGGCAAA--CGGAGGCACTTCC---CTCCTGTAGA-ATTTGTAGATGT-----TC-CAA-TTTTTA---A-T-TAA--------TG-T-T----TTT---G---TAAAGAAAA
gi|100388 : TAGCCACACTGAGACAAA--TGGAGGCACTTGC---CTCCTGTTGA-ATTTGTGGAGGT-----TC-ACT-TGTTT----A-T-TAG--------TA---T----TTT---G---TAAAAAGAA
gi|100389 : TAGCCACACTGAGGCAAA--CAGAGGCACTTGC---CTCGTGTAGA-ATTTGTGGAGAT-----TC-AAA-TTTTT----A-GATAG--------TG-T-TAAACTTT---A---TAAAAAAAA
gi|100390 : TAGCCACACTGAGGCAAA--CGGAGTCACTTGC---CTCCTGTAGA-GTTTGCGGAGGT-----TC-AAA-TGTTT----A-T-TAG--------T
gi|100391 : TAGTCACACTAAGGCAAA--CGGAGTCACTGGC---CTCCTGCAGA-ATTTGTGGTGGT-----TC-ACC-TGTTT----A-T-TAG--------TG-G-T----TTT---G---TAAAAAGAA
gi|100392 : TAGCCACACTGAGGCAAA--CGGAGGCACTTGCGGCCTCCTGTAGA-ATTTGTGGAGTT-----TC-ACA-TGTTT----A-T-AAGTGTTAAACTG-T-T----TTT---G---TGAAAATAA
gi|100393 : TAGCCACACCCAGACAGA--CGGAGGCATTTGC---CTCCTGTAGA-ATTTGTGGAGAT-----TC-ACA-TATTT----A-T-TA----------G-T-T----TTT---G---TAAAAATAA
gi|100394 : TAGCCACATTGAGGCAAA--CGCAGGCACTTGC---CTCTTGTATA-ATTTGTGGAGCT-----TA-ACA-TGTTT----A-T-TAG--------CGTT-T----TTT---G---TAAAAATAA
gi|100395 : TAGCCTTAATGAGACAAA--CGGAGGCACTTGC---CTCTGGTAGA-ATTTGTGGAATT-----TC-ACT-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100396 : TAGCCACACCGAGGCAGA--TGGAGGCATTTGC---CGCCAGTAGA-ATATGTGGAGTT-----TC--CA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100397 : TAGCCACACTGCGGAAAA--CAGAGGCACTTGC---CTCCTGTAGA-ATGTGTGGTGAT-----TC-AAA-TGTTTGA--A-T-TGG--------TA-T-T----TTT---GTTTTAAAAA
gi|100398 : TAGCCACACTGAGACAAA--AGGGGGCATTTGC---CTCCTGTAGA-ATTTGTAGATGT-----TCAAAA-TTTTT----A-T-TAG--------CA-T-T----TTTTAAA---TAAAAA
gi|100399 : TAGTCACACTGAGGCAAA--CGGAGACTATTGC---CTCCTGTAGA-ATTTTTAGAGGT-----TC-ACA-TTGTT----A-T-TAT--------TG-T-T----TTT---G---TAACAA
gi|100400 : TAGCCACACCGCGGCAGA--CGGAGGCACTTGC---CTCCTGTAGATTTTTTTTGAGAT-----TC-ACA-TGTAT----A-T-TAG--------TG-G-T----TTT---G---TAAAAAaa
gi|100401 : TAGGCACACTGAGGCAAA--CGGAGGCACTTGC---CTCCTGTATA-ATTTGTGGAGGT-----TC-ACA-TAT------------------------T-T----TTT---G---TATAAAGAA
gi|100402 : TATCCACACTGAGGCAAA--CGGAGGCACTTGC---CTCCTGTAGA-AT-------GGT-----TC-ACA-TGTTT----A-T-TAG--------TG-T-
gi|100403 : TAGCCGCACTGAGGCAAA--CAGAGGTACTTGC---CTCTTGTAGA-ATTTGTGGAGAT-----TC-G-A-TTTTTTA--A-T-TAA--------TA-G-T----TAA---G---TAAAA
gi|100404 : TAGCCACACTGAGGCAAA--TGGAG-CACTTGT---CTCCAGTAGA-ATTTGTGGAGGT-----TC-ACA-TATTT----A-G-TAcaaa
gi|100405 : TAGCCATGCTGAGGCAAG--CGGAGGCACTTGC---CTCTTGTAGA-ATTTGTAGATGT-----TC--------------------G--------AG-T-T----TTT---G---TAAAAAaaaaaa
gi|100406 : TAGCCACGCT-AGTCAAA--CGGAGGCACTTGC---CTCCTGTAAA-ATTTGTGGTTGT-----TC-GAT-TTTTT----A-T-TAG--------TA-T-a
gi|100407 : TAGCCACACTGAGGCAGA--TGGAGGCACTTGC---CTCTGGTAAA-AATTTTGAGGGT-----TCGAAA-T-TTT----ATT-TAG--------TA-A-T----TGT---G---TAAAA
gi|100408 : TAGCAACACTGAGGCAAA--CGGAGGCACTTAT---TTCCT-TA-------GTGGAGGT-----TC-ACA-TATTT----T-T-TAG--------TG-G-T----TCT---G---T-AAAATAAcaaa
gi|100409 : TAGCCACTCTGGGAAAAAAACGGAGGCATTTGC---CTCCTGTAGA-CTTTGTAGATGT-----TC-GAA-TTTTTA---A-T-TAG--------TG---T----TTT---G----AAAAA
gi|100410 : TGGCTACACTGAGGCAAA--CGGGAGCACTAGC---CTCCTGTATC-ATTTGTGGAGGTTTGAATT-ACT-TTTTA----A-T-TAG--------TG-TAT----TTT---T---TA
gi|100411 : TAGTCGCACTTAAGCAAA--CGGAG---CTTGC---CTCTTGTGGA-ATTTGTGGAGAT-----TC-GAA-TGTT-------T-TAA--------TG-
gi|100412 : TAGCCACACTGAGGAGAG--CGGAGGCACTTGT---CTCCTGTAAA---CTGTGGAaatattaaaaaaaa
gi|100413 : TAGCCACACTGAGGC----------------------TCCTGTAGA-ATTTGTGGAGAT-----TC-G-A-TTTTTTTTAA-T-TAA--------TA-T-T----TTT---GAA-CAAAAA
gi|100414 : AGGCACACTGAGTCAAA--CGGAGGCACTTGC---CTCCTGTAGA-ATTTGTGAAGAT-----TT-Aa
gi|100415 : AGCCGCACTGAGGCAAA--CGGAGGCACTTGC---CTCATGTAAA-ATATGTGGAATT-----T------TGATA----A-T-TA------------T-T----TTT---G---TGAAGA
gi|100416 : GCAATTGC---CTCCTGTAGA-ATTTGTAGATTT-----TC-AAATTTTTT----A-G-TAG--------TG-T-T----TTT---aga
Alignments
lowQualScore : 11 222 1 0 33333 333 1 2 8888 1 1 44444444 222 3333 222 444 0
lowQualScore : .. ... . . ..... ... . . .... . . ........ ... .... ... ... .
lowQualScore : 77 111 2 7 00000 111 2 2 6666 2 2 77777777 222 1111 666 888 9
consensus : TAGCCACACTGAGGCAAA--CGGAGGCACTTGC---CTCCTGTAGA-ATTTGTGGAGGT-----TC-ACA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
Reference ( family-598 ) : TAGCCACACTGAGGCAAA--CGGAGGCACTTGC---CTCCTGTAGA-ATTTGTGGAGGT-----TC-ACA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100383 : TAGTCACACTGAGGCAAA--CGGAGACACTTGC---CTCCTGTAGA-ATTTGTGGAGGT-----TC-ATA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAAGAA
gi|100384 : TAGCCACACCGAGGCAGA--CGGAGGCACTTGC---CTCCTGTAGA-ATTTGTGGAGTT-----TC-ACA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100385 : TAGCCACACTGAGGCAAA--CGCAGGCACTTGC---CTCCTGTAGA-ATTTGTGGAGTT-----TC-ACA-TGTTT----A-T-TAG--------TG-A-T----TTT---G---TAAAAATAA
gi|100386 : TAGCCACACTGAGGCAAA--CGGAGGCACTTGC---TTCCGGTTGA-ATTTGTGGAGTT-----TC-ACA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100387 : TAGCCACACTGAGGCAAA--CGGAGGCACTTCC---CTCCTGTAGA-ATTTGTAGATGT-----TC-CAA-TTTTTA---A-T-TAA--------TG-T-T----TTT---G---TAAAGAAAA
gi|100388 : TAGCCACACTGAGACAAA--TGGAGGCACTTGC---CTCCTGTTGA-ATTTGTGGAGGT-----TC-ACT-TGTTT----A-T-TAG--------TA---T----TTT---G---TAAAAAGAA
gi|100389 : TAGCCACACTGAGGCAAA--CAGAGGCACTTGC---CTCGTGTAGA-ATTTGTGGAGAT-----TC-AAA-TTTTT----A-GATAG--------TG-T-TAAACTTT---A---TAAAAAAAA
gi|100390 : TAGCCACACTGAGGCAAA--CGGAGTCACTTGC---CTCCTGTAGA-GTTTGCGGAGGT-----TC-AAA-TGTTT----A-T-TAG--------T
gi|100391 : TAGTCACACTAAGGCAAA--CGGAGTCACTGGC---CTCCTGCAGA-ATTTGTGGTGGT-----TC-ACC-TGTTT----A-T-TAG--------TG-G-T----TTT---G---TAAAAAGAA
gi|100392 : TAGCCACACTGAGGCAAA--CGGAGGCACTTGCGGCCTCCTGTAGA-ATTTGTGGAGTT-----TC-ACA-TGTTT----A-T-AAGTGTTAAACTG-T-T----TTT---G---TGAAAATAA
gi|100393 : TAGCCACACCCAGACAGA--CGGAGGCATTTGC---CTCCTGTAGA-ATTTGTGGAGAT-----TC-ACA-TATTT----A-T-TA----------G-T-T----TTT---G---TAAAAATAA
gi|100394 : TAGCCACATTGAGGCAAA--CGCAGGCACTTGC---CTCTTGTATA-ATTTGTGGAGCT-----TA-ACA-TGTTT----A-T-TAG--------CGTT-T----TTT---G---TAAAAATAA
gi|100395 : TAGCCTTAATGAGACAAA--CGGAGGCACTTGC---CTCTGGTAGA-ATTTGTGGAATT-----TC-ACT-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100396 : TAGCCACACCGAGGCAGA--TGGAGGCATTTGC---CGCCAGTAGA-ATATGTGGAGTT-----TC--CA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100397 : TAGCCACACTGCGGAAAA--CAGAGGCACTTGC---CTCCTGTAGA-ATGTGTGGTGAT-----TC-AAA-TGTTTGA--A-T-TGG--------TA-T-T----TTT---GTTTTAAAAA
gi|100398 : TAGCCACACTGAGACAAA--AGGGGGCATTTGC---CTCCTGTAGA-ATTTGTAGATGT-----TCAAAA-TTTTT----A-T-TAG--------CA-T-T----TTTTAAA---TAAAAA
gi|100399 : TAGTCACACTGAGGCAAA--CGGAGACTATTGC---CTCCTGTAGA-ATTTTTAGAGGT-----TC-ACA-TTGTT----A-T-TAT--------TG-T-T----TTT---G---TAACAA
gi|100400 : TAGCCACACCGCGGCAGA--CGGAGGCACTTGC---CTCCTGTAGATTTTTTTTGAGAT-----TC-ACA-TGTAT----A-T-TAG--------TG-G-T----TTT---G---TAAAAAaa
gi|100401 : TAGGCACACTGAGGCAAA--CGGAGGCACTTGC---CTCCTGTATA-ATTTGTGGAGGT-----TC-ACA-TAT------------------------T-T----TTT---G---TATAAAGAA
gi|100402 : TATCCACACTGAGGCAAA--CGGAGGCACTTGC---CTCCTGTAGA-AT-------GGT-----TC-ACA-TGTTT----A-T-TAG--------TG-T-
gi|100403 : TAGCCGCACTGAGGCAAA--CAGAGGTACTTGC---CTCTTGTAGA-ATTTGTGGAGAT-----TC-G-A-TTTTTTA--A-T-TAA--------TA-G-T----TAA---G---TAAAA
gi|100404 : TAGCCACACTGAGGCAAA--TGGAG-CACTTGT---CTCCAGTAGA-ATTTGTGGAGGT-----TC-ACA-TATTT----A-G-TAcaaa
gi|100405 : TAGCCATGCTGAGGCAAG--CGGAGGCACTTGC---CTCTTGTAGA-ATTTGTAGATGT-----TC--------------------G--------AG-T-T----TTT---G---TAAAAAaaaaaa
gi|100406 : TAGCCACGCT-AGTCAAA--CGGAGGCACTTGC---CTCCTGTAAA-ATTTGTGGTTGT-----TC-GAT-TTTTT----A-T-TAG--------TA-T-a
gi|100407 : TAGCCACACTGAGGCAGA--TGGAGGCACTTGC---CTCTGGTAAA-AATTTTGAGGGT-----TCGAAA-T-TTT----ATT-TAG--------TA-A-T----TGT---G---TAAAA
gi|100408 : TAGCAACACTGAGGCAAA--CGGAGGCACTTAT---TTCCT-TA-------GTGGAGGT-----TC-ACA-TATTT----T-T-TAG--------TG-G-T----TCT---G---T-AAAATAAcaaa
gi|100409 : TAGCCACTCTGGGAAAAAAACGGAGGCATTTGC---CTCCTGTAGA-CTTTGTAGATGT-----TC-GAA-TTTTTA---A-T-TAG--------TG---T----TTT---G----AAAAA
gi|100410 : TGGCTACACTGAGGCAAA--CGGGAGCACTAGC---CTCCTGTATC-ATTTGTGGAGGTTTGAATT-ACT-TTTTA----A-T-TAG--------TG-TAT----TTT---T---TA
gi|100411 : TAGTCGCACTTAAGCAAA--CGGAG---CTTGC---CTCTTGTGGA-ATTTGTGGAGAT-----TC-GAA-TGTT-------T-TAA--------TG-
gi|100412 : TAGCCACACTGAGGAGAG--CGGAGGCACTTGT---CTCCTGTAAA---CTGTGGAaatattaaaaaaaa
gi|100413 : TAGCCACACTGAGGC----------------------TCCTGTAGA-ATTTGTGGAGAT-----TC-G-A-TTTTTTTTAA-T-TAA--------TA-T-T----TTT---GAA-CAAAAA
gi|100414 : AGGCACACTGAGTCAAA--CGGAGGCACTTGC---CTCCTGTAGA-ATTTGTGAAGAT-----TT-Aa
gi|100415 : AGCCGCACTGAGGCAAA--CGGAGGCACTTGC---CTCATGTAAA-ATATGTGGAATT-----T------TGATA----A-T-TA------------T-T----TTT---G---TGAAGA
gi|100416 : GCAATTGC---CTCCTGTAGA-ATTTGTAGATTT-----TC-AAATTTTTT----A-G-TAG--------TG-T-T----TTT---aga
blockSeqs : AA GGC T TTGAA AAA T G TTTA T A TGTTAAAC TT AAAC TAA TTT
blockSeqs : . . . . GAA . G GA . . . TA . . AA
blockSeqs : . . . . AC . G TA . . . T . . .
blockSeqs : . . . . AC . T A . . . A . . .
blockSeqs : . . . . AC . G A . . . T . . .
blockSeqs : . . . . CA . T . . . . T . . .
blockSeqs : . . . . AC . G . . . . T . . .
blockSeqs : . . . . AA . G . . . . G . . .
blockSeqs : . . . . AA . G . . . . T . . .
blockSeqs : . . . . AC . A . . . . T . . .
blockSeqs : . . . . AC . G . . . . T . . .
blockSeqs : . . . . AC . G . . . . T . . .
blockSeqs : . . . . AC . G . . . . T . . .
blockSeqs : . . . . AC . G . . . . T . . .
blockSeqs : . . . . AA . T . . . . T . . .
blockSeqs : . . . . AC . T . . . . G . . .
blockSeqs : . . . . AC . G . . . . T . . .
blockSeqs : . . . . AC . A . . . . T . . .
blockSeqs : . . . . AC . G . . . . G . . .
blockSeqs : . . . . AC . T . . . . T . . .
blockSeqs : . . . . GA . A . . . . T . . .
blockSeqs : . . . . AC . T . . . . A . . .
blockSeqs : . . . . GA . A . . . . G . . .
blockSeqs : . . . . AC . T . . . . T . . .
blockSeqs : . . . . GA . T . . . . T . . .
blockSeqs : . . . . AA . G . . . . T . .
blockSeqs : . . . . C . T . . . . .
blockSeqs : . . . . G . G . . . . .
blockSeqs : . . . . G . T . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . .
blockSeqs : . .
blockSeqCons :
originalCons : TAGCCACACTGAGGCAAA--CGGAGGCACTTGC---CTCCTGTAGA-ATTTGTGGAGGT-----TC-ACA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
finalCons : TAGCCACACTGAGGCAAA--CGGAGGCACTTGC---CTCCTGTAGA-ATTTGTGGAGGT-----TC-ACA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
Alignments
lowQualScore : 11 222 1 0 33333 333 1 2 8888 1 1 44444444 222 3333 222 444 0
lowQualScore : .. ... . . ..... ... . . .... . . ........ ... .... ... ... .
lowQualScore : 77 111 2 7 00000 111 2 2 6666 2 2 77777777 222 1111 666 888 9
consensus : TAGCCACACTGAGGCAAA--CGGAGGCACTTGC---CTCCTGTAGA-ATTTGTGGAGGT-----TC-ACA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
Reference ( family-598 ) : TAGCCACACTGAGGCAAA--CGGAGGCACTTGC---CTCCTGTAGA-ATTTGTGGAGGT-----TC-ACA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100383 : TAGTCACACTGAGGCAAA--CGGAGACACTTGC---CTCCTGTAGA-ATTTGTGGAGGT-----TC-ATA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAAGAA
gi|100384 : TAGCCACACCGAGGCAGA--CGGAGGCACTTGC---CTCCTGTAGA-ATTTGTGGAGTT-----TC-ACA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100385 : TAGCCACACTGAGGCAAA--CGCAGGCACTTGC---CTCCTGTAGA-ATTTGTGGAGTT-----TC-ACA-TGTTT----A-T-TAG--------TG-A-T----TTT---G---TAAAAATAA
gi|100386 : TAGCCACACTGAGGCAAA--CGGAGGCACTTGC---TTCCGGTTGA-ATTTGTGGAGTT-----TC-ACA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100387 : TAGCCACACTGAGGCAAA--CGGAGGCACTTCC---CTCCTGTAGA-ATTTGTAGATGT-----TC-CAA-TTTTTA---A-T-TAA--------TG-T-T----TTT---G---TAAAGAAAA
gi|100388 : TAGCCACACTGAGACAAA--TGGAGGCACTTGC---CTCCTGTTGA-ATTTGTGGAGGT-----TC-ACT-TGTTT----A-T-TAG--------TA---T----TTT---G---TAAAAAGAA
gi|100389 : TAGCCACACTGAGGCAAA--CAGAGGCACTTGC---CTCGTGTAGA-ATTTGTGGAGAT-----TC-AAA-TTTTT----A-GATAG--------TG-T-TAAACTTT---A---TAAAAAAAA
gi|100390 : TAGCCACACTGAGGCAAA--CGGAGTCACTTGC---CTCCTGTAGA-GTTTGCGGAGGT-----TC-AAA-TGTTT----A-T-TAG--------T
gi|100391 : TAGTCACACTAAGGCAAA--CGGAGTCACTGGC---CTCCTGCAGA-ATTTGTGGTGGT-----TC-ACC-TGTTT----A-T-TAG--------TG-G-T----TTT---G---TAAAAAGAA
gi|100392 : TAGCCACACTGAGGCAAA--CGGAGGCACTTGCGGCCTCCTGTAGA-ATTTGTGGAGTT-----TC-ACA-TGTTT----A-T-AAGTGTTAAACTG-T-T----TTT---G---TGAAAATAA
gi|100393 : TAGCCACACCCAGACAGA--CGGAGGCATTTGC---CTCCTGTAGA-ATTTGTGGAGAT-----TC-ACA-TATTT----A-T-TA----------G-T-T----TTT---G---TAAAAATAA
gi|100394 : TAGCCACATTGAGGCAAA--CGCAGGCACTTGC---CTCTTGTATA-ATTTGTGGAGCT-----TA-ACA-TGTTT----A-T-TAG--------CGTT-T----TTT---G---TAAAAATAA
gi|100395 : TAGCCTTAATGAGACAAA--CGGAGGCACTTGC---CTCTGGTAGA-ATTTGTGGAATT-----TC-ACT-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100396 : TAGCCACACCGAGGCAGA--TGGAGGCATTTGC---CGCCAGTAGA-ATATGTGGAGTT-----TC--CA-TGTTT----A-T-TAG--------TG-T-T----TTT---G---TAAAAATAA
gi|100397 : TAGCCACACTGCGGAAAA--CAGAGGCACTTGC---CTCCTGTAGA-ATGTGTGGTGAT-----TC-AAA-TGTTTGA--A-T-TGG--------TA-T-T----TTT---GTTTTAAAAA
gi|100398 : TAGCCACACTGAGACAAA--AGGGGGCATTTGC---CTCCTGTAGA-ATTTGTAGATGT-----TCAAAA-TTTTT----A-T-TAG--------CA-T-T----TTTTAAA---TAAAAA
gi|100399 : TAGTCACACTGAGGCAAA--CGGAGACTATTGC---CTCCTGTAGA-ATTTTTAGAGGT-----TC-ACA-TTGTT----A-T-TAT--------TG-T-T----TTT---G---TAACAA
gi|100400 : TAGCCACACCGCGGCAGA--CGGAGGCACTTGC---CTCCTGTAGATTTTTTTTGAGAT-----TC-ACA-TGTAT----A-T-TAG--------TG-G-T----TTT---G---TAAAAAaa
gi|100401 : TAGGCACACTGAGGCAAA--CGGAGGCACTTGC---CTCCTGTATA-ATTTGTGGAGGT-----TC-ACA-TAT------------------------T-T----TTT---G---TATAAAGAA
gi|100402 : TATCCACACTGAGGCAAA--CGGAGGCACTTGC---CTCCTGTAGA-AT-------GGT-----TC-ACA-TGTTT----A-T-TAG--------TG-T-
gi|100403 : TAGCCGCACTGAGGCAAA--CAGAGGTACTTGC---CTCTTGTAGA-ATTTGTGGAGAT-----TC-G-A-TTTTTTA--A-T-TAA--------TA-G-T----TAA---G---TAAAA
gi|100404 : TAGCCACACTGAGGCAAA--TGGAG-CACTTGT---CTCCAGTAGA-ATTTGTGGAGGT-----TC-ACA-TATTT----A-G-TAcaaa
gi|100405 : TAGCCATGCTGAGGCAAG--CGGAGGCACTTGC---CTCTTGTAGA-ATTTGTAGATGT-----TC--------------------G--------AG-T-T----TTT---G---TAAAAAaaaaaa
gi|100406 : TAGCCACGCT-AGTCAAA--CGGAGGCACTTGC---CTCCTGTAAA-ATTTGTGGTTGT-----TC-GAT-TTTTT----A-T-TAG--------TA-T-a
gi|100407 : TAGCCACACTGAGGCAGA--TGGAGGCACTTGC---CTCTGGTAAA-AATTTTGAGGGT-----TCGAAA-T-TTT----ATT-TAG--------TA-A-T----TGT---G---TAAAA
gi|100408 : TAGCAACACTGAGGCAAA--CGGAGGCACTTAT---TTCCT-TA-------GTGGAGGT-----TC-ACA-TATTT----T-T-TAG--------TG-G-T----TCT---G---T-AAAATAAcaaa
gi|100409 : TAGCCACTCTGGGAAAAAAACGGAGGCATTTGC---CTCCTGTAGA-CTTTGTAGATGT-----TC-GAA-TTTTTA---A-T-TAG--------TG---T----TTT---G----AAAAA
gi|100410 : TGGCTACACTGAGGCAAA--CGGGAGCACTAGC---CTCCTGTATC-ATTTGTGGAGGTTTGAATT-ACT-TTTTA----A-T-TAG--------TG-TAT----TTT---T---TA
gi|100411 : TAGTCGCACTTAAGCAAA--CGGAG---CTTGC---CTCTTGTGGA-ATTTGTGGAGAT-----TC-GAA-TGTT-------T-TAA--------TG-
gi|100412 : TAGCCACACTGAGGAGAG--CGGAGGCACTTGT---CTCCTGTAAA---CTGTGGAaatattaaaaaaaa
gi|100413 : TAGCCACACTGAGGC----------------------TCCTGTAGA-ATTTGTGGAGAT-----TC-G-A-TTTTTTTTAA-T-TAA--------TA-T-T----TTT---GAA-CAAAAA
gi|100414 : AGGCACACTGAGTCAAA--CGGAGGCACTTGC---CTCCTGTAGA-ATTTGTGAAGAT-----TT-Aa
gi|100415 : AGCCGCACTGAGGCAAA--CGGAGGCACTTGC---CTCATGTAAA-ATATGTGGAATT-----T------TGATA----A-T-TA------------T-T----TTT---G---TGAAGA
gi|100416 : GCAATTGC---CTCCTGTAGA-ATTTGTAGATTT-----TC-AAATTTTTT----A-G-TAG--------TG-T-T----TTT---aga