lowQualScore : 000 0 0 0 7 0 000 0 0 0 00
lowQualScore : ... . . . . . ... . . . ..
lowQualScore : 777 4 4 4 8 8 777 8 4 5 66
consensus : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
Reference ( gi|80112 ) : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80134 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80133 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80176 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-GAG---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80201 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGGTTGACAGTC-AG--ACGC
gi|80113 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GTCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80148 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---A-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ATGC
gi|80210 : ATAATGAGACACAATGTCGTATATCAATAATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGCt
gi|80191 : ATAATGAGACACGATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AA--ACGCgtacca
gi|80137 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGA-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--GCGC
gi|80186 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AA--ATGC
gi|80170 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGCg
gi|80166 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80165 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80164 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80162 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80156 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-GAATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80175 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80174 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GCCGGG-CAG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80171 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---GAG-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80109 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAAACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTA-AG--ACGC
gi|80202 : ATAATGAGACGCAATGTCGTATATCAGTCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAATC-AG--ACACt
gi|80114 : ATAATGAGACACAATGTCATATATCAATCACCACGGAGACT---GT-T-GCCGGA-C-G-G---G-G-ATTCAAACTCACGACCCCTGAATTGATAGTC-AG--ACGC
gi|80117 : ATAATGAGACACAATGTCATATATCAATCATCACAGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCAAACTTACGACCCCTGGATTGATAGTC-AG--ACAC
gi|80216 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGC-G-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80203 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTG-AG--ACGC
gi|80103 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTA-AC--ACGC
gi|80231 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCAAACTCACGACCCCTGTATTGATAGTC-AG--ACGC
gi|80146 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGAG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTA-AG--ACG
gi|80127 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCAGG-C-GAG---G-G-ATTCAAACTCACGACCCCAGGATTGATAGTC-AG--ACGC
gi|80187 : ATAATGAGACACAATGTCGTATATCAATCATCACAGCGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTT-AG--ACGCgtaactgactgagctaatcgggcctggcattgaattcagaaacaatgtttat
gi|80126 : ATAATGAGACACACTGTCGTATATCAATCATCACAAAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80150 : ACAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCTGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AA--ACG
gi|80130 : ATAATGAGACACAATGTCATATATCAATCATCACAGAGACT---GT-T-GCCGGG-CAG-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ATGCtt
gi|80110 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCAAACTCATGATCCCTGGATTGATAGTC-AG--ACGC
gi|80246 : ATAATGAGACACAATGTCGTATATCAATCATCAC--AGACT---GT-T-GCCGTG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80224 : ATAATGAGACACAATGTCATATATCAATCATCATGGAGACT---GT-T-GCCAGG-C-G-G---G-G-ATTCGAACTCACGACCCTTGGATTGATAGTC-AG--ACGC
gi|80205 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGT
gi|80196 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GACGGG-C-G-G---G-G-ATTCAAACTCATGATCCCTGGACTGATAGTC-AG--ACAC
gi|80152 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACAACCCGTGGATTGATAGTC-AG--ATGC
gi|80226 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCAAACTCACGA-CCCTGGATTGATAGTC-AG--ATGC
gi|80212 : ATAATGAGACACAATGTCATATATCAATCATTATGAAGACT---GT-T-GCCGGG-C-G-G---A-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80145 : ATAATGAGACACAATGTCATATATCAATCATCACAGAGACT---GT-T-GCCGGT-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80243 : ATAATGAGACACAATGTCGTATATCAAACATCACAAAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCAAACTCACGACCCCTAGATTGATAGTC-AG--ACGC
gi|80190 : ATAATGAGAGACAATGTCGTATATCAGTCATCACAGAGACT---GT-T-GCCGAG-T-G-G---G-G-ATTCAAACTCACGACCCTTGGATTGATAGTC-AG--ACGC
gi|80128 : ATAATGAGACACAATGTCGTATATCAATCATCACGAGGACT---GT-T-GCCGGG-TGG-G---G-G-ATTCAAACTCATGACCCCTGGATTGATAGTC-AG--ATGC
gi|80105 : ACAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCAGG-C-A-G---G-G-ATTCAAACTCATAACCCATGGATTGATAGTC-AG--ACGC
gi|80104 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GACGGA-C-G-A---G-G-ATTCAAACTCACGACCCCAGGATTGATAGTC-AG--ACG
gi|80172 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GGCAGG-TGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80161 : ATAATGAGACACAATGTCGTATATCAATCATCGCAAAAACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGA-CCCTGGATTGATAGTC-AG--ACGCt
gi|80136 : ATAATGAGACACAATGTCGTATATCAATAATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCAAGGATTGATAGTC-AG--ACGC
gi|80099 : ATAATGAGACATAATGTTGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-T-G-G---G-G-ATTCGAACTTATGACCCCTGGATTGATAGTA-AG--ACGC
gi|80207 : ATAATGATACACAATGTCGTATATCAATCATCACGGAGACG---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACAAACCCTGGATTGATAGTC-AT--ACGC
gi|80120 : ATAATGAGAAACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GGCGGGTT-G-G---G-G-ATTCAAACTCACGACCCCAGGATTGATAGTC-AG--ACGC
gi|80131 : ATAATGAGACATAATGTCGTATATCAATCATCACAGAGACT---GT-T-GCCGGG-T-G-G---G-G-ATTCGAACTCAAGACCCTTGGATTAATAGTC-AG--ATGC
gi|80229 : ATAATGAGACATTATGTCGTATATCAATCATCACGGAGACT---GT-T-GCTGGG-C-G-G---G-G-ATTCGAACTCACGACCCCAGGATTGTTAGTC-AA--ACGC
gi|80144 : ATAATGAGACACAATGTCGTATATCAATCATCACTGAGAAT---GT-T-GCCGGG-C-A-G---G-G-ATTCAAACTCACGACCACTGGATTGATAGTA-AC--ACGCt
gi|80208 : ATAATGAGATGCAATGTTGTATATCAATCATCACAGAGACT---GT-G-TCTGAG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGCt
gi|80220 : ATAATGAGACACAATGTCATATATCAATCATCATGGAGACT---GT-T-GCCAGG-C-G-G---G-G-ATTCAAACTCATGGCCCCTGGATTGATAGT
gi|80098 : ACAATGAGACACAATGTTATATATCAATCATCACAGAGACT---GT-G-GCCGGA-C-G-G---G-G-ATTCAAACTCACGACTCCTGGATTGATAGTC-AGCCACGC
gi|80139 : ATAATGAGACACAATGTCATATATCAATCATCATGAAGACT---GT-T-GTTGGA-C-A-G---G-G-ATTCAAACTCACGACCTTTGGATTGATAGTC-AG--ATGCt
gi|80200 : ATAATGAGACACAATTTTGTATATCAATCATCACAGAGACT---GT-G-GCTGGA-C-G-G---G-G-ATTCAAACTCACAACCACTGGATTGATAGTC-AG--ATGCattacca
gi|80125 : ATAATGAGACGCAAAGTCATATATCAATCATCACGGAGACT---GT-T-GCTGGG-C-A-G---G-G-ATTCGAATTCACGACCCAAGGATTGATAGTC-AG--ACGC
gi|80222 : ATAATGAGACACAATGTCATATATCAATCATCACAGAGACT---GT-T-GCCGGT-C-G-G---T-G-ATTCAAACTCACGATCCCTGGATTGATAG
gi|80244 : ATAATGAGACACAATGTCATATATAAATCATCACGGAGACT---GT-T-GCCAGG-TGG-G---G-G-ATTCAAACTCATGACCCCTGGATTGATAGT
gi|80189 : ATAATAAGATACAATGTCATACATCAATCATCACAAAGTCT---GT-T-GCTGGG-C-G-G---A-G-ATTCAAATTCATGACCCCTGGATTGATAGTC-AG--ACGC
gi|80173 : ATAATGAGACA-AATGTCGTATATCAATCATCACGGAGACT---GT-T-GTCGGT-C-G-G---G-G-ATTCAAACTCATGA-CCCTGGATTGATAGTgctacagg
gi|80185 : ATAATGAGACACAATGTCATAAATCAACCATCACAGAGATT---GT-T-GCCGGG-T-G-G---G-A-ATTCAAACTCACAA-CCCTGGATTGATAGTA-AG--ATGC
gi|80198 : ATAATGAGATGCGATGTCGTATATCAACCATCACAAAGACT---GT-T-GTCAGA-T-G-G---G-A-ATTCAAACTCACGTCCCCTGGATTGATAGTC-AG--ACACattaccgactgagctaattgggcctgaccgttat
gi|80096 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-G-GCCGGA-C-G-G---GAG-ATTCGAACTCATGACCCAAGGATTGATAGT
gi|80188 : ATAATGAGACGCAATGTCATATATCAACCATCACGGAGATT---GT-G-GCTGGG-TGG-G---G-G-ATTCAAACTCAGGACCCCTGGATTGATAGT
gi|80154 : ATAATGAGACGCAATGTCATATATCATTCATCACGAAGATT---GT-T-GTCGGG-T-G-G---G-G-ATTCAAACTCACGACCGCTGG-TTAATAGTC-A
gi|80230 : ACAATGAGATGCAATGTCATATATCAATCATAACAGAGACT---AT-A-GCCAGA-T-G-A---G-G-ATTCAAACCCACAACCCCTGGATTGATGGTC-AG--ACGCtatg
gi|80108 : ATAATGAGACTCAATGTCATATATCAATCATCACAGAGACT---GC-G-CCCGGG-A-G-G---G-G-ATTCGAACTCATGACCCCAGGATTGATAGT
gi|80218 : ATAATGAGACGCAATGTTGTTTATCAATCATCACAGAGATT---GT-G-GCCGGA-T-G-G---G-G-ATTCAAACTCTTGACCCCTATATTGATAGTCAAG--AC
gi|80241 : ATAATGAGATGCAATGTCATATATCAATCATCACGGAGAAT---GT-G-GCCGAA-C-A-G---A-G-ATTCAAACTCATGA-CCCTGGATTGCTAGTC-TG--ACACatgccatag
gi|80143 : ACAATGAGACGTAATGTCATATATCAATCATCACGGAGTCT---GTATGGTCAGG-C-C-G---G-A-ATTCAAACTTATGACCCTTGGATTGATAGTT-AG--GCGCgct
gi|80147 : ATAATGAGACGCAACGTTATCTATCAATCGTCACAAAGACT---GT-G-GCCGGG-T-G-G---A-G-ATTTAAACTTACGA---CTGGATTGATAGTC-AA--ACACactac
gi|80090 : ACAATGAGACATAATGTCTTATAACAATCATTGCGGAGACT---GT-G-GCTAGG-T-G-G---G-G-ATTTAAACTCATGAACCACGGATTGATAGTA-AT--ATGCactgcca
gi|80097 : ATAATGAGACGCAATGTCGTTTATCAGTCATCATAGAGACT---GT-G-GTCGCG-T-G-G---G-G-ATTAAAACTCACGAAAC---GATTTTTAGTC-AG--GCGCttgccactgtgtgaaggggaaatactcatattggattatgaagtaattctttttagaaaatcgtagcttattcaaataaaagtcatagatacatttcagtgttttcatcagaaatgcatgaaaca
gi|80095 : ATAATGAGACGCAATGTCGTTTATCAGTCACCATAGAGACT---GT-G-GTCGCG-T-G-G---G-G-ATTAAAACTCACGAAAC---GATTTTTAGTC-AG--GCGCgttaccggatgaactaataatataattctctaatattcattttgactatttatggagcaatttttgacagaaaataatagctgattctattaaaaacaatagatacaatacagagttcc
gi|80079 : ACAGTGAGACGTAATGTCATGTATCAATCATCACAAAGACT---AG-G-GCCGGA-T-G-G---G-G-ATTCAAACTCATGAACCAAGGACTGATAGTA-AT--ACACgttaccggctgaactaaccggtcccggcacaagtgaaaatgataatagtcatattgactatttatggagcaatttttaacagaaaatagtagctgattctattaaaaacaatagatacattacagagttcc
gi|80089 : ACAATTAGACGCAATGTCATATATCACTCATCACGAAGACT---GT------GGA-C-C-GATTG-G-ATTCAAACTCACGAACCAAGGATTGATAGTA-AT--ACGCtcaccacagggggaaaaactggttttgatcattatgaagccattcttgttagaaaatcgtagcttattcaaataaaaaaacatggtacatttcagtgtttttcttagaaacacatgtaaca
gi|80087 : ACAATGAGACGTAATATCATATATCAATCATCACGAAGACT---GT-G-GCCGGA-T---G---G-G-ATTCAAAGTCATGAACCAAGGATTGCTCGTC-Accgccacagggggtgtactagtattgaccatttatgaagcaattcttttagaaaatcgtaggtaatacaaatgaaaagcatagatacatttcagtgtttctcttagaaacacatgtaaca
gi|80082 : ACAATTAGAAGTAATGTCATATATCAATCATCACAAATACT---GT-G-GTTGGA-T-G-G---G-G-ATTCAAACTCATGAACCAAGGACTGATAGTA-AT--ACGCcagtgggaaatactggtattgaccattatgaagcaattctggttagaaaatcgtagctaattcaaataaaaaacatagatacatttcagtatttctcttagaaacacatgtaaca
gi|80094 : ACAATGAGACATAATGTCATATATCAATCATCAGGAAAACT---TT-G-GCCTGA-T---G---G-G-ATTCAAACTAATGAACCAAGGATTGACAGTA-AA--ACGCtcaccacaggggaaatactggtattgaccattatgaagcaattctcattaaaaaatcgtagctaattgaaataaaaaaatcattgtatttttcagtgcttctcttagaaacacatgtaaca
gi|80080 : ACAATGAGATGTAATGTCATATATCAATCAACACGAAGACTTAGGT-T-T---GA-T-G-G---G-G-ATTCAAACTCATGAACCAAGGATTGATAGTA-AT--ACGCtcaccacaggggggaata
gi|80091 : ACAATGAAACGTAATGTCATATATCAATCATCCCGAAGACT---GT-G-GCCAGA-T-A-G---T----TTCAAACTCATGAACCAAGGGTTGATAGTT-AT--ACACtcgccaatggggggaaatactggtattgactattatgaagcaattctcgttagaaaatcgtagcttattcaaataaaaaacatagaacatttcagtgtttctcttagaaacacatgtaaca
gi|80083 : ACAATACGATGTAATGTCATATATCAATCATCATAAATATT---GT-G-GTCAGA-T-G-G---G---ATTCAAACTCATGAACCAAGGATTGATAGTA-AT--ACGCtggccacagggggaaatactggtattgaccatttatgaagcaattcttgttagaaaatataaaaaaaaatagatatatatgttaca
gi|80541 : AATGAGACGCAATGTCGTATATCAACCATAATGAAGATT---GT-G-GCCGGG-C-A-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGCtcgccacaggggaaatactggtattgaccattatgaagcaattctcattagcaaatcatagctaatttaaataaaaaaaacatagtatatttcagtttttcttttagaaacacatgtaaca
gi|80538 : AATGAGACGCAATGTCTTATATCAATCATCACAGAGATT---GT-G-GGTGGG-C-G-G---G-A-ATTCAAACTCACGACCCCTGGATTGGTAGTC-AG--ACGC
gi|80542 : AATGAGACACAATGTTGTATATCAATCATCACAGAGACT---GT-G-GCTGAG-T-G-G---G-A-ATTCAAACTCATGACCCCTGGGCTGATAGTC-AG--AC
gi|80516 : AATGAGACACAATGTCTTATATCAGTCATCACAGAGACT---GT-G-GCCGGA-T-G-T---G-G-ATTCAAACTTACAACCCCTGGATTGATAGTtcactac
gi|80539 : cAATGAGACACAATGT--TATATCAATCATCACAGAAACT---GT-G-GCCAGA-C-A-G---G-G-ATTCAAACCCATGACCCCTGGATTGATTGTA-AG--ACGC
gi|80092 : AAT-AGACGTAATGTCATATATCAATCA--ACGAAGAAT---GT-G-GCTGGA-T-G-G---G-G-ATTCAAACTTATGAACCAAGGATTCATAATA-AT--ACGC
gi|80519 : acaATGAGATGCAATGTCATATGTCAATCATCACAGAGACT---GT-G-GCCAGA-T-G-G---G-G-ATTTGAACTCGGAACTCCTGGATTGATAGTttaccacaaggggtattactggtattgaccatttgtgaatcaattcacaatcgtagctaattaaaat
gi|80514 : cgTGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGA-C-G-G---G-G-ATTCGAACTCACGACCCCAGGATTGATAGTC-AG--ACGC
gi|80577 : cacTGAGACGCAATGTCATATATCAATCATCAGGGAGACT---AT-G-GCCGAG-T-G-G---G-G-ATTCAAACTCAAGACCCCTGGATTGATAGT
gi|80078 : TGAGACGTAATGTCATACATGAATCATCACAAAGACT---GT-G-GCCGGA-T-G-G---G-G-ATTAAAACTCATGAACCAAGGATTGATAGTA-AT--ACGC
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|80623 ): TCAATCATGAGCCATGGACTGATAGTAAAATCCTCACCACAGGGAGAAATACTCATATTGACCAATTATGAAGCAATTCTTGTTAGAAAATCTTAGCTAATTCACATAGAAACCATATATACATTTCAGTGTTTTCCTCAGAAATGCATGAAA
Alignments
lowQualScore : 0 000 0 0 0 7 0 000 0 0 0 00
lowQualScore : . ... . . . . . ... . . . ..
lowQualScore : 9 777 4 4 4 7 8 777 8 4 5 66
consensus : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
Reference ( family-58 ) : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80078 : TGAGACGTAATGTCATACATGAATCATCACAAAGACT---GT-G-GCCGGA-T-G-G---G-G-ATTAAAACTCATGAACCAAGGATTGATAGTA-AT--ACGC
gi|80079 : acggACAGTGAGACGTAATGTCATGTATCAATCATCACAAAGACT---AG-G-GCCGGA-T-G-G---G-G-ATTCAAACTCATGAACCAAGGACTGATAGTA-AT--ACACtcgccacagtgggaaatactaggattgaccattatgaagcaattctcgttagaaaattgtagctaattcaaataaaaaacatagatacatttcagtgtttctcttaaaaacacatgtaaca
gi|80080 : ACAATGAGATGTAATGTCATATATCAATCAACACGAAGACTTAGGT-T----TGA-T-G-G---G-G-ATTCAAACTCATGAACCAAGGATTGATAGTA-AT--ACGCtcaccacagggggaaaaactggttttgatcattatgaagccattcttgttagaaaatcgtagcttattcaaataaaaaaacatggtacatttcagtgtttttcttagaaacacatgtaaca
gi|80082 : ACAATTAGAAGTAATGTCATATATCAATCATCACAAATACT---GT-G-GTTGGA-T-G-G---G-G-ATTCAAACTCATGAACCAAGGACTGATAGTA-AT--ACGCtcgccaatggggggaaatactggtattgactattatgaagcaattctcgttagaaaatcgtagcttattcaaataaaaaacatagaacatttcagtgtttctcttagaaacacatgtaaca
gi|80083 : ACAATACGATGTAATGTCATATATCAATCATCATAAATATT---GT-G-GTCAGA-T---G---G-G-ATTCAAACTCATGAACCAAGGATTGATAGTA-AT--ACGCtcaccacaggggaaatactggtattgaccattatgaagcaattctcattaaaaaatcgtagctaattgaaataaaaaaatcattgtatttttcagtgcttctcttagaaacacatgtaaca
gi|80087 : ACAATGAGACGTAATATCATATATCAATCATCACGAAGACT---GT-G-GCCGGA-T---G---G-G-ATTCAAAGTCATGAACCAAGGATTGCTCGTC-Atcgccacaggggaaatactggtattgaccattatgaagcaattctcattagcaaatcatagctaatttaaataaaaaaaacatagtatatttcagtttttcttttagaaacacatgtaaca
gi|80089 : ACAATTAGACGCAATGTCATATATCACTCATCACGAAGACT---GT------GGA-C-C-GATTG-G-ATTCAAACTCACGAACCAAGGATTGATAGTA-AT--ACGCcagtgggaaatactggtattgaccattatgaagcaattctggttagaaaatcgtagctaattcaaataaaaaacatagatacatttcagtatttctcttagaaacacatgtaaca
gi|80090 : ACAATGAGACATAATGTCTTATAACAATCATTGCGGAGACT---GT-G-GCTAGG-T-G-G---G-G-ATTTAAACTCATGAACCACGGATTGATAGTA-AT--ATGCccgccacagggggtgtactagtattgaccatttatgaagcaattcttttagaaaatcgtaggtaatacaaatgaaaagcatagatacatttcagtgtttctcttagaaacacatgtaaca
gi|80091 : ACAATGAAACGTAATGTCATATATCAATCATCCCGAAGACT---GT-G-GCCAGA-T-A-G---T----TTCAAACTCATGAACCAAGGGTTGATAGTT-AT--ACACttgccactgtgtgaaggggaaatactcatattggattatgaagtaattctttttagaaaatcgtagcttattcaaataaaagtcatagatacatttcagtgttttcatcagaaatgcatgaaaca
gi|80092 : AAT-AGACGTAATGTCATATATCAATCA--ACGAAGAAT---GT-G-GCTGGA-T-G-G---G-G-ATTCAAACTTATGAACCAAGGATTCATAATA-AT--ACGCtggccacagggggaaatactggtattgaccatttatgaagcaattcttgttagaaaatataaaaaaaaatagatatatatgttaca
gi|80094 : acaACAATGAGACATAATGTCATATATCAATCATCAGGAAAACT---TT-G-GCCTGA-T---G---G-G-ATTCAAACTAATGAACCAAGGATTGACAGTA-AA--ACGCttaccacaaggggtattactggtattgaccatttgtgaatcaattcacaatcgtagctaattaaaat
gi|80095 : ATAATGAGACGCAATGTCGTTTATCAGTCACCATAGAGACT---GT-G-GTCGCG-T-G-G---G-G-ATTAAAACTCACGAAAC---GATTTTTAGTC-AG--GCGCtcaccacaggggggaata
gi|80096 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-G-GCCGGA-C-G-G---GAG-ATTCGAACTCATGACCCAAGGATTGATAGTgttaccggctgaactaaccggtcccggcacaagtgaaaatgataatagtcatattgactatttatggagcaatttttaacagaaaatagtagctgattctattaaaaacaatagatacattacagagttcc
gi|80097 : ATAATGAGACGCAATGTCGTTTATCAGTCATCATAGAGACT---GT-G-GTCGCG-T-G-G---G-G-ATTAAAACTCACGAAAC---GATTTTTAGTC-AG--GCGC
gi|80098 : ACAATGAGACACAATGTTATATATCAATCATCACAGAGACT---GT-G-GCCGGA-C-G-G---G-G-ATTCAAACTCACGACTCCTGGATTGATAGTC-AGCCACGCgttaccggatgaactaataatataattctctaatattcattttgactatttatggagcaatttttgacagaaaataatagctgattctattaaaaacaatagatacaatacagagttcc
gi|80099 : ATAATGAGACATAATGTTGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-T-G-G---G-G-ATTCGAACTTATGACCCCTGGATTGATAGTA-AG--ACGCt
gi|80103 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTA-AC--ACGC
gi|80104 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GACGGA-C-G-A---G-G-ATTCAAACTCACGACCCCAGGATTGATAGTC-AG--ACG
gi|80105 : ACAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCAGG-C-A-G---G-G-ATTCAAACTCATAACCCATGGATTGATAGTC-AG--ACGC
gi|80108 : ATAATGAGACTCAATGTCATATATCAATCATCACAGAGACT---GC-G-CCCGGG-A-G-G---G-G-ATTCGAACTCATGACCCCAGGATTGATAGT
gi|80109 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAAACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTA-AG--ACGC
gi|80110 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCAAACTCATGATCCCTGGATTGATAGTC-AG--ACGCt
gi|80112 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80113 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GTCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80114 : ATAATGAGACACAATGTCATATATCAATCACCACGGAGACT---GT-T-GCCGGA-C-G-G---G-G-ATTCAAACTCACGACCCCTGAATTGATAGTC-AG--ACGC
gi|80117 : ATAATGAGACACAATGTCATATATCAATCATCACAGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCAAACTTACGACCCCTGGATTGATAGTC-AG--ACAC
gi|80120 : ATAATGAGAAACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GGCGGGTT-G-G---G-G-ATTCAAACTCACGACCCCAGGATTGATAGTC-AG--ACGC
gi|80125 : ATAATGAGACGCAAAGTCATATATCAATCATCACGGAGACT---GT-T-GCTGGG-C-A-G---G-G-ATTCGAATTCACGACCCAAGGATTGATAGTC-AG--ACGC
gi|80126 : ATAATGAGACACACTGTCGTATATCAATCATCACAAAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80127 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCAGG-C-GAG---G-G-ATTCAAACTCACGACCCCAGGATTGATAGTC-AG--ACGC
gi|80128 : ATAATGAGACACAATGTCGTATATCAATCATCACGAGGACT---GT-T-GCCGGG-TGG-G---G-G-ATTCAAACTCATGACCCCTGGATTGATAGTC-AG--ATGCgtaactgactgagctaatcgggcctggcattgaattcagaaacaatgtttat
gi|80130 : ATAATGAGACACAATGTCATATATCAATCATCACAGAGACT---GT-T-GCCGGG-CAG-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ATGC
gi|80131 : ATAATGAGACATAATGTCGTATATCAATCATCACAGAGACT---GT-T-GCCGGG-T-G-G---G-G-ATTCGAACTCAAGACCCTTGGATTAATAGTC-AG--ATGC
gi|80133 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80134 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80136 : ATAATGAGACACAATGTCGTATATCAATAATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCAAGGATTGATAGTC-AG--ACGC
gi|80137 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGA-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--GCGC
gi|80139 : ATAATGAGACACAATGTCATATATCAATCATCATGAAGACT---GT-T-GTTGGA-C-A-G---G-G-ATTCAAACTCACGACCTTTGGATTGATAGTC-AG--ATGC
gi|80143 : ACAATGAGACGTAATGTCATATATCAATCATCACGGAGTCT---GTATGGTCAGG-C-C-G---G-A-ATTCAAACTTATGACCCTTGGATTGATAGTT-AG--GCGCattacca
gi|80144 : ATAATGAGACACAATGTCGTATATCAATCATCACTGAGAAT---GT-T-GCCGGG-C-A-G---G-G-ATTCAAACTCACGACCACTGGATTGATAGTA-AC--ACGCactac
gi|80145 : ATAATGAGACACAATGTCATATATCAATCATCACAGAGACT---GT-T-GCCGGT-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGCt
gi|80146 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGAG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTA-AG--ACG
gi|80147 : ATAATGAGACGCAACGTTATCTATCAATCGTCACAAAGACT---GT-G-GCCGGG-T-G-G---A-G-ATTTAAACTTACGA---CTGGATTGATAGTC-AA--ACAC
gi|80148 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---A-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ATGCactgcca
gi|80150 : ACAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCTGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AA--ACGt
gi|80152 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACAACCCGTGGATTGATAGTC-AG--ATGCtt
gi|80154 : ATAATGAGACGCAATGTCATATATCATTCATCACGAAGATT---GT-T-GTCGGG-T-G-G---G-G-ATTCAAACTCACGACCGCTGG-TTAATAGTC-A
gi|80156 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-GAATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGCtatg
gi|80161 : ATAATGAGACACAATGTCGTATATCAATCATCGCAAAAACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGA-CCCTGGATTGATAGTC-AG--ACGC
gi|80162 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80164 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80165 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80166 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80170 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80171 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---GAG-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80172 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GGCAGG-TGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80173 : ATAATGAGACA-AATGTCGTATATCAATCATCACGGAGACT---GT-T-GTCGGT-C-G-G---G-G-ATTCAAACTCATGA-CCCTGGATTGATAGTt
gi|80174 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GCCGGG-CAG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80175 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80176 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-GAG---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80185 : ATAATGAGACACAATGTCATAAATCAACCATCACAGAGATT---GT-T-GCCGGG-T-G-G---G-A-ATTCAAACTCACAA-CCCTGGATTGATAGTA-AG--ATGC
gi|80186 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AA--ATGCattaccgactgagctaattgggcctgaccgttat
gi|80187 : ATAATGAGACACAATGTCGTATATCAATCATCACAGCGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTT-AG--ACGCg
gi|80188 : ATAATGAGACGCAATGTCATATATCAACCATCACGGAGATT---GT-G-GCTGGG-TGG-G---G-G-ATTCAAACTCAGGACCCCTGGATTGATAGT
gi|80189 : ATAATAAGATACAATGTCATACATCAATCATCACAAAGTCT---GT-T-GCTGGG-C-G-G---A-G-ATTCAAATTCATGACCCCTGGATTGATAGTC-AG--ACGC
gi|80190 : ATAATGAGAGACAATGTCGTATATCAGTCATCACAGAGACT---GT-T-GCCGAG-T-G-G---G-G-ATTCAAACTCACGACCCTTGGATTGATAGTC-AG--ACGCgctacagg
gi|80191 : ATAATGAGACACGATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AA--ACGC
gi|80196 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GACGGG-C-G-G---G-G-ATTCAAACTCATGATCCCTGGACTGATAGTC-AG--ACAC
gi|80198 : ATAATGAGATGCGATGTCGTATATCAACCATCACAAAGACT---GT-T-GTCAGA-T-G-G---G-A-ATTCAAACTCACGTCCCCTGGATTGATAGTC-AG--ACAC
gi|80200 : ATAATGAGACACAATTTTGTATATCAATCATCACAGAGACT---GT-G-GCTGGA-C-G-G---G-G-ATTCAAACTCACAACCACTGGATTGATAGTC-AG--ATGC
gi|80201 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGGTTGACAGTC-AG--ACGC
gi|80202 : ATAATGAGACGCAATGTCGTATATCAGTCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAATC-AG--ACAC
gi|80203 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTG-AG--ACGC
gi|80205 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGT
gi|80207 : ATAATGATACACAATGTCGTATATCAATCATCACGGAGACG---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACAAACCCTGGATTGATAGTC-AT--ACGC
gi|80208 : ATAATGAGATGCAATGTTGTATATCAATCATCACAGAGACT---GT-G-TCTGAG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80210 : ATAATGAGACACAATGTCGTATATCAATAATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80212 : ATAATGAGACACAATGTCATATATCAATCATTATGAAGACT---GT-T-GCCGGG-C-G-G---A-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGCgtacca
gi|80216 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGC-G-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80218 : ATAATGAGACGCAATGTTGTTTATCAATCATCACAGAGATT---GT-G-GCCGGA-T-G-G---G-G-ATTCAAACTCTTGACCCCTATATTGATAGTCAAG--AC
gi|80220 : ATAATGAGACACAATGTCATATATCAATCATCATGGAGACT---GT-T-GCCAGG-C-G-G---G-G-ATTCAAACTCATGGCCCCTGGATTGATAGTatgccatag
gi|80222 : ATAATGAGACACAATGTCATATATCAATCATCACAGAGACT---GT-T-GCCGGT-C-G-G---T-G-ATTCAAACTCACGATCCCTGGATTGATAG
gi|80224 : ATAATGAGACACAATGTCATATATCAATCATCATGGAGACT---GT-T-GCCAGG-C-G-G---G-G-ATTCGAACTCACGACCCTTGGATTGATAGTC-AG--ACGC
gi|80226 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCAAACTCACGA-CCCTGGATTGATAGTC-AG--ATGC
gi|80229 : ATAATGAGACATTATGTCGTATATCAATCATCACGGAGACT---GT-T-GCTGGG-C-G-G---G-G-ATTCGAACTCACGACCCCAGGATTGTTAGTC-AA--ACGC
gi|80230 : ACAATGAGATGCAATGTCATATATCAATCATAACAGAGACT---AT-A-GCCAGA-T-G-A---G-G-ATTCAAACCCACAACCCCTGGATTGATGGTC-AG--ACGCt
gi|80231 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCAAACTCACGACCCCTGTATTGATAGTC-AG--ACGC
gi|80241 : ATAATGAGATGCAATGTCATATATCAATCATCACGGAGAAT---GT-G-GCCGAA-C-A-G---A-G-ATTCAAACTCATGA-CCCTGGATTGCTAGTC-TG--ACAC
gi|80243 : ATAATGAGACACAATGTCGTATATCAAACATCACAAAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCAAACTCACGACCCCTAGATTGATAGTC-AG--ACGCgct
gi|80244 : ATAATGAGACACAATGTCATATATAAATCATCACGGAGACT---GT-T-GCCAGG-TGG-G---G-G-ATTCAAACTCATGACCCCTGGATTGATAGT
gi|80246 : ATAATGAGACACAATGTCGTATATCAATCATCAC--AGACT---GT-T-GCCGTG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80514 : TGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGA-C-G-G---G-G-ATTCGAACTCACGACCCCAGGATTGATAGTC-AG--ACGC
gi|80516 : cacAATGAGACACAATGTCTTATATCAGTCATCACAGAGACT---GT-G-GCCGGA-T-G-T---G-G-ATTCAAACTTACAACCCCTGGATTGATAGT
gi|80519 : cATGAGATGCAATGTCATATGTCAATCATCACAGAGACT---GT-G-GCCAGA-T-G-G---G-G-ATTTGAACTCGGAACTCCTGGATTGATAGT
gi|80538 : cgAATGAGACGCAATGTCTTATATCAATCATCACAGAGATT---GT-G-GGTGGG-C-G-G---G-A-ATTCAAACTCACGACCCCTGGATTGGTAGTC-AG--ACGC
gi|80539 : AATGAGACACAATGT--TATATCAATCATCACAGAAACT---GT-G-GCCAGA-C-A-G---G-G-ATTCAAACCCATGACCCCTGGATTGATTGTA-AG--ACGC
gi|80541 : AATGAGACGCAATGTCGTATATCAACCATAATGAAGATT---GT-G-GCCGGG-C-A-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80542 : AATGAGACACAATGTTGTATATCAATCATCACAGAGACT---GT-G-GCTGAG-T-G-G---G-A-ATTCAAACTCATGACCCCTGGGCTGATAGTC-AG--AC
gi|80577 : TGAGACGCAATGTCATATATCAATCATCAGGGAGACT---AT-G-GCCGAG-T-G-G---G-G-ATTCAAACTCAAGACCCCTGGATTGATAGTtcactac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|80623 ): TCAATCATGAGCCATGGACTGATAGTAAAATCCTCACCACAGGGAGAAATACTCATATTGACCAATTATGAAGCAATTCTTGTTAGAAAATCTTAGCTAATTCACATAGAAACCATATATACATTTCAGTGTTTTCCTCAGAAATGCATGAAA
Alignments
lowQualScore : 0 000 0 0 0 7 0 000 0 0 0 00
lowQualScore : . ... . . . . . ... . . . ..
lowQualScore : 9 777 4 4 4 7 8 777 8 4 5 66
consensus : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
Reference ( family-58 ) : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80078 : TGAGACGTAATGTCATACATGAATCATCACAAAGACT---GT-G-GCCGGA-T-G-G---G-G-ATTAAAACTCATGAACCAAGGATTGATAGTA-AT--ACGC
gi|80079 : acggACAGTGAGACGTAATGTCATGTATCAATCATCACAAAGACT---AG-G-GCCGGA-T-G-G---G-G-ATTCAAACTCATGAACCAAGGACTGATAGTA-AT--ACACtcgccacagtgggaaatactaggattgaccattatgaagcaattctcgttagaaaattgtagctaattcaaataaaaaacatagatacatttcagtgtttctcttaaaaacacatgtaaca
gi|80080 : ACAATGAGATGTAATGTCATATATCAATCAACACGAAGACTTAGGT-T----TGA-T-G-G---G-G-ATTCAAACTCATGAACCAAGGATTGATAGTA-AT--ACGCtcaccacagggggaaaaactggttttgatcattatgaagccattcttgttagaaaatcgtagcttattcaaataaaaaaacatggtacatttcagtgtttttcttagaaacacatgtaaca
gi|80082 : ACAATTAGAAGTAATGTCATATATCAATCATCACAAATACT---GT-G-GTTGGA-T-G-G---G-G-ATTCAAACTCATGAACCAAGGACTGATAGTA-AT--ACGCtcgccaatggggggaaatactggtattgactattatgaagcaattctcgttagaaaatcgtagcttattcaaataaaaaacatagaacatttcagtgtttctcttagaaacacatgtaaca
gi|80083 : ACAATACGATGTAATGTCATATATCAATCATCATAAATATT---GT-G-GTCAGA-T---G---G-G-ATTCAAACTCATGAACCAAGGATTGATAGTA-AT--ACGCtcaccacaggggaaatactggtattgaccattatgaagcaattctcattaaaaaatcgtagctaattgaaataaaaaaatcattgtatttttcagtgcttctcttagaaacacatgtaaca
gi|80087 : ACAATGAGACGTAATATCATATATCAATCATCACGAAGACT---GT-G-GCCGGA-T---G---G-G-ATTCAAAGTCATGAACCAAGGATTGCTCGTC-Atcgccacaggggaaatactggtattgaccattatgaagcaattctcattagcaaatcatagctaatttaaataaaaaaaacatagtatatttcagtttttcttttagaaacacatgtaaca
gi|80089 : ACAATTAGACGCAATGTCATATATCACTCATCACGAAGACT---GT------GGA-C-C-GATTG-G-ATTCAAACTCACGAACCAAGGATTGATAGTA-AT--ACGCcagtgggaaatactggtattgaccattatgaagcaattctggttagaaaatcgtagctaattcaaataaaaaacatagatacatttcagtatttctcttagaaacacatgtaaca
gi|80090 : ACAATGAGACATAATGTCTTATAACAATCATTGCGGAGACT---GT-G-GCTAGG-T-G-G---G-G-ATTTAAACTCATGAACCACGGATTGATAGTA-AT--ATGCccgccacagggggtgtactagtattgaccatttatgaagcaattcttttagaaaatcgtaggtaatacaaatgaaaagcatagatacatttcagtgtttctcttagaaacacatgtaaca
gi|80091 : ACAATGAAACGTAATGTCATATATCAATCATCCCGAAGACT---GT-G-GCCAGA-T-A-G---T----TTCAAACTCATGAACCAAGGGTTGATAGTT-AT--ACACttgccactgtgtgaaggggaaatactcatattggattatgaagtaattctttttagaaaatcgtagcttattcaaataaaagtcatagatacatttcagtgttttcatcagaaatgcatgaaaca
gi|80092 : AAT-AGACGTAATGTCATATATCAATCA--ACGAAGAAT---GT-G-GCTGGA-T-G-G---G-G-ATTCAAACTTATGAACCAAGGATTCATAATA-AT--ACGCtggccacagggggaaatactggtattgaccatttatgaagcaattcttgttagaaaatataaaaaaaaatagatatatatgttaca
gi|80094 : acaACAATGAGACATAATGTCATATATCAATCATCAGGAAAACT---TT-G-GCCTGA-T---G---G-G-ATTCAAACTAATGAACCAAGGATTGACAGTA-AA--ACGCttaccacaaggggtattactggtattgaccatttgtgaatcaattcacaatcgtagctaattaaaat
gi|80095 : ATAATGAGACGCAATGTCGTTTATCAGTCACCATAGAGACT---GT-G-GTCGCG-T-G-G---G-G-ATTAAAACTCACGAAAC---GATTTTTAGTC-AG--GCGCtcaccacaggggggaata
gi|80096 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-G-GCCGGA-C-G-G---GAG-ATTCGAACTCATGACCCAAGGATTGATAGTgttaccggctgaactaaccggtcccggcacaagtgaaaatgataatagtcatattgactatttatggagcaatttttaacagaaaatagtagctgattctattaaaaacaatagatacattacagagttcc
gi|80097 : ATAATGAGACGCAATGTCGTTTATCAGTCATCATAGAGACT---GT-G-GTCGCG-T-G-G---G-G-ATTAAAACTCACGAAAC---GATTTTTAGTC-AG--GCGC
gi|80098 : ACAATGAGACACAATGTTATATATCAATCATCACAGAGACT---GT-G-GCCGGA-C-G-G---G-G-ATTCAAACTCACGACTCCTGGATTGATAGTC-AGCCACGCgttaccggatgaactaataatataattctctaatattcattttgactatttatggagcaatttttgacagaaaataatagctgattctattaaaaacaatagatacaatacagagttcc
gi|80099 : ATAATGAGACATAATGTTGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-T-G-G---G-G-ATTCGAACTTATGACCCCTGGATTGATAGTA-AG--ACGCt
gi|80103 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTA-AC--ACGC
gi|80104 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GACGGA-C-G-A---G-G-ATTCAAACTCACGACCCCAGGATTGATAGTC-AG--ACG
gi|80105 : ACAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCAGG-C-A-G---G-G-ATTCAAACTCATAACCCATGGATTGATAGTC-AG--ACGC
gi|80108 : ATAATGAGACTCAATGTCATATATCAATCATCACAGAGACT---GC-G-CCCGGG-A-G-G---G-G-ATTCGAACTCATGACCCCAGGATTGATAGT
gi|80109 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAAACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTA-AG--ACGC
gi|80110 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCAAACTCATGATCCCTGGATTGATAGTC-AG--ACGCt
gi|80112 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80113 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GTCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80114 : ATAATGAGACACAATGTCATATATCAATCACCACGGAGACT---GT-T-GCCGGA-C-G-G---G-G-ATTCAAACTCACGACCCCTGAATTGATAGTC-AG--ACGC
gi|80117 : ATAATGAGACACAATGTCATATATCAATCATCACAGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCAAACTTACGACCCCTGGATTGATAGTC-AG--ACAC
gi|80120 : ATAATGAGAAACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GGCGGGTT-G-G---G-G-ATTCAAACTCACGACCCCAGGATTGATAGTC-AG--ACGC
gi|80125 : ATAATGAGACGCAAAGTCATATATCAATCATCACGGAGACT---GT-T-GCTGGG-C-A-G---G-G-ATTCGAATTCACGACCCAAGGATTGATAGTC-AG--ACGC
gi|80126 : ATAATGAGACACACTGTCGTATATCAATCATCACAAAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80127 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCAGG-C-GAG---G-G-ATTCAAACTCACGACCCCAGGATTGATAGTC-AG--ACGC
gi|80128 : ATAATGAGACACAATGTCGTATATCAATCATCACGAGGACT---GT-T-GCCGGG-TGG-G---G-G-ATTCAAACTCATGACCCCTGGATTGATAGTC-AG--ATGCgtaactgactgagctaatcgggcctggcattgaattcagaaacaatgtttat
gi|80130 : ATAATGAGACACAATGTCATATATCAATCATCACAGAGACT---GT-T-GCCGGG-CAG-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ATGC
gi|80131 : ATAATGAGACATAATGTCGTATATCAATCATCACAGAGACT---GT-T-GCCGGG-T-G-G---G-G-ATTCGAACTCAAGACCCTTGGATTAATAGTC-AG--ATGC
gi|80133 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80134 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80136 : ATAATGAGACACAATGTCGTATATCAATAATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCAAGGATTGATAGTC-AG--ACGC
gi|80137 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGA-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--GCGC
gi|80139 : ATAATGAGACACAATGTCATATATCAATCATCATGAAGACT---GT-T-GTTGGA-C-A-G---G-G-ATTCAAACTCACGACCTTTGGATTGATAGTC-AG--ATGC
gi|80143 : ACAATGAGACGTAATGTCATATATCAATCATCACGGAGTCT---GTATGGTCAGG-C-C-G---G-A-ATTCAAACTTATGACCCTTGGATTGATAGTT-AG--GCGCattacca
gi|80144 : ATAATGAGACACAATGTCGTATATCAATCATCACTGAGAAT---GT-T-GCCGGG-C-A-G---G-G-ATTCAAACTCACGACCACTGGATTGATAGTA-AC--ACGCactac
gi|80145 : ATAATGAGACACAATGTCATATATCAATCATCACAGAGACT---GT-T-GCCGGT-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGCt
gi|80146 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGAG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTA-AG--ACG
gi|80147 : ATAATGAGACGCAACGTTATCTATCAATCGTCACAAAGACT---GT-G-GCCGGG-T-G-G---A-G-ATTTAAACTTACGA---CTGGATTGATAGTC-AA--ACAC
gi|80148 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---A-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ATGCactgcca
gi|80150 : ACAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCTGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AA--ACGt
gi|80152 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACAACCCGTGGATTGATAGTC-AG--ATGCtt
gi|80154 : ATAATGAGACGCAATGTCATATATCATTCATCACGAAGATT---GT-T-GTCGGG-T-G-G---G-G-ATTCAAACTCACGACCGCTGG-TTAATAGTC-A
gi|80156 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-GAATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGCtatg
gi|80161 : ATAATGAGACACAATGTCGTATATCAATCATCGCAAAAACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGA-CCCTGGATTGATAGTC-AG--ACGC
gi|80162 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80164 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80165 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80166 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80170 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80171 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---GAG-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80172 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GGCAGG-TGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80173 : ATAATGAGACA-AATGTCGTATATCAATCATCACGGAGACT---GT-T-GTCGGT-C-G-G---G-G-ATTCAAACTCATGA-CCCTGGATTGATAGTt
gi|80174 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GCCGGG-CAG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80175 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80176 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-GAG---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80185 : ATAATGAGACACAATGTCATAAATCAACCATCACAGAGATT---GT-T-GCCGGG-T-G-G---G-A-ATTCAAACTCACAA-CCCTGGATTGATAGTA-AG--ATGC
gi|80186 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AA--ATGCattaccgactgagctaattgggcctgaccgttat
gi|80187 : ATAATGAGACACAATGTCGTATATCAATCATCACAGCGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTT-AG--ACGCg
gi|80188 : ATAATGAGACGCAATGTCATATATCAACCATCACGGAGATT---GT-G-GCTGGG-TGG-G---G-G-ATTCAAACTCAGGACCCCTGGATTGATAGT
gi|80189 : ATAATAAGATACAATGTCATACATCAATCATCACAAAGTCT---GT-T-GCTGGG-C-G-G---A-G-ATTCAAATTCATGACCCCTGGATTGATAGTC-AG--ACGC
gi|80190 : ATAATGAGAGACAATGTCGTATATCAGTCATCACAGAGACT---GT-T-GCCGAG-T-G-G---G-G-ATTCAAACTCACGACCCTTGGATTGATAGTC-AG--ACGCgctacagg
gi|80191 : ATAATGAGACACGATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AA--ACGC
gi|80196 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GACGGG-C-G-G---G-G-ATTCAAACTCATGATCCCTGGACTGATAGTC-AG--ACAC
gi|80198 : ATAATGAGATGCGATGTCGTATATCAACCATCACAAAGACT---GT-T-GTCAGA-T-G-G---G-A-ATTCAAACTCACGTCCCCTGGATTGATAGTC-AG--ACAC
gi|80200 : ATAATGAGACACAATTTTGTATATCAATCATCACAGAGACT---GT-G-GCTGGA-C-G-G---G-G-ATTCAAACTCACAACCACTGGATTGATAGTC-AG--ATGC
gi|80201 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGGTTGACAGTC-AG--ACGC
gi|80202 : ATAATGAGACGCAATGTCGTATATCAGTCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAATC-AG--ACAC
gi|80203 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTG-AG--ACGC
gi|80205 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGT
gi|80207 : ATAATGATACACAATGTCGTATATCAATCATCACGGAGACG---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACAAACCCTGGATTGATAGTC-AT--ACGC
gi|80208 : ATAATGAGATGCAATGTTGTATATCAATCATCACAGAGACT---GT-G-TCTGAG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80210 : ATAATGAGACACAATGTCGTATATCAATAATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80212 : ATAATGAGACACAATGTCATATATCAATCATTATGAAGACT---GT-T-GCCGGG-C-G-G---A-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGCgtacca
gi|80216 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGC-G-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80218 : ATAATGAGACGCAATGTTGTTTATCAATCATCACAGAGATT---GT-G-GCCGGA-T-G-G---G-G-ATTCAAACTCTTGACCCCTATATTGATAGTCAAG--AC
gi|80220 : ATAATGAGACACAATGTCATATATCAATCATCATGGAGACT---GT-T-GCCAGG-C-G-G---G-G-ATTCAAACTCATGGCCCCTGGATTGATAGTatgccatag
gi|80222 : ATAATGAGACACAATGTCATATATCAATCATCACAGAGACT---GT-T-GCCGGT-C-G-G---T-G-ATTCAAACTCACGATCCCTGGATTGATAG
gi|80224 : ATAATGAGACACAATGTCATATATCAATCATCATGGAGACT---GT-T-GCCAGG-C-G-G---G-G-ATTCGAACTCACGACCCTTGGATTGATAGTC-AG--ACGC
gi|80226 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCAAACTCACGA-CCCTGGATTGATAGTC-AG--ATGC
gi|80229 : ATAATGAGACATTATGTCGTATATCAATCATCACGGAGACT---GT-T-GCTGGG-C-G-G---G-G-ATTCGAACTCACGACCCCAGGATTGTTAGTC-AA--ACGC
gi|80230 : ACAATGAGATGCAATGTCATATATCAATCATAACAGAGACT---AT-A-GCCAGA-T-G-A---G-G-ATTCAAACCCACAACCCCTGGATTGATGGTC-AG--ACGCt
gi|80231 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCAAACTCACGACCCCTGTATTGATAGTC-AG--ACGC
gi|80241 : ATAATGAGATGCAATGTCATATATCAATCATCACGGAGAAT---GT-G-GCCGAA-C-A-G---A-G-ATTCAAACTCATGA-CCCTGGATTGCTAGTC-TG--ACAC
gi|80243 : ATAATGAGACACAATGTCGTATATCAAACATCACAAAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCAAACTCACGACCCCTAGATTGATAGTC-AG--ACGCgct
gi|80244 : ATAATGAGACACAATGTCATATATAAATCATCACGGAGACT---GT-T-GCCAGG-TGG-G---G-G-ATTCAAACTCATGACCCCTGGATTGATAGT
gi|80246 : ATAATGAGACACAATGTCGTATATCAATCATCAC--AGACT---GT-T-GCCGTG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80514 : TGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGA-C-G-G---G-G-ATTCGAACTCACGACCCCAGGATTGATAGTC-AG--ACGC
gi|80516 : cacAATGAGACACAATGTCTTATATCAGTCATCACAGAGACT---GT-G-GCCGGA-T-G-T---G-G-ATTCAAACTTACAACCCCTGGATTGATAGT
gi|80519 : cATGAGATGCAATGTCATATGTCAATCATCACAGAGACT---GT-G-GCCAGA-T-G-G---G-G-ATTTGAACTCGGAACTCCTGGATTGATAGT
gi|80538 : cgAATGAGACGCAATGTCTTATATCAATCATCACAGAGATT---GT-G-GGTGGG-C-G-G---G-A-ATTCAAACTCACGACCCCTGGATTGGTAGTC-AG--ACGC
gi|80539 : AATGAGACACAATGT--TATATCAATCATCACAGAAACT---GT-G-GCCAGA-C-A-G---G-G-ATTCAAACCCATGACCCCTGGATTGATTGTA-AG--ACGC
gi|80541 : AATGAGACGCAATGTCGTATATCAACCATAATGAAGATT---GT-G-GCCGGG-C-A-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80542 : AATGAGACACAATGTTGTATATCAATCATCACAGAGACT---GT-G-GCTGAG-T-G-G---G-A-ATTCAAACTCATGACCCCTGGGCTGATAGTC-AG--AC
gi|80577 : TGAGACGCAATGTCATATATCAATCATCAGGGAGACT---AT-G-GCCGAG-T-G-G---G-G-ATTCAAACTCAAGACCCCTGGATTGATAGTtcactac
blockSeqs : G
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blockSeqCons :
originalCons : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
finalCons : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|80623 ): TCAATCATGAGCCATGGACTGATAGTAAAATCCTCACCACAGGGAGAAATACTCATATTGACCAATTATGAAGCAATTCTTGTTAGAAAATCTTAGCTAATTCACATAGAAACCATATATACATTTCAGTGTTTTCCTCAGAAATGCATGAAA
Alignments
lowQualScore : 0 000 0 0 0 7 0 000 0 0 0 00
lowQualScore : . ... . . . . . ... . . . ..
lowQualScore : 9 777 4 4 4 7 8 777 8 4 5 66
consensus : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
Reference ( family-58 ) : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80078 : TGAGACGTAATGTCATACATGAATCATCACAAAGACT---GT-G-GCCGGA-T-G-G---G-G-ATTAAAACTCATGAACCAAGGATTGATAGTA-AT--ACGC
gi|80079 : acggACAGTGAGACGTAATGTCATGTATCAATCATCACAAAGACT---AG-G-GCCGGA-T-G-G---G-G-ATTCAAACTCATGAACCAAGGACTGATAGTA-AT--ACACtcgccacagtgggaaatactaggattgaccattatgaagcaattctcgttagaaaattgtagctaattcaaataaaaaacatagatacatttcagtgtttctcttaaaaacacatgtaaca
gi|80080 : ACAATGAGATGTAATGTCATATATCAATCAACACGAAGACTTAGGT-T----TGA-T-G-G---G-G-ATTCAAACTCATGAACCAAGGATTGATAGTA-AT--ACGCtcaccacagggggaaaaactggttttgatcattatgaagccattcttgttagaaaatcgtagcttattcaaataaaaaaacatggtacatttcagtgtttttcttagaaacacatgtaaca
gi|80082 : ACAATTAGAAGTAATGTCATATATCAATCATCACAAATACT---GT-G-GTTGGA-T-G-G---G-G-ATTCAAACTCATGAACCAAGGACTGATAGTA-AT--ACGCtcgccaatggggggaaatactggtattgactattatgaagcaattctcgttagaaaatcgtagcttattcaaataaaaaacatagaacatttcagtgtttctcttagaaacacatgtaaca
gi|80083 : ACAATACGATGTAATGTCATATATCAATCATCATAAATATT---GT-G-GTCAGA-T---G---G-G-ATTCAAACTCATGAACCAAGGATTGATAGTA-AT--ACGCtcaccacaggggaaatactggtattgaccattatgaagcaattctcattaaaaaatcgtagctaattgaaataaaaaaatcattgtatttttcagtgcttctcttagaaacacatgtaaca
gi|80087 : ACAATGAGACGTAATATCATATATCAATCATCACGAAGACT---GT-G-GCCGGA-T---G---G-G-ATTCAAAGTCATGAACCAAGGATTGCTCGTC-Atcgccacaggggaaatactggtattgaccattatgaagcaattctcattagcaaatcatagctaatttaaataaaaaaaacatagtatatttcagtttttcttttagaaacacatgtaaca
gi|80089 : ACAATTAGACGCAATGTCATATATCACTCATCACGAAGACT---GT------GGA-C-C-GATTG-G-ATTCAAACTCACGAACCAAGGATTGATAGTA-AT--ACGCcagtgggaaatactggtattgaccattatgaagcaattctggttagaaaatcgtagctaattcaaataaaaaacatagatacatttcagtatttctcttagaaacacatgtaaca
gi|80090 : ACAATGAGACATAATGTCTTATAACAATCATTGCGGAGACT---GT-G-GCTAGG-T-G-G---G-G-ATTTAAACTCATGAACCACGGATTGATAGTA-AT--ATGCccgccacagggggtgtactagtattgaccatttatgaagcaattcttttagaaaatcgtaggtaatacaaatgaaaagcatagatacatttcagtgtttctcttagaaacacatgtaaca
gi|80091 : ACAATGAAACGTAATGTCATATATCAATCATCCCGAAGACT---GT-G-GCCAGA-T-A-G---T----TTCAAACTCATGAACCAAGGGTTGATAGTT-AT--ACACttgccactgtgtgaaggggaaatactcatattggattatgaagtaattctttttagaaaatcgtagcttattcaaataaaagtcatagatacatttcagtgttttcatcagaaatgcatgaaaca
gi|80092 : AAT-AGACGTAATGTCATATATCAATCA--ACGAAGAAT---GT-G-GCTGGA-T-G-G---G-G-ATTCAAACTTATGAACCAAGGATTCATAATA-AT--ACGCtggccacagggggaaatactggtattgaccatttatgaagcaattcttgttagaaaatataaaaaaaaatagatatatatgttaca
gi|80094 : acaACAATGAGACATAATGTCATATATCAATCATCAGGAAAACT---TT-G-GCCTGA-T---G---G-G-ATTCAAACTAATGAACCAAGGATTGACAGTA-AA--ACGCttaccacaaggggtattactggtattgaccatttgtgaatcaattcacaatcgtagctaattaaaat
gi|80095 : ATAATGAGACGCAATGTCGTTTATCAGTCACCATAGAGACT---GT-G-GTCGCG-T-G-G---G-G-ATTAAAACTCACGAAAC---GATTTTTAGTC-AG--GCGCtcaccacaggggggaata
gi|80096 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-G-GCCGGA-C-G-G---GAG-ATTCGAACTCATGACCCAAGGATTGATAGTgttaccggctgaactaaccggtcccggcacaagtgaaaatgataatagtcatattgactatttatggagcaatttttaacagaaaatagtagctgattctattaaaaacaatagatacattacagagttcc
gi|80097 : ATAATGAGACGCAATGTCGTTTATCAGTCATCATAGAGACT---GT-G-GTCGCG-T-G-G---G-G-ATTAAAACTCACGAAAC---GATTTTTAGTC-AG--GCGC
gi|80098 : ACAATGAGACACAATGTTATATATCAATCATCACAGAGACT---GT-G-GCCGGA-C-G-G---G-G-ATTCAAACTCACGACTCCTGGATTGATAGTC-AGCCACGCgttaccggatgaactaataatataattctctaatattcattttgactatttatggagcaatttttgacagaaaataatagctgattctattaaaaacaatagatacaatacagagttcc
gi|80099 : ATAATGAGACATAATGTTGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-T-G-G---G-G-ATTCGAACTTATGACCCCTGGATTGATAGTA-AG--ACGCt
gi|80103 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTA-AC--ACGC
gi|80104 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GACGGA-C-G-A---G-G-ATTCAAACTCACGACCCCAGGATTGATAGTC-AG--ACG
gi|80105 : ACAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCAGG-C-A-G---G-G-ATTCAAACTCATAACCCATGGATTGATAGTC-AG--ACGC
gi|80108 : ATAATGAGACTCAATGTCATATATCAATCATCACAGAGACT---GC-G-CCCGGG-A-G-G---G-G-ATTCGAACTCATGACCCCAGGATTGATAGT
gi|80109 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAAACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTA-AG--ACGC
gi|80110 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCAAACTCATGATCCCTGGATTGATAGTC-AG--ACGCt
gi|80112 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80113 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GTCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80114 : ATAATGAGACACAATGTCATATATCAATCACCACGGAGACT---GT-T-GCCGGA-C-G-G---G-G-ATTCAAACTCACGACCCCTGAATTGATAGTC-AG--ACGC
gi|80117 : ATAATGAGACACAATGTCATATATCAATCATCACAGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCAAACTTACGACCCCTGGATTGATAGTC-AG--ACAC
gi|80120 : ATAATGAGAAACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GGCGGGTT-G-G---G-G-ATTCAAACTCACGACCCCAGGATTGATAGTC-AG--ACGC
gi|80125 : ATAATGAGACGCAAAGTCATATATCAATCATCACGGAGACT---GT-T-GCTGGG-C-A-G---G-G-ATTCGAATTCACGACCCAAGGATTGATAGTC-AG--ACGC
gi|80126 : ATAATGAGACACACTGTCGTATATCAATCATCACAAAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80127 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCAGG-C-GAG---G-G-ATTCAAACTCACGACCCCAGGATTGATAGTC-AG--ACGC
gi|80128 : ATAATGAGACACAATGTCGTATATCAATCATCACGAGGACT---GT-T-GCCGGG-TGG-G---G-G-ATTCAAACTCATGACCCCTGGATTGATAGTC-AG--ATGCgtaactgactgagctaatcgggcctggcattgaattcagaaacaatgtttat
gi|80130 : ATAATGAGACACAATGTCATATATCAATCATCACAGAGACT---GT-T-GCCGGG-CAG-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ATGC
gi|80131 : ATAATGAGACATAATGTCGTATATCAATCATCACAGAGACT---GT-T-GCCGGG-T-G-G---G-G-ATTCGAACTCAAGACCCTTGGATTAATAGTC-AG--ATGC
gi|80133 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80134 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80136 : ATAATGAGACACAATGTCGTATATCAATAATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCAAGGATTGATAGTC-AG--ACGC
gi|80137 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGA-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--GCGC
gi|80139 : ATAATGAGACACAATGTCATATATCAATCATCATGAAGACT---GT-T-GTTGGA-C-A-G---G-G-ATTCAAACTCACGACCTTTGGATTGATAGTC-AG--ATGC
gi|80143 : ACAATGAGACGTAATGTCATATATCAATCATCACGGAGTCT---GTATGGTCAGG-C-C-G---G-A-ATTCAAACTTATGACCCTTGGATTGATAGTT-AG--GCGCattacca
gi|80144 : ATAATGAGACACAATGTCGTATATCAATCATCACTGAGAAT---GT-T-GCCGGG-C-A-G---G-G-ATTCAAACTCACGACCACTGGATTGATAGTA-AC--ACGCactac
gi|80145 : ATAATGAGACACAATGTCATATATCAATCATCACAGAGACT---GT-T-GCCGGT-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGCt
gi|80146 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGAG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTA-AG--ACG
gi|80147 : ATAATGAGACGCAACGTTATCTATCAATCGTCACAAAGACT---GT-G-GCCGGG-T-G-G---A-G-ATTTAAACTTACGA---CTGGATTGATAGTC-AA--ACAC
gi|80148 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---A-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ATGCactgcca
gi|80150 : ACAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCTGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AA--ACGt
gi|80152 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACAACCCGTGGATTGATAGTC-AG--ATGCtt
gi|80154 : ATAATGAGACGCAATGTCATATATCATTCATCACGAAGATT---GT-T-GTCGGG-T-G-G---G-G-ATTCAAACTCACGACCGCTGG-TTAATAGTC-A
gi|80156 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-GAATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGCtatg
gi|80161 : ATAATGAGACACAATGTCGTATATCAATCATCGCAAAAACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGA-CCCTGGATTGATAGTC-AG--ACGC
gi|80162 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80164 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80165 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80166 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80170 : ATAATGAGACGCAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80171 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---GAG-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80172 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GGCAGG-TGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80173 : ATAATGAGACA-AATGTCGTATATCAATCATCACGGAGACT---GT-T-GTCGGT-C-G-G---G-G-ATTCAAACTCATGA-CCCTGGATTGATAGTt
gi|80174 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GCCGGG-CAG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80175 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80176 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-GAG---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80185 : ATAATGAGACACAATGTCATAAATCAACCATCACAGAGATT---GT-T-GCCGGG-T-G-G---G-A-ATTCAAACTCACAA-CCCTGGATTGATAGTA-AG--ATGC
gi|80186 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AA--ATGCattaccgactgagctaattgggcctgaccgttat
gi|80187 : ATAATGAGACACAATGTCGTATATCAATCATCACAGCGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTT-AG--ACGCg
gi|80188 : ATAATGAGACGCAATGTCATATATCAACCATCACGGAGATT---GT-G-GCTGGG-TGG-G---G-G-ATTCAAACTCAGGACCCCTGGATTGATAGT
gi|80189 : ATAATAAGATACAATGTCATACATCAATCATCACAAAGTCT---GT-T-GCTGGG-C-G-G---A-G-ATTCAAATTCATGACCCCTGGATTGATAGTC-AG--ACGC
gi|80190 : ATAATGAGAGACAATGTCGTATATCAGTCATCACAGAGACT---GT-T-GCCGAG-T-G-G---G-G-ATTCAAACTCACGACCCTTGGATTGATAGTC-AG--ACGCgctacagg
gi|80191 : ATAATGAGACACGATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AA--ACGC
gi|80196 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GACGGG-C-G-G---G-G-ATTCAAACTCATGATCCCTGGACTGATAGTC-AG--ACAC
gi|80198 : ATAATGAGATGCGATGTCGTATATCAACCATCACAAAGACT---GT-T-GTCAGA-T-G-G---G-A-ATTCAAACTCACGTCCCCTGGATTGATAGTC-AG--ACAC
gi|80200 : ATAATGAGACACAATTTTGTATATCAATCATCACAGAGACT---GT-G-GCTGGA-C-G-G---G-G-ATTCAAACTCACAACCACTGGATTGATAGTC-AG--ATGC
gi|80201 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGGTTGACAGTC-AG--ACGC
gi|80202 : ATAATGAGACGCAATGTCGTATATCAGTCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAATC-AG--ACAC
gi|80203 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTG-AG--ACGC
gi|80205 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGT
gi|80207 : ATAATGATACACAATGTCGTATATCAATCATCACGGAGACG---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACAAACCCTGGATTGATAGTC-AT--ACGC
gi|80208 : ATAATGAGATGCAATGTTGTATATCAATCATCACAGAGACT---GT-G-TCTGAG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80210 : ATAATGAGACACAATGTCGTATATCAATAATCACGGAGACT---GT-T-GCCGGG-C-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80212 : ATAATGAGACACAATGTCATATATCAATCATTATGAAGACT---GT-T-GCCGGG-C-G-G---A-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGCgtacca
gi|80216 : ATAATGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGC-G-G-G---G-G-ATTCGAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80218 : ATAATGAGACGCAATGTTGTTTATCAATCATCACAGAGATT---GT-G-GCCGGA-T-G-G---G-G-ATTCAAACTCTTGACCCCTATATTGATAGTCAAG--AC
gi|80220 : ATAATGAGACACAATGTCATATATCAATCATCATGGAGACT---GT-T-GCCAGG-C-G-G---G-G-ATTCAAACTCATGGCCCCTGGATTGATAGTatgccatag
gi|80222 : ATAATGAGACACAATGTCATATATCAATCATCACAGAGACT---GT-T-GCCGGT-C-G-G---T-G-ATTCAAACTCACGATCCCTGGATTGATAG
gi|80224 : ATAATGAGACACAATGTCATATATCAATCATCATGGAGACT---GT-T-GCCAGG-C-G-G---G-G-ATTCGAACTCACGACCCTTGGATTGATAGTC-AG--ACGC
gi|80226 : ATAATGAGACACAATGTCGTATATCAATCATCACAGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCAAACTCACGA-CCCTGGATTGATAGTC-AG--ATGC
gi|80229 : ATAATGAGACATTATGTCGTATATCAATCATCACGGAGACT---GT-T-GCTGGG-C-G-G---G-G-ATTCGAACTCACGACCCCAGGATTGTTAGTC-AA--ACGC
gi|80230 : ACAATGAGATGCAATGTCATATATCAATCATAACAGAGACT---AT-A-GCCAGA-T-G-A---G-G-ATTCAAACCCACAACCCCTGGATTGATGGTC-AG--ACGCt
gi|80231 : ATAATGAGACACAATGTCATATATCAATCATCACGGAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCAAACTCACGACCCCTGTATTGATAGTC-AG--ACGC
gi|80241 : ATAATGAGATGCAATGTCATATATCAATCATCACGGAGAAT---GT-G-GCCGAA-C-A-G---A-G-ATTCAAACTCATGA-CCCTGGATTGCTAGTC-TG--ACAC
gi|80243 : ATAATGAGACACAATGTCGTATATCAAACATCACAAAGACT---GT-T-GCCGGG-CGG-G---G-G-ATTCAAACTCACGACCCCTAGATTGATAGTC-AG--ACGCgct
gi|80244 : ATAATGAGACACAATGTCATATATAAATCATCACGGAGACT---GT-T-GCCAGG-TGG-G---G-G-ATTCAAACTCATGACCCCTGGATTGATAGT
gi|80246 : ATAATGAGACACAATGTCGTATATCAATCATCAC--AGACT---GT-T-GCCGTG-C-G-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80514 : TGAGACACAATGTCGTATATCAATCATCACGGAGACT---GT-T-GCCGGA-C-G-G---G-G-ATTCGAACTCACGACCCCAGGATTGATAGTC-AG--ACGC
gi|80516 : cacAATGAGACACAATGTCTTATATCAGTCATCACAGAGACT---GT-G-GCCGGA-T-G-T---G-G-ATTCAAACTTACAACCCCTGGATTGATAGT
gi|80519 : cATGAGATGCAATGTCATATGTCAATCATCACAGAGACT---GT-G-GCCAGA-T-G-G---G-G-ATTTGAACTCGGAACTCCTGGATTGATAGT
gi|80538 : cgAATGAGACGCAATGTCTTATATCAATCATCACAGAGATT---GT-G-GGTGGG-C-G-G---G-A-ATTCAAACTCACGACCCCTGGATTGGTAGTC-AG--ACGC
gi|80539 : AATGAGACACAATGT--TATATCAATCATCACAGAAACT---GT-G-GCCAGA-C-A-G---G-G-ATTCAAACCCATGACCCCTGGATTGATTGTA-AG--ACGC
gi|80541 : AATGAGACGCAATGTCGTATATCAACCATAATGAAGATT---GT-G-GCCGGG-C-A-G---G-G-ATTCAAACTCACGACCCCTGGATTGATAGTC-AG--ACGC
gi|80542 : AATGAGACACAATGTTGTATATCAATCATCACAGAGACT---GT-G-GCTGAG-T-G-G---G-A-ATTCAAACTCATGACCCCTGGGCTGATAGTC-AG--AC
gi|80577 : TGAGACGCAATGTCATATATCAATCATCAGGGAGACT---AT-G-GCCGAG-T-G-G---G-G-ATTCAAACTCAAGACCCCTGGATTGATAGTtcactac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|80623 ): TCAATCATGAGCCATGGACTGATAGTAAAATCCTCACCACAGGGAGAAATACTCATATTGACCAATTATGAAGCAATTCTTGTTAGAAAATCTTAGCTAATTCACATAGAAACCATATATACATTTCAGTGTTTTCCTCAGAAATGCATGAAA