lowQualScore : 3333333333333333333333333333 666666666666666666666666666666666666666666666666666666 11 111
lowQualScore : 1111111111111111111111111111 0 2222 44444 999999999999999999999999999999999999999999999999999999 111 33 22 666 777 33 1
lowQualScore : ............................ . .... ..... ...................................................... ... .. .. ... ... .. .
lowQualScore : 9999999999999999999999999999 8 2222 99999 777777777777777777777777777777777777777777777777777777 666 88 66 111 777 11 1
consensus : ATCGAGGGGATTTTGACT----A-CC---CTATCA----TTTNT--GCCAT-GGGGATTTTGACTAC----C-----CT----------A------T------C-----A--------A---------GGGGATTTTGA---CTACCCTG--T---CATTTTT---G--CCAT-GGGGATTTTGA
Reference ( gi|144300 ) : ATCAAGGGGATTTTGACT----T-TC---CTATTA----TTGAT--GCCAT-GGGGATTTTGACTAC----C-----C-----------A------T------C-----A--------A---------GGATATTTTGA---CTACACTA--T---CATTTTT---G--CCAT-GGGGATTTTGA
gi|144324 : ATCATGGAGATTTTGACC----A-CC---CTGTCA----TTTTT--GCCAT-GGGGATTTTGA
gi|144312 : aggggattcttactacccATCAAGGGGATTTTGACT----A-CC---CTATCA----TTTTT--GCCAT-GGGGATTTTGACTAC----C-----T-----------A------T------C-----A--------A---------GTGGATTTTGA---
gi|144315 : ATCAAGGGGATTTTGACC----A-CC---CTGTTA----ATTCT--GTCAT-GGGGATTTTGACTAC----C-----C-----------A------T------C-----A--------A---------GGGGATTTTGA---
gi|144317 : ATCAAGGGGATTTTGACC----A-CC---CTGTTA----ATTCT--GTCAT-GGGGATTTTGA
gi|144301 : atcaaggggattttgactacccATCAAGGATATTTTGACT----A-CA---CTATCA----TTTTT--GCCAT-GGGGATTTTGACTAC----C-----C-----------A------T------C-----A--------A---------GGGGATTTTGA---
gi|144302 : ATCAAGGGGATTTTGACT----T-TC---CTATTA----TTGAT--GCCAT-GGGGATTTTGA
gi|144322 : atcatggagattttgagtacccATTGAGAGGATTTTGATT----A-CC---TTATCA----TTTTT--GCCAT-AGGGATTTTAA
gi|144308 : attaaggggattttgactacccATCATGGGGATTTT-ACT----T-CC---CTATCA----TTTTT--GCCAT-GGGGATTATGACAAC----C-----C-----------A------T------C-----A--------A---------GGGGATTTTGA---
gi|144305 : ATCATGGGGATTTT-ACT----T-CC---CTATCA----TTTTT--GCCAT-GGGGATTATGACAAC----C-----C-----------A------T------C-----A--------A---------GGGGATTTTGA---
gi|144307 : ATCATGGGGATTTT-ACT----T-CC---CTATCA----TTTTT--GCCAT-GGGGATTATGA
gi|144304 : atcatggggattttgagaacccATCATGGGGATTTT-ACT----T-CC---CTATCA----TTTTT--GCCAT-GGGGATTATGA
gi|144319 : atcatggggattttgagaacccATCATGGAGATTTTGACC----A-CC---CTGTCA----TTTTT--GCCAT-GGGGATTTTGACTA-----C-----C-----------A------T------C-----A--------T---------GG--------------------------CATTTTT---G--CCAT-GGGGATTTT
gi|144310 : ATCATGGGGATTTTGAC-----T-AC---CCAT---------------CAA-GGGGATTTTAACTAC----C-----C-----------C------T------C---------------------------TATTTTGA---CCA
gi|144323 : ATTGAGAGGATTTTGATT----A-CC---TTATCA----TTTTT--GCCAT-AGGGATTTTAACT--------------------------------------------------------------------TTTTGA---CTTCTCTG--C---CATTTTTGA-G--CCAT-GAGAATTTTagggaattttga
gi|144299 : ATCAAGGGGATTTTGACT----A-CCCCTCTATT-----TTGA----CCAA-GGGGATTTTGACCAC----C-----CTGTTAATTCT-G------T------C-----G--------A---------GGGGATTTTGA---
gi|144314 : ATCAGGGGGATTTTGA----------------TTA----C--AC--ATCAA-GGGGATTTTAACTAC----C-----C-----------C------T------C---------------------------TATTTTGA---CCACCTTT--T---TAATTCT---A--TCGA-GGGGATTTTGA
gi|144316 : ATCAAGGGGATTTTGACC----A-CC---CTGTTA----ATTCT--GTCAT-GGGGATTTTGACTA
gi|144331 : ATCGAGGGGATTTTGACT----A-CCAAGTCATTT----TTTA---GCCAT-GGGGATTTTGAtatatatattta
gi|144297 : attttgaccacctttttaattctTCAAGGGGATTTTGACTAC--TATG---TCATTT----TTGA---GCCAT-GGGGATTTTGA
gi|144309 : atcaaggggattttgaccaccctgttaattctgTCGAGGGGATTTTGACTACC-T-TG---TCATTT----TTGA---GCCAT-GGGGATTTTGA
gi|144298 : accaagggaattttgaccaccctgttaattctgTCGAGGGGATTTTGACT----A-CC---TTGTCAGTTTTCGA---GCCAT-GGGGATTTTGA
gi|144311 : accaaggggattttgaccaccctgttaattctgTCGAAGGGATTTTGACT----A-CC---ATGTCA----TTTTTTAGCAAT-GGGGATTTTGA
gi|144306 : accaaggggattttgaccaccctgttaattctgTCAAGGGAATTTTGACT----A-CC---ATGTCATT--TTCAA--GCTGT-GGGGATTTTGA
gi|144303 : atcaaggggattttgaccaccctgttaattctgTCAAGGGAATTTTGACT----A-CC---ATGTCATT--TTCAA--GCTGT-GGGGATTTTGA
gi|144328 : atcaaggggattttgaccaccctgttaattctgTCGAGGAGATTTTGACC----A-CTAGGCCATTT----TTGA---GCCGT-GGGGATTTTAA
gi|144327 : gggattttgaacaccctgttaatactgTCGAGGGGATTTTGACTAA--TATG---CCATTT----TTGA---GCCATGGGGGATTTTGA
gi|144318 : gggattttgaccacactgccagttatgTTAAGGCGATTTTGACTACTAT-GC---CTGTTT----TTGA---GCCAT-GGGGATTTTGA
gi|144330 : atcaagaggatttgactaccttgtacattctgCATGGGGATTTTGAGTACA-T-GC---C-ATTT----TTGA---ACCAT-GGGGATTTTGA
gi|144325 : ggattttgagtactctaacattttagcGGGTATTTTGACT----A-CC---CTGTAA----ATTCT--ACTGT-GGGTATTTTGAATAC----C-----CT----------G------T------A-----A--------ATTCTACTGTGGGTATTTTGA---
gi|144321 : GGATTTTGAGT----A-CT---CTAACA----TTTTA--GCCAT-GGGGATTTTGA
gi|144309 : accatggggattttgaataccctaacattttagccatgtCCAA-GGGAATTTTGACCAC----C-----CTGTTAATTCT-G------T------C-----G--------A---------GGGGATTTTGA---CTACCTTG--T---CATTTTTGA-G--CCAT-GGGGATTTTGA
gi|144298 : aCCAA-GGGGATTTTGACCAC----C-----CTGTTAATTCT-G------T------C-----G--------A---------GGGGATTTTGA---CTACCTTG--T---CAGTTTTCGAG--CCAT-GGGGATTTTGA
gi|144321 : aCCAT-GGGGATTTTGAATAC----C-----CTAAC-------A------TTTTAGCC-----A--------T---------GTGGATTTTGA---GTACTCTA--A---CATTTTA---G--CCAT-GGGGATTTTGA
gi|144311 : aCCAA-GGGGATTTTGACCAC----C-----CTGTTAATTCT-G------T------C-----G--------A---------AGGGATTTTGA---CTACCATG--T---CATTTTTTA-G--CAAT-GGGGATTTTGA
gi|144312 : aCAA-GGGGATTTTGACTAC----C-----CT----------A------T------C-----ATTTTTGCCAT--------GGGGATTTTGA---CTAC-CTA--T---CA-------------A--GTGGATTTTGA
gi|144315 : atCAA-GGGGATTTTGACCAC----C-----CTGTTAATTCT-G------T------C-----A--------T---------GGGGATTTTGA---CTAC-CCA--T---CA-------------A--GGGGATTTTGA
gi|144317 : atCAA-GGGGATTTTGACTAC----C-----C-----------A------T------C-----A--------A---------GGGGATTTTGA---CCACCCTG--T---TAATTCT---G--TCAT-GGGGATTTTGA
gi|144302 : atCAT-GGAGATTTTGAGTAC----C-----C-----------A------T------C-----A--------A---------GGGGATTTTGA---CTTTCCTA--T---TATTGAT---G--CCAT-GGGGATTTTGA
gi|144307 : atCAT-GGGGATTTTGAGAAC----C-----C-----------A------T------C-----A--------T---------GGGGATTTT-A---CTTCCCTA--T---CATTTTT---G--CCAT-GGGGATTATGA
gi|144304 : atCAT-GGGGATTTTGAGAAC----C-----C-----------A------T------C-----A--------T---------GGGGATTTT-A---CTTCCCTA--T---CATTTTT---G--CCAT-GGGGATTATGA
gi|144310 : atCAT-GGGGATTTTGACTAC----C-----C-----------A------T------C-----A--------A---------GGGGATTTTAA---CTACCCCT--C---TATTTTG---A--CCAA-GGGAATTTTGA
gi|144297 : atCAA-GGGGATTTTGACCAC----C-----CTGTTAATTCT-G------T------C-----A--------A---------GGGGATTTTGA---CTACTATG--T---CATTTTTGA-G--CCAT-GGGGATTTTGA
gi|144306 : atCAA-GGGGATTTTGACCAC----C-----CTGTTAATTCT-G------T------C-----A--------A---------GGGAATTTTGA---CTACCATG--T---CATTTTCAA-G--CTGT-GGGGATTTTGA
gi|144303 : atCAA-GGGGATTTTGACCAC----C-----CTGTTAATTCT-G------T------C-----A--------A---------GGGAATTTTGA---CTACCATG--T---CATTTTCAA-G--CTGT-GGGGATTTTGA
gi|144299 : atCAA-GGGGATTTTGACTAC----C-----CCTCTATTTTG-A------C------C-----A--------A---------GGGGATTTTGA---CCACCCTG--T---TAATTCT---G--TCGA-GGGGATTTTGA
gi|144316 : atCAA-GGGGATTTTGACCAC----C-----CTGTTAATTCT-G------T------C-----A--------T---------GGGGATTTTGA---CTATA-TA--TA--TATTT
gi|144318 : atCAA-GAGGATTT-GACTAC----CTTGTAC-----------A------T------TCTGTTA--------A---------GGCGATTTTGA---CTAC--TA--TGCCTGTTTTT---GAGCCAT-GGGGATTTTGAa
gi|144320 : atCGT-GGGGATTTTGAATAC----CCTGA-C-----------A------TTTTAGCC-----A--------T---------GGGGATTTTGA---GT--ATTA--TGC-CATTTTTTA-A--CCAT-TGGGATTTTGA
gi|144324 : at-GGGGATTCTTACTAC----C-----C-----------A------T------C-----A--------T---------GGAGATTTTGA---CCACCCTG--T---CATTTTT---G--CCAT-GGGGATTTTGA
gi|144322 : a-GGGGATTTTGACTAC----C-----C-----------A------T------T-----G--------A---------GAGGATTTTGA---TTACCTTA--T---CATTTTT---G--CCAT-AGGGATTTTAA
gi|144325 : attaa-GGGTATTTTGACTAC----C-----CT----------G------T------A-----A--------ATTCTACTGTGGGTATTTTGA---ATACCCTG--T---AAATTCT---A--CTGT-GGGTATTTTGA
gi|144326 : -GGGTATTTTGAATAC----C-----CT----------G------T------A-----A--------ATTCTACTGTGGGTATTTTGA---ATACCCTG--T---AAATTCT---A--CTGT-GGGTATTTTGA
gi|144328 : GGGATTTTGAACAC----C-----CTGTTAATACT-G------T------C-----G--------A---------GGAGATTTTGA---C--CACTAGGC---CATTTTTGA-G--CCGT-GGGGATTTTAA
gi|144327 : GGGATTTTGACCACACTGC-----C-----------AGTTATGT------C-----G--------A---------GGGGATTTTGA---CTA-A-TA--TGC-CATTTTTGA-G--CCATGGGGGATTTTGA
gi|144330 : GGATTTTGAGTAC----T-----CTAAC-------A------TTTTAGCC-----A--------T---------GGGGATTTTGA---GTACA-TG--C---CATTTTT---GAACCAT-GGGGATTTTGA
gi|144329 : GGATTTTAACCAC----C-----CTGTTAAATTCTG------T------T-----G--------A---------GGGGATTTTGATAACTAAACTA--T-----TTTTA---G--TCAT-GTGGATTTTG
gi|144331 : ATTTTGACCAC----C-----TTTTTAATTCT-A------T------C-----G--------A---------GGGGATTTTGA---CTAC-CAAG-T---CATTTTTTA-G--CCAT-GGGGATTTTGA
gi|144312 : -----------A------T------C-----A--------A---------GGGGATTTTGA---CTACCCTA--T---CATTTTT---G--CCAT-GGGGATTTTGA
gi|144315 : -----------A------T------C-----A--------A---------GGGGATTTTGA---CCACCCTG--T---TAATTCT---G--TCAT-GGGGATTTTGActacctatcaagtggattttga
gi|144301 : -----------A------T------C-----A--------A---------GGATATTTTGA---CTACACTA--T---CATTTTT---G--CCAT-GGGGATTTTGActacccatcaaggggattttga
gi|144308 : -----------A------T------C-----A--------T---------GGGGATTTT-A---CTTCCCTA--T---CATTTTT---G--CCAT-GGGGATTATGActacccatcaaggggattttga
gi|144305 : -----------A------T------C-----A--------T---------GGGGATTTT-A---CTTCCCTA--T---CATTTTT---G--CCAT-GGGGATTATGAcaacccatcaaggggattttga
gi|144316 : -----------A------T------C-----A--------A---------GGGGATTTTGA---CCACCCTG--T---TAATTCT---G--TCAT-GGGGATTTTGAcaacccatcaaggggattttga
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|144313 ): ATCAAGTGGATTTTGACCACCCTGTTAATTCTGTNNNNNNNNNNCTG
Alignments
lowQualScore : 5555555555555555555555555555555555555555555555555 222
lowQualScore : 44 2 1 2222 5555555555555555555555555555555555555555555555555 2222 1 222 1 1 333 11 1
lowQualScore : .. . . .... ................................................. .... . ... . . ... .. .
lowQualScore : 22 2 9 6666 4444444444444444444444444444444444444444444444444 4444 1 000 3 3 888 88 4
consensus : ATCAAGGGGATTTTGACTACCCTATCATTTTTGCCATGGGGATTTTGACTAC----C---------C-----TAT---------CA----------A---------G----G-GGATTTTG---ACTACCCTGTC-ATTTTT-A-G--CCAT-GGGGATTTTGA
Reference ( family-574 ) : ATCGAGGGGATTTTGACTACCCTATCATTTNTGCCATGGGGATTTTGACTAC----C---------C-----TAT---------CA----------A---------G----G-GGATTTTG---ACTACCCTGTC-ATTTTT---G--CCAT-GGGGATTTTGA
gi|144297 : CAAGGGGATTTTGACCAC----C---------C-----TGTTAATTCTGTCA----------A---------G----G-GGATTTTG---ACTACTATGTC-ATTTTTGA-G--CCAT-GGGGATTTTGA
gi|144298 : atCCAAGGGGATTTTGACCAC----C---------C-----TGTTAATTCTGTCG----------A---------G----G-GGATTTTG---ACTACCTTGTC-AGTTTTCGAG--CCAT-GGGGATTTTGA
gi|144299 : aCAAGGGGATTTTGACTAC----C---------CCTC--TATTTTGAC---CA----------A---------G----G-GGATTTTG---ACCACCCTGTT-AATTCT---G--TCGA-GGGGATTTTGA
gi|144300 : atATCAAGGGGATTTTGACTTTCCTATTATTGATGCCATGGGGATTTTGACTAC----C---------C------AT---------CA----------A---------G----G-ATATTTTG---ACTACACTATC-ATTTTT---G--CCAT-GGGGATTTTGA
gi|144301 : ATCAAGGATATTTTGACTACACTATCATTTTTGCCATGGGGATTTTGACTAC----C---------C------AT---------CA----------A---------G----G-GGATTTTG---A
gi|144302 : CATGGAGATTTTGAGTAC----C---------C------AT---------CA----------A---------G----G-GGATTTTG---ACTTTCCTATT-ATTGAT---G--CCAT-GGGGATTTTGA
gi|144303 : atCAAGGGGATTTTGACCAC----C---------C-----TGTTAATTCTGTCA----------A---------G----G-GAATTTTG---ACTACCATGTC-ATTTTCAA-G--CTGT-GGGGATTTTGA
gi|144304 : atCATGGGGATTTTGAGAAC----C---------C------AT---------CA----------T---------G----G-GGATTTT----ACTTCCCTATC-ATTTTT---G--CCAT-GGGGATTATGA
gi|144305 : atATCATGGGGATTTT-ACTTCCCTATCATTTTTGCCATGGGGATTATGACAAC----C---------C------AT---------CA----------A---------G----G-GGATTTTG---A
gi|144306 : CAAGGGGATTTTGACCAC----C---------C-----TGTTAATTCTGTCA----------A---------G----G-GAATTTTG---ACTACCATGTC-ATTTTCAA-G--CTGT-GGGGATTTTGA
gi|144307 : atCATGGGGATTTTGAGAAC----C---------C------AT---------CA----------T---------G----G-GGATTTT----ACTTCCCTATC-ATTTTT---G--CCAT-GGGGATTATGA
gi|144308 : atATCATGGGGATTTT-ACTTCCCTATCATTTTTGCCATGGGGATTATGACAAC----C---------C------AT---------CA----------A---------G----G-GGATTTTG---A
gi|144309 : CCAAGGGAATTTTGACCAC----C---------C-----TGTTAATTCTGTCG----------A---------G----G-GGATTTTG---ACTACCTTGTC-ATTTTTGA-G--CCAT-GGGGATTTTGA
gi|144310 : aCATGGGGATTTTGACTAC----C---------C------AT---------CA----------A---------G----G-GGATTTTA---ACTACCCCTCT-ATTTTG---A--CCAA-GGGAATTTTGA
gi|144311 : atCCAAGGGGATTTTGACCAC----C---------C-----TGTTAATTCTGTCG----------A---------A----G-GGATTTTG---ACTACCATGTC-ATTTTTTA-G--CAAT-GGGGATTTTGA
gi|144312 : aATCAAGGGGATTTTGACTACCCTATCATTTTTGCCATGGGGATTTTGACTA-----C---------C-----TAT---------CA----------A---------G----T-GGATTTTG---A
gi|144313 : AT---------CA----------A---------G----T-GGATTTTG---ACCACCCTGTT-AATTCT---G--
gi|144314 : ATCAGGGGGATTTTGATTACAC-ATCA--------A-GGGGATTTTAACTAC----C---------C-----C-T---------C-----------------------------TATTTTG---ACCACCTTTTT-AATTCT---A--TCGA-GGGGATTTTGAtnnnnnnnnnnctg
gi|144315 : ATCAAGGGGATTTTGACCACCCTGTTAATTCTGTCATGGGGATTTTGACTAC----C---------C------AT---------CA----------A---------G----G-GGATTTTG---A
gi|144316 : ATCAAGGGGATTTTGACCACCCTGTTAATTCTGTCATGGGGATTTTGACTA
gi|144317 : CAAGGGGATTTTGACTAC----C---------C------AT---------CA----------A---------G----G-GGATTTTG---ACCACCCTGTT-AATTCT---G--TCAT-GGGGATTTTGAtatatatattta
gi|144318 : atCAAGAGGATTT-GACTAC----CTTGTACATTC-----TGT---------TA----------A---------G----G-CGATTTTG---ACTACTATGCCTGTTTTTGA-G--CCAT-GGGGATTTTGA
gi|144319 : atATCATGGAGATTTTGACCACCCTGTCATTTTTGCCATGGGGATTTTGACTAC----C----------------AT---------CA---------------------------------------------TGGC-ATTTTT---G--CCAT-GGGGATTTT
gi|144320 : AT---------CG----------T---------G----G-GGATTTTG---AATACCCTGAC-ATTTTA---G--CCAT-GGGGATTTTGA
gi|144320 : ATCGTGGGGATTTTGAATACCCTGACATTTTAGCCATGGGGATTTTGAGTA---------------T-----TA---------------------------------------------------------TGCC-ATTTTTTA-A--CCAT-TGGGATTTTGAgtattatgccattttttaaccattgggattttga
gi|144321 : CCATGGGGATTTTGAATAC----C---------C-----TAA---------CATTTT------A---------GCCATGTGGATTTTG---AGTACTCTAAC-ATTTTA---G--CCAT-GGGGATTTTGA
gi|144322 : aATTAAGGGGATTTTGACTACCC
gi|144322 : GGGGATTTTGACTAC----C---------C------AT---------TG----------A---------G----A-GGATTTTG---ATTACCTTATC-ATTTTT---G--CCAT-AGGGATTTTAAattgagaggattttgattaccttatcatttttgccatagggattttaa
gi|144323 : attaaATTGAGAGGATTTTGATTACCTTATCATTTTTGCCATAGGGATTTTAACT------------------------------------------------------------------TTTTG---ACTTCTCTGCC-ATTTTTGA-G--CCAT-GAGAATTTT
gi|144324 : GGGGATTCTTACTAC----C---------C------AT---------CA----------T---------G----G-AGATTTTG---ACCACCCTGTC-ATTTTT---G--CCAT-GGGGATTTTGA
gi|144325 : aGGGTATTTTGACTAC----C---------C-----TGT---------AA----------ATTCTACTGTG----G-GTATTTTG---AATACCCTGTA-AATTCT---A--CTGT-GGGTATTTTGA
gi|144326 : GGGTATTTTGAATAC----C---------C-----TGT---------AA----------ATTCTACTGTG----G-GTATTTTG---AATACCCTGTA-AATTCT---A--CTGT-GGGTATTTTGA
gi|144327 : GGGATTTTGACCACACTGC---------CAGTTATGT---------CG----------A---------G----G-GGATTTTG---ACTAATATGCC-ATTTTTGA-G--CCATGGGGGATTTTGA
gi|144328 : GGGATTTTGAACAC----C---------C-----TGTTAATACTGTCG----------A---------G----G-AGATTTTG---ACCACTAGGCC-ATTTTTGA-G--CCGT-GGGGATTTTAA
gi|144329 : GGATTTTAACCAC----C---------C-----TGT---------TAAATTCTGTTGA---------G----G-GGATTTTGATAACTAAACT----ATTTTTA--G--TCAT-GTGGATTTTG
gi|144330 : GGATTTTGAGTACTCTAACATTTTAGCCATGGGGATTTTGAGTA---------------------------------CA---------------------------------------------TGCC-ATTTTT---GAACCAT-GGGGATTTTGA
gi|144331 : ATTTTGACCAC----CTTTTTAATTC-----TAT---------CG----------A---------G----G-GGATTTTG---ACTACCAAGTC-ATTTTTTA-G--CCAT-GGGGATTTTGA
Alignments
lowQualScore : 4444444444444444444444444444444444444444 111
lowQualScore : 5 2 1 0 2222 7777777777777777777777777777777777777777 222 2222 1 2 777 1
lowQualScore : . . . . .... ........................................ ... .... . . ... .
lowQualScore : 6 6 7 4 6666 1111111111111111111111111111111111111111 000 9999 7 8 999 4
consensus : ATCAAGGGGATTTTGACTACCCTGTCATTTTTGCCATGGGGATTTTGACTAC----C---------C-----TAT---------CGA----------GGGGATTTTG---ACTAC----CCTGTCA-TTTTT--AGCCAT-GGGGATTTTGA
Reference ( family-574 ) : ATCAAGGGGATTTTGACTACCCTATCATTTTTGCCATGGGGATTTTGACTAC----C---------C-----TAT---------CAA----------GGGGATTTTG---ACTAC----CCTGTCA-TTTTT--AGCCAT-GGGGATTTTGA
gi|144297 : ATCAAGGGGATTTTGACCACCCTGTTA--------------ATTCTG---------------------------T---------CAA----------GGGGATTTTG---ACTAC----TATGTCA-TTTTTG-AGCCAT-GGGGATTTTGA
gi|144298 : CCAAGGGGATTTTGACCAC----C---------C-----TGTTAATTCTGTCGA----------GGGGATTTTG---ACTAC----CTTGTCA-GTTTTCGAGCCAT-GGGGATTTTGA
gi|144299 : aATCAAGGGGATTTTGACTACCCCTCTATTTTGACCAAGGGGATTTTGACCAC----CCTGTTAATTC-----TGT---------CGA----------GGGGATTTTG---A
gi|144300 : ATCAAGGGGATTTTGACTTTCCTATTATTGATGCCATGGGGATTTTGACTAC----C---------C------AT---------CAA----------GGATATTTTG---ACTAC----ACTATCA-TTTTT---GCCAT-GGGGATTTTGA
gi|144301 : ATCAAGGATATTTTGACTACACTATCATTTTTGCCATGGGGATTTTGACTAC----C---------C------AT---------CAA----------GGGGATTTTG---A
gi|144302 : CATGGAGATTTTGAGTAC----C---------C------AT---------CAA----------GGGGATTTTG---ACTTT----CCTATTA-TTGAT---GCCAT-GGGGATTTTGA
gi|144303 : atATCAAGGGGATTTTGACCACCCTGTTA--------------ATTCTG---------------------------T---------CAA----------GGGAATTTTG---ACTAC----CATGTCA-TTTTCA-AGCTGT-GGGGATTTTGA
gi|144304 : CATGGGGATTTTGAGAAC----C---------C------AT---------CAT----------GGGGATTTT----ACTTC----CCTATCA-TTTTT---GCCAT-GGGGATTATGA
gi|144305 : atATCATGGGGATTTT-ACTTCCCTATCATTTTTGCCATGGGGATTATGACAAC----C---------C------AT---------CAA----------GGGGATTTTG---A
gi|144306 : ATCAAGGGGATTTTGACCACCCTGTTA--------------ATTCTG---------------------------T---------CAA----------GGGAATTTTG---ACTAC----CATGTCA-TTTTCA-AGCTGT-GGGGATTTTGA
gi|144307 : CATGGGGATTTTGAGAAC----C---------C------AT---------CAT----------GGGGATTTT----ACTTC----CCTATCA-TTTTT---GCCAT-GGGGATTATGA
gi|144308 : atATCATGGGGATTTT-ACTTCCCTATCATTTTTGCCATGGGGATTATGACAAC----C---------C------AT---------CAA----------GGGGATTTTG---A
gi|144309 : CCAAGGGAATTTTGACCAC----C---------C-----TGTTAATTCTGTCGA----------GGGGATTTTG---ACTAC----CTTGTCA-TTTTTG-AGCCAT-GGGGATTTTGA
gi|144310 : aCATGGGGATTTTGACTAC----C---------C------AT---------CAA----------GGGGATTTTA---ACTAC----CCCTCTA-TTTTG--A-CCAA-GGGAATTTTGA
gi|144311 : atCCAAGGGGATTTTGACCAC----C---------C-----TGTTAATTCTGTCGA----------AGGGATTTTG---ACTAC----CATGTCATTTTTT--AGCAAT-GGGGATTTTGA
gi|144312 : aATCAAGGGGATTTTGACTACCCTATCATTTTTGCCATGGGGATTTTGACTA-----C---------C-----TAT---------CAA----------GTGGATTTTG---A
gi|144313 : AT---------CAA----------GTGGATTTTG---ACCAC----CCTGTTA-ATTCT--
gi|144314 : ATCAGGGGGATTTTGATTACAC-ATCA--------A-GGGGATTTTAACTAC----C---------C-----C-T---------C---------------TATTTTG---ACCAC----CTTTTTA-ATTCT--ATCGA--GGGGATTTTGAgtnnnnnnnnnnctg
gi|144315 : ATCAAGGGGATTTTGACCACCCTGTTAATTCTGTCATGGGGATTTTGACTAC----C---------C------AT---------CAA----------GGGGATTTTG---A
gi|144316 : ATCAAGGGGATTTTGACCACCCTGTTAATTCTGTCATGGGGATTTTGACTA
gi|144317 : CAAGGGGATTTTGACTAC----C---------C------AT---------CAA----------GGGGATTTTG---ACCAC----CCTGTTA-ATTCT---GTCAT-GGGGATTTTGAtatatatattta
gi|144318 : atCAAGAGGATTT-GACTAC----CTTGTACATTC-----TGT---------TAA----------GGCGATTTTG---ACTACTATGCCTGT---TTTTG--AGCCAT-GGGGATTTTGA
gi|144319 : atATCATGGAGATTTTGACCACCCTGTCATTTTTGCCATGGGGATTTTGACTAC----C----------------AT---------CA-----------------------------------TGGCA-TTTTT---GCCAT-GGGGATTTT
gi|144320 : AT---------CGT----------GGGGATTTTG---AATAC----CCTGACA--TTTT--AGCCAT-GGGGATTTTGA
gi|144320 : ATCGTGGGGATTTTGAATACCCTGACATTTTAGCCATGGGGATTTTGA---------------------------------------------------GTATTATG-------C----CAT-----TTTTT--AACCAT-TGGGATTTTGAgtattatgccattttttaaccattgggattttga
gi|144321 : ACCATGGGGATTTTGAATACCCTAACATTTTAGCCATGTGGATTTTGAGTAC----T---------C-----TAA---------CA------------------------------------------TTTT--AGCCAT-GGGGATTTTGA
gi|144322 : ATTAAGGGGATTTTGACTACCC
gi|144322 : GGGGATTTTGACTAC----C---------C------AT---------TGA----------GAGGATTTTG---ATTAC----CTTATCA-TTTTT---GCCAT-AGGGATTTTAAattgagaggattttgattaccttatcatttttgccatagggattttaa
gi|144323 : attaaATTGAGAGGATTTTGATTACCTTATCATTTTTGCCATAGGGATTTTAACT----------------------------------------------------TTTTG---ACTTC----TCTGCCA-TTTTTG-AGCCAT-GAGAATTTT
gi|144324 : GGGGATTCTTACTAC----C---------C------AT---------CAT----------GGAGATTTTG---ACCAC----CCTGTCA-TTTTT---GCCAT-GGGGATTTTGA
gi|144325 : aGGGTATTTTGACTAC----C---------C-----TGT---------AAATTCTACTGT-GGGTATTTTG---AATAC----CCTGTAA-ATTCT--A-CTGT-GGGTATTTTGA
gi|144326 : GGGTATTTTGAATAC----C---------C-----TGT---------AAATTCTACTGT-GGGTATTTTG---AATAC----CCTGTAA-ATTCT--A-CTGT-GGGTATTTTGA
gi|144327 : GGGATTTTGACCACACTGC---------CAGTTATGT---------CGA----------GGGGATTTTG---ACTAA----TATGCCA-TTTTTG-AGCCATGGGGGATTTTGA
gi|144328 : GGGATTTTGAACAC----C---------C-----TGTTAATACTGTCGA----------GGAGATTTTG---ACCAC----TAGGCCA-TTTTTG-AGCCGT-GGGGATTTTAA
gi|144329 : GGATTTTAACCAC----C---------C-----TGT---------TAAATTCTGTTGAGGGGATTTTGATAACTAA----ACT---A-TTTTT--AGTCAT-GTGGATTTTG
gi|144330 : GGATTTTGAGTACTCTAACATTTTAGCCATGGGGATTTTGAGTAC---------------------AT-----------------------------------------------GCCA-TTTTTG-AACCAT-GGGGATTTTGA
gi|144331 : ATTTTGACCAC----CTTTTTAATTC-----TAT---------CGA----------GGGGATTTTG---ACTAC----CAAGTCATTTTTT--AGCCAT-GGGGATTTTGA
Alignments
lowQualScore : 5555555555555555555555555555555555555555555555555 222
lowQualScore : 1 4 33 0 0 2222 1111111111111111111111111111111111111111111111111 222 3 3 000 1
lowQualScore : . . .. . . .... ................................................. ... . . ... .
lowQualScore : 9 2 11 1 4 6666 3333333333333333333333333333333333333333333333333 111 0 1 555 5
consensus : ATCAAGGGGATTTTGACTACCCTGT-CATTTTTGCCATGGGGATTTTGACTAC----C---------C-----TAT---------C----------GA---------GGGGATTTTG---ACTACCCTGTCA-TTTTT--AGCCAT-GGGGATTTTGA
Reference ( family-574 ) : ATCAAGGGGATTTTGACTACCCTGT-CATTTTTGCCATGGGGATTTTGACTAC----C---------C-----TAT---------C----------GA---------GGGGATTTTG---ACTACCCTGTCA-TTTTT--AGCCAT-GGGGATTTTGA
gi|144297 : ATCAAGGGGATTTTGACCACCCTGT-TA--------------ATTCTG---------------------------T---------C----------AA---------GGGGATTTTG---ACTACTATGTCA-TTTTTG-AGCCAT-GGGGATTTTGA
gi|144298 : CCAAGGGGATTTTGACCAC----C---------C-----TGTTAATTCTGTC----------GA---------GGGGATTTTG---ACTACCTTGTCA-GTTTTCGAGCCAT-GGGGATTTTGA
gi|144299 : aATCAAGGGGATTTTGACTACCCCTC-TATTTTGACCAAGGGGATTTTGACCAC----CCTGTTAATTC-----TGT---------C----------GA---------GGGGATTTTG---A
gi|144300 : ATCAAGGGGATTTTGACTTTCCTAT-TATTGATGCCATGGGGATTTTGACTAC----C---------C------AT---------C----------AA---------GGATATTTTG---ACTACACTATCA-TTTTT---GCCAT-GGGGATTTTGA
gi|144301 : ATCAAGGATATTTTGACTACACTAT-CATTTTTGCCATGGGGATTTTGACTAC----C---------C------AT---------C----------AA---------GGGGATTTTG---A
gi|144302 : CATGGAGATTTTGAGTAC----C---------C------AT---------C----------AA---------GGGGATTTTG---ACTTTCCTATTA-TTGAT---GCCAT-GGGGATTTTGA
gi|144303 : atATCAAGGGGATTTTGACCACCCTGT-TA--------------ATTCTG---------------------------T---------C----------AA---------GGGAATTTTG---ACTACCATGTCA-TTTTCA-AGCTGT-GGGGATTTTGA
gi|144304 : CATGGGGATTTTGAGAAC----C---------C------AT---------C----------AT---------GGGGATTTT----ACTTCCCTATCA-TTTTT---GCCAT-GGGGATTATGA
gi|144305 : atATCATGGGGATTTT-ACTTCCCTAT-CATTTTTGCCATGGGGATTATGACAAC----C---------C------AT---------C----------AA---------GGGGATTTTG---A
gi|144306 : ATCAAGGGGATTTTGACCACCCTGT-TA--------------ATTCTG---------------------------T---------C----------AA---------GGGAATTTTG---ACTACCATGTCA-TTTTCA-AGCTGT-GGGGATTTTGA
gi|144307 : CATGGGGATTTTGAGAAC----C---------C------AT---------C----------AT---------GGGGATTTT----ACTTCCCTATCA-TTTTT---GCCAT-GGGGATTATGA
gi|144308 : atATCATGGGGATTTT-ACTTCCCTAT-CATTTTTGCCATGGGGATTATGACAAC----C---------C------AT---------C----------AA---------GGGGATTTTG---A
gi|144309 : CCAAGGGAATTTTGACCAC----C---------C-----TGTTAATTCTGTC----------GA---------GGGGATTTTG---ACTACCTTGTCA-TTTTTG-AGCCAT-GGGGATTTTGA
gi|144310 : aCATGGGGATTTTGACTAC----C---------C------AT---------C----------AA---------GGGGATTTTA---ACTACCCCTCTA-TTTTG--A-CCAA-GGGAATTTTGA
gi|144311 : atCCAAGGGGATTTTGACCAC----C---------C-----TGTTAATTCTGTC----------GA---------AGGGATTTTG---ACTACCATGTCATTTTTT--AGCAAT-GGGGATTTTGA
gi|144312 : aATCAAGGGGATTTTGACTACCCTAT-CATTTTTGCCATGGGGATTTTGACTA-----C---------C-----TAT---------C----------AA---------GTGGATTTTG---A
gi|144313 : ATCAAGTGGATTTTGACCACCCTGT-TAATTCTG
gi|144314 : ATCAGGGGGATTTTGATTACA-----CAT------CAAGGGGATTTTAACTAC----C---------C-----C-T---------C------------------------TATTTTG---ACCACCTTTTTA-ATTCT--ATCGA--GGGGATTTTGAtnnnnnnnnnnctg
gi|144315 : ATCAAGGGGATTTTGACCACCCTGT-TAATTCTGTCATGGGGATTTTGACTAC----C---------C------AT---------C----------AA---------GGGGATTTTG---A
gi|144316 : ATCAAGGGGATTTTGACCACCCTGT-TAATTCTGTCATGGGGATTTTGACTA
gi|144317 : CAAGGGGATTTTGACTAC----C---------C------AT---------C----------AA---------GGGGATTTTG---ACCACCCTGTTA-ATTCT---GTCAT-GGGGATTTTGAtatatatattta
gi|144318 : atATCAAGAGGATTT-GACTACCTTGTACATTCT-GTTAAGGCGATTTTGACTAC--------------------TAT----------------------------------------G--------CCTGT---TTTTG--AGCCAT-GGGGATTTTGA
gi|144319 : ATCATGGAGATTTTGACCACCCTGT-CATTTTTGCCATGGGGATTTTGACTAC----C----------------AT---------C----------A------------------------------TGGCA-TTTTT---GCCAT-GGGGATTTT
gi|144320 : AT---------C----------GT---------GGGGATTTTG---AATACCCTGACA--TTTT--AGCCAT-GGGGATTTTGA
gi|144320 : ATCGTGGGGATTTTGAATACCCTGA-CATTTTAGCCATGGGGATTTTGA------------------------------------------------------------GTATTATG-------CCAT-----TTTTT--AACCAT-TGGGATTTTGAgtattatgccattttttaaccattgggattttga
gi|144321 : ACCATGGGGATTTTGAATACCCTAA-CATTTTAGCCATGTGGATTTTGAGTAC----T---------C-----TA----------------------A--------------------------------CA-T-TTT--AGCCAT-GGGGATTTTGA
gi|144322 : ATTAAGGGGATTTTGACTACCC
gi|144322 : GGGGATTTTGACTAC----C---------C------AT---------T----------GA---------GAGGATTTTG---ATTACCTTATCA-TTTTT---GCCAT-AGGGATTTTAAattgagaggattttgattaccttatcatttttgccatagggattttaa
gi|144323 : attaaATTGAGAGGATTTTGATTACCTTAT-CATTTTTGCCATAGGGATTTTAACT-------------------------------------------------------------TTTTG---ACTTCTCTGCCA-TTTTTG-AGCCAT-GAGAATTTT
gi|144324 : GGGGATTCTTACTAC----C---------C------AT---------C----------AT---------GGAGATTTTG---ACCACCCTGTCA-TTTTT---GCCAT-GGGGATTTTGA
gi|144325 : aGGGTATTTTGACTACCCTGT-AAATTCTACTGTGGGTATTTTGAATAC----C---------C-----TGT---------A----------AATTCTACTGTGGGTATTTTG---A
gi|144326 : GGGTATTTTGAATACCCTGT-AAATTCTACTGTGGGTATTTTGAATAC----C---------C-----TGT---------A----------AATTCTACTGTGGGTATTTTG---A
gi|144327 : GGGATTTTGACCACACTGC---------CAGTTATGT---------C----------GA---------GGGGATTTTG---ACTAATATGCCA-TTTTTG-AGCCATGGGGGATTTTGA
gi|144328 : GGGATTTTGAACAC----C---------C-----TGTTAATACTGTC----------GA---------GGAGATTTTG---ACCACTAGGCCA-TTTTTG-AGCCGT-GGGGATTTTAA
gi|144329 : GGATTTTAACCAC----C---------C-----TGT---------TAAATTCTGTTGA---------GGGGATTTTGATAACTAAACT---A-TTTTT--AGTCAT-GTGGATTTTG
gi|144330 : GGATTTTGAGTACTCTAA-CATTTTAGCCATGGGGATTTTGAGTAC---------------------AT----------------------------------------------------GCCA-TTTTTG-AACCAT-GGGGATTTTGA
gi|144331 : ATTTTGACCAC----CTTTTTAATTC-----TAT---------C----------GA---------GGGGATTTTG---ACTACCAAGTCATTTTTT--AGCCAT-GGGGATTTTGA
Alignments
lowQualScore : 5555555555555555555555555555555555555555555555555 222
lowQualScore : 1 4 33 0 0 2222 1111111111111111111111111111111111111111111111111 222 3 3 000 1
lowQualScore : . . .. . . .... ................................................. ... . . ... .
lowQualScore : 9 2 11 1 4 6666 3333333333333333333333333333333333333333333333333 111 0 1 555 5
consensus : ATCAAGGGGATTTTGACTACCCTGT-CATTTTTGCCATGGGGATTTTGACTAC----C---------C-----TAT---------C----------GA---------GGGGATTTTG---ACTACCCTGTCA-TTTTT--AGCCAT-GGGGATTTTGA
Reference ( family-574 ) : ATCAAGGGGATTTTGACTACCCTGT-CATTTTTGCCATGGGGATTTTGACTAC----C---------C-----TAT---------C----------GA---------GGGGATTTTG---ACTACCCTGTCA-TTTTT--AGCCAT-GGGGATTTTGA
gi|144297 : ATCAAGGGGATTTTGACCACCCTGT-TA--------------ATTCTG---------------------------T---------C----------AA---------GGGGATTTTG---ACTACTATGTCA-TTTTTG-AGCCAT-GGGGATTTTGA
gi|144298 : CCAAGGGGATTTTGACCAC----C---------C-----TGTTAATTCTGTC----------GA---------GGGGATTTTG---ACTACCTTGTCA-GTTTTCGAGCCAT-GGGGATTTTGA
gi|144299 : aATCAAGGGGATTTTGACTACCCCTC-TATTTTGACCAAGGGGATTTTGACCAC----CCTGTTAATTC-----TGT---------C----------GA---------GGGGATTTTG---A
gi|144300 : ATCAAGGGGATTTTGACTTTCCTAT-TATTGATGCCATGGGGATTTTGACTAC----C---------C------AT---------C----------AA---------GGATATTTTG---ACTACACTATCA-TTTTT---GCCAT-GGGGATTTTGA
gi|144301 : ATCAAGGATATTTTGACTACACTAT-CATTTTTGCCATGGGGATTTTGACTAC----C---------C------AT---------C----------AA---------GGGGATTTTG---A
gi|144302 : CATGGAGATTTTGAGTAC----C---------C------AT---------C----------AA---------GGGGATTTTG---ACTTTCCTATTA-TTGAT---GCCAT-GGGGATTTTGA
gi|144303 : atATCAAGGGGATTTTGACCACCCTGT-TA--------------ATTCTG---------------------------T---------C----------AA---------GGGAATTTTG---ACTACCATGTCA-TTTTCA-AGCTGT-GGGGATTTTGA
gi|144304 : CATGGGGATTTTGAGAAC----C---------C------AT---------C----------AT---------GGGGATTTT----ACTTCCCTATCA-TTTTT---GCCAT-GGGGATTATGA
gi|144305 : atATCATGGGGATTTT-ACTTCCCTAT-CATTTTTGCCATGGGGATTATGACAAC----C---------C------AT---------C----------AA---------GGGGATTTTG---A
gi|144306 : ATCAAGGGGATTTTGACCACCCTGT-TA--------------ATTCTG---------------------------T---------C----------AA---------GGGAATTTTG---ACTACCATGTCA-TTTTCA-AGCTGT-GGGGATTTTGA
gi|144307 : CATGGGGATTTTGAGAAC----C---------C------AT---------C----------AT---------GGGGATTTT----ACTTCCCTATCA-TTTTT---GCCAT-GGGGATTATGA
gi|144308 : atATCATGGGGATTTT-ACTTCCCTAT-CATTTTTGCCATGGGGATTATGACAAC----C---------C------AT---------C----------AA---------GGGGATTTTG---A
gi|144309 : CCAAGGGAATTTTGACCAC----C---------C-----TGTTAATTCTGTC----------GA---------GGGGATTTTG---ACTACCTTGTCA-TTTTTG-AGCCAT-GGGGATTTTGA
gi|144310 : aCATGGGGATTTTGACTAC----C---------C------AT---------C----------AA---------GGGGATTTTA---ACTACCCCTCTA-TTTTG--A-CCAA-GGGAATTTTGA
gi|144311 : atCCAAGGGGATTTTGACCAC----C---------C-----TGTTAATTCTGTC----------GA---------AGGGATTTTG---ACTACCATGTCATTTTTT--AGCAAT-GGGGATTTTGA
gi|144312 : aATCAAGGGGATTTTGACTACCCTAT-CATTTTTGCCATGGGGATTTTGACTA-----C---------C-----TAT---------C----------AA---------GTGGATTTTG---A
gi|144313 : ATCAAGTGGATTTTGACCACCCTGT-TAATTCTG
gi|144314 : ATCAGGGGGATTTTGATTACA-----CAT------CAAGGGGATTTTAACTAC----C---------C-----C-T---------C------------------------TATTTTG---ACCACCTTTTTA-ATTCT--ATCGA--GGGGATTTTGAtnnnnnnnnnnctg
gi|144315 : ATCAAGGGGATTTTGACCACCCTGT-TAATTCTGTCATGGGGATTTTGACTAC----C---------C------AT---------C----------AA---------GGGGATTTTG---A
gi|144316 : ATCAAGGGGATTTTGACCACCCTGT-TAATTCTGTCATGGGGATTTTGACTA
gi|144317 : CAAGGGGATTTTGACTAC----C---------C------AT---------C----------AA---------GGGGATTTTG---ACCACCCTGTTA-ATTCT---GTCAT-GGGGATTTTGAtatatatattta
gi|144318 : atATCAAGAGGATTT-GACTACCTTGTACATTCT-GTTAAGGCGATTTTGACTAC--------------------TAT----------------------------------------G--------CCTGT---TTTTG--AGCCAT-GGGGATTTTGA
gi|144319 : ATCATGGAGATTTTGACCACCCTGT-CATTTTTGCCATGGGGATTTTGACTAC----C----------------AT---------C----------A------------------------------TGGCA-TTTTT---GCCAT-GGGGATTTT
gi|144320 : AT---------C----------GT---------GGGGATTTTG---AATACCCTGACA--TTTT--AGCCAT-GGGGATTTTGA
gi|144320 : ATCGTGGGGATTTTGAATACCCTGA-CATTTTAGCCATGGGGATTTTGA------------------------------------------------------------GTATTATG-------CCAT-----TTTTT--AACCAT-TGGGATTTTGAgtattatgccattttttaaccattgggattttga
gi|144321 : ACCATGGGGATTTTGAATACCCTAA-CATTTTAGCCATGTGGATTTTGAGTAC----T---------C-----TA----------------------A--------------------------------CA-T-TTT--AGCCAT-GGGGATTTTGA
gi|144322 : ATTAAGGGGATTTTGACTACCC
gi|144322 : GGGGATTTTGACTAC----C---------C------AT---------T----------GA---------GAGGATTTTG---ATTACCTTATCA-TTTTT---GCCAT-AGGGATTTTAAattgagaggattttgattaccttatcatttttgccatagggattttaa
gi|144323 : attaaATTGAGAGGATTTTGATTACCTTAT-CATTTTTGCCATAGGGATTTTAACT-------------------------------------------------------------TTTTG---ACTTCTCTGCCA-TTTTTG-AGCCAT-GAGAATTTT
gi|144324 : GGGGATTCTTACTAC----C---------C------AT---------C----------AT---------GGAGATTTTG---ACCACCCTGTCA-TTTTT---GCCAT-GGGGATTTTGA
gi|144325 : aGGGTATTTTGACTACCCTGT-AAATTCTACTGTGGGTATTTTGAATAC----C---------C-----TGT---------A----------AATTCTACTGTGGGTATTTTG---A
gi|144326 : GGGTATTTTGAATACCCTGT-AAATTCTACTGTGGGTATTTTGAATAC----C---------C-----TGT---------A----------AATTCTACTGTGGGTATTTTG---A
gi|144327 : GGGATTTTGACCACACTGC---------CAGTTATGT---------C----------GA---------GGGGATTTTG---ACTAATATGCCA-TTTTTG-AGCCATGGGGGATTTTGA
gi|144328 : GGGATTTTGAACAC----C---------C-----TGTTAATACTGTC----------GA---------GGAGATTTTG---ACCACTAGGCCA-TTTTTG-AGCCGT-GGGGATTTTAA
gi|144329 : GGATTTTAACCAC----C---------C-----TGT---------TAAATTCTGTTGA---------GGGGATTTTGATAACTAAACT---A-TTTTT--AGTCAT-GTGGATTTTG
gi|144330 : GGATTTTGAGTACTCTAA-CATTTTAGCCATGGGGATTTTGAGTAC---------------------AT----------------------------------------------------GCCA-TTTTTG-AACCAT-GGGGATTTTGA
gi|144331 : ATTTTGACCAC----CTTTTTAATTC-----TAT---------C----------GA---------GGGGATTTTG---ACTACCAAGTCATTTTTT--AGCCAT-GGGGATTTTGA
blockSeqs : A T TG ACTG CTGTTAAATTCTGTTGA ATA T T CGA G
blockSeqs : . T AT . CTGTTAATTCTGTCGA . C T AA .
blockSeqs : . T TT . CTGTTAATTCTGTCGA . C . AA .
blockSeqs : . T TT . CTGTTAATTCTGTCGA . A . GA .
blockSeqs : . T TT . CTGTTAATTCTGTCGA . C . GA .
blockSeqs : . T TT . CTGTAAATTCTACTGT . A . GA .
blockSeqs : . A CT . CTGTAAATTCTACTGT . C . GA .
blockSeqs : . T CT . CTGTTAATACTGTCGA . T . GA .
blockSeqs : . A CT . TTTTTAATTCTATCGA . C . A .
blockSeqs : . A TT . CAGTTATGTCGA . A . A .
blockSeqs : . T TA . CTATCAA . T . A .
blockSeqs : . T TA . CATCAA . C . A .
blockSeqs : . T TT . CATCAA . C . A .
blockSeqs : . T CT . CATCAA . C . A .
blockSeqs : . T CT . CATCAT . A . A .
blockSeqs : . A TA . CATCAA . T . A .
blockSeqs : . A T . CATCAT . C . A .
blockSeqs : . T . . CATCAA . C . . .
blockSeqs : . . . . CATCAA . A . . .
blockSeqs : . . . . CATCAA . A . . .
blockSeqs : . CATCAA . C . . .
blockSeqs : . CATTGA . A . . .
blockSeqs : . CATCAT . . . . .
blockSeqs : . TCAA . . . . .
blockSeqs : . TCAA . . . . .
blockSeqs : . CCTC .
blockSeqs : . ATCA .
blockSeqs : . CTAA .
blockSeqs : . TAT .
blockSeqs : . AT .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : .
blockSeqCons : TT CGTCGA******************************************* A**
originalCons : ATCAAGGGGATTTTGACTACCCTGT-CATTTTTGCCATGGGGATTTTGACTAC----C---------C-----TAT---------C----------GA---------GGGGATTTTG---ACTACCCTGTCA-TTTTT--AGCCAT-GGGGATTTTGA
finalCons : ATCAAGGGGATTTTGACTACCCTGT-CATTTTTGCCATGGGGATTTTGACTAC----CCGTCGA-------------------------------------------GGGGATTTTG---ACTACCCTGTCA-TTTTTA--GCCAT-GGGGATTTTGA
Alignments
lowQualScore : 11111 3333333333333333333333333 111
lowQualScore : 1 33333 1 22 2222 2222222222222222222222222 222 2 4 999 1
lowQualScore : . ..... . .. .... ......................... ... . . ... .
lowQualScore : 7 88888 0 44 4444 2222222222222222222222222 111 6 4 444 5
consensus : ATCAAGGGGATTTTGACTACCCTGT-CATTTTTGCCATGGGGATTTTGACTAC----CC-----------GTCGA---------GGGGATTTTG---ACTACCCTGTCA-TTTTT--AGCCAT-GGGGATTTTGA
Reference ( family-574 ) : ATCAAGGGGATTTTGACTACCCTGT-CATTTTTGCCATGGGGATTTTGACTAC----CC-----------GTCGA---------GGGGATTTTG---ACTACCCTGTCA-TTTTT--AGCCAT-GGGGATTTTGA
gi|144297 : ATCAAGGGGATTTTGACCACCCTGT-TA--------------ATT------------CT-----------GTCAA---------GGGGATTTTG---ACTACTATGTCA-TTTTTG-AGCCAT-GGGGATTTTGA
gi|144298 : ACCAAGGGGATTTTGACCACCCTGT-TA--------------ATT------------CT-----------GTCGA---------GGGGATTTTG---ACTACCTTGTCA-GTTTTCGAGCCAT-GGGGATTTTGA
gi|144299 : ATCAAGGGGATTTTGACTACCCCTC-TATTTTGACCAAGGGGATTTTGACCAC----CCTGTTAATTCT-GTCGA---------GGGGATTTTG---A
gi|144300 : ATCAAGGGGATTTTGACTTTCCTAT-TATTGATGCCATGGGGATTTTGACTAC----CC-----------ATCAA---------GGATATTTTG---ACTACACTATCA-TTTTT---GCCAT-GGGGATTTTGA
gi|144301 : ATCAAGGATATTTTGACTACACTAT-CATTTTTGCCATGGGGATTTTGACTAC----CC-----------ATCAA---------GGGGATTTTG---A
gi|144302 : CATGGAGATTTTGAGTAC----CC-----------ATCAA---------GGGGATTTTG---ACTTTCCTATTA-TTGAT---GCCAT-GGGGATTTTGA
gi|144303 : atATCAAGGGGATTTTGACCACCCTGT-TA--------------ATT------------CT-----------GTCAA---------GGGAATTTTG---ACTACCATGTCA-TTTTCA-AGCTGT-GGGGATTTTGA
gi|144304 : CATGGGGATTTTGAGAAC----CC-----------ATCAT---------GGGGATTTT----ACTTCCCTATCA-TTTTT---GCCAT-GGGGATTATGA
gi|144305 : atATCATGGGGATTTT-ACTTCCCTAT-CATTTTTGCCATGGGGATTATGACAAC----CC-----------ATCAA---------GGGGATTTTG---A
gi|144306 : ATCAAGGGGATTTTGACCACCCTGT-TA--------------ATT------------CT-----------GTCAA---------GGGAATTTTG---ACTACCATGTCA-TTTTCA-AGCTGT-GGGGATTTTGA
gi|144307 : CATGGGGATTTTGAGAAC----CC-----------ATCAT---------GGGGATTTT----ACTTCCCTATCA-TTTTT---GCCAT-GGGGATTATGA
gi|144308 : atATCATGGGGATTTT-ACTTCCCTAT-CATTTTTGCCATGGGGATTATGACAAC----CC-----------ATCAA---------GGGGATTTTG---A
gi|144309 : ACCAAGGGAATTTTGACCACCCTGT-TA--------------ATT------------CT-----------GTCGA---------GGGGATTTTG---ACTACCTTGTCA-TTTTTG-AGCCAT-GGGGATTTTGA
gi|144310 : CATGGGGATTTTGACTAC----CC-----------ATCAA---------GGGGATTTTA---ACTACCCCTCTA-TTTTG--A-CCAA-GGGAATTTTGA
gi|144311 : atACCAAGGGGATTTTGACCACCCTGT-TA--------------ATT------------CT-----------GTCGA---------AGGGATTTTG---ACTACCATGTCATTTTTT--AGCAAT-GGGGATTTTGA
gi|144312 : ATCAAGGGGATTTTGACTACCCTAT-CATTTTTGCCATGGGGATTTTGACTAC----CT-----------ATCAA---------GTGGATTTTG---A
gi|144313 : ATCAAGTGGATTTTGACCACCCTGT-TAATTCTG
gi|144314 : ATCAGGGGGATTTTGATTACA-----CAT------CAAGGGGATTTTAACTAC----CC-----------CTC--------------TATTTTG---ACCACCTTTTTA-ATTCT--ATCGA--GGGGATTTTGAtnnnnnnnnnnctg
gi|144315 : ATCAAGGGGATTTTGACCACCCTGT-TAATTCTGTCATGGGGATTTTGACTAC----CC-----------ATCAA---------GGGGATTTTG---A
gi|144316 : ATCAAGGGGATTTTGACCACCCTGT-TAATTCTGTCATGGGGATTTTGACTA
gi|144317 : CAAGGGGATTTTGACTAC----CC-----------ATCAA---------GGGGATTTTG---ACCACCCTGTTA-ATTCT---GTCAT-GGGGATTTTGAtatatatattta
gi|144318 : atATCAAGAGGATTT-GACTACCTTGTACATTCT-GTTAAGGCGATTTTGACTAC-------------------------------------TATG--------CCTGT---TTTTG--AGCCAT-GGGGATTTTGA
gi|144319 : ATCATGGAGATTTTGACCACCCTGT-CATTTTTGCCATGGGGATTTTGACTAC----C------------------------------------------ATCATGGCA-TTTTT---GCCAT-GGGGATTTT
gi|144320 : ATCGTGGGGATTTTGAATACCCTGA-CATTTTAGCCATGGGGATTTTGA---------------------GT-------------------------ATTA---TGCCATTTTTT--AACCAT-TGGGATTTTGA
gi|144321 : ACCATGGGGATTTTGAATACCCTAA-CATTTTAGCCATGTGGATTTTGAGTAC----TC---------------------------------TA---AC-A----------TTTT--AGCCAT-GGGGATTTTGA
gi|144322 : ATTAAGGGGATTTTGACTACCC
gi|144322 : GGGGATTTTGACTAC----CC-----------ATTGA---------GAGGATTTTG---ATTACCTTATCA-TTTTT---GCCAT-AGGGATTTTAAattgagaggattttgattaccttatcatttttgccatagggattttaa
gi|144323 : attaaATTGAGAGGATTTTGATTACCTTAT-CATTTTTGCCATAGGGATTTTAACT--------------------------------------TTTTG---ACTTCTCTGCCA-TTTTTG-AGCCAT-GAGAATTTT
gi|144324 : GGGGATTCTTACTAC----CC-----------ATCAT---------GGAGATTTTG---ACCACCCTGTCA-TTTTT---GCCAT-GGGGATTTTGA
gi|144325 : aGGGTATTTTGACTACCCTGT-AAATTCTACTGTGGGTATTTTGAATAC----CC-----------
gi|144325 : GGGTATTTTGACTAC----CCT----------GTAAATTCTACTGTGGGTATTTTG---AATACCCTGTAA-ATTCT--A-CTGT-GGGTATTTTGAtgtaaattctactgtgggtattttga
gi|144326 : GGGTATTTTGAATACCCTGT-AAATTCTACTGTGGGTATTTTGAATAC----CC-----------
gi|144326 : GGGTATTTTGAATAC----CCT----------GTAAATTCTACTGTGGGTATTTTG---AATACCCTGTAA-ATTCT--A-CTGT-GGGTATTTTGAtgtaaattctactgtgggtattttga
gi|144327 : GGGATTTTGACCACACTGCCAGTTAT-----GTCGA---------GGGGATTTTG---ACTAATATGCCA-TTTTTG-AGCCATGGGGGATTTTGA
gi|144328 : GGGATTTTGAACAC----CCTGTTAATACT-GTCGA---------GGAGATTTTG---ACCACTAGGCCA-TTTTTG-AGCCGT-GGGGATTTTAA
gi|144329 : GGATTTTAACCAC----CCTGTTAAATTCTGTTGA---------GGGGATTTTGATAACTAAACT---A-TTTTT--AGTCAT-GTGGATTTTG
gi|144330 : GGATTTTGAGTACTCTAA-CATTTTAGCCATGGGGATTTTGAGTAC---------------------A-----------------------------TGCCA-TTTTTG-AACCAT-GGGGATTTTGA
gi|144331 : ATTTTGACCAC----CTTTTTAATTCT-ATCGA---------GGGGATTTTG---ACTACCAAGTCATTTTTT--AGCCAT-GGGGATTTTGA