lowQualScore : 11 2222222222 1
lowQualScore : 77 2 1 5 888 1 11 1 1 33333 5555555555 22 1 22 1 22 6666666 22 6 33 3 99 4 2 2 5
lowQualScore : .. . . . ... . .. . . ..... .......... .. . .. . .. ....... .. . .. . .. . . . .
lowQualScore : 22 3 3 3 888 2 77 2 2 44444 7777777777 11 6 22 6 22 2222222 44 6 44 7 77 7 5 7 3
consensus : GGCGCGTAGCGTGG-CATACTCAGNT---ACT-CTG--CTGAGTAACA-T-TTG-----AAACCAAAGCCT------A---A--AT-ATTGA--A-AAGG-CTAAAAAGT-------CGAG-AGAAGCAATAGAAATGTAACAGGA--G-G-GG-T-TACAAATAGGTACATAAA
Reference ( gi|30536 ) : GGCAAGTAGCATGG-CATACTCAGAT---ACT-CTG--CTGAGTAATA-T-TTG-----AAACCAAAGCCT------T---A--AT-ATTGA--A-AAGG-CTAAAAAGT-------CGAG-AGAAGCAACAGAAATGTAAGAGGA--G-G-GG-T-TACAAATAGGTACATAAA
gi|30506 : GGCGCGTAGCATGG-TATACTCAGAT---ACT-CTG--CTGAGTAATA-T-TGG-----AAATCAGAGCCT------G---A--AT-ATTGA--A-AAGG-GTCGAAAGT-------CGAG-AGAAGCAGTAGAAATGTAACAGGAG-G-G-GG-T-TACAAATAGGTACATA
gi|30510 : caGGCGTGTAGTGTGT-CATACTCAGAC---ACT-CTG--CTGAGTAATA-C-TTG-----A--CCAAAGCCT------A---A--GT-ATTGA--A-AATA-CTAAAAAGT-------TGAG-AGAAGCAATAGAAATACAATAGGAGGG-G-GG-T-TACAAATAGGTACATAGA
gi|30512 : caGGCGCGTAGGCTGG-CATACACAAAT---ACT-CTG--CTGACTTATA-C-TTG-----AAATCAAAGCCA----------A--AT-ATCGA--A-AAGA-CTTAAAAGT-------CGAG-AGAAGCAACATATATGTAACAGGA--GCG-AA-G-TATAAGCAGGTACATAAA
gi|30534 : caGGCGCGTAGCGTTG-CATACTCAGGT---ACT-CTG--TTAAGTTATA-G-TTG-----AACCCAAAGTCT------A---A--AT-ATTGA--A-AAGA-CTAAAAAGT-------CGAGAAAAAGTAATAAAAATGTATCAGGA--G-
gi|30516 : aGACGAGTAGCGTGG-CATACTCAGAT---ACT-CTG--CTGAGTAACA-T-TTG-----AAACCAAAGCCT------A---A--AT-ATTGA--A-AA
gi|30515 : caGACGAGTAGCGTGG-CATACTCAGAT---ACT-CTG--CTGAGTAACA-T-TTG-----AAACCAAAGCCT------A---A--AT-ATTGA--A-AA
gi|30518 : caGACACGTTGCATGG-CATACTCAGAT---ACT-CTG--CTGAGTAATA-T-TTG-----AAACTATAGCCT------A---A--AT-ATTGA--A-AAGG--TAATAAGT-------
gi|30514 : caGGCGCGTAGCGTGG-CATACTCAGTT---ACT-CTG--CTGAGTAACA-T-TTATTTTTAAATTGACGCCTTA----T---A--AA-AATAA--A-TAAG-CTAAAAGGT-------CAAT-AGAAGCAATAGAAA---AACAGGA--A-G-GG---TACAAATAGGTA
gi|30517 : caGGCGCGTAGCGTGG-CATACTCAGAT---ACT-CTG--CTGAGTAATA-T-TGG-----AAACCAAAGCCA------A---A--AT-ATTAA--A-AA
gi|30521 : caGGCGCGTAGTGTGA-CATACTAAGAT---CCT-CTG--CCGAGTAATA-T-TTG-----AAACCAAAGCCT------T---A--AT-ATTGA--G-AAG
gi|30537 : caGGCGCGTAGCGTGG-CATACTCAGTT---ACT-CAA--CTGAGTAACA-A-TTG-----AAATCAAAGCATAAA---C---A--AT-AT--A--A-AAAG-CT-AAAAGC-------CGAT-AGAAGCAATAAAAAa
gi|30522 : GGCGCGTAGCGTGG-CATACTCAGTT---GCT-CTG--CTGAGTAACA-T-GTG-----AAATCAAATTCT-----------------------A-AAGA--TATAAA----------GAT-AGAAGCAATAAAAA-ATAACAGAA--
gi|30527 : caGGCGGGTAGCATGG-CATACTCAGTTACCACT-CTG--CTGAGTAACA-T-Tcaggg
gi|30526 : caGGCGCGTAGCGTGG-CATACTCAGTTACCACT-CTG--CTGAGTAACA-T-TT
gi|30528 : caGGCGCGTAGCGTGG-CATACTCAGTTACCACT-CTG--CTCAGTAACA-T-T
gi|30532 : caGGCGTGTATCGTGG-TATACTCAGAA---ACT-TTG--CAGAGTAACA-T-TTT-----AAATCGA
gi|30529 : caGGCGCATAGCGTGG-CATACTCAGTTTCCGCT-CTG--CTGAGTAACA-T-Tgcaaatgt
gi|30535 : caGGCGCATAGCGTGG-CATACTCAGTT---ACCACTGTACTGAGTAACA-T-T
gi|30507 : aGTAGAGTGG-CATACTCAGAT---ACT-CTG--CTGAGTAATA-T-TTG-----AAACCAAAGTAT------A---A--AT-ATTGA--A-AGAA-CTAAAAAGT-------CAAT-AGAAGCAAGAGAAATGTAACAGGA--GTG-GG-T-TACAAATAGGTACATAAA
gi|30509 : cagacgcGTAGTATGG-CATACTCAGAT---ACT-TTG--TCGAGTAATA-T-TTG-----CAACCAAAGCCT------A---A--AT-GTTGA--A-AAGG-GTAAAAGGT-------CCAG-AGAAGCAATAGAAATGTAACAGGA--G-G-GG-T-TGCAATTAGGTACATAAA
gi|30513 : caagcgcGTGGCGTGG-CAAACTCAGTT---ACT-CTG--GTGAGCAACA-T-TTG-----AAATCAAAGC------------------ATTCA--A-AGGA-TTAAAGAAT-------CGAT-AGAAGCAATAGACATTTAATAGGA--G-G-GG-TGTTCAAATATGTACTTAAA
gi|30520 : cagtcgcGTAGCATGG-CATATTCAATT---ACT-CTC--CTGAATTACA-T-TTG-----AAATCAAAGCCT------A---G--A-----AA--A-AAGA-CTAAAAAAT-------CT------AGCAAAAGACATTTAGTGGGA--G-G-GA-TGTACAAAAAGGAACTTAAA
gi|30523 : cagacgcGTAGCGTGG-CATACTTAGTT---ACT-CTA--CTGAGTAACA-A-CTG-----AAATCAAAGCAT------A---A--CT-AATAA--ACAAGG-CTA
gi|30524 : caagcgtGTAGCGTGG-CATACTCAGTT---ACT-CTG--CTGA-TAACA-T-TTG----------AAAGTCT------A---A--A-----GA--A-A-----TAAAGA---------CAGA-AGAA--AAAAAAAATACAAGGAGA--G-G-G
gi|30525 : cagccgcGTAGCGTGGGCATATTTAGTT---ATT-CTT--CTGAGTAACA-T-TTG-----AAATCAAATCCC------C---A--A
gi|30538 : catgcgcGTGACGTGG-CATACTCAGTT---AAT-CTG--ATCGGTAACATT-TTG-----AAATAAAATCCT------A---A--ATAAATAG--A-GAGG-CTCAAGGGTAAAACAACGAA-AGAAACAATAAAAA-ATAACAGGgtaaatatt
gi|30533 : TAGTATGG-CAAACTAAGAT---ACT-CTG--TTGAGTAATA-T-CAG-----AAACCAAAGCCT------A---A--AT-ATTGA--A-AAAGACTCAAAAGT-------CGAG-AGAAACAATAGAAATGTAACAGGA--G-G-GA-T-TACAGATAGGTACATAAA
gi|30530 : aggtgcaTAGCATGG-AATGCTCAGTT---ACC-CTG--TTGAGTGATA-T-TTG-----AAAC
gi|30531 : caggtgcaTAGCATGT-CATTCTCAGTT---ACT-CTA--CTGAGTCACG-TGTTG-----AAATCAAAG
gi|30508 : caggtgccAGCGTTG-CATACTCAGAC---ACT-CTG--CTGAGTGATA-T-TTA-----AAACCAAGGCCT------A---A--AA-ATTGA--A-AAGA-CTAAAAAGC-------CGAG-AGAAGCAATAAAAATGTAACAGGA--G-GAGG-T-TATAAATAGGTACATAAA
gi|30539 : caggtgcga-CATACTCAATT---ACA-CTG--CTGAGTAACA-T-TTG-----AAATTGAAGCCT------TACAA--AT-ACTG------AGG-CAAAAAAGT-------CGAT-AGAAGCAATAGAAA---AACAGGA------GG-T-TTCTAATAGGTA
gi|30511 : CTCAGAA---ACT-CTC--CTGAGTAATA-T-TTG-----AAACCAAAGCAT------A---A--AT-ACTGAGGA-AAAA-ATAAAAAGT-------CGAG-AGAAGCAATAGAAATGTAACAGGA--G-G-GGCT-TCCGAATAGGTACATAAA
gi|30519 : caagcgcgtatagttgttttTGAGTATTA-T-AGG-----AAACCAAAGCCTATAATTT---ATTAT-ATTGA--A-AATA-CTAAAAAAC-------CGAG-AGAAGTAATAGAAATTTAACAAGAG-G-G-GG-T-TACAAATATATACATAAA
gi|30540 : caggcgcgtagcgtagaGAGTAATA-T-TTG-----AAACCAAAGTCT------A---A--AT-ATTGA--G-AAGA-CTAAAAAGT-------GGAG-AGAAGCAATAAAAATATATCAGGAT-G-G-TG-T-TACAAATAGGTACATAGA
gi|30541 : AATGT-------CGAG-AGAAGCAATTGAAAGGTAACAGGA--G-G-GG-T-TACAAACAGGTACATAAA
Alignments
lowQualScore : 1 1 888 1 11 1 33333 33333 66666 444444 22 1 1 22 1 1 5555555 22 33 99 4 2 2 5
lowQualScore : . . ... . .. . ..... ..... ..... ...... .. . . .. . . ....... .. .. .. . . . .
lowQualScore : 2 0 555 2 77 2 44444 66666 11111 111111 00 4 5 11 5 8 9999999 22 55 22 4 4 4 0
consensus : GGCGCGTAGCGTGG-CATACTCAGNT---ACT-CTG--CTGAGTAACA-TTTG-----AAACCAAAGCC-----T-----A------A--AT-ATTG-A--A-AAGG-CTAAAAAGT-------CGAG-AGAAGCAATAGAAATGTAACAGGA--G-G-GG-T-TACAAATAGGTACATAAA
Reference ( family-570 ) : GGCGCGTAGCGTGG-CATACTCAGNT---ACT-CTG--CTGAGTAACA-TTTG-----AAACCAAAGCC-----T-----A------A--AT-ATTG-A--A-AAGG-CTAAAAAGT-------CGAG-AGAAGCAATAGAAATGTAACAGGA--G-G-GG-T-TACAAATAGGTACATAAA
gi|30506 : GGCGCGTAGCATGG-TATACTCAGAT---ACT-CTG--CTGAGTAATA-TTGG-----AAATCAGAGCC-----T-----G------A--AT-ATTG-A--A-AAGG-GTCGAAAGT-------CGAG-AGAAGCAGTAGAAATGTAACAGGAG-G-G-GG-T-TACAAATAGGTACATA
gi|30507 : caGACGCGTAGAGTGG-CATACTCAGAT---ACT-CTG--CTGAGTAATA-TTTG-----AAACCAAAGTA-----T-----A------A--AT-ATTG-A--A-AGAA-CTAAAAAGT-------CAAT-AGAAGCAAGAGAAATGTAACAGGA--GTG-GG-T-TACAAATAGGTACATAAA
gi|30508 : caGGTGCGAAGCGTTG-CATACTCAGAC---ACT-CTG--CTGAGTGATA-TTTA-----AAACCAAGGCC-----T-----A------A--AA-ATTG-A--A-AAGA-CTAAAAAGC-------CGAG-AGAAGCAATAAAAATGTAACAGGA--G-GAGG-T-TATAAATAGGTACATAAA
gi|30509 : caGCGCGTAGTATGG-CATACTCAGAT---ACT-TTG--TCGAGTAATA-TTTG-----CAACCAAAGCC-----T-----A------A--AT-GTTG-A--A-AAGG-GTAAAAGGT-------CCAG-AGAAGCAATAGAAATGTAACAGGA--G-G-GG-T-TGCAATTAGGTACATAAA
gi|30510 : caaGGCGTGTAGTGTGT-CATACTCAGAC---ACT-CTG--CTGAGTAATA-CTTG-----A--CCAAAGCC-----T-----A------A--GT-ATTG-A--A-AATA-CTAAAAAGT-------TGAG-AGAAGCAATAGAAATACAATAGGAGGG-G-GG-T-TACAAATAGGTACATAGA
gi|30511 : caGCGCGTATAGTTG-TTTTCTCAGAA---ACT-CTC--CTGAGTAATA-TTTG-----AAACCAAAGCA-----T-----A------A--AT-ACTG-AGGA-AAAA-ATAAAAAGT-------CGAG-AGAAGCAATAGAAATGTAACAGGA--G-G-GGCT-TCCGAATAGGTACATAAA
gi|30512 : caaGGCGCGTAGGCTGG-CATACACAAAT---ACT-CTG--CTGACTTATA-CTTG-----AAATCAAAGCC-----------A------A--AT-ATCG-A--A-AAGA-CTTAAAAGT-------CGAG-AGAAGCAACATATATGTAACAGGA--GCG-AA-G-TATAAGCAGGTACATAAA
gi|30513 : caCGCGTGGCGTGG-CAAACTCAGTT---ACT-CTG--GTGAGCAACA-TTTG-----AAATCAAAGC-------------------------ATTC-A--A-AGGA-TTAAAGAAT-------CGAT-AGAAGCAATAGACATTTAATAGGA--G-G-GG-TGTTCAAATATGTACTTAAA
gi|30514 : cagtGGCGCGTAGCGTGG-CATACTCAGTT---ACT-CTG--CTGAGTAACA-TTTATTTTTAAATTGACGCC-----TTATAAA------A--AT-A----A--A-TAAG-CTAAAAGGT-------CAAT-AGAAGCAATAGAAA---AACAGGA--A-G-GG---TACAAATAGGTA
gi|30515 : caGACGAGTAGCGTGG-CATACTCAGAT---ACT-CTG--CTGAGTAACA-TTTG-----AAACCAAAGCC-----T-----A------A--AT-ATTG-A--A-AA
gi|30516 : caGACGAGTAGCGTGG-CATACTCAGAT---ACT-CTG--CTGAGTAACA-TTTG-----AAACCAAAGCC-----T-----A------A--AT-ATTG-A--A-AA
gi|30517 : caGGCGCGTAGCGTGG-CATACTCAGAT---ACT-CTG--CTGAGTAATA-TTGG-----AAACCAAAGCC-----A-----A------A--AT-ATTA-A--A-AA
gi|30518 : caGACACGTTGCATGG-CATACTCAGAT---ACT-CTG--CTGAGTAATA-TTTG-----AAACTATAGCC-----T-----A------A--AT-ATTG-A--A-AAGG--TAATAAGT-------
gi|30519 : caGGCGCGTAGCGT----------AGAT--------------GAGTATTA-TAGG-----AAACCAAAGCC-----T-----ATAATTTATTAT-ATTG-A--A-AATA-CTAAAAAAC-------CGAG-AGAAGTAATAGAAATTTAACAAGAG-G-G-GG-T-TACAAATATATACATAAA
gi|30520 : caGACGCGTAGCATGG-CATATTCAATT---ACT-CTC--CTGAATTACA-TTTG-----AAATCAAAGCC-----T-----A------G--A-----A-A--A-AAGA-CTAAAAAAT-------CT------AGCAAAAGACATTTAGTGGGA--G-G-GA-TGTACAAAAAGGAACTTAAA
gi|30521 : caGGCGCGTAGTGTGA-CATACTAAGAT---CCT-CTG--CCGAGTAATA-TTTG-----AAACCAAAGCC-----T-----T------A--AT-ATTG-A--G-AAG
gi|30522 : caGGCGCGTAGCGTGG-CATACTCAGTT---GCT-CTG--CTGAGTAACA-TGTG-----AAATCAAATTC-----T-----A------A--AG-AT---------A----TAAA------------GAT-AGAAGCAATAAAAA-ATAACAGAA--a
gi|30523 : caGCGTGTAGCGTGG-CATACTTAGTT---ACT-CTA--CTGAGTAACA-ACTG-----AAATCAAAGCA-----T-----A------A--CT-AATA-A--ACAAGG-CTAcaggg
gi|30524 : caaCGCGTAGCGTGG-CATACTCAGTT---ACT-CTG--CTGA-TAACA-TTTG----------AAAGTC-----T-----A------A--A-----G-A--A-A-----TAAA------------GAC-AGAAGAAA-AAAAAAATACAAGGA--G-A-GG-
gi|30525 : cagcGCGCGTAGCGTGGGCATATTTAGTT---ATT-CTT--CTGAGTAACA-TTTG-----AAATCAAATCCCCAAGT-----A------A--AT-ATTg
gi|30526 : catGGCGCGTAGCGTGG-CATACTCAGTTACCACT-CTG--CTGAGTAACA-TTT
gi|30527 : caGGCGGGTAGCATGG-CATACTCAGTTACCACT-CTG--CTGAGTAACA-TT
gi|30528 : caGGCGCGTAGCGTGG-CATACTCAGTTACCACT-CTG--CTCAGTAACA-TT
gi|30529 : caGGCGCATAGCGTGG-CATACTCAGTTTCCGCT-CTG--CTGAGTAACA-TT
gi|30530 : caGGTGCATAGCATGG-AATGCTCAGTT---ACC-CTG--TTGAGTGATA-TTTG-----AAAC
gi|30532 : caGGCGTGTATCGTGG-TATACTCAGAA---ACT-TTG--CAGAGTAACA-TTTT-----AAATC-GAGC------------A------A--AT-GT
gi|30533 : caGGTGCATAGTATGG-CAAACTAAGAT---ACT-CTG--TTGAGTAATA-TCAG-----AAACCAAAGCC-----T-----A------A--AT-ATTG-A--A-AAAGACTCAAAAGT-------CGAG-AGAAACAATAGAAATGTAACAGGA--G-G-GA-T-TACAGATAGGTACATAAA
gi|30534 : aGGCGCGTAGCGTTG-CATACTCAGGT---ACT-CTG--TTAAGTTATA-GTTG-----AACCCAAAGTC-----T-----A------A--AT-ATTG-A--A-AAGA-CTAAAAAGT-------CGAGAAAAAGTAATAAAAATGTATCAGGA--G-
gi|30535 : aGGCGCATAGCGTGG-CATACTCAGTT---ACCACTGTACTGAGTAACA-TT
gi|30536 : aGGCAAGTAGCATGG-CATACTCAGAT---ACT-CTG--CTGAGTAATA-TTTG-----AAACCAAAGCC-----T-----T------A--AT-ATTG-A--A-AAGG-CTAAAAAGT-------CGAG-AGAAGCAACAGAAATGTAAGAGGA--G-G-GG-T-TACAAATAGGTACATAAA
gi|30537 : GGCGCGTAGCGTGG-CATACTCAGTT---ACT-CAA--CTGAGTAACA-ATTG-----AAATCAAAGCA-----T-----A------A--AC-AATATA--A-AAAG-CT-AAAAGC-------CGAT-AGAAGCAATAAAAA
gi|30538 : GTGACGTGG-CATACTCAGTT---AAT-CTG--ATCGGTAACATTTTG-----AAATAAAATCC-----T-----A------A--ATAAATA-G--A-GAGG-CTCAAGGGTAAAACAACGAA-AGAAACAATAAAAA-ATAACAGG
gi|30539 : -CATACTCAATT---ACA-CTG--CTGAGTAACA-TTTG-----AAATTGAAGCC-----TTAC--A------A--AT-ACTG-------AGG-CAAAAAAGT-------CGAT-AGAAGCAATAGAAA---AACAGGA------GG-T-TTCTAATAGGTA
gi|30540 : GAGTAATA-TTTG-----AAACCAAAGTC-----T-----A------A--AT-ATTG-A--G-AAGA-CTAAAAAGT-------GGAG-AGAAGCAATAAAAATATATCAGGAT-G-G-TG-T-TACAAATAGGTACATAGA
gi|30541 : AATGT-------CGAG-AGAAGCAATTGAAAGGTAACAGGA--G-G-GG-T-TACAAACAGGTACATAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30531 ): CAGGTGCCTAGCATGTCATTCTCAGTTACTCTACTGAGTCACGTGTTGAAATCAAAG
Alignments
lowQualScore : 1 1 888 1 11 1 33333 33333 66666 444444 22 1 1 22 1 1 5555555 22 33 99 4 2 2 5
lowQualScore : . . ... . .. . ..... ..... ..... ...... .. . . .. . . ....... .. .. .. . . . .
lowQualScore : 2 0 555 2 77 2 44444 66666 11111 111111 00 4 5 11 5 8 9999999 22 55 22 4 4 4 0
consensus : GGCGCGTAGCGTGG-CATACTCAGNT---ACT-CTG--CTGAGTAACA-TTTG-----AAACCAAAGCC-----T-----A------A--AT-ATTG-A--A-AAGG-CTAAAAAGT-------CGAG-AGAAGCAATAGAAATGTAACAGGA--G-G-GG-T-TACAAATAGGTACATAAA
Reference ( family-570 ) : GGCGCGTAGCGTGG-CATACTCAGNT---ACT-CTG--CTGAGTAACA-TTTG-----AAACCAAAGCC-----T-----A------A--AT-ATTG-A--A-AAGG-CTAAAAAGT-------CGAG-AGAAGCAATAGAAATGTAACAGGA--G-G-GG-T-TACAAATAGGTACATAAA
gi|30506 : GGCGCGTAGCATGG-TATACTCAGAT---ACT-CTG--CTGAGTAATA-TTGG-----AAATCAGAGCC-----T-----G------A--AT-ATTG-A--A-AAGG-GTCGAAAGT-------CGAG-AGAAGCAGTAGAAATGTAACAGGAG-G-G-GG-T-TACAAATAGGTACATA
gi|30507 : caGACGCGTAGAGTGG-CATACTCAGAT---ACT-CTG--CTGAGTAATA-TTTG-----AAACCAAAGTA-----T-----A------A--AT-ATTG-A--A-AGAA-CTAAAAAGT-------CAAT-AGAAGCAAGAGAAATGTAACAGGA--GTG-GG-T-TACAAATAGGTACATAAA
gi|30508 : caGGTGCGAAGCGTTG-CATACTCAGAC---ACT-CTG--CTGAGTGATA-TTTA-----AAACCAAGGCC-----T-----A------A--AA-ATTG-A--A-AAGA-CTAAAAAGC-------CGAG-AGAAGCAATAAAAATGTAACAGGA--G-GAGG-T-TATAAATAGGTACATAAA
gi|30509 : caGCGCGTAGTATGG-CATACTCAGAT---ACT-TTG--TCGAGTAATA-TTTG-----CAACCAAAGCC-----T-----A------A--AT-GTTG-A--A-AAGG-GTAAAAGGT-------CCAG-AGAAGCAATAGAAATGTAACAGGA--G-G-GG-T-TGCAATTAGGTACATAAA
gi|30510 : caaGGCGTGTAGTGTGT-CATACTCAGAC---ACT-CTG--CTGAGTAATA-CTTG-----A--CCAAAGCC-----T-----A------A--GT-ATTG-A--A-AATA-CTAAAAAGT-------TGAG-AGAAGCAATAGAAATACAATAGGAGGG-G-GG-T-TACAAATAGGTACATAGA
gi|30511 : caGCGCGTATAGTTG-TTTTCTCAGAA---ACT-CTC--CTGAGTAATA-TTTG-----AAACCAAAGCA-----T-----A------A--AT-ACTG-AGGA-AAAA-ATAAAAAGT-------CGAG-AGAAGCAATAGAAATGTAACAGGA--G-G-GGCT-TCCGAATAGGTACATAAA
gi|30512 : caaGGCGCGTAGGCTGG-CATACACAAAT---ACT-CTG--CTGACTTATA-CTTG-----AAATCAAAGCC-----------A------A--AT-ATCG-A--A-AAGA-CTTAAAAGT-------CGAG-AGAAGCAACATATATGTAACAGGA--GCG-AA-G-TATAAGCAGGTACATAAA
gi|30513 : caCGCGTGGCGTGG-CAAACTCAGTT---ACT-CTG--GTGAGCAACA-TTTG-----AAATCAAAGC-------------------------ATTC-A--A-AGGA-TTAAAGAAT-------CGAT-AGAAGCAATAGACATTTAATAGGA--G-G-GG-TGTTCAAATATGTACTTAAA
gi|30514 : cagtGGCGCGTAGCGTGG-CATACTCAGTT---ACT-CTG--CTGAGTAACA-TTTATTTTTAAATTGACGCC-----TTATAAA------A--AT-A----A--A-TAAG-CTAAAAGGT-------CAAT-AGAAGCAATAGAAA---AACAGGA--A-G-GG---TACAAATAGGTA
gi|30515 : caGACGAGTAGCGTGG-CATACTCAGAT---ACT-CTG--CTGAGTAACA-TTTG-----AAACCAAAGCC-----T-----A------A--AT-ATTG-A--A-AA
gi|30516 : caGACGAGTAGCGTGG-CATACTCAGAT---ACT-CTG--CTGAGTAACA-TTTG-----AAACCAAAGCC-----T-----A------A--AT-ATTG-A--A-AA
gi|30517 : caGGCGCGTAGCGTGG-CATACTCAGAT---ACT-CTG--CTGAGTAATA-TTGG-----AAACCAAAGCC-----A-----A------A--AT-ATTA-A--A-AA
gi|30518 : caGACACGTTGCATGG-CATACTCAGAT---ACT-CTG--CTGAGTAATA-TTTG-----AAACTATAGCC-----T-----A------A--AT-ATTG-A--A-AAGG--TAATAAGT-------
gi|30519 : caGGCGCGTAGCGT----------AGAT--------------GAGTATTA-TAGG-----AAACCAAAGCC-----T-----ATAATTTATTAT-ATTG-A--A-AATA-CTAAAAAAC-------CGAG-AGAAGTAATAGAAATTTAACAAGAG-G-G-GG-T-TACAAATATATACATAAA
gi|30520 : caGACGCGTAGCATGG-CATATTCAATT---ACT-CTC--CTGAATTACA-TTTG-----AAATCAAAGCC-----T-----A------G--A-----A-A--A-AAGA-CTAAAAAAT-------CT------AGCAAAAGACATTTAGTGGGA--G-G-GA-TGTACAAAAAGGAACTTAAA
gi|30521 : caGGCGCGTAGTGTGA-CATACTAAGAT---CCT-CTG--CCGAGTAATA-TTTG-----AAACCAAAGCC-----T-----T------A--AT-ATTG-A--G-AAG
gi|30522 : caGGCGCGTAGCGTGG-CATACTCAGTT---GCT-CTG--CTGAGTAACA-TGTG-----AAATCAAATTC-----T-----A------A--AG-AT---------A----TAAA------------GAT-AGAAGCAATAAAAA-ATAACAGAA--a
gi|30523 : caGCGTGTAGCGTGG-CATACTTAGTT---ACT-CTA--CTGAGTAACA-ACTG-----AAATCAAAGCA-----T-----A------A--CT-AATA-A--ACAAGG-CTAcaggg
gi|30524 : caaCGCGTAGCGTGG-CATACTCAGTT---ACT-CTG--CTGA-TAACA-TTTG----------AAAGTC-----T-----A------A--A-----G-A--A-A-----TAAA------------GAC-AGAAGAAA-AAAAAAATACAAGGA--G-A-GG-
gi|30525 : cagcGCGCGTAGCGTGGGCATATTTAGTT---ATT-CTT--CTGAGTAACA-TTTG-----AAATCAAATCCCCAAGT-----A------A--AT-ATTg
gi|30526 : catGGCGCGTAGCGTGG-CATACTCAGTTACCACT-CTG--CTGAGTAACA-TTT
gi|30527 : caGGCGGGTAGCATGG-CATACTCAGTTACCACT-CTG--CTGAGTAACA-TT
gi|30528 : caGGCGCGTAGCGTGG-CATACTCAGTTACCACT-CTG--CTCAGTAACA-TT
gi|30529 : caGGCGCATAGCGTGG-CATACTCAGTTTCCGCT-CTG--CTGAGTAACA-TT
gi|30530 : caGGTGCATAGCATGG-AATGCTCAGTT---ACC-CTG--TTGAGTGATA-TTTG-----AAAC
gi|30532 : caGGCGTGTATCGTGG-TATACTCAGAA---ACT-TTG--CAGAGTAACA-TTTT-----AAATC-GAGC------------A------A--AT-GT
gi|30533 : caGGTGCATAGTATGG-CAAACTAAGAT---ACT-CTG--TTGAGTAATA-TCAG-----AAACCAAAGCC-----T-----A------A--AT-ATTG-A--A-AAAGACTCAAAAGT-------CGAG-AGAAACAATAGAAATGTAACAGGA--G-G-GA-T-TACAGATAGGTACATAAA
gi|30534 : aGGCGCGTAGCGTTG-CATACTCAGGT---ACT-CTG--TTAAGTTATA-GTTG-----AACCCAAAGTC-----T-----A------A--AT-ATTG-A--A-AAGA-CTAAAAAGT-------CGAGAAAAAGTAATAAAAATGTATCAGGA--G-
gi|30535 : aGGCGCATAGCGTGG-CATACTCAGTT---ACCACTGTACTGAGTAACA-TT
gi|30536 : aGGCAAGTAGCATGG-CATACTCAGAT---ACT-CTG--CTGAGTAATA-TTTG-----AAACCAAAGCC-----T-----T------A--AT-ATTG-A--A-AAGG-CTAAAAAGT-------CGAG-AGAAGCAACAGAAATGTAAGAGGA--G-G-GG-T-TACAAATAGGTACATAAA
gi|30537 : GGCGCGTAGCGTGG-CATACTCAGTT---ACT-CAA--CTGAGTAACA-ATTG-----AAATCAAAGCA-----T-----A------A--AC-AATATA--A-AAAG-CT-AAAAGC-------CGAT-AGAAGCAATAAAAA
gi|30538 : GTGACGTGG-CATACTCAGTT---AAT-CTG--ATCGGTAACATTTTG-----AAATAAAATCC-----T-----A------A--ATAAATA-G--A-GAGG-CTCAAGGGTAAAACAACGAA-AGAAACAATAAAAA-ATAACAGG
gi|30539 : -CATACTCAATT---ACA-CTG--CTGAGTAACA-TTTG-----AAATTGAAGCC-----TTAC--A------A--AT-ACTG-------AGG-CAAAAAAGT-------CGAT-AGAAGCAATAGAAA---AACAGGA------GG-T-TTCTAATAGGTA
gi|30540 : GAGTAATA-TTTG-----AAACCAAAGTC-----T-----A------A--AT-ATTG-A--G-AAGA-CTAAAAAGT-------GGAG-AGAAGCAATAAAAATATATCAGGAT-G-G-TG-T-TACAAATAGGTACATAGA
gi|30541 : AATGT-------CGAG-AGAAGCAATTGAAAGGTAACAGGA--G-G-GG-T-TACAAACAGGTACATAAA
blockSeqs : G A ACC A TA T TTTTT CCAAG TATAA TAATTT TT A T GG C A AAAACAA GA TG GG T A C G
blockSeqs : . A ACC . . . . . TAC . . . . . . . . T TG G C . . G
blockSeqs : . A ACC . . . . . . . . . . . . . . G TG T . . . .
blockSeqs : . A TCC . . . . . . . . . . . . . . G TA . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . G TG . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . G TG . . . . .
blockSeqs : . T . . . . . . . . . . . . . . . G TT . . . . .
blockSeqs : . T . . . . . . . . . . . . . . . T TT . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . T TT . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . G AA . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . T TG . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . C TG . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . G TG . . . . .
blockSeqs : . T . . . . . . . . . . . . . . . G TA . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . T GG . . . . .
blockSeqs : . T . . . . . . . . . . . . . . . A A . . . .
blockSeqs : . T . . . . . . . . . . . . . . . T A . .
blockSeqs : . T . . . . . . . . . . . . . . . G . .
blockSeqs : . T . . . . . . . . . . . . . . . G .
blockSeqs : . T . . . . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . . . .
blockSeqs : . A . . . . . . . . . . . . .
blockSeqs : . A . . . . . . . . . .
blockSeqs : . G . . . . . . . . . .
blockSeqs : . T . . . . .
blockSeqs : . A . . . .
blockSeqs : . T . . . .
blockSeqs : . T . . . .
blockSeqs : . T . . . .
blockSeqs : .
blockSeqCons : **
originalCons : GGCGCGTAGCGTGG-CATACTCAGNT---ACT-CTG--CTGAGTAACA-TTTG-----AAACCAAAGCC-----T-----A------A--AT-ATTG-A--A-AAGG-CTAAAAAGT-------CGAG-AGAAGCAATAGAAATGTAACAGGA--G-G-GG-T-TACAAATAGGTACATAAA
finalCons : GGCGCGTAGCGTGG-CATACTCAGNT---ACT-CTG--CTGAGTAACA-TTTG-----AAACCAAAGCC-----T-----A------A--AT-ATTG-A--A-AAGG-CTAAAAAGT-------CGAG-AGAAGCAATAGAAATGTAACAGGA--G-G-GG-T-TACAAATAGGTACATAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30531 ): CAGGTGCCTAGCATGTCATTCTCAGTTACTCTACTGAGTCACGTGTTGAAATCAAAG
Alignments
lowQualScore : 1 1 888 1 11 1 33333 33333 66666 444444 22 1 1 22 1 1 5555555 22 33 99 4 2 2 5
lowQualScore : . . ... . .. . ..... ..... ..... ...... .. . . .. . . ....... .. .. .. . . . .
lowQualScore : 2 0 555 2 77 2 44444 66666 11111 111111 00 4 5 11 5 8 9999999 22 55 22 4 4 4 0
consensus : GGCGCGTAGCGTGG-CATACTCAGNT---ACT-CTG--CTGAGTAACA-TTTG-----AAACCAAAGCC-----T-----A------A--AT-ATTG-A--A-AAGG-CTAAAAAGT-------CGAG-AGAAGCAATAGAAATGTAACAGGA--G-G-GG-T-TACAAATAGGTACATAAA
Reference ( family-570 ) : GGCGCGTAGCGTGG-CATACTCAGNT---ACT-CTG--CTGAGTAACA-TTTG-----AAACCAAAGCC-----T-----A------A--AT-ATTG-A--A-AAGG-CTAAAAAGT-------CGAG-AGAAGCAATAGAAATGTAACAGGA--G-G-GG-T-TACAAATAGGTACATAAA
gi|30506 : GGCGCGTAGCATGG-TATACTCAGAT---ACT-CTG--CTGAGTAATA-TTGG-----AAATCAGAGCC-----T-----G------A--AT-ATTG-A--A-AAGG-GTCGAAAGT-------CGAG-AGAAGCAGTAGAAATGTAACAGGAG-G-G-GG-T-TACAAATAGGTACATA
gi|30507 : caGACGCGTAGAGTGG-CATACTCAGAT---ACT-CTG--CTGAGTAATA-TTTG-----AAACCAAAGTA-----T-----A------A--AT-ATTG-A--A-AGAA-CTAAAAAGT-------CAAT-AGAAGCAAGAGAAATGTAACAGGA--GTG-GG-T-TACAAATAGGTACATAAA
gi|30508 : caGGTGCGAAGCGTTG-CATACTCAGAC---ACT-CTG--CTGAGTGATA-TTTA-----AAACCAAGGCC-----T-----A------A--AA-ATTG-A--A-AAGA-CTAAAAAGC-------CGAG-AGAAGCAATAAAAATGTAACAGGA--G-GAGG-T-TATAAATAGGTACATAAA
gi|30509 : caGCGCGTAGTATGG-CATACTCAGAT---ACT-TTG--TCGAGTAATA-TTTG-----CAACCAAAGCC-----T-----A------A--AT-GTTG-A--A-AAGG-GTAAAAGGT-------CCAG-AGAAGCAATAGAAATGTAACAGGA--G-G-GG-T-TGCAATTAGGTACATAAA
gi|30510 : caaGGCGTGTAGTGTGT-CATACTCAGAC---ACT-CTG--CTGAGTAATA-CTTG-----A--CCAAAGCC-----T-----A------A--GT-ATTG-A--A-AATA-CTAAAAAGT-------TGAG-AGAAGCAATAGAAATACAATAGGAGGG-G-GG-T-TACAAATAGGTACATAGA
gi|30511 : caGCGCGTATAGTTG-TTTTCTCAGAA---ACT-CTC--CTGAGTAATA-TTTG-----AAACCAAAGCA-----T-----A------A--AT-ACTG-AGGA-AAAA-ATAAAAAGT-------CGAG-AGAAGCAATAGAAATGTAACAGGA--G-G-GGCT-TCCGAATAGGTACATAAA
gi|30512 : caaGGCGCGTAGGCTGG-CATACACAAAT---ACT-CTG--CTGACTTATA-CTTG-----AAATCAAAGCC-----------A------A--AT-ATCG-A--A-AAGA-CTTAAAAGT-------CGAG-AGAAGCAACATATATGTAACAGGA--GCG-AA-G-TATAAGCAGGTACATAAA
gi|30513 : caCGCGTGGCGTGG-CAAACTCAGTT---ACT-CTG--GTGAGCAACA-TTTG-----AAATCAAAGC-------------------------ATTC-A--A-AGGA-TTAAAGAAT-------CGAT-AGAAGCAATAGACATTTAATAGGA--G-G-GG-TGTTCAAATATGTACTTAAA
gi|30514 : cagtGGCGCGTAGCGTGG-CATACTCAGTT---ACT-CTG--CTGAGTAACA-TTTATTTTTAAATTGACGCC-----TTATAAA------A--AT-A----A--A-TAAG-CTAAAAGGT-------CAAT-AGAAGCAATAGAAA---AACAGGA--A-G-GG---TACAAATAGGTA
gi|30515 : caGACGAGTAGCGTGG-CATACTCAGAT---ACT-CTG--CTGAGTAACA-TTTG-----AAACCAAAGCC-----T-----A------A--AT-ATTG-A--A-AA
gi|30516 : caGACGAGTAGCGTGG-CATACTCAGAT---ACT-CTG--CTGAGTAACA-TTTG-----AAACCAAAGCC-----T-----A------A--AT-ATTG-A--A-AA
gi|30517 : caGGCGCGTAGCGTGG-CATACTCAGAT---ACT-CTG--CTGAGTAATA-TTGG-----AAACCAAAGCC-----A-----A------A--AT-ATTA-A--A-AA
gi|30518 : caGACACGTTGCATGG-CATACTCAGAT---ACT-CTG--CTGAGTAATA-TTTG-----AAACTATAGCC-----T-----A------A--AT-ATTG-A--A-AAGG--TAATAAGT-------
gi|30519 : caGGCGCGTAGCGT----------AGAT--------------GAGTATTA-TAGG-----AAACCAAAGCC-----T-----ATAATTTATTAT-ATTG-A--A-AATA-CTAAAAAAC-------CGAG-AGAAGTAATAGAAATTTAACAAGAG-G-G-GG-T-TACAAATATATACATAAA
gi|30520 : caGACGCGTAGCATGG-CATATTCAATT---ACT-CTC--CTGAATTACA-TTTG-----AAATCAAAGCC-----T-----A------G--A-----A-A--A-AAGA-CTAAAAAAT-------CT------AGCAAAAGACATTTAGTGGGA--G-G-GA-TGTACAAAAAGGAACTTAAA
gi|30521 : caGGCGCGTAGTGTGA-CATACTAAGAT---CCT-CTG--CCGAGTAATA-TTTG-----AAACCAAAGCC-----T-----T------A--AT-ATTG-A--G-AAG
gi|30522 : caGGCGCGTAGCGTGG-CATACTCAGTT---GCT-CTG--CTGAGTAACA-TGTG-----AAATCAAATTC-----T-----A------A--AG-AT---------A----TAAA------------GAT-AGAAGCAATAAAAA-ATAACAGAA--a
gi|30523 : caGCGTGTAGCGTGG-CATACTTAGTT---ACT-CTA--CTGAGTAACA-ACTG-----AAATCAAAGCA-----T-----A------A--CT-AATA-A--ACAAGG-CTAcaggg
gi|30524 : caaCGCGTAGCGTGG-CATACTCAGTT---ACT-CTG--CTGA-TAACA-TTTG----------AAAGTC-----T-----A------A--A-----G-A--A-A-----TAAA------------GAC-AGAAGAAA-AAAAAAATACAAGGA--G-A-GG-
gi|30525 : cagcGCGCGTAGCGTGGGCATATTTAGTT---ATT-CTT--CTGAGTAACA-TTTG-----AAATCAAATCCCCAAGT-----A------A--AT-ATTg
gi|30526 : catGGCGCGTAGCGTGG-CATACTCAGTTACCACT-CTG--CTGAGTAACA-TTT
gi|30527 : caGGCGGGTAGCATGG-CATACTCAGTTACCACT-CTG--CTGAGTAACA-TT
gi|30528 : caGGCGCGTAGCGTGG-CATACTCAGTTACCACT-CTG--CTCAGTAACA-TT
gi|30529 : caGGCGCATAGCGTGG-CATACTCAGTTTCCGCT-CTG--CTGAGTAACA-TT
gi|30530 : caGGTGCATAGCATGG-AATGCTCAGTT---ACC-CTG--TTGAGTGATA-TTTG-----AAAC
gi|30532 : caGGCGTGTATCGTGG-TATACTCAGAA---ACT-TTG--CAGAGTAACA-TTTT-----AAATC-GAGC------------A------A--AT-GT
gi|30533 : caGGTGCATAGTATGG-CAAACTAAGAT---ACT-CTG--TTGAGTAATA-TCAG-----AAACCAAAGCC-----T-----A------A--AT-ATTG-A--A-AAAGACTCAAAAGT-------CGAG-AGAAACAATAGAAATGTAACAGGA--G-G-GA-T-TACAGATAGGTACATAAA
gi|30534 : aGGCGCGTAGCGTTG-CATACTCAGGT---ACT-CTG--TTAAGTTATA-GTTG-----AACCCAAAGTC-----T-----A------A--AT-ATTG-A--A-AAGA-CTAAAAAGT-------CGAGAAAAAGTAATAAAAATGTATCAGGA--G-
gi|30535 : aGGCGCATAGCGTGG-CATACTCAGTT---ACCACTGTACTGAGTAACA-TT
gi|30536 : aGGCAAGTAGCATGG-CATACTCAGAT---ACT-CTG--CTGAGTAATA-TTTG-----AAACCAAAGCC-----T-----T------A--AT-ATTG-A--A-AAGG-CTAAAAAGT-------CGAG-AGAAGCAACAGAAATGTAAGAGGA--G-G-GG-T-TACAAATAGGTACATAAA
gi|30537 : GGCGCGTAGCGTGG-CATACTCAGTT---ACT-CAA--CTGAGTAACA-ATTG-----AAATCAAAGCA-----T-----A------A--AC-AATATA--A-AAAG-CT-AAAAGC-------CGAT-AGAAGCAATAAAAA
gi|30538 : GTGACGTGG-CATACTCAGTT---AAT-CTG--ATCGGTAACATTTTG-----AAATAAAATCC-----T-----A------A--ATAAATA-G--A-GAGG-CTCAAGGGTAAAACAACGAA-AGAAACAATAAAAA-ATAACAGG
gi|30539 : -CATACTCAATT---ACA-CTG--CTGAGTAACA-TTTG-----AAATTGAAGCC-----TTAC--A------A--AT-ACTG-------AGG-CAAAAAAGT-------CGAT-AGAAGCAATAGAAA---AACAGGA------GG-T-TTCTAATAGGTA
gi|30540 : GAGTAATA-TTTG-----AAACCAAAGTC-----T-----A------A--AT-ATTG-A--G-AAGA-CTAAAAAGT-------GGAG-AGAAGCAATAAAAATATATCAGGAT-G-G-TG-T-TACAAATAGGTACATAGA
gi|30541 : AATGT-------CGAG-AGAAGCAATTGAAAGGTAACAGGA--G-G-GG-T-TACAAACAGGTACATAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|30531 ): CAGGTGCCTAGCATGTCATTCTCAGTTACTCTACTGAGTCACGTGTTGAAATCAAAG