lowQualScore : 0 3
lowQualScore : . .
lowQualScore : 2 6
consensus : ATAGATAAAANATACTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
Reference ( gi|37882 ) : ATAGATGAAAGATACTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37891 : ATAGATGAAAGATACTTACCTAAGTGCTCCAACTGTGGCAGATAGATAAAATATAC
gi|37890 : ATAGATGAAAGATACTTACTTAGGTGCTCCAACTATGGCAGATGGATAAAATATAC
gi|37889 : ATAGATGAAAGATACTTACCTAAGTGCTCCAACTGTGGCAGATAGATAAAATATAC
gi|37895 : ATAGATGAAAGATACTTACCTAGGTGTTCCACCTGTGGCAGATGGATAAAATATAC
gi|37894 : ATAGATGAAAGATACTTACCTAGGTGTTCCACCTGTGGCAGATGGATAAAATATAC
gi|37877 : ATAGATAAAATATACTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37876 : ATAGATAAAATATACTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37875 : ATAGATAAAATATACTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37885 : ATAGATAAAAGATACTTACCTAGGTGCTCCAACTGTGGCTGATGGATAAAATATAC
gi|37886 : ACAGATAAAAGATACTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATAT
gi|37887 : ATAGATAAAAGATACTTACCTAAGTGCTCCACCTGTGGCAGATGGATAAAATATAC
gi|37878 : ATAGATAAAATATACTTACCTAGGGGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37880 : ATAGATAAAATATACTTACCTAGGTGCTCCAACTGTGGCTGATGGATAAAATATAC
gi|37879 : ATAGATAAAATATACTAACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37881 : ATAGATAAAATACACTTACCTAGGTGCTCCACCTGTGGCAGATGGATAAAATATAC
gi|37883 : ATAGATAAAATATACTTACGTAGGTGCTCCAGCTGTGGCAGATGGATAAAATATAC
gi|37884 : ATAGATAAAATATACTAACCTAGGTGCTCCAACTGTGGCAGATAGATAAAATATAC
gi|37888 : ATAGATAAAATATACTTACCTTAGTGCTCCAACTGTGGCTGATGGATAAAATATAC
gi|37900 : ATAGATAAAAGATACTTACTTAGGTGCTCCAACTGTTGCAGATAGATACAATACAC
gi|37892 : ATAGATAAAATATACTTACCTAGGTGCTTCAACTGTGACAGATAGATAATATATAC
gi|37893 : ATAGATAAAATATACTTACCTAGCAGCTCCAACTGTGGCTGATGGATAAAATATAC
gi|37904 : ATAGATGAAAGATACTTACCTAAGTGCTCCAACTGTAGCAGACGGAT
gi|37896 : ATACATAAAATATACTTACCTAGGTGCTCCAACTGTAGCTGATGGATAAAATATA
gi|37898 : ATATNNNNNNNNNNCTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37897 : atggataaaATAGATAAAATATACTTACCTAAGTGCTCCAACTGCAGCAGATACATAAAATATAC
gi|37901 : ATAGATGAAATATACTTAACTATGTGCTCCAACTGTGGCAGATATATAAAACATAC
gi|37902 : ATAAATGAAATATACTTACCTAGGTGTTCATACTGTGGCAGATGGTTAAAATATAC
gi|37903 : ATATATAAAACATACTTACCCAGGTGCTCTAAATGTGGCAGATAGATAAAATACAC
gi|37899 : ATAAATAAAATATACTTAACTAGGTGCTCCAACTGTGGCAGTAGGATAAAATAT
gi|37905 : TAGATGGAAGATACTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37906 : TAGACGGAAGATACTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37907 : TAGATGGAAGATACTTACCTAGGTGCTCCACCTGTGGCAGATGGATAAAATATAC
gi|37908 : TAGATGGAAGATACTTACCTAGGTGCTCCAACTGTGGCTGATGGATATAATATA
gi|37909 : TACATAAAAGATACTTACGTAGGTGCTCCAACTGTGGCTGATGGATACAA
gi|37910 : AAAAATACTTACCTAGGTGCTCCAACTGTGGCATATATTTAAAATATAC
gi|37911 : atTAAGTGCTCTAACTGTGGCAAATAGATGAAATATAC
Alignments
lowQualScore : 2 444444444
lowQualScore : . .........
lowQualScore : 1 444444444
consensus : ATAGATAAAANATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
Reference ( family-567 ) : ATAGATAAAANATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37875 : ATAGATAAAATATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37876 : ATAGATAAAATATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37877 : ATAGATAAAATATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37878 : ATAGATAAAATATA---------CTTACCTAGGGGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37879 : ATAGATAAAATATA---------CTAACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37880 : ATAGATAAAATATA---------CTTACCTAGGTGCTCCAACTGTGGCTGATGGATAAAATATAC
gi|37881 : ATAGATAAAATACA---------CTTACCTAGGTGCTCCACCTGTGGCAGATGGATAAAATATAC
gi|37882 : ATAGATGAAAGATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37883 : ATAGATAAAATATA---------CTTACGTAGGTGCTCCAGCTGTGGCAGATGGATAAAATATAC
gi|37884 : ATAGATAAAATATA---------CTAACCTAGGTGCTCCAACTGTGGCAGATAGATAAAATATAC
gi|37885 : ATAGATAAAAGATA---------CTTACCTAGGTGCTCCAACTGTGGCTGATGGATAAAATATAC
gi|37886 : ACAGATAAAAGATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATAT
gi|37887 : ATAGATAAAAGATA---------CTTACCTAAGTGCTCCACCTGTGGCAGATGGATAAAATATAC
gi|37888 : ATAGATAAAATATA---------CTTACCTTAGTGCTCCAACTGTGGCTGATGGATAAAATATAC
gi|37889 : ATAGATGAAAGATA---------CTTACCTAAGTGCTCCAACTGTGGCAGATAGATAAAATATAC
gi|37890 : ATAGATGAAAGATA---------CTTACTTAGGTGCTCCAACTATGGCAGATGGATAAAATATAC
gi|37891 : ATAGATGAAAGATA---------CTTACCTAAGTGCTCCAACTGTGGCAGATAGATAAAATATAC
gi|37892 : ATAGATAAAATATA---------CTTACCTAGGTGCTTCAACTGTGACAGATAGATAATATATAC
gi|37893 : ATAGATAAAATATA---------CTTACCTAGCAGCTCCAACTGTGGCTGATGGATAAAATATAC
gi|37894 : ATAGATGAAAGATA---------CTTACCTAGGTGTTCCACCTGTGGCAGATGGATAAAATATAC
gi|37895 : ATAGATGAAAGATA---------CTTACCTAGGTGTTCCACCTGTGGCAGATGGATAAAATATAC
gi|37896 : ATACATAAAATATA---------CTTACCTAGGTGCTCCAACTGTAGCTGATGGATAAAATATA
gi|37897 : ATAGATAAAATATA---------CTTACCTAAGTGCTCCAACTGCAGCAGATACATAAAATATAC
gi|37898 : ATGGATAAAATATNNNNNNNNNNCTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37899 : ATAAATAAAATATA---------CTTAACTAGGTGCTCCAACTGTGGCAGTAGGATAAAATAT
gi|37900 : ATAGATAAAAGATA---------CTTACTTAGGTGCTCCAACTGTTGCAGATAGATACAATACAC
gi|37901 : ATAGATGAAATATA---------CTTAACTATGTGCTCCAACTGTGGCAGATATATAAAACATAC
gi|37902 : ATAAATGAAATATA---------CTTACCTAGGTGTTCATACTGTGGCAGATGGTTAAAATATAC
gi|37903 : ATATATAAAACATA---------CTTACCCAGGTGCTCTAAATGTGGCAGATAGATAAAATACAC
gi|37904 : ATAGATGAAAGATA---------CTTACCTAAGTGCTCCAACTGTAGCAGACGGAT
gi|37905 : TAGATGGAAGATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37906 : TAGACGGAAGATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37907 : TAGATGGAAGATA---------CTTACCTAGGTGCTCCACCTGTGGCAGATGGATAAAATATAC
gi|37908 : TAGATGGAAGATA---------CTTACCTAGGTGCTCCAACTGTGGCTGATGGATATAATATA
gi|37909 : TACATAAAAGATA---------CTTACGTAGGTGCTCCAACTGTGGCTGATGGATACAA
gi|37910 : ATAAAA-ATA---------CTTACCTAGGTGCTCCAACTGTGGCATATATTTAAAATATAC
gi|37911 : TAAGTGCTCTAACTGTGGCAAATAGATGAAATATAC
Alignments
lowQualScore : 2 444444444
lowQualScore : . .........
lowQualScore : 1 444444444
consensus : ATAGATAAAANATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
Reference ( family-567 ) : ATAGATAAAANATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37875 : ATAGATAAAATATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37876 : ATAGATAAAATATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37877 : ATAGATAAAATATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37878 : ATAGATAAAATATA---------CTTACCTAGGGGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37879 : ATAGATAAAATATA---------CTAACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37880 : ATAGATAAAATATA---------CTTACCTAGGTGCTCCAACTGTGGCTGATGGATAAAATATAC
gi|37881 : ATAGATAAAATACA---------CTTACCTAGGTGCTCCACCTGTGGCAGATGGATAAAATATAC
gi|37882 : ATAGATGAAAGATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37883 : ATAGATAAAATATA---------CTTACGTAGGTGCTCCAGCTGTGGCAGATGGATAAAATATAC
gi|37884 : ATAGATAAAATATA---------CTAACCTAGGTGCTCCAACTGTGGCAGATAGATAAAATATAC
gi|37885 : ATAGATAAAAGATA---------CTTACCTAGGTGCTCCAACTGTGGCTGATGGATAAAATATAC
gi|37886 : ACAGATAAAAGATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATAT
gi|37887 : ATAGATAAAAGATA---------CTTACCTAAGTGCTCCACCTGTGGCAGATGGATAAAATATAC
gi|37888 : ATAGATAAAATATA---------CTTACCTTAGTGCTCCAACTGTGGCTGATGGATAAAATATAC
gi|37889 : ATAGATGAAAGATA---------CTTACCTAAGTGCTCCAACTGTGGCAGATAGATAAAATATAC
gi|37890 : ATAGATGAAAGATA---------CTTACTTAGGTGCTCCAACTATGGCAGATGGATAAAATATAC
gi|37891 : ATAGATGAAAGATA---------CTTACCTAAGTGCTCCAACTGTGGCAGATAGATAAAATATAC
gi|37892 : ATAGATAAAATATA---------CTTACCTAGGTGCTTCAACTGTGACAGATAGATAATATATAC
gi|37893 : ATAGATAAAATATA---------CTTACCTAGCAGCTCCAACTGTGGCTGATGGATAAAATATAC
gi|37894 : ATAGATGAAAGATA---------CTTACCTAGGTGTTCCACCTGTGGCAGATGGATAAAATATAC
gi|37895 : ATAGATGAAAGATA---------CTTACCTAGGTGTTCCACCTGTGGCAGATGGATAAAATATAC
gi|37896 : ATACATAAAATATA---------CTTACCTAGGTGCTCCAACTGTAGCTGATGGATAAAATATA
gi|37897 : ATAGATAAAATATA---------CTTACCTAAGTGCTCCAACTGCAGCAGATACATAAAATATAC
gi|37898 : ATGGATAAAATATNNNNNNNNNNCTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37899 : ATAAATAAAATATA---------CTTAACTAGGTGCTCCAACTGTGGCAGTAGGATAAAATAT
gi|37900 : ATAGATAAAAGATA---------CTTACTTAGGTGCTCCAACTGTTGCAGATAGATACAATACAC
gi|37901 : ATAGATGAAATATA---------CTTAACTATGTGCTCCAACTGTGGCAGATATATAAAACATAC
gi|37902 : ATAAATGAAATATA---------CTTACCTAGGTGTTCATACTGTGGCAGATGGTTAAAATATAC
gi|37903 : ATATATAAAACATA---------CTTACCCAGGTGCTCTAAATGTGGCAGATAGATAAAATACAC
gi|37904 : ATAGATGAAAGATA---------CTTACCTAAGTGCTCCAACTGTAGCAGACGGAT
gi|37905 : TAGATGGAAGATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37906 : TAGACGGAAGATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37907 : TAGATGGAAGATA---------CTTACCTAGGTGCTCCACCTGTGGCAGATGGATAAAATATAC
gi|37908 : TAGATGGAAGATA---------CTTACCTAGGTGCTCCAACTGTGGCTGATGGATATAATATA
gi|37909 : TACATAAAAGATA---------CTTACGTAGGTGCTCCAACTGTGGCTGATGGATACAA
gi|37910 : ATAAAA-ATA---------CTTACCTAGGTGCTCCAACTGTGGCATATATTTAAAATATAC
gi|37911 : TAAGTGCTCTAACTGTGGCAAATAGATGAAATATAC
blockSeqs : T NNNNNNNNN
blockSeqs : T .
blockSeqs : T .
blockSeqs : T .
blockSeqs : T .
blockSeqs : T .
blockSeqs : G .
blockSeqs : T .
blockSeqs : T .
blockSeqs : G .
blockSeqs : G .
blockSeqs : G .
blockSeqs : T .
blockSeqs : G .
blockSeqs : G .
blockSeqs : G .
blockSeqs : T .
blockSeqs : T .
blockSeqs : G .
blockSeqs : G .
blockSeqs : T .
blockSeqs : T .
blockSeqs : T .
blockSeqs : T .
blockSeqs : G .
blockSeqs : T .
blockSeqs : T .
blockSeqs : C .
blockSeqs : G .
blockSeqs : G .
blockSeqs : G .
blockSeqs : G .
blockSeqs : G .
blockSeqs : G .
blockSeqs : . .
blockSeqCons :
originalCons : ATAGATAAAANATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
finalCons : ATAGATAAAANATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
Alignments
lowQualScore : 2 444444444
lowQualScore : . .........
lowQualScore : 1 444444444
consensus : ATAGATAAAANATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
Reference ( family-567 ) : ATAGATAAAANATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37875 : ATAGATAAAATATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37876 : ATAGATAAAATATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37877 : ATAGATAAAATATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37878 : ATAGATAAAATATA---------CTTACCTAGGGGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37879 : ATAGATAAAATATA---------CTAACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37880 : ATAGATAAAATATA---------CTTACCTAGGTGCTCCAACTGTGGCTGATGGATAAAATATAC
gi|37881 : ATAGATAAAATACA---------CTTACCTAGGTGCTCCACCTGTGGCAGATGGATAAAATATAC
gi|37882 : ATAGATGAAAGATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37883 : ATAGATAAAATATA---------CTTACGTAGGTGCTCCAGCTGTGGCAGATGGATAAAATATAC
gi|37884 : ATAGATAAAATATA---------CTAACCTAGGTGCTCCAACTGTGGCAGATAGATAAAATATAC
gi|37885 : ATAGATAAAAGATA---------CTTACCTAGGTGCTCCAACTGTGGCTGATGGATAAAATATAC
gi|37886 : ACAGATAAAAGATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATAT
gi|37887 : ATAGATAAAAGATA---------CTTACCTAAGTGCTCCACCTGTGGCAGATGGATAAAATATAC
gi|37888 : ATAGATAAAATATA---------CTTACCTTAGTGCTCCAACTGTGGCTGATGGATAAAATATAC
gi|37889 : ATAGATGAAAGATA---------CTTACCTAAGTGCTCCAACTGTGGCAGATAGATAAAATATAC
gi|37890 : ATAGATGAAAGATA---------CTTACTTAGGTGCTCCAACTATGGCAGATGGATAAAATATAC
gi|37891 : ATAGATGAAAGATA---------CTTACCTAAGTGCTCCAACTGTGGCAGATAGATAAAATATAC
gi|37892 : ATAGATAAAATATA---------CTTACCTAGGTGCTTCAACTGTGACAGATAGATAATATATAC
gi|37893 : ATAGATAAAATATA---------CTTACCTAGCAGCTCCAACTGTGGCTGATGGATAAAATATAC
gi|37894 : ATAGATGAAAGATA---------CTTACCTAGGTGTTCCACCTGTGGCAGATGGATAAAATATAC
gi|37895 : ATAGATGAAAGATA---------CTTACCTAGGTGTTCCACCTGTGGCAGATGGATAAAATATAC
gi|37896 : ATACATAAAATATA---------CTTACCTAGGTGCTCCAACTGTAGCTGATGGATAAAATATA
gi|37897 : ATAGATAAAATATA---------CTTACCTAAGTGCTCCAACTGCAGCAGATACATAAAATATAC
gi|37898 : ATGGATAAAATATNNNNNNNNNNCTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37899 : ATAAATAAAATATA---------CTTAACTAGGTGCTCCAACTGTGGCAGTAGGATAAAATAT
gi|37900 : ATAGATAAAAGATA---------CTTACTTAGGTGCTCCAACTGTTGCAGATAGATACAATACAC
gi|37901 : ATAGATGAAATATA---------CTTAACTATGTGCTCCAACTGTGGCAGATATATAAAACATAC
gi|37902 : ATAAATGAAATATA---------CTTACCTAGGTGTTCATACTGTGGCAGATGGTTAAAATATAC
gi|37903 : ATATATAAAACATA---------CTTACCCAGGTGCTCTAAATGTGGCAGATAGATAAAATACAC
gi|37904 : ATAGATGAAAGATA---------CTTACCTAAGTGCTCCAACTGTAGCAGACGGAT
gi|37905 : TAGATGGAAGATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37906 : TAGACGGAAGATA---------CTTACCTAGGTGCTCCAACTGTGGCAGATGGATAAAATATAC
gi|37907 : TAGATGGAAGATA---------CTTACCTAGGTGCTCCACCTGTGGCAGATGGATAAAATATAC
gi|37908 : TAGATGGAAGATA---------CTTACCTAGGTGCTCCAACTGTGGCTGATGGATATAATATA
gi|37909 : TACATAAAAGATA---------CTTACGTAGGTGCTCCAACTGTGGCTGATGGATACAA
gi|37910 : ATAAAA-ATA---------CTTACCTAGGTGCTCCAACTGTGGCATATATTTAAAATATAC
gi|37911 : TAAGTGCTCTAACTGTGGCAAATAGATGAAATATAC