lowQualScore : 1111 1 11111 22222222222 1111111 11111 444444444444444 1 1
lowQualScore : 2222 8888 1 2 33333 22 55 0 5 0 1 33333333333 1 1 11 4 9 1111111 2 33 77777 555 3 44444 111111111111111 0 1 7 99 6 6 4
lowQualScore : .... .... . . ..... .. .. . . . . ........... . . .. . . ....... . .. ..... ... . ..... ............... . . . .. . . .
lowQualScore : 7777 7777 1 4 00000 55 00 9 5 9 8 44444444444 1 1 44 2 9 8888888 4 99 77777 222 4 33333 777777777777777 8 3 3 22 0 0 0
consensus : ATTAAGTT----TAAAACTAGTCAAC-T-GATGACCCC-CAGATTTTGAAAATGACCCCCAG-----ATTTTT--AG--TCAG-TGGGTCATCAA-TG-A-CCC-----C-CA--AA-AA-A--T-TGGAGCTGGAGAAAACACTG-----C-TT-TAC--TAT-----ATTC-ATTTAGCCTCAATTTAA-----TTTTTGT---------------GATTTTTTTCTGGCATACTGTCTTAAAATGTTGTATCAAAGTTTATAAACTATTCTCTAGATTGAATGCTTAATAAGTT--ATCATCAACTGTAAACAGTCATATAAAGTGNACAATTTGCTAATACATGTA
Reference ( gi|3499 ) : ATTAAGTT----TAAAACTAGTCAA--T-GATGACCCC-CAGATTTTGAAAATAACCCCCAG-----ATTTTT--AG--TCAG-TGGGTCATCAA-TG-A-CCC-----C-C---AA-AA-A--T-TGGAGCTGGATAAAACACTG-----C-TT-TAC--TAT-----ATCC-ATTTAGCCTCAATTTAA-----TTTTTGT---------------GATTTTTTTCTGACATACTGTCTTAAAATGTTGTATCAAAGTTTATAAACTATTCTCTAGATTGAATGCCTAATAAGTT--ATCATCAGCTGTAAACAGTCGTATAAAGTGAACAATTTGCTAATACATGTA
gi|3496 : ATTAAGTT----TAAAACTAGTCAA--T-GATGA---------------------CCCCCAG-----ATTTTT--AG--TCAG-TGGGTCATCAA-TG-A-CCC-----C-C---AA-AA-A--T-TGGAGCTGGATAAAACACTG-----C-TT-TAC--TAT-----ATTC-ATTTAGCCTCAATTTAA-----TTTTTGT---------------GA--TTTTTCTGGCATACTGTCTTAAAATGTTGTATCAAAGTTTGTAAACTATTCTCTAGATTGAATGCTTAATAAGTTAAATTATCAACTGTAAACAGTCATATAAAGTGTACAATTTGCTAATACATGTA
gi|3497 : ATTAAGTT----TAAAACTAGTCAA--T-GATGA---------------------CCCCCAG-----ATTTTT--AG--TCAG-TGGGTCATCAA-TG-A-CCC-----C-C---AA-AA-A--T-TGGAGCTGGATAAAACACTG-----C-TT-TGC--TAT-----ATTC-ATTTAGCCTCAATTTAA-----TTTTTAT---------------GATTTTT--CTGGCATACTGTCTTAGAATGTTGTATCAAAGTTTGTAAACTATTCTCTAGATTGAATGCTTAATAAGTT--ATTATCAACTGTAAACAGTCATATAAAGTGTACAATTTGCTAACACATGTA
gi|3498 : ATTAAGTT----TAAAACTAGTCAA--T-GGTGAC---------------------CCCCAG-----ATTTTC--AG--TCAG-TGGGTCATCAA-TG-A-CCC-----C-C---AA-AT-A--T-TGGAGCTGGATAAAACACTG-----C-TT-TAC--TAT-----ATTC-ATTTAGTCTCAATTTAA-----TTTTTGT---------------GATTTTT--CTGGCATATTGTCTTAAAATGTTGTATCCAAGTTTATAAACTATTCTCTAGATTGAATGCTTAATAAGTT--ATCATCAACTGTAAACAGTCATATAAAGTGTACAATTTGCTAATACATGTA
gi|3500 : ATTAATTT----TAAAACTAGTCAA--T-GATGACCAC-CAGATTTTGAAAATGACCCCCAG-----ATTTTT-----------------------TG-A-CCC-----C-C---GA-AA-A--T-TGGAGTTGGATAAAACATAG-----C-TT-TAC--TAT-----ATTC-ATTTAGCCTCAATTTAA-----TTCTTGT---------------GATTTT-TTCTGACATACTGTTTTAAAATGTTGTATCAAAGTTTATAAACTATTCTCTAGATTCAATGCTTAATAAGTT--ATCAGCAACTGTAAACAGTCATATAAAGTGAACAATTTGCTAATACATGTA
gi|3501 : ATTAAGTT----TAAAACTACTCAA--T-GATGACACC-AAGATTTCGAAAATGACCCCGAG-----ATTTTT--AG--TCAG-TGGGTCACCAA-TG-A-CCC-----C-A---TA-AA-T--T-TGAAGCTGGATAAAACACTG-----C-TT-TACTATAT-----ATTT-ATTCAGCCTCAATTTAATTTTCTTTTTGTAATTTATAATATAGCGATTTTTGTCTGACATACTGTCTTAAAATGTTGTATTAAATTTTATAAACTATTCTCTAGATTGAATTC--------TT--ATCATCAACTGTAAACAGTCAAATAAAGTGAACAATTTGCTAATACATGTA
gi|3502 : ATTAAGTT----TAAAACTAGTCAA--TTGATGACCCC-CAGATTTTGAAAATGACCCCTAG-----ATTTTT--AG--TCAG-TGGGTCATCAA-TG-A-CCC-----C-CA--AA-AA-A--T-TGAAGCTGGAGAAAACACTG-----C-
gi|3503 : ATTAAGTT----TAAAACTAGTCAA--TTGATGACCCC-CAGATTTTGAAAATGACCCCTAG-----ATTTTT--AG--TCAA-TGGGTCATCAA-TG-ACCCC-----C-C---AA-AA-A--T-TGAAGCTGGAGAAAACACTG--------T-CAC--TAT-----
gi|3513 : ATTAAGTT----TAAAACTAGTCAAC-T-GATGACCCC-CAGATTTTGAAAATGACCCCCAG-----ATTTTT--AG--TCAG-TGGGTCATCAA-TG-A-CCC-----T-A---AA-AT-A--T-TGGAGCTGGAGAAAACACTG-----gatt
gi|3506 : ATTAAGTT----TAAAACCAGTCAA--TTGATGACCCC-CAGATTTTGAAAATGACCCCTAG-----ATTTTT--AG--TCAG-TGGGTCATCAA-TG-A-CCC-----C-TA--AA-AA-A--T-TGGAGCTGGAGAAAACACTG-----
gi|3508 : ATTAAATT----TAAAACTAGTCAA--TTGATGACCCC-CAGATTTTGAAAATGACCCCTAG-----ATTTTT--AG--TCAG-TGGGTCATCAA-TG-A-CCC-----C-CA--AA-AA-A--T-TGAAGCTGAAGAAAACACTG--------T-TAC--T
gi|3514 : ATTAAGTT----TAAAACTAGTCAAC-T-GATGACCCC-CAGATTTTGAAAATGACCCCCAG-----ATTTTA--AG--TCAG-TGGGTCATCAA-TG-A-CCC-----C-CG--AA-AA-A--T-TTGAGCTGGAGAAAACACTG-----
gi|3504 : ATTAAGTT----TAAAACTAGTCAA--T-TATGACCGC-CAGATTTTGAAAATGACCCCTAG-----ATTTTT--AG--TCAG-TGGGTCATCAA-TG-A-CCC-----C-CA--AA-AA-A--T-TGAAGCTGGAGAAAACACTG-----
gi|3507 : ATCAAGTT----TAAAACTAGTCAA--TTGATGACCCC-CAGATTTTGAAAATGACCCTTAG-----ATTTTT--AG--TCAG-TGGGTCATCAA-TG-A-CCC-----C-CA--AA-AA-A--T-TGAAGCTGGAGAAAACACTG-----
gi|3505 : ATTAAGTT----TAAAACTAGTCAA--TTGATGACCTT-CAGATTTTGAAAATGACCCCTAG-----ATTTTT--AG--TCAG-TGGGTCATCAA-TG-ACCCC-----C-C---AA-AA-A--T-TGAAGCTGGAGAAAACACTG-----
gi|3512 : ATTAAGTT----TAAAACTAGTCAAC-T-GATGACCCC-CACATTTTGAAAATGACCCCCAG-----ATTTTT--AG--TGAG-TGGGTCATCAA-TG-A-CCC-----C-TA--AA-AA-A--T-TGGAGCTGGAGAAAACACTG-----
gi|3510 : ATTAAGTT----TAAAACTAGTCAAT-T-GATGA-CCC-CAGATTTTGAAAATGACCCCTAG-----ATTTTT--AG--TCAG-TGGGTCATCAA-TG-A-CCC-----C-CA--AA-AA-A--C-TGAAGCTGGAGAAAACACTG-----
gi|3518 : ATTAAGTT----TAAAACTACTCAAC-T-GATGACCTC-CAGATTTTGAAAATGACCCCCAG-----ATTTTT--AG--TCAG-TTGGTCATCAA-TG-A-CCT-----C-CA--AA-AA-A--T-TGGAGCTGGAGAAAATACTG-----A-TC-TA
gi|3515 : ATTAAGTT----TAAAACTAGTCAA--TTGATGACCCC-AAGATTTTGAAAATGACCCCTAG-----ATTTTT--AG--TCAG-TGGGTCATCAA-TG-A-CCC-----CAA---AA-AA-A--T-TTAAGCTGGAGAAAACACTG-----TATT-TGA--TAT-----A----AATTATCCTTAA
gi|3509 : ATTAAGTT----TAAAACTAGTCAG--TTGATGACCCC-CAGATTTTGAAAATGACCCCTTG-----TTTTTT--AG--TCAG-TGGGTCATCAA-TG-A-CCC-----C-CA--AA-AA-A--T-TGAAGCTAGAGAAAACACTG-----C-AT-T
gi|3517 : ATTAAGTT----TAAAACTAGTCAAC-T-GATAACCCC-CAGATTTTGAAAATGACCCCCAG-----ATTTAA--AG--TCAA-TGGGTCATCAA-TG-A-CCC-----CAA---AA-AA-A--T-TGGAGCTGGAGAAAACACTG-----
gi|3522 : ATTAAGTT----TAA-----GTCAAC-T-GATGACCCC-CAGATTTTGAAAATGACCCCCAG-----ATTTTT--AG--TCAG-TGGGTCATCAA-TG-A-ACC-----C-C---AA-AACA--T-TGGAGCTGGAGAAAACACTG--------G-TAC--CATGTGTAATCTAAGTCATCCCCAA--TAT-----TTTTTGT---------------
gi|3520 : ATTTAGTT----TAAAACTAGTCAAC-T-GATGA-CCC-CAGATTTTGAAAATGACCCCCAG-----ATTTTT--AG--TCAG-TAGGTCATTAA-TG-A-CCC-----C-A---AA-TA-A--T-TGGGGCTGGAGAAAACACTG-----T-TA-TAt
gi|3523 : ATTTAGTT----TAAAACTAGTCAAC-T-GATGACCCC-CAAATTTTGAAAATGACCCCCAG-----ATTTTT--AG--CCAG-TGGGTCATCAG-TG-A-CCC-----C-CA--AA-AA-A--A-TGGGGCTGGAGAAAATGCTG-----C-gttatt
gi|3521 : ATTAAGTT----TAAAACTAGTCAAC-T-GATGACCCC-CATATTTTGAAAATGAACCCCAG-----ATTTTA--AG--TCAG-TTGGTCATCAA-TG-A-CCCCT---C-C---GATAA-A--T-TGGAGCTGGAGAAAACACTG-----------AC--TAT-----
gi|3519 : ATTAAGTT----TAAAACTGGTCAAC-T-GATAACCCC-CAGACTTTGAAAATGACCCCGAA-----ATTTTG--GG--TCAG-TGGGTCATCAT-TG-A-CCC-----C-CA--AA-AA-A--G-TGGGGCTGGATAAAACACTG-----T-TTATAC---AT-----ATttgagttacattta
gi|3524 : ATTTAGTT----TAAAACTAGTCAAC-T-GAAGACCCC-CAGATTTTGAAAATGATCCCCAG-----ATTTTT--AG--TCAG-TGGATCATTAA-TG-A-CCC-----C-C---AA-AA-AATT-TGG-GCTGGAGAAAACACTt
gi|3511 : ATTTAATT----TAAAACTAGTAAA--------------CTGATTCTGAAAATTACCCTGAG-----ATTTTT--AG--TCAG-TGGATCATCAA-TG-A-CCC-----C-C---AA-AA-A--T-TGGAGCTGGATAAAACACTG-----
gi|3525 : ATTAAGTT----TAAAACTAGTCAAC-T-GATGACCC---AGATTTTGAAAATGACCCCCAG-----ATTTTT--AG--TGAG----------------A-CCC-----CTC---AA-AA-A--T-TGGAGCTGGAGAAAACACTGAATGAC-TT-GAT--TAC-----AT
gi|3516 : ATTAAGTT----TAAAACTAGTCGAACT-GATGACC----------------------CCAG-----ATTTTG--AG--TCAA-TGGATCATCAA-TG----TC-----C-CAAAAA-AA-A--T-TGGAGCTGGAGAAAACACTG-----
gi|3526 : TTAAGTT----TAAAACTAGTCAAC-T-GATGACCCAACAGATTTTGAAAATGACCCTCAG-----ATTTTA--AG--TCAG-TGGGTCATCAA-TG-A-CCC-----C-CA--AA-AA-A--T-TTGAGCTGGAGAAAACACTG-----A-TT-GTC--TAT-----Aaaactggatatatttttatgcc
gi|3527 : TTAAGTTGATTTAAAACTAGTCAAC-T-GATGACCCC-CAGATTTTGAAAATGACCCCCAG-----ATTTTT------TCAG-TGGGTCATTAA-TGAA-CCC-----C-A---AA-AA-A--T-TGGAGCTGGAGAAAACACTG-----
gi|3502 : GTCAT--T-GATGACCCA-CTGACT--AAAAAT-----CTAGGGGTCATTTTC--AAAATCTG-GGGGTCATCAATTG-A-Catgtatattta
gi|3506 : attaagtttaaaactaGTCAT--T-GATGACCCA-CTGACT--AAAAAT-----CTAGGGGTCATTTTC--AAAATCTG-GGGGTCATCAATTG-A-Cccccaaaaaattgaagctggagaaaacactgc
gi|3508 : attaagtttaaaaccaGTCAT--T-GATGACCCA-CTGACT--AAAAAT-----CTAGGGGTCATTTTC--AAAATCTG-GGGGTCATCAATTG-A-Cccctaaaaaattggagctggagaaaacactg
gi|3507 : attaaatttaaaactaGTCAT--T-GATGACCCA-CTGACT--AAAAAT----CTAAGGGTC-ATTTTC--AAAATCTG-GGGGTCATCAATTG-A-Cccccaaaaaattgaagctgaagaaaacactgttact
gi|3510 : atcaagtttaaaactaGTCAT--T-GATGACCCA-CTGA--CTAAAAAT-----CTAGGGGTCATTTTCAAAA--TCTG--GGGTCATCAATTG-A-Cccccaaaaaattgaagctggagaaaacactg
gi|3526 : attaagtttaaaactaGTCAT--T-GATGACCCA-CTGACTT--AAAAT----CTGAGGGTC-ATTTTCAAAA--TCTGTTGGGTCATCAGTTG-A-Cccccaaaaaactgaagctggagaaaacactg
gi|3528 : ttaagtttaaaactaAAAATGACCCCCAG-----ATTTTT--AG--TCAG-TGGGTCATCAA-TG-A-CCC-----C-CA--AA-AA-A--T-TAGAGCTGGAGAAAACACTG-----T-TT---------------CCC-A--TGGC--CAATTTAA-----TTccccaaaaaatttgagctggagaaaacactgattgtctata
gi|3529 : tcATGACCCCCAG-----ATTTTT--AG--TCAG-TGGGTCATCAA-TG-A-CCC-----CAA---AA-AA-A--T-TGAACCTGGAGAAAACACTG-----g
gi|3496 : CTCCA------ATTTTT--GG--------GGGTCATTGA-TG-A-CCCACTGAC-T---AA-AA-A--TCTGGGG
gi|3497 : attaagtttaaaactagtcaatgatgacCTCCA------ATTTTT--GG--------GGGTCATTGA-TG-A-CCCACTGAC-T---AA-AA-A--TCTGGGGctggataaaacactgctttactatattcatttagcctcaatttaatttttgtgatttttctggcatactgtcttaaaatgttgtatcaaagtttgtaaactattctctagattgaatgcttaataagttaaattatcaactgtaaacagtcatataaagtgtacaatttgctaatacatgta
gi|3506 : attaagtttaaaactagtcaatgatgacCTCCAA-----TTTTTT--AG--------GGGTCATTGA-TG-A-CCCACTGAC-T---AA-AA-A--T-ctggataaaacactgctttgctatattcatttagcctcaatttaatttttatgatttttctggcatactgtcttagaatgttgtatcaaagtttgtaaactattctctagattgaatgcttaataagttattatcaactgtaaacagtcatataaagtgtacaatttgctaacacatgta
gi|3512 : attaagtttaaaaccagtcaattgatgacccccagattttgaaaatgacccctagCTCCAA-----TTTTTT--AG--------GGGTCATTGA-TG-A-CCCACTCAC-T---AA-AA-A--TCTGGGGctggagaaaacactg
gi|3524 : attaagtttaaaactagtcaactgatgacccccacattttgaaaatgacCCCAA-----ATTTTT------T--G-GGGGTCATTAA-TG-A-TCCACTGAC-T---AA-AA-A--TCTGGGGctggagaaaacactg
gi|3530 : atttagtttaaaactagtcaactgaagacccccagattttgaaaatgatTTTTTCTGACATACTGTCTTAAAATATTGTATCAAAGTTTATAAACTATTCTCTAGATTGAATAC--------TT--ATCATCAACTGTAAGCAGTCATATAAAGTGAACAATTTGCTAATACATGTActggagaaaacact
Alignments
lowQualScore : 1111111 11111 11111 333333333333333 11
lowQualScore : 2222 1 4 11 11 3333333 2 33 7777 2 55 3 00000 22222 555555555555555 66 7 77 1
lowQualScore : .... . . .. .. ....... . .. .... . .. . ..... ..... ............... .. . .. .
lowQualScore : 7777 2 4 44 66 9999999 0 11 4444 5 88 6 00000 55555 777777777777777 77 1 99 0
consensus : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGGAGCTGGAGAAAACACTG-----C-TT-TAC--TAT----AT-T-CATTTA-G-----CCTCAATTTAA-----TTTTTGT---------------GATTTTTTTCTGGCATACTGTCTTAAAATGTTGTATCAAAGTTTATAAACTATTCTCTAGATTGAATGCTTAATAAGTT--ATCATCAACTGTAAACAGTCATATAAAGTGNACAATTTGCTAATACATGTA
Reference ( family-578 ) : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGGAGCTGGAGAAAACACTG-----C-TT-TAC--TAT----AT-T-CATTTA-G-----CCTCAATTTAA-----TTTTTGT---------------GATTTTTTTCTGGCATACTGTCTTAAAATGTTGTATCAAAGTTTATAAACTATTCTCTAGATTGAATGCTTAATAAGTT--ATCATCAACTGTAAACAGTCATATAAAGTGNACAATTTGCTAATACATGTA
gi|3496 : ATTAAGTT----TAAAACTAGTC-AA-------------------TGA---TGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAA-TTGGAGCTGGATAAAACACTG-----C-TT-TAC--TAT----AT-T-CATTTA-G-----CCTCAATTTAA-----TTTTTGT---------------GATTTT--TCTGGCATACTGTCTTAAAATGTTGTATCAAAGTTTGTAAACTATTCTCTAGATTGAATGCTTAATAAGTTAAATTATCAACTGTAAACAGTCATATAAAGTGTACAATTTGCTAATACATGTA
gi|3497 : ATTAAGTT----TAAAACTAGTC-AA-------------------TGA---TGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAA-TTGGAGCTGGATAAAACACTG-----C-TT-TGC--TAT----AT-T-CATTTA-G-----CCTCAATTTAA-----TTTTTAT---------------GATTTT--TCTGGCATACTGTCTTAGAATGTTGTATCAAAGTTTGTAAACTATTCTCTAGATTGAATGCTTAATAAGTT--ATTATCAACTGTAAACAGTCATATAAAGTGTACAATTTGCTAACACATGTA
gi|3498 : ATTAAGTT----TAAAACTAGTC-AA-------------------TGG---TGACCCCCAGATTTTCAGTCAGTGGGTCATCAATGACCC--CCAAATA-TTGGAGCTGGATAAAACACTG-----C-TT-TAC--TAT----AT-T-CATTTA-G-----TCTCAATTTAA-----TTTTTGT---------------GATTTT--TCTGGCATATTGTCTTAAAATGTTGTATCCAAGTTTATAAACTATTCTCTAGATTGAATGCTTAATAAGTT--ATCATCAACTGTAAACAGTCATATAAAGTGTACAATTTGCTAATACATGTA
gi|3499 : ATTAAGTT----TAAAACTAGTC-AA-TGATGACCCC-CAGATTTTGAAAATAACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAA-ATTGGAGCTGGATAAAACACTG-----C-TT-TAC--TAT----AT-C-CATTTA-G-----CCTCAATTTAA-----TTTTTGT---------------GATTTTTTTCTGACATACTGTCTTAAAATGTTGTATCAAAGTTTATAAACTATTCTCTAGATTGAATGCCTAATAAGTT--ATCATCAGCTGTAAACAGTCGTATAAAGTGAACAATTTGCTAATACATGTA
gi|3500 : ATTAATTT----TAAAACTAGTC-AA-TGATGACCAC-CAGATTTTGAAAATGACCCCCAGATTTTT-----------------TGACCC--CCGAAAA-TTGGAGTTGGATAAAACATAG-----C-TT-TAC--TAT----AT-T-CATTTA-G-----CCTCAATTTAA-----TTCTTGT---------------GATTTTTT-CTGACATACTGTTTTAAAATGTTGTATCAAAGTTTATAAACTATTCTCTAGATTCAATGCTTAATAAGTT--ATCAGCAACTGTAAACAGTCATATAAAGTGAACAATTTGCTAATACATGTA
gi|3501 : ATTAAGTT----TAAAACTACTC-AA-TGATGACACC-AAGATTTCGAAAATGACCCCGAGATTTTTAGTCAGTGGGTCACCAATGA-CC--CCATAAATTTGAAGCTGGATAAAACACTG-----C-TT-TACTATAT----AT-T-TATTCA-G-----CCTCAATTTAATTTTCTTTTTGTAATTTATAATATAGCGATTTTTGTCTGACATACTGTCTTAAAATGTTGTATTAAATTTTATAAACTATTCTCTAGATTGAATTC--------TT--ATCATCAACTGTAAACAGTCAAATAAAGTGAACAATTTGCTAATACATGTA
gi|3502 : ATTAAGTT----TAAAACTAGTC-AATTGATGACCCC-CAGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGAAGCTGGAGAAAACACTG-----C-
gi|3503 : ATTAAGTT----TAAAACTAGTC-AATTGATGACCCC-CAGATTTTGAAAATGACCCCTAGATTTTTAGTCAATGGGTCATCAATGACCC--CCCAAAAATTGAAGCTGGAGAAAACACTG--------T-CAC--TATG---AT-T-
gi|3504 : ATTAAGTT----TAAAACTAGTC-AATT-ATGACCGC-CAGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGAAGCTGGAGAAAACACTG-----
gi|3505 : ATTAAGTT----TAAAACTAGTC-AATTGATGACCTT-CAGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCCAAAAATTGAAGCTGGAGAAAACACTG-----
gi|3506 : ATTAAGTT----TAAAACCAGTC-AATTGATGACCCC-CAGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CTAAAAAATTGGAGCTGGAGAAAACACTG-----
gi|3507 : ATCAAGTT----TAAAACTAGTC-AATTGATGACCCC-CAGATTTTGAAAATGACCCTTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGAAGCTGGAGAAAACACTG-----
gi|3508 : ATTAAATT----TAAAACTAGTC-AATTGATGACCCC-CAGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGAAGCTGAAGAAAACACTG--------T-TAC--T
gi|3509 : ATTAAGTT----TAAAACTAGTC-AGTTGATGACCCC-CAGATTTTGAAAATGACCCCTTGTTTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGAAGCTAGAGAAAACACTG-----C-AT-T
gi|3510 : ATTAAGTT----TAAAACTAGTC-AATTGATGACCCC--AGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAACTGAAGCTGGAGAAAACACTG-----
gi|3511 : ATTTAATT----TAAAACTAGTA-AACTGAT------------TCTGAAAATTACCCTGAGATTTTTAGTCAGTGGATCATCAATGACCC--CC-AAAAATTGGAGCTGGATAAAACACTG-----
gi|3512 : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CACATTTTGAAAATGACCCCCAGATTTTTAGTGAGTGGGTCATCAATGACCC--CTAAAAAATTGGAGCTGGAGAAAACACTG-----
gi|3513 : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGA-CC--CTAAAATATTGGAGCTGGAGAAAACACTG-----
gi|3514 : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTAAGTCAGTGGGTCATCAATGACCC--CCGAAAAATTTGAGCTGGAGAAAACACTG-----
gi|3515 : ATTAAGTT----TAAAACTAGTC-AATTGATGACCCC-AAGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CAAAAAAATTTAAGCTGGAGAAAACACTG-----TATT-TGA--TAT----A-----AATTA-T-----CCTTAA
gi|3516 : ATTAAGTT----TAAAACTAGTCGAACTGATGACCCC----------------------AGATTTTGAGTCAATGGATCATCAATGTCCC--AAAAAAAATTGGAGCTGGAGAAAACACTGAAA--C-TG-GA---TAT----AT-T---TTTATG-----CC
gi|3517 : ATTAAGTT----TAAAACTAGTC-AACTGATAACCCC-CAGATTTTGAAAATGACCCCCAGATTTAAAGTCAATGGGTCATCAATGACCC--CAAAAAAATTGGAGCTGGAGAAAACACTG-----
gi|3518 : ATTAAGTT----TAAAACTACTC-AACTGATGACCTC-CAGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTTGGTCATCAATGACCT--CCAAAAAATTGGAGCTGGAGAAAATACTG-----A-TC-TA
gi|3519 : ATTAAGTT----TAAAACTGGTC-AACTGATAACCCC-CAGACTTTGAAAATGACCCCGAAATTTTGGGTCAGTGGGTCATCATTGACCC--CCAAAAAAGTGGGGCTGGATAAAACACTG-----T-TTATAC---AT----AT-T-
gi|3520 : ATTTAGTT----TAAAACTAGTC-AACTGATGACCCC--AGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTAGGTCATTAATGA-CC--CCAAATAATTGGGGCTGGAGAAAACACTG-----T-TA-TAG--T-T----AT-T-
gi|3521 : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CATATTTTGAAAATGAACCCCAGATTTTAAGTCAGTTGGTCATCAATGACCCCTCCGATAAATTGGAGCTGGAGAAAACACTG-----------AC--TATTTGAGT-TACATTTA-
gi|3522 : ATTAAGTT----TAA-----GTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGAACC--CCAAAACATTGGAGCTGGAGAAAACACTG--------G-TAC--CAT----GTGT-AATCTA-AGTCATCCCCAA--TAT-----TTTTTGT---------------
gi|3523 : ATTTAGTT----TAAAACTAGTC-AACTGATGACCCC-CAAATTTTGAAAATGACCCCCAGATTTTTAGCCAGTGGGTCATCAGTGACCC--CCAAAAAAATGGGGCTGGAGAAAATGCTG-----C-t
gi|3524 : ATTTAGTT----TAAAACTAGTC-AACTGAAGACCCC-CAGATTTTGAAAATGATCCCCAGATTTTTAGTCAGTGGATCATTAATGACCC--CCAAAAAATTTGGGCTGGAGAAAACACT
gi|3525 : ATTAAGTT----TAAAACTAGTC-AACTGATGACCC---AGATTTTGAAAATGACCCCCAGATTTTTAGTGAG-------------ACCC--CTCAAAAATTGGAGCTGGAGAAAACACTGAATGAC-TT-GAT--TAC----AT-
gi|3526 : TTAAGTT----TAAAACTAGTC-AACTGATGACCCAACAGATTTTGAAAATGACCCTCAGATTTTAAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTTGAGCTGGAGAAAACACTG-----A-TT-GTC--TAT----A
gi|3527 : TTAAGTTGATTTAAAACTAGTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTT--TCAGTGGGTCATTAATGAACC--CCAAAAAATTGGAGCTGGAGAAAACACTG-----A-T----G--TAT----AT-T-TA
gi|3528 : AAAATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTAGAGCTGGAGAAAACACTG-------TT-TCC--CA--------------TG-G-----C--CAATTTAA-----TT
gi|3529 : tcATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CAAAAAAATTGAACCTGGAGAAAACACTG-----g
gi|3530 : TTTTTCTGACATACTGTCTTAAAATATTGTATCAAAGTTTATAAACTATTCTCTAGATTGAATAC--------TT--ATCATCAACTGTAAGCAGTCATATAAAGTGAACAATTTGCTAATACATGTA
Alignments
lowQualScore : 1111111 11111 11111 333333333333333 11
lowQualScore : 2222 1 4 11 11 3333333 2 33 7777 2 55 3 00000 22222 555555555555555 66 7 77 1
lowQualScore : .... . . .. .. ....... . .. .... . .. . ..... ..... ............... .. . .. .
lowQualScore : 7777 2 4 44 66 9999999 0 11 4444 5 88 6 00000 55555 777777777777777 77 1 99 0
consensus : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGGAGCTGGAGAAAACACTG-----C-TT-TAC--TAT----AT-T-CATTTA-G-----CCTCAATTTAA-----TTTTTGT---------------GATTTTTTTCTGGCATACTGTCTTAAAATGTTGTATCAAAGTTTATAAACTATTCTCTAGATTGAATGCTTAATAAGTT--ATCATCAACTGTAAACAGTCATATAAAGTGNACAATTTGCTAATACATGTA
Reference ( family-578 ) : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGGAGCTGGAGAAAACACTG-----C-TT-TAC--TAT----AT-T-CATTTA-G-----CCTCAATTTAA-----TTTTTGT---------------GATTTTTTTCTGGCATACTGTCTTAAAATGTTGTATCAAAGTTTATAAACTATTCTCTAGATTGAATGCTTAATAAGTT--ATCATCAACTGTAAACAGTCATATAAAGTGNACAATTTGCTAATACATGTA
gi|3496 : ATTAAGTT----TAAAACTAGTC-AA-------------------TGA---TGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAA-TTGGAGCTGGATAAAACACTG-----C-TT-TAC--TAT----AT-T-CATTTA-G-----CCTCAATTTAA-----TTTTTGT---------------GATTTT--TCTGGCATACTGTCTTAAAATGTTGTATCAAAGTTTGTAAACTATTCTCTAGATTGAATGCTTAATAAGTTAAATTATCAACTGTAAACAGTCATATAAAGTGTACAATTTGCTAATACATGTA
gi|3497 : ATTAAGTT----TAAAACTAGTC-AA-------------------TGA---TGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAA-TTGGAGCTGGATAAAACACTG-----C-TT-TGC--TAT----AT-T-CATTTA-G-----CCTCAATTTAA-----TTTTTAT---------------GATTTT--TCTGGCATACTGTCTTAGAATGTTGTATCAAAGTTTGTAAACTATTCTCTAGATTGAATGCTTAATAAGTT--ATTATCAACTGTAAACAGTCATATAAAGTGTACAATTTGCTAACACATGTA
gi|3498 : ATTAAGTT----TAAAACTAGTC-AA-------------------TGG---TGACCCCCAGATTTTCAGTCAGTGGGTCATCAATGACCC--CCAAATA-TTGGAGCTGGATAAAACACTG-----C-TT-TAC--TAT----AT-T-CATTTA-G-----TCTCAATTTAA-----TTTTTGT---------------GATTTT--TCTGGCATATTGTCTTAAAATGTTGTATCCAAGTTTATAAACTATTCTCTAGATTGAATGCTTAATAAGTT--ATCATCAACTGTAAACAGTCATATAAAGTGTACAATTTGCTAATACATGTA
gi|3499 : ATTAAGTT----TAAAACTAGTC-AA-TGATGACCCC-CAGATTTTGAAAATAACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAA-ATTGGAGCTGGATAAAACACTG-----C-TT-TAC--TAT----AT-C-CATTTA-G-----CCTCAATTTAA-----TTTTTGT---------------GATTTTTTTCTGACATACTGTCTTAAAATGTTGTATCAAAGTTTATAAACTATTCTCTAGATTGAATGCCTAATAAGTT--ATCATCAGCTGTAAACAGTCGTATAAAGTGAACAATTTGCTAATACATGTA
gi|3500 : ATTAATTT----TAAAACTAGTC-AA-TGATGACCAC-CAGATTTTGAAAATGACCCCCAGATTTTT-----------------TGACCC--CCGAAAA-TTGGAGTTGGATAAAACATAG-----C-TT-TAC--TAT----AT-T-CATTTA-G-----CCTCAATTTAA-----TTCTTGT---------------GATTTTTT-CTGACATACTGTTTTAAAATGTTGTATCAAAGTTTATAAACTATTCTCTAGATTCAATGCTTAATAAGTT--ATCAGCAACTGTAAACAGTCATATAAAGTGAACAATTTGCTAATACATGTA
gi|3501 : ATTAAGTT----TAAAACTACTC-AA-TGATGACACC-AAGATTTCGAAAATGACCCCGAGATTTTTAGTCAGTGGGTCACCAATGA-CC--CCATAAATTTGAAGCTGGATAAAACACTG-----C-TT-TACTATAT----AT-T-TATTCA-G-----CCTCAATTTAATTTTCTTTTTGTAATTTATAATATAGCGATTTTTGTCTGACATACTGTCTTAAAATGTTGTATTAAATTTTATAAACTATTCTCTAGATTGAATTC--------TT--ATCATCAACTGTAAACAGTCAAATAAAGTGAACAATTTGCTAATACATGTA
gi|3502 : ATTAAGTT----TAAAACTAGTC-AATTGATGACCCC-CAGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGAAGCTGGAGAAAACACTG-----C-
gi|3503 : ATTAAGTT----TAAAACTAGTC-AATTGATGACCCC-CAGATTTTGAAAATGACCCCTAGATTTTTAGTCAATGGGTCATCAATGACCC--CCCAAAAATTGAAGCTGGAGAAAACACTG--------T-CAC--TATG---AT-T-
gi|3504 : ATTAAGTT----TAAAACTAGTC-AATT-ATGACCGC-CAGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGAAGCTGGAGAAAACACTG-----
gi|3505 : ATTAAGTT----TAAAACTAGTC-AATTGATGACCTT-CAGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCCAAAAATTGAAGCTGGAGAAAACACTG-----
gi|3506 : ATTAAGTT----TAAAACCAGTC-AATTGATGACCCC-CAGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CTAAAAAATTGGAGCTGGAGAAAACACTG-----
gi|3507 : ATCAAGTT----TAAAACTAGTC-AATTGATGACCCC-CAGATTTTGAAAATGACCCTTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGAAGCTGGAGAAAACACTG-----
gi|3508 : ATTAAATT----TAAAACTAGTC-AATTGATGACCCC-CAGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGAAGCTGAAGAAAACACTG--------T-TAC--T
gi|3509 : ATTAAGTT----TAAAACTAGTC-AGTTGATGACCCC-CAGATTTTGAAAATGACCCCTTGTTTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGAAGCTAGAGAAAACACTG-----C-AT-T
gi|3510 : ATTAAGTT----TAAAACTAGTC-AATTGATGACCCC--AGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAACTGAAGCTGGAGAAAACACTG-----
gi|3511 : ATTTAATT----TAAAACTAGTA-AACTGAT------------TCTGAAAATTACCCTGAGATTTTTAGTCAGTGGATCATCAATGACCC--CC-AAAAATTGGAGCTGGATAAAACACTG-----
gi|3512 : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CACATTTTGAAAATGACCCCCAGATTTTTAGTGAGTGGGTCATCAATGACCC--CTAAAAAATTGGAGCTGGAGAAAACACTG-----
gi|3513 : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGA-CC--CTAAAATATTGGAGCTGGAGAAAACACTG-----
gi|3514 : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTAAGTCAGTGGGTCATCAATGACCC--CCGAAAAATTTGAGCTGGAGAAAACACTG-----
gi|3515 : ATTAAGTT----TAAAACTAGTC-AATTGATGACCCC-AAGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CAAAAAAATTTAAGCTGGAGAAAACACTG-----TATT-TGA--TAT----A-----AATTA-T-----CCTTAA
gi|3516 : ATTAAGTT----TAAAACTAGTCGAACTGATGACCCC----------------------AGATTTTGAGTCAATGGATCATCAATGTCCC--AAAAAAAATTGGAGCTGGAGAAAACACTGAAA--C-TG-GA---TAT----AT-T---TTTATG-----CC
gi|3517 : ATTAAGTT----TAAAACTAGTC-AACTGATAACCCC-CAGATTTTGAAAATGACCCCCAGATTTAAAGTCAATGGGTCATCAATGACCC--CAAAAAAATTGGAGCTGGAGAAAACACTG-----
gi|3518 : ATTAAGTT----TAAAACTACTC-AACTGATGACCTC-CAGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTTGGTCATCAATGACCT--CCAAAAAATTGGAGCTGGAGAAAATACTG-----A-TC-TA
gi|3519 : ATTAAGTT----TAAAACTGGTC-AACTGATAACCCC-CAGACTTTGAAAATGACCCCGAAATTTTGGGTCAGTGGGTCATCATTGACCC--CCAAAAAAGTGGGGCTGGATAAAACACTG-----T-TTATAC---AT----AT-T-
gi|3520 : ATTTAGTT----TAAAACTAGTC-AACTGATGACCCC--AGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTAGGTCATTAATGA-CC--CCAAATAATTGGGGCTGGAGAAAACACTG-----T-TA-TAG--T-T----AT-T-
gi|3521 : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CATATTTTGAAAATGAACCCCAGATTTTAAGTCAGTTGGTCATCAATGACCCCTCCGATAAATTGGAGCTGGAGAAAACACTG-----------AC--TATTTGAGT-TACATTTA-
gi|3522 : ATTAAGTT----TAA-----GTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGAACC--CCAAAACATTGGAGCTGGAGAAAACACTG--------G-TAC--CAT----GTGT-AATCTA-AGTCATCCCCAA--TAT-----TTTTTGT---------------
gi|3523 : ATTTAGTT----TAAAACTAGTC-AACTGATGACCCC-CAAATTTTGAAAATGACCCCCAGATTTTTAGCCAGTGGGTCATCAGTGACCC--CCAAAAAAATGGGGCTGGAGAAAATGCTG-----C-t
gi|3524 : ATTTAGTT----TAAAACTAGTC-AACTGAAGACCCC-CAGATTTTGAAAATGATCCCCAGATTTTTAGTCAGTGGATCATTAATGACCC--CCAAAAAATTTGGGCTGGAGAAAACACT
gi|3525 : ATTAAGTT----TAAAACTAGTC-AACTGATGACCC---AGATTTTGAAAATGACCCCCAGATTTTTAGTGAG-------------ACCC--CTCAAAAATTGGAGCTGGAGAAAACACTGAATGAC-TT-GAT--TAC----AT-
gi|3526 : TTAAGTT----TAAAACTAGTC-AACTGATGACCCAACAGATTTTGAAAATGACCCTCAGATTTTAAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTTGAGCTGGAGAAAACACTG-----A-TT-GTC--TAT----A
gi|3527 : TTAAGTTGATTTAAAACTAGTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTT--TCAGTGGGTCATTAATGAACC--CCAAAAAATTGGAGCTGGAGAAAACACTG-----A-T----G--TAT----AT-T-TA
gi|3528 : AAAATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTAGAGCTGGAGAAAACACTG-------TT-TCC--CA--------------TG-G-----C--CAATTTAA-----TT
gi|3529 : tcATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CAAAAAAATTGAACCTGGAGAAAACACTG-----g
gi|3530 : TTTTTCTGACATACTGTCTTAAAATATTGTATCAAAGTTTATAAACTATTCTCTAGATTGAATAC--------TT--ATCATCAACTGTAAGCAGTCATATAAAGTGAACAATTTGCTAATACATGTA
blockSeqs : GATT G T AC CT AATGAC A TA TTGA G AC T GTCAT TTTTC AATTTATAATATAGC TT T . T
blockSeqs : . . T C . AAAC . . G . C . . . . TT T . T
blockSeqs : . . T C . TA . . . . C . . . . TG C . A
blockSeqs : . . T A . C . . . . C . . . . TT T . A
blockSeqs : . . T C . C . . . . C . . . . . . . A
blockSeqs : . . T C . C . . . . T . . . . . . . A
blockSeqs : . . T C . C . . . . A . . .
blockSeqs : . . T C . C . . . . T . .
blockSeqs : . . T C . C . . . . . . .
blockSeqs : . . C C . C . . . . . .
blockSeqs : . . C C . A . . . . .
blockSeqs : . . C C . T . . . .
blockSeqs : . . C C . T . . . .
blockSeqs : . . T C . C . . . .
blockSeqs : . . C C . A . . . .
blockSeqs : . . C A . A . . .
blockSeqs : . . C C . . . .
blockSeqs : . . C C . . .
blockSeqs : . . C C . . .
blockSeqs : . . C C . .
blockSeqs : . . C C . .
blockSeqs : . . C C .
blockSeqs : . . C C .
blockSeqs : . . C C .
blockSeqs : . . C . .
blockSeqs : . . C . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : .
blockSeqs : .
blockSeqCons : C* TT **
originalCons : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGGAGCTGGAGAAAACACTG-----C-TT-TAC--TAT----AT-T-CATTTA-G-----CCTCAATTTAA-----TTTTTGT---------------GATTTTTTTCTGGCATACTGTCTTAAAATGTTGTATCAAAGTTTATAAACTATTCTCTAGATTGAATGCTTAATAAGTT--ATCATCAACTGTAAACAGTCATATAAAGTGNACAATTTGCTAATACATGTA
finalCons : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCCC-AGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGGAGCTGGAGAAAACACTG-----C-TT-TAC--TAT----AT-T-CATTTA-G-----CCTCAATTTAA-----TTTTTGT---------------GATTTTTTTCTGGCATACTGTCTTAAAATGTTGTATCAAAGTTTATAAACTATTCTCTAGATTGAATGCTTAATAAGTT--ATCATCAACTGTAAACAGTCATATAAAGTGNACAATTTGCTAATACATGTA
Alignments
lowQualScore : 1111111 11111 11111 333333333333333 11
lowQualScore : 2222 1 4 11 11 3333333 2 33 7777 2 55 3 00000 22222 555555555555555 66 7 77 1
lowQualScore : .... . . .. .. ....... . .. .... . .. . ..... ..... ............... .. . .. .
lowQualScore : 7777 2 4 44 66 9999999 0 11 4444 5 88 6 00000 55555 777777777777777 77 1 99 0
consensus : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGGAGCTGGAGAAAACACTG-----C-TT-TAC--TAT----AT-T-CATTTA-G-----CCTCAATTTAA-----TTTTTGT---------------GATTTTTTTCTGGCATACTGTCTTAAAATGTTGTATCAAAGTTTATAAACTATTCTCTAGATTGAATGCTTAATAAGTT--ATCATCAACTGTAAACAGTCATATAAAGTGNACAATTTGCTAATACATGTA
Reference ( family-578 ) : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGGAGCTGGAGAAAACACTG-----C-TT-TAC--TAT----AT-T-CATTTA-G-----CCTCAATTTAA-----TTTTTGT---------------GATTTTTTTCTGGCATACTGTCTTAAAATGTTGTATCAAAGTTTATAAACTATTCTCTAGATTGAATGCTTAATAAGTT--ATCATCAACTGTAAACAGTCATATAAAGTGNACAATTTGCTAATACATGTA
gi|3496 : ATTAAGTT----TAAAACTAGTC-AA-------------------TGA---TGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAA-TTGGAGCTGGATAAAACACTG-----C-TT-TAC--TAT----AT-T-CATTTA-G-----CCTCAATTTAA-----TTTTTGT---------------GATTTT--TCTGGCATACTGTCTTAAAATGTTGTATCAAAGTTTGTAAACTATTCTCTAGATTGAATGCTTAATAAGTTAAATTATCAACTGTAAACAGTCATATAAAGTGTACAATTTGCTAATACATGTA
gi|3497 : ATTAAGTT----TAAAACTAGTC-AA-------------------TGA---TGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAA-TTGGAGCTGGATAAAACACTG-----C-TT-TGC--TAT----AT-T-CATTTA-G-----CCTCAATTTAA-----TTTTTAT---------------GATTTT--TCTGGCATACTGTCTTAGAATGTTGTATCAAAGTTTGTAAACTATTCTCTAGATTGAATGCTTAATAAGTT--ATTATCAACTGTAAACAGTCATATAAAGTGTACAATTTGCTAACACATGTA
gi|3498 : ATTAAGTT----TAAAACTAGTC-AA-------------------TGG---TGACCCCCAGATTTTCAGTCAGTGGGTCATCAATGACCC--CCAAATA-TTGGAGCTGGATAAAACACTG-----C-TT-TAC--TAT----AT-T-CATTTA-G-----TCTCAATTTAA-----TTTTTGT---------------GATTTT--TCTGGCATATTGTCTTAAAATGTTGTATCCAAGTTTATAAACTATTCTCTAGATTGAATGCTTAATAAGTT--ATCATCAACTGTAAACAGTCATATAAAGTGTACAATTTGCTAATACATGTA
gi|3499 : ATTAAGTT----TAAAACTAGTC-AA-TGATGACCCC-CAGATTTTGAAAATAACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAA-ATTGGAGCTGGATAAAACACTG-----C-TT-TAC--TAT----AT-C-CATTTA-G-----CCTCAATTTAA-----TTTTTGT---------------GATTTTTTTCTGACATACTGTCTTAAAATGTTGTATCAAAGTTTATAAACTATTCTCTAGATTGAATGCCTAATAAGTT--ATCATCAGCTGTAAACAGTCGTATAAAGTGAACAATTTGCTAATACATGTA
gi|3500 : ATTAATTT----TAAAACTAGTC-AA-TGATGACCAC-CAGATTTTGAAAATGACCCCCAGATTTTT-----------------TGACCC--CCGAAAA-TTGGAGTTGGATAAAACATAG-----C-TT-TAC--TAT----AT-T-CATTTA-G-----CCTCAATTTAA-----TTCTTGT---------------GATTTTTT-CTGACATACTGTTTTAAAATGTTGTATCAAAGTTTATAAACTATTCTCTAGATTCAATGCTTAATAAGTT--ATCAGCAACTGTAAACAGTCATATAAAGTGAACAATTTGCTAATACATGTA
gi|3501 : ATTAAGTT----TAAAACTACTC-AA-TGATGACACC-AAGATTTCGAAAATGACCCCGAGATTTTTAGTCAGTGGGTCACCAATGA-CC--CCATAAATTTGAAGCTGGATAAAACACTG-----C-TT-TACTATAT----AT-T-TATTCA-G-----CCTCAATTTAATTTTCTTTTTGTAATTTATAATATAGCGATTTTTGTCTGACATACTGTCTTAAAATGTTGTATTAAATTTTATAAACTATTCTCTAGATTGAATTC--------TT--ATCATCAACTGTAAACAGTCAAATAAAGTGAACAATTTGCTAATACATGTA
gi|3502 : ATTAAGTT----TAAAACTAGTC-AATTGATGACCCC-CAGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGAAGCTGGAGAAAACACTG-----C-
gi|3503 : ATTAAGTT----TAAAACTAGTC-AATTGATGACCCC-CAGATTTTGAAAATGACCCCTAGATTTTTAGTCAATGGGTCATCAATGACCC--CCCAAAAATTGAAGCTGGAGAAAACACTG--------T-CAC--TATG---AT-T-
gi|3504 : ATTAAGTT----TAAAACTAGTC-AATT-ATGACCGC-CAGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGAAGCTGGAGAAAACACTG-----
gi|3505 : ATTAAGTT----TAAAACTAGTC-AATTGATGACCTT-CAGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCCAAAAATTGAAGCTGGAGAAAACACTG-----
gi|3506 : ATTAAGTT----TAAAACCAGTC-AATTGATGACCCC-CAGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CTAAAAAATTGGAGCTGGAGAAAACACTG-----
gi|3507 : ATCAAGTT----TAAAACTAGTC-AATTGATGACCCC-CAGATTTTGAAAATGACCCTTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGAAGCTGGAGAAAACACTG-----
gi|3508 : ATTAAATT----TAAAACTAGTC-AATTGATGACCCC-CAGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGAAGCTGAAGAAAACACTG--------T-TAC--T
gi|3509 : ATTAAGTT----TAAAACTAGTC-AGTTGATGACCCC-CAGATTTTGAAAATGACCCCTTGTTTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTGAAGCTAGAGAAAACACTG-----C-AT-T
gi|3510 : ATTAAGTT----TAAAACTAGTC-AATTGATGACCCC--AGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAACTGAAGCTGGAGAAAACACTG-----
gi|3511 : ATTTAATT----TAAAACTAGTA-AACTGAT------------TCTGAAAATTACCCTGAGATTTTTAGTCAGTGGATCATCAATGACCC--CC-AAAAATTGGAGCTGGATAAAACACTG-----
gi|3512 : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CACATTTTGAAAATGACCCCCAGATTTTTAGTGAGTGGGTCATCAATGACCC--CTAAAAAATTGGAGCTGGAGAAAACACTG-----
gi|3513 : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGA-CC--CTAAAATATTGGAGCTGGAGAAAACACTG-----
gi|3514 : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTAAGTCAGTGGGTCATCAATGACCC--CCGAAAAATTTGAGCTGGAGAAAACACTG-----
gi|3515 : ATTAAGTT----TAAAACTAGTC-AATTGATGACCCC-AAGATTTTGAAAATGACCCCTAGATTTTTAGTCAGTGGGTCATCAATGACCC--CAAAAAAATTTAAGCTGGAGAAAACACTG-----TATT-TGA--TAT----A-----AATTA-T-----CCTTAA
gi|3516 : ATTAAGTT----TAAAACTAGTCGAACTGATGACCCC----------------------AGATTTTGAGTCAATGGATCATCAATGTCCC--AAAAAAAATTGGAGCTGGAGAAAACACTGAAA--C-TG-GA---TAT----AT-T---TTTATG-----CC
gi|3517 : ATTAAGTT----TAAAACTAGTC-AACTGATAACCCC-CAGATTTTGAAAATGACCCCCAGATTTAAAGTCAATGGGTCATCAATGACCC--CAAAAAAATTGGAGCTGGAGAAAACACTG-----
gi|3518 : ATTAAGTT----TAAAACTACTC-AACTGATGACCTC-CAGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTTGGTCATCAATGACCT--CCAAAAAATTGGAGCTGGAGAAAATACTG-----A-TC-TA
gi|3519 : ATTAAGTT----TAAAACTGGTC-AACTGATAACCCC-CAGACTTTGAAAATGACCCCGAAATTTTGGGTCAGTGGGTCATCATTGACCC--CCAAAAAAGTGGGGCTGGATAAAACACTG-----T-TTATAC---AT----AT-T-
gi|3520 : ATTTAGTT----TAAAACTAGTC-AACTGATGACCCC--AGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTAGGTCATTAATGA-CC--CCAAATAATTGGGGCTGGAGAAAACACTG-----T-TA-TAG--T-T----AT-T-
gi|3521 : ATTAAGTT----TAAAACTAGTC-AACTGATGACCCC-CATATTTTGAAAATGAACCCCAGATTTTAAGTCAGTTGGTCATCAATGACCCCTCCGATAAATTGGAGCTGGAGAAAACACTG-----------AC--TATTTGAGT-TACATTTA-
gi|3522 : ATTAAGTT----TAA-----GTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGAACC--CCAAAACATTGGAGCTGGAGAAAACACTG--------G-TAC--CAT----GTGT-AATCTA-AGTCATCCCCAA--TAT-----TTTTTGT---------------
gi|3523 : ATTTAGTT----TAAAACTAGTC-AACTGATGACCCC-CAAATTTTGAAAATGACCCCCAGATTTTTAGCCAGTGGGTCATCAGTGACCC--CCAAAAAAATGGGGCTGGAGAAAATGCTG-----C-t
gi|3524 : ATTTAGTT----TAAAACTAGTC-AACTGAAGACCCC-CAGATTTTGAAAATGATCCCCAGATTTTTAGTCAGTGGATCATTAATGACCC--CCAAAAAATTTGGGCTGGAGAAAACACT
gi|3525 : ATTAAGTT----TAAAACTAGTC-AACTGATGACCC---AGATTTTGAAAATGACCCCCAGATTTTTAGTGAG-------------ACCC--CTCAAAAATTGGAGCTGGAGAAAACACTGAATGAC-TT-GAT--TAC----AT-
gi|3526 : TTAAGTT----TAAAACTAGTC-AACTGATGACCCAACAGATTTTGAAAATGACCCTCAGATTTTAAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTTGAGCTGGAGAAAACACTG-----A-TT-GTC--TAT----A
gi|3527 : TTAAGTTGATTTAAAACTAGTC-AACTGATGACCCC-CAGATTTTGAAAATGACCCCCAGATTTTT--TCAGTGGGTCATTAATGAACC--CCAAAAAATTGGAGCTGGAGAAAACACTG-----A-T----G--TAT----AT-T-TA
gi|3528 : AAAATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CCAAAAAATTAGAGCTGGAGAAAACACTG-------TT-TCC--CA--------------TG-G-----C--CAATTTAA-----TT
gi|3529 : tcATGACCCCCAGATTTTTAGTCAGTGGGTCATCAATGACCC--CAAAAAAATTGAACCTGGAGAAAACACTG-----g
gi|3530 : TTTTTCTGACATACTGTCTTAAAATATTGTATCAAAGTTTATAAACTATTCTCTAGATTGAATAC--------TT--ATCATCAACTGTAAGCAGTCATATAAAGTGAACAATTTGCTAATACATGTA