lowQualScore : 55555555555 111111111111111 111 222222222222222222 22
lowQualScore : 2 9 88888888888 5 1 88 1 4 33 88888 2 1 222 8888 3333 1 11 666666666666666 1 99999 1 3333333 1 999 1 1 1 5 1 0 55555 2 111 000000000000000000 22222 6666666666 444 33 22
lowQualScore : . . ........... . . .. . . .. ..... . . ... .... .... . .. ............... . ..... . ....... . ... . . . . . . ..... . ... .................. ..... .......... ... .. ..
lowQualScore : 7 5 00000000000 4 6 33 3 0 00 55555 5 2 000 9999 8888 1 55 888888888888888 1 55555 1 5555555 1 999 1 1 1 3 1 3 88888 5 888 111111111111111111 99999 0000000000 777 99 00
consensus : TATNTAATAACTNTTCAGTAT---TTA-TTTTTTCATTAGA-AATACCAAAN-AA-TAA-A--TG----CT-A-TA--ATT----TA---TA-AAA--T-------A-------A-AA----GTGGGGCCGGATTGACCATGCTAAA-T-------GGGGCCGG-ATTN-TC-CA-A-GGA-C-GTTTC---GTCCA---GGGGCCGGATTGGT-------A-GC----GGGGCCGGATT-----TG---C---G--T---GGGGCCGGATTNTCCATAACTCATTATAA
Reference ( gi|18861 ) : TATATAATAACTATTCAGTAT--ATTACTTTTTTAATTAGA-AATACCAAAA-AA-TAA-A--TG----CT-A-TA--ATT----TA---TA-AAA--T-------A-------A-AA----GTGGGGCCGGATTGACCATGCTAAA-T-------GGGGCCGG-ATTA-AC-CA-A-GGA-C-GTTTT---GTCTA---GGGGCCGGATTGGT-------A-GC----GGGGCCGGATT-----TG---C---G--T---GGGGCCGGATTGTCCATAACTCA--ATAA
gi|18863 : TATATAATAACTATTCAGTAT--ATTACTTTTTTAATTAGA-AATACCAAAA-AA-TAA-A--TG----CT-A-TA--ATT----TA---TA-AAA--T-------A-------A-AA----GTGGGGCCGGATTGACCATGCTAAA-T-------GGGGCCGG-ATTA-AC-CA-A-GGA-C-GTTTT---GTCTA---GGGGCCGGATTGTT-------A-GC----GGGGCCGGATT-----TG---C---G--T---GGGGCCGGATTGTCCATAACTCA--
gi|18864 : TATATAATAACTATTCAGTAT--ATTACTTTTTTAATTAGA-AATACCAAAA-AA-TAA-A--TG----CT-A-TA--ATT----TA---TA-AAA--T-------A-------A-AA----GTGGGGCCGGATTGACCATGCTAAA-T-------GGGGCCGG-ATTA-AC-CA-A-GGA-C-GTTTT---GTCTA---GGGGCCGGATTGGT-------A-GC----GGGGCCGGATT-----TG---C---G--T---GGGGCCGGATTGACCATAACTCG--t
gi|18866 : TATATAATAACTATTTAGTAT--ATTACTTTTTTAATTAGA-AATACCAAAA-AA-TAA-A--TG----CT-A-TA--ATT----TA---TA-AAA--T-------A-------A-AA----GTGGGGCCGGATTGAACATGCTAAA-T-------TGGGCCGG-ATTA-AC-CA-A-GGA-C-GTTTT---ATCTA---GGGGCCGGATTGGT-------A-GC----GGGGCCAGATT-----TG---C---G--T---GGGGCTGGATTGTCAATAACTCA--ccttacaagtagacatgtgcttc
gi|18867 : TATATAATAACTATTCAGTAT--ATTACCTTTTTAACTAGA-AATACCAAAA-AA-TAA-A--TG----CT-A-TA--ATT----TA---TA-AA---T-------A-------A-AA----GTGGGGCCGGAGTGACTATGCTCAA-T-------GGGGCCGG-ATTA-AC-CA-A-GGA-C-GTTTT---GTCTA---GGGGCCGGATTGGT-------A-GC----GGGGCCGGATT-----TG---C---G--T---GCGGCCGGATTGTCCATAACTC
gi|18869 : TATATAATAACTTTTCAGTAT--ATTACCCTATTAACTAGA-AATACCAAAA-AAATGA-A--TG----CT-A-TA--ATT----TA---TA-AAA--T-------A-------A-AA----GTGGGGCCGGATTGACCATACTAAA-T-------GGGGCCGG-ATTA-AC-CA-A-GGA-C-ATTTT---GTCTA---GGGGTCGGATTGGT-------A-GC----AGGGCCGGATT-----TG---T---G--T---GAGGCCGTATTGTCCATAACTC
gi|18860 : TATATAATAACTATTCAGTAT--TTTATTTTTT--ATCAGA-AATACCAAAA-AA-TAA-A--TG----AT-A-AA--ATT----TA---AA-AAA--T-------A-------A-AA----GTGGGGTCGGATTTACCATGCTAAA-T-------GGGGCCGG-ATAA-AC-CA-A-GGA-C-GTTTT---ATCCA---GGGGCCGAATTGGT-------A-GT-----GGGCCGGATT-----TA---C---G--T---GGAGCCGGATAGTCCATAACTCA--gt
gi|18857 : TATGTAATAACT-TTCAATAT--TTTA-TTTTTTCATTAGA-AATACCAAAT-AA-TAA-A--TG----AT-A-TA--ATT----TA---TA-AAA--T-------A-------A-AT----GTGGG-TTGGATTTACCATGCTAAA-T-------GGGGTCGG-ATAT-TC-CA-A-GGA-T-GTTTT---ATCCA---AGGGCCGGATAAGT-------A-GC----GGGG-AGAATT-----TG---A---A--T---AGGGCCGGATATTCCATAACTt
gi|18851 : TATCTAATAACTTTCCAATAT-----------TTCATTAGA-AATACCAAAT-AA-TAA----TG----CT-A-TT--ATT----TC---TA-AAA--T-------T-------A-AT----GTGGAGCCGGATTTTCCATGCTAAA-T-------GGGGCCGG-ATAT-TC-CA-A-GAA-C-GTTTC---ATCGA---GGGGCAGGATTAGT-------A-AC----GGGACCGGATT-----TA---C---A--T---GGGGCCGGATATTCCATAACTCATTATAA
gi|18850 : TATCTAATAACTTTTCAATAT-----------TTCATTAGA-AATACCAAAT-AA-TAA-T--TG----AT-A-TG--ATT----TT---TA-AAA--T-------T-------A-AT----TTGGGGCCAAATTTTCCATGCTAAA-T-------GGGGCCGG-ATAT-TC-CA-A-GAA-C-GTTTC---ATCCA---GGGGCCGGATTAAT-------A-AC----GGGGCAGGATT-----TA---C---A--T---AGGGCCGGATATTCCATAACTCATTATAAcacgaggttctta
gi|18849 : TATCTAATAACTTTCCAATAT-----------TTCATTAGA-AATACCAAAT-AA-TAA-T--TG----AT-A-TT--ATT----TT---TA-AAA--T-------T-------A-AT----TTGGGGCCAGATTTTCCATGATAA--T-------GGGGCCGG-ATAT-TC-CA-A-GAA-C-GTTTC---ATCCA---GGGGCCGGATTAAT-------A-AC----GGGGCAGGATT-----TA---C---A--T---GGGGCCGGATATTCCATAACTCATTATAAcacgtggttctta
gi|18852 : TATCTAATAACTTTCCAATAT-----------TTCATTAGA-AATACTAAAT-AA-TAA-A--TG----AT-A-TT--ATT----TT---TA-AAA--T-------A-------A-AT----GTGGGACCGGATTTCCCATGCTAAA-T-------GGGGCCGG-ATAT-TC-CA-A-GAA-C-GTTTC---ATTCA---TGGGCTGGATTAAT-------A-AG----GGGGCAGGATT-----TA---C---A--T---GGTGCCGGCTATTCCATAACTCATTATAAcacgtggttctta
gi|18859 : TATCTAATAACTTTCCAATAT--ATTA---------TTAGA-AATACCAAAT-AA-TAA-A--TG----TT-A-TT--ATT----T----TA-AAA--T--------------------------------------------TAAAGT-------GGGGCCGG-ATTT-TT-CA-A-GGA-C-GTTTC---ATCCA---GGGGCCGGATTATT-------A-AC----GGGGCTGGATT-----TA---C---A--T---GGGGCCGGATATTCCATAACTCcacttggttctta
gi|18870 : TATATAATAATTTTTTGATAT--TTTG-TTTTTTCATTAGA-AATACCAACT-AA-TAA-A--TG----AT-T-TA--ATT----TA---TA-GAA--T-------A-------A-AT----GTGGGACCGGATTTACCATGCTAAA-T--------GGGCCCG-ATTATTC-CA-A-GGA-T-GTTTC---ATCCA---GGGGTCGGAT
gi|18853 : TATCTAATAACTTTCCAATAT-----------TTCATTAGA-AATACCAAAT-AA-TAA-A--TG----AT-A-TC--ATT----TT---TA-AAA--T-------T-------A-AT----GTGGG-CCGGATTTTCCATGCTAAA-T-------GGGGCCTG-ATAT-TC-CA-A-GGA-T-GTTTC---ATCCA---GGGGTCG-----------------------------GATT-----TA---C---A--T---GGGACCGGATATTCCATAACTC
gi|18855 : TATCTAATAACTTTCCAATAT-----------TTCATTAGA-AATACAAAAT-AA-TAA-A--TG----GT-A-TT--ATT----TT---TA-AAA--T-------T-------A-AT----GTGGGGCTGGATTTTCCATGCTAAA-T-------GGGGTCGATATT---C-CA-A-AGA-T-GTTTC---ATCCA---GGGTCCGGGCTAGT-------A-AA----AGGGCCGAATT-----TATGTC---A--T---GGCACCAGAT
gi|18854 : TATCTAATAACT-TTC----T--AATA----TTTCATTAGA-ATTACCAAAT-AA-TAA-A--TG----AT-A-TT--ATT----TT---CA-AAA--T-------T-------G-AT----GTGGGCCCGAATTTTCCATGCTAAA-T-------GGAACCGG-ATAT-TC-CA-A-GGA-C-GTTTC---ATCCA---GGAGCCGGATTTAT-------A--T----GGGGCCGGAT
gi|18856 : TATCTAATAAATTTCCAATAT----------TTTA-TTGGA-AATACCAAAT-AA-TAA-A--TG----AT-A-TT--ATT----TT---TA-AAA--T-------T-------A-A-----------------------TG------T-------GGGGCCGG-ATTT-TC-CA-A-GGA-C-GTTTC---ATCCA---GGGGCCGGATTAAT-------T-AC----AGGGCTGGATT-----TA---C---A--T---GAGGCCGGATATTCCATAACTCattccataactc
gi|18868 : TATATAATAATTGTTATGTAT--GT-------------AAA-AATAT--AAT-AA-TTA-A--CA----CTGA-TA---TTGCTATA---TA-AAA--T-------AGAAATAAA-AA----GTGGG-CCGGATTGACCATGCTAAA-T-------GGGGCCGG-ATTG-TC-CAGA-GGC-C-GGATT---CTCCA---GGGGCCGGATTCTC----------C----ATGGCCGTTTT-----TG---A---G--T---GGGGCCGGATTGTCCA
gi|18858 : TATCTAATAACTTTCCAATAT-----------TTCATTAGA-ATGACCAAAT-GA-TAA-A--TG----AT-A-TT--ATT----TT---CA-AAA--T-------T-------A-AT----GTGGGGCCGGATTTTCCATGTTAAA-TGGATCCAGGGGCCGG-ATAT-TC-CA-A-GGA-C-GTTTC---ATCCA---GGGGACGGATT--T-------ACAT----AGGGCTGGATA-----TG---
gi|18862 : TATATAATAATTGTTATGTAT--GT---------AAT-----AATAT-AATA-AA-TAACAC-TG----AT-A-TT--GCTA---TA---TA-AAA--CAGAAATAA-------A-AA----GTGGGACCGGATTGACCATGCTAAA-T-------GGGGCCGG-A---------------------TT---GTCCA---GGGGCCGGATTCTC----------C----AAGGCCGT-TT-----TGA--A---G--C---GGGGCCGGATTGTCCATacataacgca
gi|18865 : TATATAATAATTGTTATGTAT--GT---------AAT-----AATAT--AAC-AA-TTA-A--CA----CTGA-TA---TTGCTATA---TA-AAA--T-------AGAAATAAA-AA----GTGGGGCCTGATTGACCATGCTAAA-T-------GGGGCCGG-ATTG-TC-CA-G-GGGCC-GGATT---CTCCA----TGGCCGTTTTGG--------A-GT----GGGGCCGGATT-----g
gi|18871 : TATATAATAATTGTTAGGTATGTATTAATATTATAA----ACAATACTAATA----T------TG----CT-A-TATAAAA----TA---TA-AAT--A-------A-------A-AA----GTAGGGACAGATTGACCATGCTAAA-T-------GGGGCCGG-ACT---C---------------------TCCA---GGGGCCGGATT
gi|18873 : ATGTAATAACCATTCAGTAT--TTTA-TTTTTTCATAAGA-AATACCAAAA-AA-AAA-AAATT----AT-A-TA--ACT----GA---TT-AAA--T-------A-------A-AA----GTGGGGC-GGATTAACCATGCTAAA-T-------GGGGCCGG-ATAA-AC-CA-A-GGA-C-GTTTT---ATCCA---GGGACCGGATTGGT-------A-AT----GGTGCCGGATT-----TG---A---G--T---GGGGCCGGATAGTCCGTAGCTCA--
gi|18874 : TAATAACTATTCAGTGT--TTTA-TTTTTTCATTAGA-AATACCAAA-----TAA-A--TG----AT-A-TC--ATT----TA---TA-AAA--T-------A-------A-AA----GTGGGGTCGGATAAGCCATGCTAAA-T-------GGGGCCGG-ATAA-AC-CA-A-GGA-C-GTTTT---ATCCA---AGGGCCGGAT
gi|18876 : TTTAACTAGA-AATACCAAAA-AA-TAA-A--TG----CT-A-TA--ATT----TA---TT-AAA--T-------A-------A-AA----GTGGGGCCGGATTGACCATGCTAAA-T-------GGGGCCGG-ATTA-AC-CA-A-GGA-C-GTTTT---GTCTA---GGAGCCGGATTGGT-------A-GC----GGGGCCGGATT-----TG---C---G--T---GGGGCCGGACTGTCCATAACTCA--
gi|18878 : TATCAATATAA-TAA-A--TAACACTT-A-TA---TTGCTATA---TA-AAA--T-------AGAATTAAA-AA----GTGGGGTCGGATTGACTATGCTAAA-T-------GCGGCCGG-ATTC-TC-CA-GTGGC-C-GGATT---CTCCA----TGGCCGTTTTGG--------A-GT----GGGGCCGGATT-----tt
gi|18879 : A-TAA-A--TAAC--CT-A-TA--TCC----TA---TA-AAAAAT-------A-------ACAAT---GTGGGGCCGGATGGACCATGCTAAA-T-------GGGGCCGG-ATTC-TC-CA-G-GGGCC-GGATA---ATCTT---GGGGCCGGATT
gi|18884 : aatgA-TAA-A--TAACC-CT-AATA--TTC----TA---TA-AAA--G-------A-------A-AAAAACGTGGGTCTGGATGGACCATGCTAAA-T-------GGGGCCGG-ATT--------------C----------TCCA---GGGGCCGGATT--T-------T-CC----ATGGCCG--TT-----TG---G---GATT---GGGGCCAGATTctccatagtcgttttggaatgaaaccggattttccaggtgccattataata
gi|18880 : atg-TAATA--TG----CT-A-TA--A------------A-AAA--T-----------------------GTGGGGCTGGATGGACCATGCTAAA-T-------GGGGCCGG-ATTC-TC-CA-G-GGGCC-GGATA---ATCTT---GGGGCCGGGTTCTC----------C----AAGGGCGTTTT-----GG---A---A--T---GGGGCCGGATTTTCCAttgca
gi|18881 : atgataaataaccc-TAATA--TG----CT-A-TA--A--------------AAA--T-----------------------GTGGGGCTGGACGGACCATGCTAAA-T-------GGGGCCTG-ATTA-TC-CA-G-GGG-CTGGATA---ATCTT---GGGGCCGGGTTCTC-------C-AT----GGG--CGTTTT-----GG---A---A--T---GGGGCCGGATTTTCCAggttccagtataata
gi|18882 : atgataaataaccc--TG----CT-A-TA---------TAAAATAGAAA--T-------A-------A-AAT---GTGGGGCCGGATTGACCATGCCAAA-T-------GGGGCAGG--TTC-TC-CA-T-GGC-G-GTTTTGGAGT------GGGGCCGGATTggttccattataata
gi|18883 : ataatagataacactaatat--TG----CT-A-TA--A------------A-AAA--TTA-----A-------A-AAT---GTGGGACCGGACAGACCATGCTAAA-T-------GGGGCCGG-ATT---C---------------------TTCA---GGGGCCGGATTa
gi|18885 : atgataaataacccttatatTT----TA---CG-AAA--T-------A-------A-AAA---GTGGGGCCGGATTGACCATGCTAAA-T-------GGGGCCGG-ATTC-TC-CA-G-GGGCC-GGATT---GTCCA---GGGACCTGATT--T-------T-CC----ATGGCTGTTTT-----TG---A---G--A---GGGGCCGGATTATCCA
gi|18886 : aaatgttaatcattaatttt---TA-AAA--T-------A-------A-AA----GTGGGGCCGGATTGACCATGTTAAA-T-------GTGGCGGG-ATTA-AA-CA-A-GGA-C-GTTTT---GTCCA---GGGGCCAGATTGGT-------A-GC----GGGGCCGGATT-----TG---C---G--T---GGGGCCGGATTGTCCATAACTC
gi|18887 : A-AAA--G-------A-------A-AA----GTGGGGCCGGATGGACCATGCTAAA-T-------GGGGCCGG-ATT---C---------------------TCCA---GGGGCCGGAT--------------------------AATT-----T-----------T---GGGGCCGGATTCTCCATtta
gi|18877 : -AAA--T-------A-------A-AAA---GTGGGGCCGGATTGACCATGCTAAA-T-------GTGGCCGG-ATTG-TC-CA-G-GGGCC-GGATT---CTCCA----TGGCCGTTTTGG--------A-GT----GGGGCCGGATT-----gg
gi|18879 : ataataaataacactgatattgctatataaaacag-T-------GGGGCCGG-ATGG-AC-CA-------------T---G-CTAAATGGGGCCGGATT-------------CTCCAGGGGCCGGATA-----AT---C---T--T---GGGGCCGGATTCTCCATA
gi|18875 : aatgataaataacctatatcctataaaaaataacaatgGCTGG--TTA-TCACA-A-AGA-T-ATTTC---ATCCA---GGGGCCGGATAAGT-------A-AT----GAGGCCAGATT-----TA---C---A--T---GTGGCTGGATAGTCAATAACTgtcgttttggaatgaaaccggattttccaggtgccattataata
gi|18865 : aacagcttttcaacatttaatatgtccgaaatacccaatataaaaatctttttagaactatgtca---GGGGCCTGATTGACCATGCTAA-AT----GGGGCCGGATT--------------G--TCCAGGGGCCGGATTCTCCAT
gi|18877 : tatataataattgttatgtatgtaataatataacaattaacactgatattgctatataaaatagaaataaaaagt---GGGGCCGGATTGACCATGCTAA-AT----GTGGCCGGATT--------------G--TCCAGGGGCCGGATTCTCCATggccgttttggagtggggccggatt
gi|18877 : ataataaataacactgatattgctatataaaacagaaataaaaagt-------A-GT----GGGGCCGGATTGACCATG---CTAAA--T---GTGGCCGGATTGTCCAggccgttttggagtggggccggatt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18872 ): TGTCGAATAACTCCCAATATTTCATTAGAAATCCCAAATAATAAATGATATTATTTTTAAAATTAA
Unaligned ( gi|18888 ): TTCAGGGGCCGAATCAGTAATGGGCTTGCATTTGACCTGATATTCCATAACTC
Alignments
lowQualScore : 555555555555 1111111111
lowQualScore : 1 2 9 999999999999 1 1 2 555 33333 3 11 1 77777 2 1 333 7777 1 1 2222 11 2222222222 1 88888 3333333 22 1 1 3 888 1 99999 666666 222 44
lowQualScore : . . . ............ . . . ... ..... . .. . ..... . . ... .... . . .... .. .......... . ..... ....... .. . . . ... . ..... ...... ... ..
lowQualScore : 0 5 2 222222222222 5 2 2 666 11111 8 66 2 44444 4 2 777 3333 8 1 2222 44 1111111111 0 99999 5555555 11 1 1 2 777 1 66666 000000 444 55
consensus : TATNTAATAACTNTTCAGTAT-TT-A-T-TTT-TTCATTAGAA-ATACCAA-ATAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA--T--A-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-NTC-CA-AGGA-C---GT-TTC---GTCCAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATNNTCCATAACTCATTATAA
Reference ( family-541 ) : TATNTAATAACTNTTCAGTAT-TT-A-T-TTT-TTCATTAGAA-ATACCAA-ANAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA--T--A-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-NTC-CA-AGGA-C---GT-TTC---GTCCAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATTNTCCATAACTCATTATAA
gi|18849 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGAA-ATACCAA-ATAA---TA-----A-T--T-G----AT-A-TT---ATT----TTTA-A----AA--T--T-------A-AT----TTGGGGCCAGATTTTCCATGATAA-T-------GGGGCCGGATA-TTC-CA-AGAA-C---GT-TTC---ATCCAGGGGCCGGATTAATA-ACGGGGCAGGATTTA---CATGGGGCCGGATATTCCATAACTCATTATAA
gi|18850 : TATCTAATAACTTTTCAATAT-TT-----------CATTAGAA-ATACCAA-ATAA---TA-----A-T--T-G----AT-A-TG---ATT----TTTA-A----AA--T--T-------A-AT----TTGGGGCCAAATTTTCCATGCTAAAT-------GGGGCCGGATA-TTC-CA-AGAA-C---GT-TTC---ATCCAGGGGCCGGATTAATA-ACGGGGCAGGATTTA---CATAGGGCCGGATATTCCATAACTCATTATAAcacgtggttctta
gi|18851 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGAA-ATACCAA-ATAA---TA-----A----T-G----CT-A-TT---ATT----TCTA-A----AA--T--T-------A-AT----GTGGAGCCGGATTTTCCATGCTAAAT-------GGGGCCGGATA-TTC-CA-AGAA-C---GT-TTC---ATCGAGGGGCAGGATTAGTA-ACGGGACCGGATTTA---CATGGGGCCGGATATTCCATAACTCATTATAAcacgtggttctta
gi|18852 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGAA-ATACTAA-ATAA---TA-----A-A--T-G----AT-A-TT---ATT----TTTA-A----AA--T--A-------A-AT----GTGGGACCGGATTTCCCATGCTAAAT-------GGGGCCGGATA-TTC-CA-AGAA-C---GT-TTC---ATTCATGGGCTGGATTAATA-AGGGGGCAGGATTTA---CATGGTGCCGGCTATTCCATAACTCATTATAAcacgaggttctta
gi|18853 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGAA-ATACCAA-ATAA---TA-----A-A--T-G----AT-A-TC---ATT----TTTA-A----AA--T--T-------A-AT----GTGGG-CCGGATTTTCCATGCTAAAT-------GGGGCCTGATA-TTC-CA-AGGA-T---GT-TTC---ATCCA------------------GGGGTCGGATTTA---CATGGGACCGGATATTCCATAACTCcacttggttctta
gi|18854 : TATCTAATAACTTTCTAATAT-TT-----------CATTAGAA-TTACCAA-ATAA---TA-----A-A--T-G----AT-A-TT---ATT----TTCA-A----AA--T--T-------G-AT----GTGGGCCCGAATTTTCCATGCTAAAT-------GGAACCGGATA-TTC-CA-AGGA-C---GT-TTC---ATCCAGGAGCCGGATTTATA---------------------TGGGGCCGGATATTCCATAACTC
gi|18855 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGAA-ATACAAA-ATAA---TA-----A-A--T-G----GT-A-TT---ATT----TTTA-A----AA--T--T-------A-AT----GTGGGGCTGGATTTTCCATGCTAAAT-------GGGGTC-GATA-TTC-CA-AAGA-T---GT-TTC---ATCCAGGGTCCGGGCTAGTA-AAAGGGCCGAATTTATGTCATGGCACCAGAT
gi|18856 : TATCTAATAAATTTCCAATAT-TT-----------TATTGGAA-ATACCAA-ATAA---TA-----A-A--T-G----AT-A-TT---ATT----TTTA-A----AA--T--T-------A-A-----------------------TG-----T-------GGGGCCGGATT-TTC-CA-AGGA-C---GT-TTC---ATCCAGGGGCCGGATTAATT-ACAGGGCTGGATTTA---CATGAGGCCGGATATTCCATAACTC
gi|18857 : TATGTAATAACT-TTCAATAT-TTTA-T-TTT-TTCATTAGAA-ATACCAA-ATAA---TA-----A-A--T-G----AT-A-TA---ATT----TATA-A----AA--T--A-------A-AT----GT-GGGTTGGATTTACCATGCTAAAT-------GGGGTCGGATA-TTC-CA-AGGA-T---GT-TTT---ATCCAAGGGCCGGATAAGTA-GCGGGG-AGAATTTG---AATAGGGCCGGATATTCCATAACT
gi|18858 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGAA-TGACCAA-ATGA---TA-----A-A--T-G----AT-A-TT---ATT----TTCA-A----AA--T--T-------A-AT----GTGGGGCCGGATTTTCCATGTTAAATGGATCCAGGGGCCGGATA-TTC-CA-AGGA-C---GT-TTC---ATCCAGGGGACGGATT--TACATAGGGCTGGATATG---
gi|18859 : TATCTAATAACTTTCCAATAT----A-T-T------ATTAGAA-ATACCAA-ATAA---TA-----A-A--T-G----TT-A-TT---ATT----T-TA-A----AA--T--T-------A-AA----GTGGG-------------------------------GCCGGATT-TTT-CA-AGGA-C---GT-TTC---ATCCAGGGGCCGGATTATTA-ACGGGGCTGGATTTA---CATGGGGCCGGATATTCCATAACTCacataacgca
gi|18860 : TATATAATAACTATTCAGTAT-TTTA-T-TTT-TT-ATCAGAA-ATACCAA-AAAA---TA-----A-A--T-G----AT-A-AA---ATT----TAAA-A----AA--T--A-------A-AA----GTGGGGTCGGATTTACCATGCTAAAT-------GGGGCCGGATA-AAC-CA-AGGA-C---GT-TTT---ATCCAGGGGCCGAATTGGTA-GT-GGGCCGGATTTA---CGTGGAGCCGGATAGTCCATAACTCAT
gi|18861 : TATATAATAACTATTCAGTATATT-ACT-TTT-TTAATTAGAA-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA--T--A-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATTGTCCATAACTCA--ATAA
gi|18862 : TATATAATAATTGTTATGTAT-GT-A----------AT---AATATAATAA-ATAA---CACTGATA-T--T-G----CT-A-TA----------TAAA-ACAGAAA--T--A-------A-AAA---GTGGGACCGGATTGACCATGCTAAAT-------GGGGCCGGATT-GTC-CA-GGGG-CCG-GA-TTC----TCCA-AGGCCGTTTTGA-A-GCGGGGCCGGATT
gi|18862 : -AA----GCGGGGCCGGATTGTCCATGgtccatg
gi|18863 : tatataataattgttatgtatgtaataatataataaataacactgatattgctatataaaacagaaataaaaagtgggaccggattgaccatgctaaatggggccggattgtccaggggccggattctccaaggccgttttgTATATAATAACTATTCAGTATATT-ACT-TTT-TTAATTAGAA-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA--T--A-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGGGCCGGATTGTTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATTGTCCATAACTCAT
gi|18864 : TATATAATAACTATTCAGTATATT-ACT-TTT-TTAATTAGAA-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA--T--A-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATTGACCATAACTC
gi|18865 : TATATAATAATTGTTATGTAT-GT-A----------AT----A-ATAT--A-ACAA---TT-----A-A--C-A----CTGA-TA----TTGCTATATA-A----AA--T--AGAAATAAA-AA----GTGGGGCCTGATTGACCATGCTAAAT-------GGGGCCGGATT-GTC-CA-GGGG-CCG-GA-TTC----TCCA-TGGCCGTTTTGG-A-GTGGGGCCGGATTgaccttacaagtagacatgtgcttc
gi|18866 : TATATAATAACTATTTAGTATATT-ACT-TTT-TTAATTAGAA-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA--T--A-------A-AA----GTGGGGCCGGATTGAACATGCTAAAT-------TGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---ATCTAGGGGCCGGATTGGTA-GCGGGGCCAGATTTG---CGTGGGGCTGGATTGTCAATAACTCA
gi|18867 : TATATAATAACTATTCAGTATATT-A-CCTTT-TTAACTAGAA-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----A---T--A-------A-AA----GTGGGGCCGGAGTGACTATGCTCAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGCGGCCGGATTGTCCATAACTC
gi|18868 : TATATAATAATTGTT----AT-GT-A-T-GT--------AAAA-ATAT--A-ATAA---TT-----A-A--C-A----CTGA-TA----TTGCTATATA-A----AA--T--AGAAATAAA-AA----GTGGG-CCGGATTGACCATGCTAAAT-------GGGGCCGGATT-GTC-CAGAGGC-C---GGATTC----TCCAGGGGCCGGATTCTC---CATGGCCGTTTTTG---AGTGGGGCCGGATTGTCCA
gi|18869 : TATATAATAACTTTTCAGTATATT-A-C-CCTATTAACTAGAA-ATACCAA-AAAAA--TG-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA--T--A-------A-AA----GTGGGGCCGGATTGACCATACTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---AT-TTT---GTCTAGGGGTCGGATTGGTA-GCAGGGCCGGATTTG---TGTGAGGCCGTATTGTCCATAACTCGT
gi|18870 : TATATAATAATTTTTTGATAT-TTTG-T-TTT-TTCATTAGAA-ATACCAA-CTAA---TA-----A-A--T-G----AT-T-TA---ATT----TATA-G----AA--T--A-------A-AT----GTGGGACCGGATTTACCATGCTAAAT--------GGGCCCGATTATTC-CA-AGGA-T---GT-TTC---ATCCAGGGGTCGGAT
gi|18871 : TATATAATAATTGTTAGGTAT-GT-A-T-TAA-T--ATTATAA-ACA-----ATAC---TA-----ATA--TTG----CT-A-TATA-AAA----TATA-A----AT--A--A-------A-AA----GTAGGGACAGATTGACCATGCTAAAT-------GGGGCCGGACT-CTC-CA-GGGG-C---
gi|18872 : AATAACTCC-CAATAT-TT-----------CATTAGAA-ATCCCAA-ATAA---TA-----A-A--T-G----AT-A-TT---ATT----TTTA-A----AA--T--T-------A-Acggatt
gi|18873 : tgtcgATGTAATAACCATTCAGTAT-TTTA-T-TTT-TTCATAAGAA-ATACCAA-AAAA---AA-----A-AAAT-T----AT-A-TA---ACT----GATT-A----AA--T--A-------A-AA----GTGGGGC-GGATTAACCATGCTAAAT-------GGGGCCGGATA-AAC-CA-AGGA-C---GT-TTT---ATCCAGGGACCGGATTGGTA-ATGGTGCCGGATTTG---AGTGGGGCCGGATAGTCCGTAGCTCA
gi|18874 : TAATAACTATTCAGTGT-TTTA-T-TTT-TTCATTAGAA-ATACCAA-A------TA-----A-A--T-G----AT-A-TC---ATT----TATA-A----AA--T--A-------A-AA----GTGGGGTCGGATAAGCCATGCTAAAT-------GGGGCCGGATA-AAC-CA-AGGA-C---GT-TTT---ATCCAAGGGCCGGAT
gi|18875 : GCTGG-TT-ATCACA-AAGA-T---AT-TTC---ATCCAGGGGCCGGATAAGTA-ATGAGGCCAGATTTA---CATGTGGCTGGATAGTCAATAACT
gi|18876 : aacagcttttcaacatttaatatgtccgaaatacccaatataaaaatctttttagaactatgtcaT-TTAACTAGAA-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATT-A----AA--T--A-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGAGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGACTGTCCATAACTCATT
gi|18877 : -A----AA--T--A-------A-AAA---GTGGGGCCGGATTGACCATGCTAAAT-------GTGGCCGGATT-GTC-CA-GGGG-CCG-GA-TTC----TCCA-TGGCCGTTTTGG-A-GTGGGGCCGGATT
gi|18878 : ataataaataacactgatattgctatataaaacagTATCAATATAA---TA-----A-A--T-AACACTT-A-TA----TTGCTATATA-A----AA--T--AGAATTAAA-AA----GTGGGGTCGGATTGACTATGCTAAAT-------GCGGCCGGATT-CTC-CA-GTGG-CCG-GA-TTC----TCCA-TGGCCGTTTTGG-A-GTGGGGCCGGATT
gi|18879 : A-ATGA---TA-----A-A--T-AAC--CT-A-TA---TCC----TATA-A----AAAAT--A-------ACAAT---GTGGGGCCGGATGGACCATGCTAAAT-------GGGGCCGGATT-CTC-CA-GGGGCC---GG-ATA---ATCTTGGGGCCGGATTCTC---CATAGTCGTTTTGG---AATGAAACCGGATTTTCCAGGTGCCATTATAA
gi|18880 : AA-ATAACCCTA-----ATA--T-G----CT-A-TA---A---------A-A----AA--T------------------GTGGGGCTGGATGGACCATGCTAAAT-------GGGGCCGGATT-CTC-CA-GGGGCC---GG-ATA---ATCTTGGGGCCGGGTTCTC---CAAGGGCGTTTTGG---AATGGGGCCGGATTTTCCAta
gi|18881 : atgatAA-ATAACCCTA-----ATA--T-G----CT-A-TA---A-----------A----AA--T------------------GTGGGGCTGGACGGACCATGCTAAAT-------GGGGCCTGATT-ATC-CA-GGGG-CT--GG-ATA---ATCTTGGGGCCGGGTTCTCC-ATGGG--CGTTTTGG---AATGGGGCCGGATTTTCCAGGTTCCATTATAAggttccagtataata
gi|18882 : atgat--T-G----CT-A-TATAAA-------ATAGA----AA--T--A-------A-AAT---GTGGGGCCGGATTGACCATGCCAAAT-------GGGGCAGG-TT-CTC-CA-TGGC-G---GT-TTTGGAGT---GGGGCCGGATTta
gi|18883 : ataatagataacactaatat--T-G----CT-A-TA---A---------A-A----AA--TTAA-------A-AAT---GTGGGACCGGACAGACCATGCTAAAT-------GGGGCCGGATT-CTT-CA-GGGG-C---a
gi|18884 : atgataaataacccttatat-ATGA---TA-----A-A--T-AACC-CT-AATA---TTC----TATA-A----AA--G--A-------A-AAAAACGTGGGTCTGGATGGACCATGCTAAAT-------GGGGCCGGATT-CTC-CA-GGGG-CCGGAT-TT-----TCCA-TGGCCGT-TTGGGA-TTGGGGCCAGATTTcggatt
gi|18885 : TT----TACG-A----AA--T--A-------A-AAA---GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-CTC-CA-GGGGCC---GG-ATT---GTCCAGGGACCTGATT--TT-CCATGGCTGTTTTTG---AGAGGGGCCGGATTATCCAtgca
gi|18886 : aaatgttaatcattaattttTA-A----AA--T--A-------A-AA----GTGGGGCCGGATTGACCATGTTAAAT-------GTGGCGGGATT-AAA-CA-AGGA-C---GT-TTT---GTCCAGGGGCCAGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATTGTCCATAACTC-TTA
gi|18887 : A-A----AA--G--A-------A-AA----GTGGGGCCGGATGGACCATGCTAAAT-------GGGGCCGGATT-C-------------------------TCCAGGGGCCGGAT---------------AATTT------TGGGGCCGGATTCTCCAT
gi|18888 : TTCAGGGGCCGAATCAGTA-ATGGG------CTTG---CATTTGACCTGATATTCCATAACTCgg
Alignments
lowQualScore : 555555555555 11111111
lowQualScore : 1 2 9 999999999999 1 1 1 555 55555 3 11 1 99999 2 1 4444 8888 0 1 4444 333 00000000 1 99999 3333333 22 1 1 3 888 1 99999 666666 222 22
lowQualScore : . . . ............ . . . ... ..... . .. . ..... . . .... .... . . .... ... ........ . ..... ....... .. . . . ... . ..... ...... ... ..
lowQualScore : 0 5 2 222222222222 4 4 1 111 77777 4 66 1 88888 3 1 5555 6666 9 1 5555 333 77777777 0 33333 5555555 11 1 1 2 777 1 66666 000000 444 00
consensus : TATNTAATAACTNTTCAGTAT-TT-A-T-TTT-TTCATTAGA-A-ATACCAA-ATAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-NTC-CA-AGGA-C---GT-TTC---GTCCAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATNNTCCATAACTCATTATAA
Reference ( family-541 ) : TATNTAATAACTNTTCAGTAT-TT-A-T-TTT-TTCATTAGA-A-ATACCAA-ATAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-NTC-CA-AGGA-C---GT-TTC---GTCCAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATNNTCCATAACTCATTATAA
gi|18849 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGA-A-ATACCAA-ATAA---TA-----A-T--T-G----AT-A-TT---ATT----TTTA-A----AA---TT-------A-AT----TTGGGGCCAGATTTTCCATGATAA-T-------GGGGCCGGATA-TTC-CA-AGAA-C---GT-TTC---ATCCAGGGGCCGGATTAATA-ACGGGGCAGGATTTA---CATGGGGCCGGATATTCCATAACTCATTATAA
gi|18850 : TATCTAATAACTTTTCAATAT-TT-----------CATTAGA-A-ATACCAA-ATAA---TA-----A-T--T-G----AT-A-TG---ATT----TTTA-A----AA---TT-------A-AT----TTGGGGCCAAATTTTCCATGCTAAAT-------GGGGCCGGATA-TTC-CA-AGAA-C---GT-TTC---ATCCAGGGGCCGGATTAATA-ACGGGGCAGGATTTA---CATAGGGCCGGATATTCCATAACTCATTATAAcacgtggttctta
gi|18851 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGA-A-ATACCAA-ATAA---TA-----A----T-G----CT-A-TT---ATT----TCTA-A----AA---TT-------A-AT----GTGGAGCCGGATTTTCCATGCTAAAT-------GGGGCCGGATA-TTC-CA-AGAA-C---GT-TTC---ATCGAGGGGCAGGATTAGTA-ACGGGACCGGATTTA---CATGGGGCCGGATATTCCATAACTCATTATAAcacgtggttctta
gi|18852 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGA-A-ATACTAA-ATAA---TA-----A-A--T-G----AT-A-TT---ATT----TTTA-A----AA---TA-------A-AT----GTGGGACCGGATTTCCCATGCTAAAT-------GGGGCCGGATA-TTC-CA-AGAA-C---GT-TTC---ATTCATGGGCTGGATTAATA-AGGGGGCAGGATTTA---CATGGTGCCGGCTATTCCATAACTCATTATAAcacgaggttctta
gi|18853 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGA-A-ATACCAA-ATAA---TA-----A-A--T-G----AT-A-TC---ATT----TTTA-A----AA---TT-------A-AT----GTGGG-CCGGATTTTCCATGCTAAAT-------GGGGCCTGATA-TTC-CA-AGGA-T---GT-TTC---ATCCA------------------GGGGTCGGATTTA---CATGGGACCGGATATTCCATAACTCcacttggttctta
gi|18854 : TATCTAATAACTTTCTAATAT-TT-----------CATTAGA-A-TTACCAA-ATAA---TA-----A-A--T-G----AT-A-TT---ATT----TTCA-A----AA---TT-------G-AT----GTGGGCCCGAATTTTCCATGCTAAAT-------GGAACCGGATA-TTC-CA-AGGA-C---GT-TTC---ATCCAGGAGCCGGATTTATA---------------------TGGGGCCGGATATTCCATAACTC
gi|18855 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGA-A-ATACAAA-ATAA---TA-----A-A--T-G----GT-A-TT---ATT----TTTA-A----AA---TT-------A-AT----GTGGGGCTGGATTTTCCATGCTAAAT-------GGGGTC-GATA-TTC-CA-AAGA-T---GT-TTC---ATCCAGGGTCCGGGCTAGTA-AAAGGGCCGAATTTATGTCATGGCACCAGAT
gi|18856 : TATCTAATAAATTTCCAATAT-TT-----------TATTGGA-A-ATACCAA-ATAA---TA-----A-A--T-G----AT-A-TT---ATT----TTTA-A----AA---TT-------A-A-----------------------TG-----T-------GGGGCCGGATT-TTC-CA-AGGA-C---GT-TTC---ATCCAGGGGCCGGATTAATT-ACAGGGCTGGATTTA---CATGAGGCCGGATATTCCATAACTC
gi|18857 : TATGTAATAACT-TTCAATAT-TTTA-T-TTT-TTCATTAGA-A-ATACCAA-ATAA---TA-----A-A--T-G----AT-A-TA---ATT----TATA-A----AA---TA-------A-AT----GT-GGGTTGGATTTACCATGCTAAAT-------GGGGTCGGATA-TTC-CA-AGGA-T---GT-TTT---ATCCAAGGGCCGGATAAGTA-GCGGGG-AGAATTTG---AATAGGGCCGGATATTCCATAACT
gi|18858 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGA-A-TGACCAA-ATGA---TA-----A-A--T-G----AT-A-TT---ATT----TTCA-A----AA---TT-------A-AT----GTGGGGCCGGATTTTCCATGTTAAATGGATCCAGGGGCCGGATA-TTC-CA-AGGA-C---GT-TTC---ATCCAGGGGACGGATT--TACATAGGGCTGGATATG---
gi|18859 : TATCTAATAACTTTCCAATAT----A-T-T------ATTAGA-A-ATACCAA-ATAA---TA-----A-A--T-G----TT-A-TT---ATT----T-TA-A----AA---TT-------A-AA----GTGGG-------------------------------GCCGGATT-TTT-CA-AGGA-C---GT-TTC---ATCCAGGGGCCGGATTATTA-ACGGGGCTGGATTTA---CATGGGGCCGGATATTCCATAACTCacataacgca
gi|18860 : TATATAATAACTATTCAGTAT-TTTA-T-TTT-TT-ATCAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----AT-A-AA---ATT----TAAA-A----AA---TA-------A-AA----GTGGGGTCGGATTTACCATGCTAAAT-------GGGGCCGGATA-AAC-CA-AGGA-C---GT-TTT---ATCCAGGGGCCGAATTGGTA-GT-GGGCCGGATTTA---CGTGGAGCCGGATAGTCCATAACTCAT
gi|18861 : TATATAATAACTATTCAGTATATT-ACT-TTT-TTAATTAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATTGTCCATAACTCA--ATAA
gi|18862 : TATATAATAATTGTTATGTAT-GT-A----------AT---A-ATATAATAA-ATAA---CACTGATA-T--T-G----CT-A-TA----------TAAA-ACAGAAA---TA-------A-AAA---GTGGGACCGGATTGACCATGCTAAAT-------GGGGCCGGATT-GTC-CA-GGGG-CCG-GA-TTC----TCCA-AGGCCGTTTTGA-A-GCGGGGCCGGATT
gi|18862 : -AA----GCGGGGCCGGATTGTCCATGgtccatg
gi|18863 : tatataataattgttatgtatgtaataatataataaataacactgatattgctatataaaacagaaataaaaagtgggaccggattgaccatgctaaatggggccggattgtccaggggccggattctccaaggccgttttgTATATAATAACTATTCAGTATATT-ACT-TTT-TTAATTAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGGGCCGGATTGTTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATTGTCCATAACTCAT
gi|18864 : TATATAATAACTATTCAGTATATT-ACT-TTT-TTAATTAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATTGACCATAACTC
gi|18865 : TATATAATAATTGTTATGTAT-GT-A----------AT-----A-ATAT--A-ACAA---TT-----A-A--C-A----CTGA-TA----TTGCTATATA-A----AA---TAGAAATAAA-AA----GTGGGGCCTGATTGACCATGCTAAAT-------GGGGCCGGATT-GTC-CA-GGGG-CCG-GA-TTC----TCCA-TGGCCGTTTTGG-A-GTGGGGCCGGATTgaccttacaagtagacatgtgcttc
gi|18866 : TATATAATAACTATTTAGTATATT-ACT-TTT-TTAATTAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGAACATGCTAAAT-------TGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---ATCTAGGGGCCGGATTGGTA-GCGGGGCCAGATTTG---CGTGGGGCTGGATTGTCAATAACTCA
gi|18867 : TATATAATAACTATTCAGTATATT-A-CCTTT-TTAACTAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----A----TA-------A-AA----GTGGGGCCGGAGTGACTATGCTCAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGCGGCCGGATTGTCCATAACTC
gi|18868 : TATATAATAATTGTT----AT-GT-A-T-GT--------AAA-A-ATAT--A-ATAA---TT-----A-A--C-A----CTGA-TA----TTGCTATATA-A----AA---TAGAAATAAA-AA----GTGGG-CCGGATTGACCATGCTAAAT-------GGGGCCGGATT-GTC-CAGAGGC-C---GGATTC----TCCAGGGGCCGGATTCTC---CATGGCCGTTTTTG---AGTGGGGCCGGATTGTCCA
gi|18869 : TATATAATAACTTTTCAGTATATT-A-C-CCTATTAACTAGA-A-ATACCAA-AAAAA--TG-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATACTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---AT-TTT---GTCTAGGGGTCGGATTGGTA-GCAGGGCCGGATTTG---TGTGAGGCCGTATTGTCCATAACTCGT
gi|18870 : TATATAATAATTTTTTGATAT-TTTG-T-TTT-TTCATTAGA-A-ATACCAA-CTAA---TA-----A-A--T-G----AT-T-TA---ATT----TATA-G----AA---TA-------A-AT----GTGGGACCGGATTTACCATGCTAAAT--------GGGCCCGATTATTC-CA-AGGA-T---GT-TTC---ATCCAGGGGTCGGAT
gi|18871 : TATATAATAATTGTTAGGTAT-GT-A-T-TAA-T--ATTATA-A-ACA-----ATAC---TA-----ATA--TTG----CT-A-TATA-AAA----TATA-A----AT---AA-------A-AA----GTAGGGACAGATTGACCATGCTAAAT-------GGGGCCGGACT-CTC-CA-GGGG-C---
gi|18872 : AATAACTCC-CAATAT-TT-----------CATTAGA-A-ATCCCAA-ATAA---TA-----A-A--T-G----AT-A-TT---ATT----TTTA-A----AA---TT-------A-Acggatt
gi|18873 : tgtcgATGTAATAACCATTCAGTAT-TTTA-T-TTT-TTCATAAGA-A-ATACCAA-AAAA---AA-----A-AAAT-T----AT-A-TA---ACT----GATT-A----AA---TA-------A-AA----GTGGGGC-GGATTAACCATGCTAAAT-------GGGGCCGGATA-AAC-CA-AGGA-C---GT-TTT---ATCCAGGGACCGGATTGGTA-ATGGTGCCGGATTTG---AGTGGGGCCGGATAGTCCGTAGCTCA
gi|18874 : TAATAACTATTCAGTGT-TTTA-T-TTT-TTCATTAGA-A-ATACCAA-ATAA------------A--T-G----AT-A-TC---ATT----TATA-A----AA---TA-------A-AA----GTGGGGTCGGATAAGCCATGCTAAAT-------GGGGCCGGATA-AAC-CA-AGGA-C---GT-TTT---ATCCAAGGGCCGGAT
gi|18875 : GCTGG-TT-ATCACA-AAGA-T---AT-TTC---ATCCAGGGGCCGGATAAGTA-ATGAGGCCAGATTTA---CATGTGGCTGGATAGTCAATAACT
gi|18876 : aacagcttttcaacatttaatatgtccgaaatacccaatataaaaatctttttagaactatgtcaT-TTAACTAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATT-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGAGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGACTGTCCATAACTCATT
gi|18877 : -ATAATAA-ATAA---CACTGATA-T--T-G----CT-A-TA----------TAAA-ACAGAAA---TA-------A-AAA---GTGGGGCCGGATTGACCATGCTAAAT-------GTGGCCGGATT-GTC-CA-GGGG-CCG-GA-TTC----TCCA-TGGCCGTTTTGG-A-GTGGGGCCGGATT
gi|18878 : TATCAATATAA---TA-----A-A--T-AACACTT-A-TA----TTGCTATATA-A----AA---TAGAATTAAA-AA----GTGGGGTCGGATTGACTATGCTAAAT-------GCGGCCGGATT-CTC-CA-GTGG-CCG-GA-TTC----TCCA-TGGCCGTTTTGG-A-GTGGGGCCGGATT
gi|18879 : A-ATGA---TA-----A-A--T-AAC--CT-A-TA---TCC----TATA-A----AAAA-TA-------ACAAT---GTGGGGCCGGATGGACCATGCTAAAT-------GGGGCCGGATT-CTC-CA-GGGGCC---GG-ATA---ATCTTGGGGCCGGATTCTC---CATAGTCGTTTTGG---AATGAAACCGGATTTTCCAGGTGCCATTATAA
gi|18880 : AA-ATAACCCTA-----ATA--T-G----CT-A-TA---A---------A-A----AA---T----------------GTGGGGCTGGATGGACCATGCTAAAT-------GGGGCCGGATT-CTC-CA-GGGGCC---GG-ATA---ATCTTGGGGCCGGGTTCTC---CAAGGGCGTTTTGG---AATGGGGCCGGATTTTCCAta
gi|18881 : atgatAA-ATAACCCTA-----ATA--T-G----CT-A-TA---A-----------A----AA---T----------------GTGGGGCTGGACGGACCATGCTAAAT-------GGGGCCTGATT-ATC-CA-GGGG-CT--GG-ATA---ATCTTGGGGCCGGGTTCTCC-ATGGG--CGTTTTGG---AATGGGGCCGGATTTTCCAGGTTCCATTATAAggttccagtataata
gi|18882 : atgatTAGATA-ACAC-----TAA---TA-----T----T-G----CT-A-TATAAA-------ATAGA----AA---TA-------A-AAT---GTGGGGCCGGATTGACCATGCCAAAT-------GGGGCAGG-TT-CTC-CA-TGGC-G---GT-TTTGGAGT---GGGGCCGGATTta
gi|18883 : ataa-ATGA---TA-----A-A--T-AACCCTT-A-TA----TTGC--TATA-A----AAAATTA-------A-AAAT--GTGGGACCGGACAGACCATGCTAAAT-------GGGGCCGGATT-CTT-CA-GGGG-C---a
gi|18884 : -ATGA---TA-----A-A--T-AACC-CT-AATA---TTC----TATA-A----AA---GA-------A-AAAAACGTGGGTCTGGATGGACCATGCTAAAT-------GGGGCCGGATT-CTC-CA-GGGG-CCGGAT-TT-----TCCA-TGGCCGT-TTGGGA-TTGGGGCCAGATTTcggatt
gi|18885 : TT----TACG-A----AA---TA-------A-AAA---GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-CTC-CA-GGGGCC---GG-ATT---GTCCAGGGACCTGATT--TT-CCATGGCTGTTTTTG---AGAGGGGCCGGATTATCCAtgca
gi|18886 : aaatgttaatcattaattttTA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGTTAAAT-------GTGGCGGGATT-AAA-CA-AGGA-C---GT-TTT---GTCCAGGGGCCAGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATTGTCCATAACTC-TTA
gi|18887 : A-A----AA---GA-------A-AA----GTGGGGCCGGATGGACCATGCTAAAT-------GGGGCCGGATT-C-------------------------TCCAGGGGCCGGAT---------------AATTT------TGGGGCCGGATTCTCCAT
gi|18888 : TTCAGGGGCCGAATCAGTA-ATGGG------CTTG---CATTTGACCTGATATTCCATAACTCgg
Alignments
lowQualScore : 555555555555 11111111
lowQualScore : 1 2 9 999999999999 1 1 1 555 55555 3 11 1 99999 2 1 4444 8888 0 1 4444 333 00000000 1 99999 3333333 22 1 1 3 888 1 99999 666666 222 22
lowQualScore : . . . ............ . . . ... ..... . .. . ..... . . .... .... . . .... ... ........ . ..... ....... .. . . . ... . ..... ...... ... ..
lowQualScore : 0 5 2 222222222222 4 4 1 111 77777 4 66 1 88888 3 1 5555 6666 9 1 5555 333 77777777 0 33333 5555555 11 1 1 2 777 1 66666 000000 444 00
consensus : TATNTAATAACTNTTCAGTAT-TT-A-T-TTT-TTCATTAGA-A-ATACCAA-ATAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-NTC-CA-AGGA-C---GT-TTC---GTCCAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATNNTCCATAACTCATTATAA
Reference ( family-541 ) : TATNTAATAACTNTTCAGTAT-TT-A-T-TTT-TTCATTAGA-A-ATACCAA-ATAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-NTC-CA-AGGA-C---GT-TTC---GTCCAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATNNTCCATAACTCATTATAA
gi|18849 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGA-A-ATACCAA-ATAA---TA-----A-T--T-G----AT-A-TT---ATT----TTTA-A----AA---TT-------A-AT----TTGGGGCCAGATTTTCCATGATAA-T-------GGGGCCGGATA-TTC-CA-AGAA-C---GT-TTC---ATCCAGGGGCCGGATTAATA-ACGGGGCAGGATTTA---CATGGGGCCGGATATTCCATAACTCATTATAA
gi|18850 : TATCTAATAACTTTTCAATAT-TT-----------CATTAGA-A-ATACCAA-ATAA---TA-----A-T--T-G----AT-A-TG---ATT----TTTA-A----AA---TT-------A-AT----TTGGGGCCAAATTTTCCATGCTAAAT-------GGGGCCGGATA-TTC-CA-AGAA-C---GT-TTC---ATCCAGGGGCCGGATTAATA-ACGGGGCAGGATTTA---CATAGGGCCGGATATTCCATAACTCATTATAAcacgtggttctta
gi|18851 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGA-A-ATACCAA-ATAA---TA-----A----T-G----CT-A-TT---ATT----TCTA-A----AA---TT-------A-AT----GTGGAGCCGGATTTTCCATGCTAAAT-------GGGGCCGGATA-TTC-CA-AGAA-C---GT-TTC---ATCGAGGGGCAGGATTAGTA-ACGGGACCGGATTTA---CATGGGGCCGGATATTCCATAACTCATTATAAcacgtggttctta
gi|18852 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGA-A-ATACTAA-ATAA---TA-----A-A--T-G----AT-A-TT---ATT----TTTA-A----AA---TA-------A-AT----GTGGGACCGGATTTCCCATGCTAAAT-------GGGGCCGGATA-TTC-CA-AGAA-C---GT-TTC---ATTCATGGGCTGGATTAATA-AGGGGGCAGGATTTA---CATGGTGCCGGCTATTCCATAACTCATTATAAcacgaggttctta
gi|18853 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGA-A-ATACCAA-ATAA---TA-----A-A--T-G----AT-A-TC---ATT----TTTA-A----AA---TT-------A-AT----GTGGG-CCGGATTTTCCATGCTAAAT-------GGGGCCTGATA-TTC-CA-AGGA-T---GT-TTC---ATCCA------------------GGGGTCGGATTTA---CATGGGACCGGATATTCCATAACTCcacttggttctta
gi|18854 : TATCTAATAACTTTCTAATAT-TT-----------CATTAGA-A-TTACCAA-ATAA---TA-----A-A--T-G----AT-A-TT---ATT----TTCA-A----AA---TT-------G-AT----GTGGGCCCGAATTTTCCATGCTAAAT-------GGAACCGGATA-TTC-CA-AGGA-C---GT-TTC---ATCCAGGAGCCGGATTTATA---------------------TGGGGCCGGATATTCCATAACTC
gi|18855 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGA-A-ATACAAA-ATAA---TA-----A-A--T-G----GT-A-TT---ATT----TTTA-A----AA---TT-------A-AT----GTGGGGCTGGATTTTCCATGCTAAAT-------GGGGTC-GATA-TTC-CA-AAGA-T---GT-TTC---ATCCAGGGTCCGGGCTAGTA-AAAGGGCCGAATTTATGTCATGGCACCAGAT
gi|18856 : TATCTAATAAATTTCCAATAT-TT-----------TATTGGA-A-ATACCAA-ATAA---TA-----A-A--T-G----AT-A-TT---ATT----TTTA-A----AA---TT-------A-A-----------------------TG-----T-------GGGGCCGGATT-TTC-CA-AGGA-C---GT-TTC---ATCCAGGGGCCGGATTAATT-ACAGGGCTGGATTTA---CATGAGGCCGGATATTCCATAACTC
gi|18857 : TATGTAATAACT-TTCAATAT-TTTA-T-TTT-TTCATTAGA-A-ATACCAA-ATAA---TA-----A-A--T-G----AT-A-TA---ATT----TATA-A----AA---TA-------A-AT----GT-GGGTTGGATTTACCATGCTAAAT-------GGGGTCGGATA-TTC-CA-AGGA-T---GT-TTT---ATCCAAGGGCCGGATAAGTA-GCGGGG-AGAATTTG---AATAGGGCCGGATATTCCATAACT
gi|18858 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGA-A-TGACCAA-ATGA---TA-----A-A--T-G----AT-A-TT---ATT----TTCA-A----AA---TT-------A-AT----GTGGGGCCGGATTTTCCATGTTAAATGGATCCAGGGGCCGGATA-TTC-CA-AGGA-C---GT-TTC---ATCCAGGGGACGGATT--TACATAGGGCTGGATATG---
gi|18859 : TATCTAATAACTTTCCAATAT----A-T-T------ATTAGA-A-ATACCAA-ATAA---TA-----A-A--T-G----TT-A-TT---ATT----T-TA-A----AA---TT-------A-AA----GTGGG-------------------------------GCCGGATT-TTT-CA-AGGA-C---GT-TTC---ATCCAGGGGCCGGATTATTA-ACGGGGCTGGATTTA---CATGGGGCCGGATATTCCATAACTCacataacgca
gi|18860 : TATATAATAACTATTCAGTAT-TTTA-T-TTT-TT-ATCAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----AT-A-AA---ATT----TAAA-A----AA---TA-------A-AA----GTGGGGTCGGATTTACCATGCTAAAT-------GGGGCCGGATA-AAC-CA-AGGA-C---GT-TTT---ATCCAGGGGCCGAATTGGTA-GT-GGGCCGGATTTA---CGTGGAGCCGGATAGTCCATAACTCAT
gi|18861 : TATATAATAACTATTCAGTATATT-ACT-TTT-TTAATTAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATTGTCCATAACTCA--ATAA
gi|18862 : TATATAATAATTGTTATGTAT-GT-A----------AT---A-ATATAATAA-ATAA---CACTGATA-T--T-G----CT-A-TA----------TAAA-ACAGAAA---TA-------A-AAA---GTGGGACCGGATTGACCATGCTAAAT-------GGGGCCGGATT-GTC-CA-GGGG-CCG-GA-TTC----TCCA-AGGCCGTTTTGA-A-GCGGGGCCGGATT
gi|18862 : -AA----GCGGGGCCGGATTGTCCATGgtccatg
gi|18863 : tatataataattgttatgtatgtaataatataataaataacactgatattgctatataaaacagaaataaaaagtgggaccggattgaccatgctaaatggggccggattgtccaggggccggattctccaaggccgttttgTATATAATAACTATTCAGTATATT-ACT-TTT-TTAATTAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGGGCCGGATTGTTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATTGTCCATAACTCAT
gi|18864 : TATATAATAACTATTCAGTATATT-ACT-TTT-TTAATTAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATTGACCATAACTC
gi|18865 : TATATAATAATTGTTATGTAT-GT-A----------AT-----A-ATAT--A-ACAA---TT-----A-A--C-A----CTGA-TA----TTGCTATATA-A----AA---TAGAAATAAA-AA----GTGGGGCCTGATTGACCATGCTAAAT-------GGGGCCGGATT-GTC-CA-GGGG-CCG-GA-TTC----TCCA-TGGCCGTTTTGG-A-GTGGGGCCGGATTgaccttacaagtagacatgtgcttc
gi|18866 : TATATAATAACTATTTAGTATATT-ACT-TTT-TTAATTAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGAACATGCTAAAT-------TGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---ATCTAGGGGCCGGATTGGTA-GCGGGGCCAGATTTG---CGTGGGGCTGGATTGTCAATAACTCA
gi|18867 : TATATAATAACTATTCAGTATATT-A-CCTTT-TTAACTAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----A----TA-------A-AA----GTGGGGCCGGAGTGACTATGCTCAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGCGGCCGGATTGTCCATAACTC
gi|18868 : TATATAATAATTGTT----AT-GT-A-T-GT--------AAA-A-ATAT--A-ATAA---TT-----A-A--C-A----CTGA-TA----TTGCTATATA-A----AA---TAGAAATAAA-AA----GTGGG-CCGGATTGACCATGCTAAAT-------GGGGCCGGATT-GTC-CAGAGGC-C---GGATTC----TCCAGGGGCCGGATTCTC---CATGGCCGTTTTTG---AGTGGGGCCGGATTGTCCA
gi|18869 : TATATAATAACTTTTCAGTATATT-A-C-CCTATTAACTAGA-A-ATACCAA-AAAAA--TG-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATACTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---AT-TTT---GTCTAGGGGTCGGATTGGTA-GCAGGGCCGGATTTG---TGTGAGGCCGTATTGTCCATAACTCGT
gi|18870 : TATATAATAATTTTTTGATAT-TTTG-T-TTT-TTCATTAGA-A-ATACCAA-CTAA---TA-----A-A--T-G----AT-T-TA---ATT----TATA-G----AA---TA-------A-AT----GTGGGACCGGATTTACCATGCTAAAT--------GGGCCCGATTATTC-CA-AGGA-T---GT-TTC---ATCCAGGGGTCGGAT
gi|18871 : TATATAATAATTGTTAGGTAT-GT-A-T-TAA-T--ATTATA-A-ACA-----ATAC---TA-----ATA--TTG----CT-A-TATA-AAA----TATA-A----AT---AA-------A-AA----GTAGGGACAGATTGACCATGCTAAAT-------GGGGCCGGACT-CTC-CA-GGGG-C---
gi|18872 : AATAACTCC-CAATAT-TT-----------CATTAGA-A-ATCCCAA-ATAA---TA-----A-A--T-G----AT-A-TT---ATT----TTTA-A----AA---TT-------A-Acggatt
gi|18873 : tgtcgATGTAATAACCATTCAGTAT-TTTA-T-TTT-TTCATAAGA-A-ATACCAA-AAAA---AA-----A-AAAT-T----AT-A-TA---ACT----GATT-A----AA---TA-------A-AA----GTGGGGC-GGATTAACCATGCTAAAT-------GGGGCCGGATA-AAC-CA-AGGA-C---GT-TTT---ATCCAGGGACCGGATTGGTA-ATGGTGCCGGATTTG---AGTGGGGCCGGATAGTCCGTAGCTCA
gi|18874 : TAATAACTATTCAGTGT-TTTA-T-TTT-TTCATTAGA-A-ATACCAA-ATAA------------A--T-G----AT-A-TC---ATT----TATA-A----AA---TA-------A-AA----GTGGGGTCGGATAAGCCATGCTAAAT-------GGGGCCGGATA-AAC-CA-AGGA-C---GT-TTT---ATCCAAGGGCCGGAT
gi|18875 : GCTGG-TT-ATCACA-AAGA-T---AT-TTC---ATCCAGGGGCCGGATAAGTA-ATGAGGCCAGATTTA---CATGTGGCTGGATAGTCAATAACT
gi|18876 : aacagcttttcaacatttaatatgtccgaaatacccaatataaaaatctttttagaactatgtcaT-TTAACTAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATT-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGAGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGACTGTCCATAACTCATT
gi|18877 : -ATAATAA-ATAA---CACTGATA-T--T-G----CT-A-TA----------TAAA-ACAGAAA---TA-------A-AAA---GTGGGGCCGGATTGACCATGCTAAAT-------GTGGCCGGATT-GTC-CA-GGGG-CCG-GA-TTC----TCCA-TGGCCGTTTTGG-A-GTGGGGCCGGATT
gi|18878 : TATCAATATAA---TA-----A-A--T-AACACTT-A-TA----TTGCTATATA-A----AA---TAGAATTAAA-AA----GTGGGGTCGGATTGACTATGCTAAAT-------GCGGCCGGATT-CTC-CA-GTGG-CCG-GA-TTC----TCCA-TGGCCGTTTTGG-A-GTGGGGCCGGATT
gi|18879 : A-ATGA---TA-----A-A--T-AAC--CT-A-TA---TCC----TATA-A----AAAA-TA-------ACAAT---GTGGGGCCGGATGGACCATGCTAAAT-------GGGGCCGGATT-CTC-CA-GGGGCC---GG-ATA---ATCTTGGGGCCGGATTCTC---CATAGTCGTTTTGG---AATGAAACCGGATTTTCCAGGTGCCATTATAA
gi|18880 : AA-ATAACCCTA-----ATA--T-G----CT-A-TA---A---------A-A----AA---T----------------GTGGGGCTGGATGGACCATGCTAAAT-------GGGGCCGGATT-CTC-CA-GGGGCC---GG-ATA---ATCTTGGGGCCGGGTTCTC---CAAGGGCGTTTTGG---AATGGGGCCGGATTTTCCAta
gi|18881 : atgatAA-ATAACCCTA-----ATA--T-G----CT-A-TA---A-----------A----AA---T----------------GTGGGGCTGGACGGACCATGCTAAAT-------GGGGCCTGATT-ATC-CA-GGGG-CT--GG-ATA---ATCTTGGGGCCGGGTTCTCC-ATGGG--CGTTTTGG---AATGGGGCCGGATTTTCCAGGTTCCATTATAAggttccagtataata
gi|18882 : atgatTAGATA-ACAC-----TAA---TA-----T----T-G----CT-A-TATAAA-------ATAGA----AA---TA-------A-AAT---GTGGGGCCGGATTGACCATGCCAAAT-------GGGGCAGG-TT-CTC-CA-TGGC-G---GT-TTTGGAGT---GGGGCCGGATTta
gi|18883 : ataa-ATGA---TA-----A-A--T-AACCCTT-A-TA----TTGC--TATA-A----AAAATTA-------A-AAAT--GTGGGACCGGACAGACCATGCTAAAT-------GGGGCCGGATT-CTT-CA-GGGG-C---a
gi|18884 : -ATGA---TA-----A-A--T-AACC-CT-AATA---TTC----TATA-A----AA---GA-------A-AAAAACGTGGGTCTGGATGGACCATGCTAAAT-------GGGGCCGGATT-CTC-CA-GGGG-CCGGAT-TT-----TCCA-TGGCCGT-TTGGGA-TTGGGGCCAGATTTcggatt
gi|18885 : TT----TACG-A----AA---TA-------A-AAA---GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-CTC-CA-GGGGCC---GG-ATT---GTCCAGGGACCTGATT--TT-CCATGGCTGTTTTTG---AGAGGGGCCGGATTATCCAtgca
gi|18886 : aaatgttaatcattaattttTA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGTTAAAT-------GTGGCGGGATT-AAA-CA-AGGA-C---GT-TTT---GTCCAGGGGCCAGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATTGTCCATAACTC-TTA
gi|18887 : A-A----AA---GA-------A-AA----GTGGGGCCGGATGGACCATGCTAAAT-------GGGGCCGGATT-C-------------------------TCCAGGGGCCGGAT---------------AATTT------TGGGGCCGGATTCTCCAT
gi|18888 : TTCAGGGGCCGAATCAGTA-ATGGG------CTTG---CATTTGACCTGATATTCCATAACTCgg
blockSeqs : C T A TATTTTTTC T T T CCC CTGAT T AA T ACACT G A TAAA GCTA G CAGA AAT AGAAATAA C AAAAC GGATCCA AT A G C CGG A TGGAG AATAA TGT AT
blockSeqs : C T A ACTTTTTTA . . . CCC CTGAT T . . ACCCT G . TAA GCTA . CAGA AA AGAAATAA . AAT . T . . C CG . CA AGTAA . AT
blockSeqs : C T A ACTTTTTTA . . . A . T . . ACCC . . A GCTA . . . AGAATTAA . AA . T . . C CG . CA AATAA . AT
blockSeqs : C T A ACTTTTTTA . . . . . . . . ACC . . A GC . . . T . AA . T . . . CG . CA AGTAA . AT
blockSeqs : C T A ACTTTTTTA . . . . . . . . A . . A . . . . T . AT . T . . . CG . CA AATTA . AT
blockSeqs : C T A ACCTTTTTA . . . . . . . . C . . A . . . . A . AT . T . . . T . CA AGTAG . AT
blockSeqs : C T . ACCCTATTA . . . . . . . . A . . A . . . . T . AA . T . . . . . CA ATTAA . AT
blockSeqs : G T . TGTTTTTTC . . . . . . . . A . . A . . . . T . T . T . . . . . CA GGTAG . AT
blockSeqs : C T . TATTTTTTC . . . . . . . . A . . A . . . . T . T . T . . . . . TA GGTAG . AG
blockSeqs : C A . TATTTTTTC . . . . . . . . G . . A . . . . T . T . T . . . . . CA GTTAG . TG
blockSeqs : A A . TATTTTTT . . . . . . . . A . . A . . . . A . T . T . . . . . CA GGTAG . TG
blockSeqs : A G . ATTAAT . . . . . . . . A . . A . . . . T . T . A . . . . . TA GGTAG . TG
blockSeqs : A A . ATGT . . . . . . . . A . . A . . . . T . T . A . . . . . TG GGTAG . TG
blockSeqs : A A . ATT . . . . . . . . T . . A . . . . A . T . G . . . . . TG GGTAG . TG
blockSeqs : A G . C . . . . . . . . A . . A . . . . A . T . A . . . . . TG GGTAA . TG
blockSeqs : A A . C . . . . . . . . C . . A . . . . A . A . A . . . . . TA AGTAA . TG
blockSeqs : A A . C . . . . . . . . C . . A . . . . A . A . G . . . . . TG GGTAG . AG
blockSeqs : A G . C . . . . . . . . C . . A . . . . A . A . A . . . . . TG CTCCA . AG
blockSeqs : A T . C . . . . . . . . C . . A . . . . A . A . A . . . . . CA GGGAT . TG
blockSeqs : A T . C . . . . . . . . C . . A . . . . A . A . G . . . . . TA GGTAG . TT
blockSeqs : A G . T . . . . . . . . C . . A . . . . A . A . A . . . . . TA AGTAA . TT
blockSeqs : A C . C . . . . . . . . C . . A . . . . A . A . C . . . . . CA TATA . TT
blockSeqs : G A . A . . . . . . . . C . . A . . . . A . A . A . . . . . TG TACA . TA
blockSeqs : A . A . . . . . . . . C . . A . . . . T . A . A . . . . . AA GAAG . TG
blockSeqs : . . C . . . . . . . . A . . T . . . . A . A . A . . . . . AA GGAG . TC
blockSeqs : . . . . . . . . C . . A . . . . A . A . A . . . . . AA GGAG . AT
blockSeqs : . . . . . . . . A . . A . . . . A . T . G . . . . . TG GGAG .
blockSeqs : . . . . . . . A . . T . . . . A . A . C . . . . . TG CTC .
blockSeqs : . . . . . . A . . . . . . . A . A . C . . . . . C CTC
blockSeqs : . . . . . . C . . . . . . . A . A . C . . . . . C CTC
blockSeqs : . . . . . . C . . . . . . . A . A . A . . . . . C TTC
blockSeqs : . . . . . . C . . . . . . . A . A . C . . . . . C .
blockSeqs : . . . . . . C . . . . . . . A . A . C . . . . . C .
blockSeqs : . . . . . . C . . . . . . . A . A . C . . . . . .
blockSeqs : . . . . A . . . C . . . . . .
blockSeqs : . . . . . . . A . . . .
blockSeqs : . . . . . . C . . . .
blockSeqs : .
blockSeqCons :
originalCons : TATNTAATAACTNTTCAGTAT-TT-A-T-TTT-TTCATTAGA-A-ATACCAA-ATAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-NTC-CA-AGGA-C---GT-TTC---GTCCAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATNNTCCATAACTCATTATAA
finalCons : TATNTAATAACTNTTCAGTAT-TT-A-T-TTT-TTCATTAGA-A-ATACCAA-ATAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-NTC-CA-AGGA-C---GT-TTC---GTCCAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATNNTCCATAACTCATTATAA
Alignments
lowQualScore : 555555555555 11111111
lowQualScore : 1 2 9 999999999999 1 1 1 555 55555 3 11 1 99999 2 1 4444 8888 0 1 4444 333 00000000 1 99999 3333333 22 1 1 3 888 1 99999 666666 222 22
lowQualScore : . . . ............ . . . ... ..... . .. . ..... . . .... .... . . .... ... ........ . ..... ....... .. . . . ... . ..... ...... ... ..
lowQualScore : 0 5 2 222222222222 4 4 1 111 77777 4 66 1 88888 3 1 5555 6666 9 1 5555 333 77777777 0 33333 5555555 11 1 1 2 777 1 66666 000000 444 00
consensus : TATNTAATAACTNTTCAGTAT-TT-A-T-TTT-TTCATTAGA-A-ATACCAA-ATAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-NTC-CA-AGGA-C---GT-TTC---GTCCAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATNNTCCATAACTCATTATAA
Reference ( family-541 ) : TATNTAATAACTNTTCAGTAT-TT-A-T-TTT-TTCATTAGA-A-ATACCAA-ATAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-NTC-CA-AGGA-C---GT-TTC---GTCCAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATNNTCCATAACTCATTATAA
gi|18849 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGA-A-ATACCAA-ATAA---TA-----A-T--T-G----AT-A-TT---ATT----TTTA-A----AA---TT-------A-AT----TTGGGGCCAGATTTTCCATGATAA-T-------GGGGCCGGATA-TTC-CA-AGAA-C---GT-TTC---ATCCAGGGGCCGGATTAATA-ACGGGGCAGGATTTA---CATGGGGCCGGATATTCCATAACTCATTATAA
gi|18850 : TATCTAATAACTTTTCAATAT-TT-----------CATTAGA-A-ATACCAA-ATAA---TA-----A-T--T-G----AT-A-TG---ATT----TTTA-A----AA---TT-------A-AT----TTGGGGCCAAATTTTCCATGCTAAAT-------GGGGCCGGATA-TTC-CA-AGAA-C---GT-TTC---ATCCAGGGGCCGGATTAATA-ACGGGGCAGGATTTA---CATAGGGCCGGATATTCCATAACTCATTATAAcacgtggttctta
gi|18851 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGA-A-ATACCAA-ATAA---TA-----A----T-G----CT-A-TT---ATT----TCTA-A----AA---TT-------A-AT----GTGGAGCCGGATTTTCCATGCTAAAT-------GGGGCCGGATA-TTC-CA-AGAA-C---GT-TTC---ATCGAGGGGCAGGATTAGTA-ACGGGACCGGATTTA---CATGGGGCCGGATATTCCATAACTCATTATAAcacgtggttctta
gi|18852 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGA-A-ATACTAA-ATAA---TA-----A-A--T-G----AT-A-TT---ATT----TTTA-A----AA---TA-------A-AT----GTGGGACCGGATTTCCCATGCTAAAT-------GGGGCCGGATA-TTC-CA-AGAA-C---GT-TTC---ATTCATGGGCTGGATTAATA-AGGGGGCAGGATTTA---CATGGTGCCGGCTATTCCATAACTCATTATAAcacgaggttctta
gi|18853 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGA-A-ATACCAA-ATAA---TA-----A-A--T-G----AT-A-TC---ATT----TTTA-A----AA---TT-------A-AT----GTGGG-CCGGATTTTCCATGCTAAAT-------GGGGCCTGATA-TTC-CA-AGGA-T---GT-TTC---ATCCA------------------GGGGTCGGATTTA---CATGGGACCGGATATTCCATAACTCcacttggttctta
gi|18854 : TATCTAATAACTTTCTAATAT-TT-----------CATTAGA-A-TTACCAA-ATAA---TA-----A-A--T-G----AT-A-TT---ATT----TTCA-A----AA---TT-------G-AT----GTGGGCCCGAATTTTCCATGCTAAAT-------GGAACCGGATA-TTC-CA-AGGA-C---GT-TTC---ATCCAGGAGCCGGATTTATA---------------------TGGGGCCGGATATTCCATAACTC
gi|18855 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGA-A-ATACAAA-ATAA---TA-----A-A--T-G----GT-A-TT---ATT----TTTA-A----AA---TT-------A-AT----GTGGGGCTGGATTTTCCATGCTAAAT-------GGGGTC-GATA-TTC-CA-AAGA-T---GT-TTC---ATCCAGGGTCCGGGCTAGTA-AAAGGGCCGAATTTATGTCATGGCACCAGAT
gi|18856 : TATCTAATAAATTTCCAATAT-TT-----------TATTGGA-A-ATACCAA-ATAA---TA-----A-A--T-G----AT-A-TT---ATT----TTTA-A----AA---TT-------A-A-----------------------TG-----T-------GGGGCCGGATT-TTC-CA-AGGA-C---GT-TTC---ATCCAGGGGCCGGATTAATT-ACAGGGCTGGATTTA---CATGAGGCCGGATATTCCATAACTC
gi|18857 : TATGTAATAACT-TTCAATAT-TTTA-T-TTT-TTCATTAGA-A-ATACCAA-ATAA---TA-----A-A--T-G----AT-A-TA---ATT----TATA-A----AA---TA-------A-AT----GT-GGGTTGGATTTACCATGCTAAAT-------GGGGTCGGATA-TTC-CA-AGGA-T---GT-TTT---ATCCAAGGGCCGGATAAGTA-GCGGGG-AGAATTTG---AATAGGGCCGGATATTCCATAACT
gi|18858 : TATCTAATAACTTTCCAATAT-TT-----------CATTAGA-A-TGACCAA-ATGA---TA-----A-A--T-G----AT-A-TT---ATT----TTCA-A----AA---TT-------A-AT----GTGGGGCCGGATTTTCCATGTTAAATGGATCCAGGGGCCGGATA-TTC-CA-AGGA-C---GT-TTC---ATCCAGGGGACGGATT--TACATAGGGCTGGATATG---
gi|18859 : TATCTAATAACTTTCCAATAT----A-T-T------ATTAGA-A-ATACCAA-ATAA---TA-----A-A--T-G----TT-A-TT---ATT----T-TA-A----AA---TT-------A-AA----GTGGG-------------------------------GCCGGATT-TTT-CA-AGGA-C---GT-TTC---ATCCAGGGGCCGGATTATTA-ACGGGGCTGGATTTA---CATGGGGCCGGATATTCCATAACTCacataacgca
gi|18860 : TATATAATAACTATTCAGTAT-TTTA-T-TTT-TT-ATCAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----AT-A-AA---ATT----TAAA-A----AA---TA-------A-AA----GTGGGGTCGGATTTACCATGCTAAAT-------GGGGCCGGATA-AAC-CA-AGGA-C---GT-TTT---ATCCAGGGGCCGAATTGGTA-GT-GGGCCGGATTTA---CGTGGAGCCGGATAGTCCATAACTCAT
gi|18861 : TATATAATAACTATTCAGTATATT-ACT-TTT-TTAATTAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATTGTCCATAACTCA--ATAA
gi|18862 : TATATAATAATTGTTATGTAT-GT-A----------AT---A-ATATAATAA-ATAA---CACTGATA-T--T-G----CT-A-TA----------TAAA-ACAGAAA---TA-------A-AAA---GTGGGACCGGATTGACCATGCTAAAT-------GGGGCCGGATT-GTC-CA-GGGG-CCG-GA-TTC----TCCA-AGGCCGTTTTGA-A-GCGGGGCCGGATT
gi|18862 : -AA----GCGGGGCCGGATTGTCCATGgtccatg
gi|18863 : tatataataattgttatgtatgtaataatataataaataacactgatattgctatataaaacagaaataaaaagtgggaccggattgaccatgctaaatggggccggattgtccaggggccggattctccaaggccgttttgTATATAATAACTATTCAGTATATT-ACT-TTT-TTAATTAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGGGCCGGATTGTTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATTGTCCATAACTCAT
gi|18864 : TATATAATAACTATTCAGTATATT-ACT-TTT-TTAATTAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATTGACCATAACTC
gi|18865 : TATATAATAATTGTTATGTAT-GT-A----------AT-----A-ATAT--A-ACAA---TT-----A-A--C-A----CTGA-TA----TTGCTATATA-A----AA---TAGAAATAAA-AA----GTGGGGCCTGATTGACCATGCTAAAT-------GGGGCCGGATT-GTC-CA-GGGG-CCG-GA-TTC----TCCA-TGGCCGTTTTGG-A-GTGGGGCCGGATTgaccttacaagtagacatgtgcttc
gi|18866 : TATATAATAACTATTTAGTATATT-ACT-TTT-TTAATTAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGAACATGCTAAAT-------TGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---ATCTAGGGGCCGGATTGGTA-GCGGGGCCAGATTTG---CGTGGGGCTGGATTGTCAATAACTCA
gi|18867 : TATATAATAACTATTCAGTATATT-A-CCTTT-TTAACTAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATA-A----A----TA-------A-AA----GTGGGGCCGGAGTGACTATGCTCAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGGGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGCGGCCGGATTGTCCATAACTC
gi|18868 : TATATAATAATTGTT----AT-GT-A-T-GT--------AAA-A-ATAT--A-ATAA---TT-----A-A--C-A----CTGA-TA----TTGCTATATA-A----AA---TAGAAATAAA-AA----GTGGG-CCGGATTGACCATGCTAAAT-------GGGGCCGGATT-GTC-CAGAGGC-C---GGATTC----TCCAGGGGCCGGATTCTC---CATGGCCGTTTTTG---AGTGGGGCCGGATTGTCCA
gi|18869 : TATATAATAACTTTTCAGTATATT-A-C-CCTATTAACTAGA-A-ATACCAA-AAAAA--TG-----A-A--T-G----CT-A-TA---ATT----TATA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATACTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---AT-TTT---GTCTAGGGGTCGGATTGGTA-GCAGGGCCGGATTTG---TGTGAGGCCGTATTGTCCATAACTCGT
gi|18870 : TATATAATAATTTTTTGATAT-TTTG-T-TTT-TTCATTAGA-A-ATACCAA-CTAA---TA-----A-A--T-G----AT-T-TA---ATT----TATA-G----AA---TA-------A-AT----GTGGGACCGGATTTACCATGCTAAAT--------GGGCCCGATTATTC-CA-AGGA-T---GT-TTC---ATCCAGGGGTCGGAT
gi|18871 : TATATAATAATTGTTAGGTAT-GT-A-T-TAA-T--ATTATA-A-ACA-----ATAC---TA-----ATA--TTG----CT-A-TATA-AAA----TATA-A----AT---AA-------A-AA----GTAGGGACAGATTGACCATGCTAAAT-------GGGGCCGGACT-CTC-CA-GGGG-C---
gi|18872 : AATAACTCC-CAATAT-TT-----------CATTAGA-A-ATCCCAA-ATAA---TA-----A-A--T-G----AT-A-TT---ATT----TTTA-A----AA---TT-------A-Acggatt
gi|18873 : tgtcgATGTAATAACCATTCAGTAT-TTTA-T-TTT-TTCATAAGA-A-ATACCAA-AAAA---AA-----A-AAAT-T----AT-A-TA---ACT----GATT-A----AA---TA-------A-AA----GTGGGGC-GGATTAACCATGCTAAAT-------GGGGCCGGATA-AAC-CA-AGGA-C---GT-TTT---ATCCAGGGACCGGATTGGTA-ATGGTGCCGGATTTG---AGTGGGGCCGGATAGTCCGTAGCTCA
gi|18874 : TAATAACTATTCAGTGT-TTTA-T-TTT-TTCATTAGA-A-ATACCAA-ATAA------------A--T-G----AT-A-TC---ATT----TATA-A----AA---TA-------A-AA----GTGGGGTCGGATAAGCCATGCTAAAT-------GGGGCCGGATA-AAC-CA-AGGA-C---GT-TTT---ATCCAAGGGCCGGAT
gi|18875 : GCTGG-TT-ATCACA-AAGA-T---AT-TTC---ATCCAGGGGCCGGATAAGTA-ATGAGGCCAGATTTA---CATGTGGCTGGATAGTCAATAACT
gi|18876 : aacagcttttcaacatttaatatgtccgaaatacccaatataaaaatctttttagaactatgtcaT-TTAACTAGA-A-ATACCAA-AAAA---TA-----A-A--T-G----CT-A-TA---ATT----TATT-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-AAC-CA-AGGA-C---GT-TTT---GTCTAGGAGCCGGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGACTGTCCATAACTCATT
gi|18877 : -ATAATAA-ATAA---CACTGATA-T--T-G----CT-A-TA----------TAAA-ACAGAAA---TA-------A-AAA---GTGGGGCCGGATTGACCATGCTAAAT-------GTGGCCGGATT-GTC-CA-GGGG-CCG-GA-TTC----TCCA-TGGCCGTTTTGG-A-GTGGGGCCGGATT
gi|18878 : TATCAATATAA---TA-----A-A--T-AACACTT-A-TA----TTGCTATATA-A----AA---TAGAATTAAA-AA----GTGGGGTCGGATTGACTATGCTAAAT-------GCGGCCGGATT-CTC-CA-GTGG-CCG-GA-TTC----TCCA-TGGCCGTTTTGG-A-GTGGGGCCGGATT
gi|18879 : A-ATGA---TA-----A-A--T-AAC--CT-A-TA---TCC----TATA-A----AAAA-TA-------ACAAT---GTGGGGCCGGATGGACCATGCTAAAT-------GGGGCCGGATT-CTC-CA-GGGGCC---GG-ATA---ATCTTGGGGCCGGATTCTC---CATAGTCGTTTTGG---AATGAAACCGGATTTTCCAGGTGCCATTATAA
gi|18880 : AA-ATAACCCTA-----ATA--T-G----CT-A-TA---A---------A-A----AA---T----------------GTGGGGCTGGATGGACCATGCTAAAT-------GGGGCCGGATT-CTC-CA-GGGGCC---GG-ATA---ATCTTGGGGCCGGGTTCTC---CAAGGGCGTTTTGG---AATGGGGCCGGATTTTCCAta
gi|18881 : atgatAA-ATAACCCTA-----ATA--T-G----CT-A-TA---A-----------A----AA---T----------------GTGGGGCTGGACGGACCATGCTAAAT-------GGGGCCTGATT-ATC-CA-GGGG-CT--GG-ATA---ATCTTGGGGCCGGGTTCTCC-ATGGG--CGTTTTGG---AATGGGGCCGGATTTTCCAGGTTCCATTATAAggttccagtataata
gi|18882 : atgatTAGATA-ACAC-----TAA---TA-----T----T-G----CT-A-TATAAA-------ATAGA----AA---TA-------A-AAT---GTGGGGCCGGATTGACCATGCCAAAT-------GGGGCAGG-TT-CTC-CA-TGGC-G---GT-TTTGGAGT---GGGGCCGGATTta
gi|18883 : ataa-ATGA---TA-----A-A--T-AACCCTT-A-TA----TTGC--TATA-A----AAAATTA-------A-AAAT--GTGGGACCGGACAGACCATGCTAAAT-------GGGGCCGGATT-CTT-CA-GGGG-C---a
gi|18884 : -ATGA---TA-----A-A--T-AACC-CT-AATA---TTC----TATA-A----AA---GA-------A-AAAAACGTGGGTCTGGATGGACCATGCTAAAT-------GGGGCCGGATT-CTC-CA-GGGG-CCGGAT-TT-----TCCA-TGGCCGT-TTGGGA-TTGGGGCCAGATTTcggatt
gi|18885 : TT----TACG-A----AA---TA-------A-AAA---GTGGGGCCGGATTGACCATGCTAAAT-------GGGGCCGGATT-CTC-CA-GGGGCC---GG-ATT---GTCCAGGGACCTGATT--TT-CCATGGCTGTTTTTG---AGAGGGGCCGGATTATCCAtgca
gi|18886 : aaatgttaatcattaattttTA-A----AA---TA-------A-AA----GTGGGGCCGGATTGACCATGTTAAAT-------GTGGCGGGATT-AAA-CA-AGGA-C---GT-TTT---GTCCAGGGGCCAGATTGGTA-GCGGGGCCGGATTTG---CGTGGGGCCGGATTGTCCATAACTC-TTA
gi|18887 : A-A----AA---GA-------A-AA----GTGGGGCCGGATGGACCATGCTAAAT-------GGGGCCGGATT-C-------------------------TCCAGGGGCCGGAT---------------AATTT------TGGGGCCGGATTCTCCAT
gi|18888 : TTCAGGGGCCGAATCAGTA-ATGGG------CTTG---CATTTGACCTGATATTCCATAACTCgg