lowQualScore : 11111111
lowQualScore : 5555555 22222222 11 2222 1 66 111 2 1
lowQualScore : ....... ........ .. .... . .. ... . .
lowQualScore : 7777777 99999999 44 2222 0 55 888 1 1
consensus : TAATAGTT-----AGTGTTCATT---N----AGT--A----AA-AATTTAACA---A-TTAAGAAACCCAAAG-GGAGCGAC
Reference ( gi|59421 ) : TAATAGCT-----AGTGTTCATT---T----AGT--A----AA-AATTTAACA---A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59419 : TAATAGTT-----AGTGTTCATT---T----AGT--A----AA-AAAATAACA---A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59420 : TAATAGTT-----AGTGTTCATT---T----AGT--A----AA-AAAT-AACA---A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59422 : TAATAGTT-----AATGTTCATT---T----AGT--A----AA-AATTTAACA---A-TTAAGAACCCAAAAG-GGAGCGAC
gi|59425 : TAGTAGTT-----AGTGTTCATT---A----AGT--A----AA-AATTTAACA---A-TTAAGAAACACAAAG-TGAGCGAC
gi|59426 : TAATAGTT-----GGTGATCATT---T----AGC--A----AA-AATTTAACA---A-TTAAGCAACCCAGAG-GGAGCGAC
gi|59427 : TAATAGTG-----AGTGTTCATT---T----AGT--T----CA-AATTAAACA---A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59429 : TAA-AGTT-----AGTGTTCATT---A----AGT--A----AA-AAATTAACA---A-TTAAGAAACCCAAAG-AGAGCGAC
gi|59430 : TAATAGTT-----ATTGTTCATT---T----AGT--A----AA-CATTTAACA---A-TTAAGAAACCCAAAG-GGA
gi|59423 : TAATAGTT-----AGAGTTCATT---T----AGT--A----AA-AAAATAACA---A-TTAAGAAACACAAAG-GGAGCGA
gi|59431 : TGATAGTT-----TGTGTTCATT---T----ACT--A----AA-TACTTAACA---A-TTAAGAAACCCAAAG-GGAGCAAC
gi|59424 : TAAAAGTT-----AGTGTTCATT---T----AGT--A----AA-AAAATAACC---A-TTAAAAACCCCAAAG-GGAGCGAC
gi|59434 : TAATAGTT-----AGTGTTCATT---A----AGT--A----AA-AGTTGAATG---A-TTAAGAAACGCAAAG-GCAGCGAC
gi|59428 : TAATAGTA-----AGGGTTCATT---T----TGT--A----AA-AAAATAACA---A-TTTAGAAACCCAAAG-GGAGCGAC
gi|59433 : TAGTAGTT-----AGTGTTCATT--------AGT--A----CA-AAATTAACA---A-TTGAGAAACCCAAAG-GGAG
gi|59438 : TAATAGTA-----AGTGTTTATT---A----AGT--A----AA-AATTCAACA---A-TTAAGAAACAAAAAG-TGAGCAAC
gi|59439 : TAATAGTTCATAAAGTGCTCAGT---A----AGT--A----AA-CATTTAACA---A-TTAAGAAACCCAAAG-GGAACTAC
gi|59440 : TAATTGTA-----AGTATTCATT---A----AGT--A----AA-AAATTAACA---A-TTAAGTAACCCAGAG-GAAGCGAC
gi|59432 : TAATAGTT-----AGAGTTCATTAAGT----AAT--A----AA-AAT--AATA---A-TTAAGAAACCCAAAG-GTAACGAC
gi|59437 : TAATAGTA-----AGTGTTCATT---A----AGT--A----AA-TATGTATCA---A-TTAAGAAACCCAAAG-GG
gi|59435 : TAATAGTA-----AGTATCGATT---T----TGT--A----AAGAAAATAACA---A-TTAAGAAACCCAAAG-GGAGCGA
gi|59443 : TAATAGTA-----AATGTTTATT---A----AGT--A----AA-TATTTAACA---A-TTAAGAAACTCAAAT-TGAGCAA
gi|59441 : TAATAGTT-----A-TATTCATT---A----AGT--G----AA-AA---AACA---AATTAAGAAACCCCAAG-GGAGCGAC
gi|59445 : TAATAGTA-----AGTGTTCATT---A----AGT--A----AA-AAATTAGCA---A-TTAAGAAACACAAAA-
gi|59442 : TAATACTT-----AGTGGCCAAT---A----AGT--T----AA-AAAGTAACA---A-TTAAGAAACCCAAAG-GGAGC
gi|59444 : TAATAGCT-----AGTGTTCATT--------AAC--A----AA-AA---AAAATAGA-TTAATAAACCCAAAG-GAAGCGA
gi|59446 : AACAGTA-----AGTTTTCATT---A----AGT--A----AA-AAAATAACA---A-TTAAGAAACTGAAAG-GGAGCGA
gi|59447 : ATAGTT-----GGTGTTCATT---T----TATCTA----AA-AATTTAAAA---A-TTAAGAAACCTAAAG-GGAGCGAC
gi|59450 : TAGTT-----AGTGTTCATT---T----AGT--A----AA-GAATTGATA---G-TTAAGAAACCC--AG-GGA
gi|59448 : TAGTT-----AGTGT-CATT---TT---AGT--ACTGAAA-AATATAACA---C-TTAAGAAACCCAAAACGGAGCGAC
gi|59451 : AGTT-----AGTGTTCATT---A----AAT--A----AA-AAAATAACA---A-TTAAGAAATCCAAAG-TGAGCGAC
gi|59453 : AGTT-----AGGGTTCATT---A----AGT--A----AA-AATTTAACA---G-TTAAGAAACCC
gi|59454 : AGTT-----AGTTTCCATT---A----AGT--T----AA-AATATAACA---A-TTAAGAAACCC
gi|59455 : T-----AGTGTTCATT---A----AGT--A----AA-TATTTAACA---A-TTAAGAAACCCAAAG-AGAGCAAC
gi|59456 : tT-----AGCGTTCATT---T----AGT--A----AA-AATTTAACA---A-TTAAGAAACGCAAAG-GCAGC
gi|59449 : T-----AGTGTTTATTA--TGCAAAAT--A----AA-A---TAGCA---A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59452 : tagtga-----AGTGTTCATT---A----AGT--A----AA-AATTTAACA---A-TTAAATAACCCAAAG-GGAGCGAC
gi|59457 : agta-----AGTGTTCACT---A----AGT--A----AA-AATGTTACC---A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59458 : -----AGTGTTCATT---A----AGT--A----AA-AATTAAACA---A-TTAAAAAATCCAAAG-GGAACG
gi|59436 : -----AGTGTTCATT---A----AGT--A----AA-AATA-AATA---AATTAAGAAACCCAAAG-GGAGCGA
Alignments
lowQualScore : 11 22222 33 11 2222 1 1 11 66 1 2 1
lowQualScore : .. ..... .. .. .... . . .. .. . . .
lowQualScore : 44 55555 00 44 1111 0 0 44 11 0 0 1
consensus : TAATAGT--T-----AGTGTTCATTA-AGT--A----A-A-A--ANTTAACA-A-TTAAGAAACCCAAAG-GGAGCGAC
Reference ( family-543 ) : TAATAGT--T-----AGTGTTCATTN-AGT--A----A-A-A--ATTTAACA-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59419 : TAATAGT--T-----AGTGTTCATTT-AGT--A----A-A-A--AAATAACA-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59420 : TAATAGT--T-----AGTGTTCATTT-AGT--A----A-A-A--AAT-AACA-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59421 : TAATAGC--T-----AGTGTTCATTT-AGT--A----A-A-A--ATTTAACA-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59422 : TAATAGT--T-----AATGTTCATTT-AGT--A----A-A-A--ATTTAACA-A-TTAAGAACCCAAAAG-GGAGCGAC
gi|59423 : TAATAGT--T-----AGAGTTCATTT-AGT--A----A-A-A--AAATAACA-A-TTAAGAAACACAAAG-GGAGCGA
gi|59424 : TAAAAGT--T-----AGTGTTCATTT-AGT--A----A-A-A--AAATAACC-A-TTAAAAACCCCAAAG-GGAGCGAC
gi|59425 : TAGTAGT--T-----AGTGTTCATTA-AGT--A----A-A-A--ATTTAACA-A-TTAAGAAACACAAAG-TGAGCGAC
gi|59426 : TAATAGT--T-----GGTGATCATTT-AGC--A----A-A-A--ATTTAACA-A-TTAAGCAACCCAGAG-GGAGCGAC
gi|59427 : TAATAGT--G-----AGTGTTCATTT-AGT--T----C-A-A--ATTAAACA-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59428 : TAATAGT--A-----AGGGTTCATTT-TGT--A----A-A-A--AAATAACA-A-TTTAGAAACCCAAAG-GGAGCGAC
gi|59429 : TAA-AGT--T-----AGTGTTCATTA-AGT--A----A-A-A--AATTAACA-A-TTAAGAAACCCAAAG-AGAGCGAC
gi|59430 : TAATAGT--T-----ATTGTTCATTT-AGT--A----A-A-C--ATTTAACA-A-TTAAGAAACCCAAAG-GGA
gi|59431 : TGATAGT--T-----TGTGTTCATTT-ACT--A----A-A-T--ACTTAACA-A-TTAAGAAACCCAAAG-GGAGCAAC
gi|59432 : TAATAGT--T-----AGAGTTCATTA-AGT--A----ATA-A--AAATAATA-A-TTAAGAAACCCAAAG-GTAACGAC
gi|59433 : TAGTAGT--T-----AGTGTTCATT--AGT--A----C-A-A--AATTAACA-A-TTGAGAAACCCAAAG-GGAG
gi|59434 : TAATAGT--T-----AGTGTTCATTA-AGT--A----A-A-A--GTTGAATG-A-TTAAGAAACGCAAAG-GCAGCGAC
gi|59435 : TAATAGT--A-----AGTATCGATTT-TGT--A----A-AGA--AAATAACA-A-TTAAGAAACCCAAAG-GGAGCGA
gi|59436 : TAACTGT--A-----AGTGTTCATTA-AGT--A----A-A-A--ATA-AATA-AATTAAGAAACCCAAAG-GGAGCGA
gi|59437 : TAATAGT--A-----AGTGTTCATTA-AGT--A----A-A-T--ATGTATCA-A-TTAAGAAACCCAAAG-GG
gi|59438 : TAATAGT--A-----AGTGTTTATTA-AGT--A----A-A-A--ATTCAACA-A-TTAAGAAACAAAAAG-TGAGCAAC
gi|59439 : TAATAGT--TCATAAAGTGCTCAGTA-AGT--A----A-A-C--ATTTAACA-A-TTAAGAAACCCAAAG-GGAACTAC
gi|59440 : TAATTGT--A-----AGTATTCATTA-AGT--A----A-A-A--AATTAACA-A-TTAAGTAACCCAGAG-GAAGCGAC
gi|59441 : TAATAGT--T-----A-TATTCATTA-AGT--G----A-A-A--A---AACA-AATTAAGAAACCCCAAG-GGAGCGAC
gi|59442 : TAATACT--T-----AGTGGCCAATA-AGT--T----A-A-A--AAGTAACA-A-TTAAGAAACCCAAAG-GGAGC
gi|59443 : TAATAGT--A-----AATGTTTATTA-AGT--A----A-A-T--ATTTAACA-A-TTAAGAAACTCAAAT-TGAGCAA
gi|59444 : TAATAGC--T-----AGTGTTCATTA-ACA--A----A-A-A--AA--AATAGA-TTAATAAACCCAAAG-GAAGCGA
gi|59445 : TAATAGT--A-----AGTGTTCATTA-AGT--A----A-A-A--AATTAGCA-A-TTAAGAAACACAAAA-
gi|59446 : AACAGT--A-----AGTTTTCATTA-AGT--A----A-A-A--AAATAACA-A-TTAAGAAACTGAAAG-GGAGCGA
gi|59447 : ATAGT--T-----GGTGTTCATTT-TATCTA----A-A-A--ATTTAAAA-A-TTAAGAAACCTAAAG-GGAGCGAC
gi|59448 : TAGT--T-----AGTGT-CATTTTAGT--ACTGAA-A-A--ATATAACA-C-TTAAGAAACCCAAAACGGAGCGAC
gi|59449 : TAGTGAT-----AGTGTTTATTA-TGC--A----A-A-ATAAAATAGCA-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59450 : TAGT--T-----AGTGTTCATTT-AGT--A----A-A-G--AATTGATA-G-TTAAGAAACCC--AG-GGA
gi|59451 : AGT--T-----AGTGTTCATTA-AAT--A----A-A-A--AAATAACA-A-TTAAGAAATCCAAAG-TGAGCGAC
gi|59452 : AGT--A-----AGTGTTCATTA-AGT--A----A-A-A--ATTTAACA-A-TTAAATAACCCAAAG-GGAGCGAC
gi|59453 : AGT--T-----AGGGTTCATTA-AGT--A----A-A-A--ATTTAACA-G-TTAAGAAACCC
gi|59454 : AGT--T-----AGTTTCCATTA-AGT--T----A-A-A--ATATAACA-A-TTAAGAAACCC
gi|59455 : T--T-----AGTGTTCATTA-AGT--A----A-A-T--ATTTAACA-A-TTAAGAAACCCAAAG-AGAGCAAC
gi|59456 : --T-----AGCGTTCATTT-AGT--A----A-A-A--ATTTAACA-A-TTAAGAAACGCAAAG-GCAGC
gi|59457 : -----AGTGTTCACTA-AGT--A----A-A-A--ATGTTACC-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59458 : -----AGTGTTCATTA-AGT--A----A-A-A--ATTAAACA-A-TTAAAAAATCCAAAG-GGAACG
Alignments
lowQualScore : 11 22222 3333 111 1 1 11 555 1 1 1 1
lowQualScore : .. ..... .... ... . . .. ... . . . .
lowQualScore : 44 55555 1111 888 0 0 44 111 0 0 0 1
consensus : TAATAGT--T-----AGTGTTCATT--A-AGTA---A-A-A--ANT-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
Reference ( family-543 ) : TAATAGT--T-----AGTGTTCATT--A-AGTA---A-A-A--ANT-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59419 : TAATAGT--T-----AGTGTTCATT--T-AGTA---A-A-A--AAA-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59420 : TAATAGT--T-----AGTGTTCATT--T-AGTA---A-A-A--AAT--AAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59421 : TAATAGC--T-----AGTGTTCATT--T-AGTA---A-A-A--ATT-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59422 : TAATAGT--T-----AATGTTCATT--T-AGTA---A-A-A--ATT-TAAC-A-A-TTAAGAACCCAAAAG-GGAGCGAC
gi|59423 : TAATAGT--T-----AGAGTTCATT--T-AGTA---A-A-A--AAA-TAAC-A-A-TTAAGAAACACAAAG-GGAGCGA
gi|59424 : TAAAAGT--T-----AGTGTTCATT--T-AGTA---A-A-A--AAA-TAAC-C-A-TTAAAAACCCCAAAG-GGAGCGAC
gi|59425 : TAGTAGT--T-----AGTGTTCATT--A-AGTA---A-A-A--ATT-TAAC-A-A-TTAAGAAACACAAAG-TGAGCGAC
gi|59426 : TAATAGT--T-----GGTGATCATT--T-AGCA---A-A-A--ATT-TAAC-A-A-TTAAGCAACCCAGAG-GGAGCGAC
gi|59427 : TAATAGT--G-----AGTGTTCATT--T-AGTT---C-A-A--ATT-AAAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59428 : TAATAGT--A-----AGGGTTCATT--T-TGTA---A-A-A--AAA-TAAC-A-A-TTTAGAAACCCAAAG-GGAGCGAC
gi|59429 : TAA-AGT--T-----AGTGTTCATT--A-AGTA---A-A-A--AAT-TAAC-A-A-TTAAGAAACCCAAAG-AGAGCGAC
gi|59430 : TAATAGT--T-----ATTGTTCATT--T-AGTA---A-A-C--ATT-TAAC-A-A-TTAAGAAACCCAAAG-GGA
gi|59431 : TGATAGT--T-----TGTGTTCATT--T-ACTA---A-A-T--ACT-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCAAC
gi|59432 : TAATAGT--T-----AGAGTTCATT--A-AGTA---ATA-A--AAA-TAAT-A-A-TTAAGAAACCCAAAG-GTAACGAC
gi|59433 : TAGTAGT--T-----AGTGTTCATT--A--GTA---C-A-A--AAT-TAAC-A-A-TTGAGAAACCCAAAG-GGAG
gi|59434 : TAATAGT--T-----AGTGTTCATT--A-AGTA---A-A-A--GTT-GAAT-G-A-TTAAGAAACGCAAAG-GCAGCGAC
gi|59435 : TAATAGT--A-----AGTATCGATT--T-TGTA---A-AGA--AAA-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCGA
gi|59436 : TAACTGT--A-----AGTGTTCATT--A-AGTA---A-A-A--A-T-AAATAA-A-TTAAGAAACCCAAAG-GGAGCGA
gi|59437 : TAATAGT--A-----AGTGTTCATT--A-AGTA---A-A-T--ATG-TATC-A-A-TTAAGAAACCCAAAG-GG
gi|59438 : TAATAGT--A-----AGTGTTTATT--A-AGTA---A-A-A--ATT-CAAC-A-A-TTAAGAAACAAAAAG-TGAGCAAC
gi|59439 : TAATAGT--TCATAAAGTGCTCAGT--A-AGTA---A-A-C--ATT-TAAC-A-A-TTAAGAAACCCAAAG-GGAACTAC
gi|59440 : TAATTGT--A-----AGTATTCATT--A-AGTA---A-A-A--AAT-TAAC-A-A-TTAAGTAACCCAGAG-GAAGCGAC
gi|59441 : TAATAGT--T-----A-TATTCATT--A-AGTG---A-A-A--A----AAC-A-AATTAAGAAACCCCAAG-GGAGCGAC
gi|59442 : TAATACT--T-----AGTGGCCAAT--A-AGTT---A-A-A--AAG-TAAC-A-A-TTAAGAAACCCAAAG-GGAGC
gi|59443 : TAATAGT--A-----AATGTTTATT--A-AGTA---A-A-T--ATT-TAAC-A-A-TTAAGAAACTCAAAT-TGAGCAA
gi|59444 : TAATAGC--T-----AGTGTTCATT--A-ACAA---A-A-A--AA---AAT-AGA-TTAATAAACCCAAAG-GAAGCGA
gi|59445 : TAATAGT--A-----AGTGTTCATT--A-AGTA---A-A-A--AAT-TAGC-A-A-TTAAGAAACACAAAA-
gi|59446 : AACAGT--A-----AGTTTTCATT--A-AGTA---A-A-A--AAA-TAAC-A-A-TTAAGAAACTGAAAG-GGAGCGA
gi|59447 : ATAGT--T-----GGTGTTCATTTTA-TCTA---A-A-A--ATT-TAAA-A-A-TTAAGAAACCTAAAG-GGAGCGAC
gi|59448 : TAGT--T-----AGTGT-CATT--TTAGTACTGA-A-A--AATATAAC-A-C-TTAAGAAACCCAAAACGGAGCGAC
gi|59449 : TAGTGAT-----AGTGTTTATT--A-TGCA---A-A-ATAAAA-TAGC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59450 : TAGT--T-----AGTGTTCATT--T-AGTA---A-A-G--AAT-TGAT-A-G-TTAAGAAACCC--AG-GGA
gi|59451 : AGT--T-----AGTGTTCATT--A-AATA---A-A-A--AAA-TAAC-A-A-TTAAGAAATCCAAAG-TGAGCGAC
gi|59452 : AGT--A-----AGTGTTCATT--A-AGTA---A-A-A--ATT-TAAC-A-A-TTAAATAACCCAAAG-GGAGCGAC
gi|59453 : AGT--T-----AGGGTTCATT--A-AGTA---A-A-A--ATT-TAAC-A-G-TTAAGAAACCC
gi|59454 : AGT--T-----AGTTTCCATT--A-AGTT---A-A-A--ATA-TAAC-A-A-TTAAGAAACCC
gi|59455 : T--T-----AGTGTTCATT--A-AGTA---A-A-T--ATT-TAAC-A-A-TTAAGAAACCCAAAG-AGAGCAAC
gi|59456 : --T-----AGCGTTCATT--T-AGTA---A-A-A--ATT-TAAC-A-A-TTAAGAAACGCAAAG-GCAGC
gi|59457 : -----AGTGTTCACT--A-AGTA---A-A-A--ATG-TTAC-C-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59458 : -----AGTGTTCATT--A-AGTA---A-A-A--ATT-AAAC-A-A-TTAAAAAATCCAAAG-GGAACG
Alignments
lowQualScore : 11 22222 3333 111 1 1 11 555 1 1 1 1
lowQualScore : .. ..... .... ... . . .. ... . . . .
lowQualScore : 44 55555 1111 888 0 0 44 111 0 0 0 1
consensus : TAATAGT--T-----AGTGTTCATT--A-AGTA---A-A-A--ANT-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
Reference ( family-543 ) : TAATAGT--T-----AGTGTTCATT--A-AGTA---A-A-A--ANT-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59419 : TAATAGT--T-----AGTGTTCATT--T-AGTA---A-A-A--AAA-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59420 : TAATAGT--T-----AGTGTTCATT--T-AGTA---A-A-A--AAT--AAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59421 : TAATAGC--T-----AGTGTTCATT--T-AGTA---A-A-A--ATT-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59422 : TAATAGT--T-----AATGTTCATT--T-AGTA---A-A-A--ATT-TAAC-A-A-TTAAGAACCCAAAAG-GGAGCGAC
gi|59423 : TAATAGT--T-----AGAGTTCATT--T-AGTA---A-A-A--AAA-TAAC-A-A-TTAAGAAACACAAAG-GGAGCGA
gi|59424 : TAAAAGT--T-----AGTGTTCATT--T-AGTA---A-A-A--AAA-TAAC-C-A-TTAAAAACCCCAAAG-GGAGCGAC
gi|59425 : TAGTAGT--T-----AGTGTTCATT--A-AGTA---A-A-A--ATT-TAAC-A-A-TTAAGAAACACAAAG-TGAGCGAC
gi|59426 : TAATAGT--T-----GGTGATCATT--T-AGCA---A-A-A--ATT-TAAC-A-A-TTAAGCAACCCAGAG-GGAGCGAC
gi|59427 : TAATAGT--G-----AGTGTTCATT--T-AGTT---C-A-A--ATT-AAAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59428 : TAATAGT--A-----AGGGTTCATT--T-TGTA---A-A-A--AAA-TAAC-A-A-TTTAGAAACCCAAAG-GGAGCGAC
gi|59429 : TAA-AGT--T-----AGTGTTCATT--A-AGTA---A-A-A--AAT-TAAC-A-A-TTAAGAAACCCAAAG-AGAGCGAC
gi|59430 : TAATAGT--T-----ATTGTTCATT--T-AGTA---A-A-C--ATT-TAAC-A-A-TTAAGAAACCCAAAG-GGA
gi|59431 : TGATAGT--T-----TGTGTTCATT--T-ACTA---A-A-T--ACT-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCAAC
gi|59432 : TAATAGT--T-----AGAGTTCATT--A-AGTA---ATA-A--AAA-TAAT-A-A-TTAAGAAACCCAAAG-GTAACGAC
gi|59433 : TAGTAGT--T-----AGTGTTCATT--A--GTA---C-A-A--AAT-TAAC-A-A-TTGAGAAACCCAAAG-GGAG
gi|59434 : TAATAGT--T-----AGTGTTCATT--A-AGTA---A-A-A--GTT-GAAT-G-A-TTAAGAAACGCAAAG-GCAGCGAC
gi|59435 : TAATAGT--A-----AGTATCGATT--T-TGTA---A-AGA--AAA-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCGA
gi|59436 : TAACTGT--A-----AGTGTTCATT--A-AGTA---A-A-A--A-T-AAATAA-A-TTAAGAAACCCAAAG-GGAGCGA
gi|59437 : TAATAGT--A-----AGTGTTCATT--A-AGTA---A-A-T--ATG-TATC-A-A-TTAAGAAACCCAAAG-GG
gi|59438 : TAATAGT--A-----AGTGTTTATT--A-AGTA---A-A-A--ATT-CAAC-A-A-TTAAGAAACAAAAAG-TGAGCAAC
gi|59439 : TAATAGT--TCATAAAGTGCTCAGT--A-AGTA---A-A-C--ATT-TAAC-A-A-TTAAGAAACCCAAAG-GGAACTAC
gi|59440 : TAATTGT--A-----AGTATTCATT--A-AGTA---A-A-A--AAT-TAAC-A-A-TTAAGTAACCCAGAG-GAAGCGAC
gi|59441 : TAATAGT--T-----A-TATTCATT--A-AGTG---A-A-A--A----AAC-A-AATTAAGAAACCCCAAG-GGAGCGAC
gi|59442 : TAATACT--T-----AGTGGCCAAT--A-AGTT---A-A-A--AAG-TAAC-A-A-TTAAGAAACCCAAAG-GGAGC
gi|59443 : TAATAGT--A-----AATGTTTATT--A-AGTA---A-A-T--ATT-TAAC-A-A-TTAAGAAACTCAAAT-TGAGCAA
gi|59444 : TAATAGC--T-----AGTGTTCATT--A-ACAA---A-A-A--AA---AAT-AGA-TTAATAAACCCAAAG-GAAGCGA
gi|59445 : TAATAGT--A-----AGTGTTCATT--A-AGTA---A-A-A--AAT-TAGC-A-A-TTAAGAAACACAAAA-
gi|59446 : AACAGT--A-----AGTTTTCATT--A-AGTA---A-A-A--AAA-TAAC-A-A-TTAAGAAACTGAAAG-GGAGCGA
gi|59447 : ATAGT--T-----GGTGTTCATTTTA-TCTA---A-A-A--ATT-TAAA-A-A-TTAAGAAACCTAAAG-GGAGCGAC
gi|59448 : TAGT--T-----AGTGT-CATT--TTAGTACTGA-A-A--AATATAAC-A-C-TTAAGAAACCCAAAACGGAGCGAC
gi|59449 : TAGTGAT-----AGTGTTTATT--A-TGCA---A-A-ATAAAA-TAGC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59450 : TAGT--T-----AGTGTTCATT--T-AGTA---A-A-G--AAT-TGAT-A-G-TTAAGAAACCC--AG-GGA
gi|59451 : AGT--T-----AGTGTTCATT--A-AATA---A-A-A--AAA-TAAC-A-A-TTAAGAAATCCAAAG-TGAGCGAC
gi|59452 : AGT--A-----AGTGTTCATT--A-AGTA---A-A-A--ATT-TAAC-A-A-TTAAATAACCCAAAG-GGAGCGAC
gi|59453 : AGT--T-----AGGGTTCATT--A-AGTA---A-A-A--ATT-TAAC-A-G-TTAAGAAACCC
gi|59454 : AGT--T-----AGTTTCCATT--A-AGTT---A-A-A--ATA-TAAC-A-A-TTAAGAAACCC
gi|59455 : T--T-----AGTGTTCATT--A-AGTA---A-A-T--ATT-TAAC-A-A-TTAAGAAACCCAAAG-AGAGCAAC
gi|59456 : --T-----AGCGTTCATT--T-AGTA---A-A-A--ATT-TAAC-A-A-TTAAGAAACGCAAAG-GCAGC
gi|59457 : -----AGTGTTCACT--A-AGTA---A-A-A--ATG-TTAC-C-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59458 : -----AGTGTTCATT--A-AGTA---A-A-A--ATT-AAAC-A-A-TTAAAAAATCCAAAG-GGAACG
blockSeqs : GA CATAA TTA CTG T G TA ATA A G A C
blockSeqs : . . TT . . . . AT . . . .
blockSeqs : . . T . . . . TT . . . .
blockSeqs : . . T . . . . TT . . . .
blockSeqs : . . T . . . . AA . . . .
blockSeqs : . . T . . . . AA . . . .
blockSeqs : . . T . . . . TT . . . .
blockSeqs : . . A . . . . TT . . . .
blockSeqs : . . T . . . . TT . . . .
blockSeqs : . . T . . . . AA . . . .
blockSeqs : . . T . . . . AT . . . .
blockSeqs : . . A . . . . TT . . . .
blockSeqs : . . T . . . . CT . . . .
blockSeqs : . . T . . . . AA . . . .
blockSeqs : . . A . . . . AT . . . .
blockSeqs : . . A . . . . TT . . . .
blockSeqs : . . A . . . . AA . . . .
blockSeqs : . . T . . . . TG . . . .
blockSeqs : . . A . . . . TT . . . .
blockSeqs : . . A . . . . TT . . . .
blockSeqs : . . A . . . . AT . . . .
blockSeqs : . . A . . . . AG . . . .
blockSeqs : . . A . . . . TT . . . .
blockSeqs : . . A . . . . AT . . . .
blockSeqs : . . A . . . . AA . . . .
blockSeqs : . . A . . . . TT . . . .
blockSeqs : . . A . . . . AA . . . .
blockSeqs : . . A . . . . AT . . . .
blockSeqs : . . A . . . . AA . . . .
blockSeqs : . . A . . . . TT . . . .
blockSeqs : . . T . . . . TT . . . .
blockSeqs : . . A . . . . TA . . . .
blockSeqs : . . A . . . . TT . . . .
blockSeqs : . . A . . . . TT . . . .
blockSeqs : . . A . . . . TG . . . .
blockSeqs : . . A . . . . TT . . . .
blockSeqs : . . T . . . . T . . . .
blockSeqs : . A . . . . A . . .
blockSeqs : . A . . . . . . . .
blockSeqCons :
originalCons : TAATAGT--T-----AGTGTTCATT--A-AGTA---A-A-A--ANT-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
finalCons : TAATAGT--T-----AGTGTTCATT--A-AGTA---A-A-A--ANT-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
Alignments
lowQualScore : 11 22222 3333 111 1 1 11 555 1 1 1 1
lowQualScore : .. ..... .... ... . . .. ... . . . .
lowQualScore : 44 55555 1111 888 0 0 44 111 0 0 0 1
consensus : TAATAGT--T-----AGTGTTCATT--A-AGTA---A-A-A--ANT-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
Reference ( family-543 ) : TAATAGT--T-----AGTGTTCATT--A-AGTA---A-A-A--ANT-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59419 : TAATAGT--T-----AGTGTTCATT--T-AGTA---A-A-A--AAA-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59420 : TAATAGT--T-----AGTGTTCATT--T-AGTA---A-A-A--AAT--AAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59421 : TAATAGC--T-----AGTGTTCATT--T-AGTA---A-A-A--ATT-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59422 : TAATAGT--T-----AATGTTCATT--T-AGTA---A-A-A--ATT-TAAC-A-A-TTAAGAACCCAAAAG-GGAGCGAC
gi|59423 : TAATAGT--T-----AGAGTTCATT--T-AGTA---A-A-A--AAA-TAAC-A-A-TTAAGAAACACAAAG-GGAGCGA
gi|59424 : TAAAAGT--T-----AGTGTTCATT--T-AGTA---A-A-A--AAA-TAAC-C-A-TTAAAAACCCCAAAG-GGAGCGAC
gi|59425 : TAGTAGT--T-----AGTGTTCATT--A-AGTA---A-A-A--ATT-TAAC-A-A-TTAAGAAACACAAAG-TGAGCGAC
gi|59426 : TAATAGT--T-----GGTGATCATT--T-AGCA---A-A-A--ATT-TAAC-A-A-TTAAGCAACCCAGAG-GGAGCGAC
gi|59427 : TAATAGT--G-----AGTGTTCATT--T-AGTT---C-A-A--ATT-AAAC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59428 : TAATAGT--A-----AGGGTTCATT--T-TGTA---A-A-A--AAA-TAAC-A-A-TTTAGAAACCCAAAG-GGAGCGAC
gi|59429 : TAA-AGT--T-----AGTGTTCATT--A-AGTA---A-A-A--AAT-TAAC-A-A-TTAAGAAACCCAAAG-AGAGCGAC
gi|59430 : TAATAGT--T-----ATTGTTCATT--T-AGTA---A-A-C--ATT-TAAC-A-A-TTAAGAAACCCAAAG-GGA
gi|59431 : TGATAGT--T-----TGTGTTCATT--T-ACTA---A-A-T--ACT-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCAAC
gi|59432 : TAATAGT--T-----AGAGTTCATT--A-AGTA---ATA-A--AAA-TAAT-A-A-TTAAGAAACCCAAAG-GTAACGAC
gi|59433 : TAGTAGT--T-----AGTGTTCATT--A--GTA---C-A-A--AAT-TAAC-A-A-TTGAGAAACCCAAAG-GGAG
gi|59434 : TAATAGT--T-----AGTGTTCATT--A-AGTA---A-A-A--GTT-GAAT-G-A-TTAAGAAACGCAAAG-GCAGCGAC
gi|59435 : TAATAGT--A-----AGTATCGATT--T-TGTA---A-AGA--AAA-TAAC-A-A-TTAAGAAACCCAAAG-GGAGCGA
gi|59436 : TAACTGT--A-----AGTGTTCATT--A-AGTA---A-A-A--A-T-AAATAA-A-TTAAGAAACCCAAAG-GGAGCGA
gi|59437 : TAATAGT--A-----AGTGTTCATT--A-AGTA---A-A-T--ATG-TATC-A-A-TTAAGAAACCCAAAG-GG
gi|59438 : TAATAGT--A-----AGTGTTTATT--A-AGTA---A-A-A--ATT-CAAC-A-A-TTAAGAAACAAAAAG-TGAGCAAC
gi|59439 : TAATAGT--TCATAAAGTGCTCAGT--A-AGTA---A-A-C--ATT-TAAC-A-A-TTAAGAAACCCAAAG-GGAACTAC
gi|59440 : TAATTGT--A-----AGTATTCATT--A-AGTA---A-A-A--AAT-TAAC-A-A-TTAAGTAACCCAGAG-GAAGCGAC
gi|59441 : TAATAGT--T-----A-TATTCATT--A-AGTG---A-A-A--A----AAC-A-AATTAAGAAACCCCAAG-GGAGCGAC
gi|59442 : TAATACT--T-----AGTGGCCAAT--A-AGTT---A-A-A--AAG-TAAC-A-A-TTAAGAAACCCAAAG-GGAGC
gi|59443 : TAATAGT--A-----AATGTTTATT--A-AGTA---A-A-T--ATT-TAAC-A-A-TTAAGAAACTCAAAT-TGAGCAA
gi|59444 : TAATAGC--T-----AGTGTTCATT--A-ACAA---A-A-A--AA---AAT-AGA-TTAATAAACCCAAAG-GAAGCGA
gi|59445 : TAATAGT--A-----AGTGTTCATT--A-AGTA---A-A-A--AAT-TAGC-A-A-TTAAGAAACACAAAA-
gi|59446 : AACAGT--A-----AGTTTTCATT--A-AGTA---A-A-A--AAA-TAAC-A-A-TTAAGAAACTGAAAG-GGAGCGA
gi|59447 : ATAGT--T-----GGTGTTCATTTTA-TCTA---A-A-A--ATT-TAAA-A-A-TTAAGAAACCTAAAG-GGAGCGAC
gi|59448 : TAGT--T-----AGTGT-CATT--TTAGTACTGA-A-A--AATATAAC-A-C-TTAAGAAACCCAAAACGGAGCGAC
gi|59449 : TAGTGAT-----AGTGTTTATT--A-TGCA---A-A-ATAAAA-TAGC-A-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59450 : TAGT--T-----AGTGTTCATT--T-AGTA---A-A-G--AAT-TGAT-A-G-TTAAGAAACCC--AG-GGA
gi|59451 : AGT--T-----AGTGTTCATT--A-AATA---A-A-A--AAA-TAAC-A-A-TTAAGAAATCCAAAG-TGAGCGAC
gi|59452 : AGT--A-----AGTGTTCATT--A-AGTA---A-A-A--ATT-TAAC-A-A-TTAAATAACCCAAAG-GGAGCGAC
gi|59453 : AGT--T-----AGGGTTCATT--A-AGTA---A-A-A--ATT-TAAC-A-G-TTAAGAAACCC
gi|59454 : AGT--T-----AGTTTCCATT--A-AGTT---A-A-A--ATA-TAAC-A-A-TTAAGAAACCC
gi|59455 : T--T-----AGTGTTCATT--A-AGTA---A-A-T--ATT-TAAC-A-A-TTAAGAAACCCAAAG-AGAGCAAC
gi|59456 : --T-----AGCGTTCATT--T-AGTA---A-A-A--ATT-TAAC-A-A-TTAAGAAACGCAAAG-GCAGC
gi|59457 : -----AGTGTTCACT--A-AGTA---A-A-A--ATG-TTAC-C-A-TTAAGAAACCCAAAG-GGAGCGAC
gi|59458 : -----AGTGTTCATT--A-AGTA---A-A-A--ATT-AAAC-A-A-TTAAAAAATCCAAAG-GGAACG