lowQualScore : 1111111111111
lowQualScore : 1 22 2 1 4444444444444 5555 3333
lowQualScore : . .. . . ............. .... ....
lowQualScore : 0 77 0 0 9999999999999 2222 1111
consensus : TCATGCGGACAAAAGTCG-ACG-TTTTT-CT----AA----N--TT----TT----CTGCGGACAAAAGGCGT
Reference ( gi|19910 ) : TCATGCGGACAAAAGTCG-ACG-TTTTT-CT----AA----A--TT----TT----CTGCGGATAAAAGGCGT
gi|19916 : TCTTGCGGACAAAAGTCG-ACG-TTTTT-CT----AA----A--TT----TT----CTGCGGATAAAAGGCGT
gi|19911 : TCATGCGGACAAAAGTCG-ACG-TTTTT-CT----AA----A--CT----TT----CTGCGGACAAAAGGCGT
gi|19921 : TCATGCGGACAAAAGTCG-ACG-TTTTT-AT----GA----T--TT----TT----CTGCGGACAAAAGGCGT
gi|19933 : TCATGCGGACAAAAGTCG-ACG-TTTTT-CT----AT----T--TT----TT----CTGTGGATAAAAAGCGT
gi|19923 : TCATGCGGACAAAAGGCG-TCA-TTTTT-CT----AA----A--TT----TT----CTGCAGACAAAAGGCGT
gi|19922 : TCATGCGGACAAAAAGCG-TCA-TTTTT-CT----GA----A--TT----TT----CTGCGGATAAAAGGCGT
gi|19912 : TCATGCGGACAAAAGTCG-ACG-TTTTT-GT----GA----T--TT----TT----CTGCGGACAAAAAGCGT
gi|19934 : TCATGCGGACAAAATTCG-ACG-TTTTTTCT----GA----T--TT----TT----CTGCGGACAAAAGGCGT
gi|19924 : TCATGCGGATAAAAGGCG-TCA-TTTTT-CT----AA----C--TT----TT----CTGCGGATAAAAGGCGT
gi|19913 : TCATGCGGACAAAAGGCG-TCA-TTTTT-CC----AA----A--TT----TT----CTGCGGATAAAAGTCGT
gi|19925 : TTATGCGGACAAAAGTCGGACG-TTTTT-CT----AA----T--TT----TT----TTGAGGATAAAAGGCGT
gi|19917 : TCATGCGGACAAAAGTCG-ACG-ATTTT-CT----TT----T--TT----TT----CTGCGGATAAAAAGCGT
gi|19936 : TCATGCGGATAAAAGTCG-ACG-TTTTT-CT-----A----T--TT----TT----TTGCAGATAAAAAGCGT
gi|19926 : TCATGCGGACAAAAGTCG-ACG-ATTTT-CT----TT----T--TT----TT----CTGCGGATAAAACGCGT
gi|19927 : TCATGCGGACAAAAGGCG-TCA-TTTTT-CT----AA----A--TT----TT----CTGCGGACACAATGCGT
gi|19930 : TCATGCGGACAAAAGGCG-TCA-TTTTT-CT----AT----T--TT----TT----CTGCGGACAAAAGGCGT
gi|19937 : TCATGAGGACAAAAGTCG-ACG-TTTTT--T----AT----ATTTT----TT----CTGCGGATAAAAAGCGT
gi|19931 : TCATGCGGACAAAAGGCG-TCA-TTTTT-CC----AA----A--TT----TT----CTGCGGGCAAAAGTCGT
gi|19938 : TCATGCGGACAAAAGTCG-ACGTTTTTT-CT----GATTTTT--TT----TT----TTGCGGACAAAAGGCGT
gi|19918 : TCATACGGACAAAAGGCG-TCA-TTTTT-CT----AT----T--TT----TT----CTGCGGACAAAAGGCGT
gi|19929 : TCATGCGGACAAAAGGCG-TCA-TTTTT-CT----AA----A--CT----TT----CTGCGGACAAAA
gi|19928 : TCGTGCGGACAAAAGTTG-ACGTTTTTT-TT----GT----T--TT----TT----CTGCGGATAAAAAGCGT
gi|19919 : TCATGCGGACAAAAGTCG-ACG-TTTTG-TG----AT----T--TT----TT----CTGCGGACAAAAGGAGT
gi|19920 : TCTTGCGGACAAAAGGCG-TCA-TTTTT-CC----AA----A--TT----TT----CTTCGGATAAAAGTCGT
gi|19915 : TCATGCGGACAAAAGGCG-TCA-TTTTT-CT----AT----T--TT----GT----CTGCGGACAAAAGGCGT
gi|19914 : TCGTGCGGACAAAAGTCG-ACG-ATTTT-CT-------------TTTTTCTT----CTGCGGATAAAAAGCGT
gi|19935 : TCATGCGAACAAAAGGCG-TGA-TTTTT-CC----AA----A--TT----TT----CTTCGGATAAAAGTCGT
gi|19939 : TCATGTGGACAAAAGGCG-TCA-TTTTT-CT----AT----T--TTC---TT----CTGCAGACAAAAGGCG
gi|19932 : TCATGCGGACAAAAAGCG-TCA-TTTTT-CT-------------TT----TTTTTTCTGCGGACAAAAGGCGT
gi|19940 : CATGTTGATAAAATTTG-ACG-TGTTT-CT----AT----T--TT----TT----CTGCGGACAAAATGCGT
gi|19941 : ATGCGGACAAAAGTTG-ACG-TATTT-CT-----A----T--TT----TT----CTGTGGACAAAAAGCGT
gi|19943 : ATGAAGACAAAAGTCG-ACG-TATTT-CT----AT----T--TT----TTC---CTGTGGATAAAAAGCGT
gi|19944 : ATTCGGACAAAAGTCG-ACG-TTTTT-CTAAAAAA----A--TT----TT----CTATTGATAAA
gi|19942 : ATCCGGAAAAAAATCG-ACG-TATTT-CT----AA----T--AT----TT----CTGCGGACTAAAAGCGT
gi|19945 : ATGCGGACAAAGGCCG-GCG-TATTT-C------G----A--TTTTTGTT----CTGCGGACAAAAAGCGT
gi|19946 : TGCGGACAAAAGTCG-ACG-TTTTT-CT----AA----AT-TT----TT----CTGCGGATAAAAAGCGT
gi|19947 : TGCGGACAAAAGGCG-TCG-TTTTT-CT----AA----A--CT----TT----CCGCGGATAAAAGGCGT
gi|19948 : TGCAGACAAAAGGCG-CAA-TTTTT-CC----AA----A--TT----TT----CTGCGGATAAAAGTCGT
gi|19949 : TGCGGACAAAAGTCC-ACG-TGTTT-CT----AT----T--TT----TT----CTGTCGA-AAAAAGCGT
gi|19950 : GGACAAACGTCG-ACG-TATTT-CT----AA----GT-TT----TT----CTGTCGATAAAAAGC
Alignments
lowQualScore : 0 22 2 1 1 66666666666 33 2
lowQualScore : . .. . . . ........... .. .
lowQualScore : 7 44 0 0 0 44444444444 33 0
consensus : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----TTT--TT-CTGCGGACAAAAGGCGT
Reference ( family-527 ) : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----NTT--TT-CTGCGGACAAAAGGCGT
gi|19910 : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----ATT--TT-CTGCGGATAAAAGGCGT
gi|19911 : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----ACT--TT-CTGCGGACAAAAGGCGT
gi|19912 : TCATGCGGACAAAAGTCG-ACG-TTTTT-G-T----GA----TTT--TT-CTGCGGACAAAAAGCGT
gi|19913 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-C----AA----ATT--TT-CTGCGGATAAAAGTCGT
gi|19914 : TCGTGCGGACAAAAGTCG-ACG-ATTTT-C-T----TT----TTTC-TT-CTGCGGATAAAAAGCGT
gi|19915 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AT----TTT--GT-CTGCGGACAAAAGGCGT
gi|19916 : TCTTGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----ATT--TT-CTGCGGATAAAAGGCGT
gi|19917 : TCATGCGGACAAAAGTCG-ACG-ATTTT-C-T----TT----TTT--TT-CTGCGGATAAAAAGCGT
gi|19918 : TCATACGGACAAAAGGCG-TCA-TTTTT-C-T----AT----TTT--TT-CTGCGGACAAAAGGCGT
gi|19919 : TCATGCGGACAAAAGTCG-ACG-TTTTG-T-G----AT----TTT--TT-CTGCGGACAAAAGGAGT
gi|19920 : TCTTGCGGACAAAAGGCG-TCA-TTTTT-C-C----AA----ATT--TT-CTTCGGATAAAAGTCGT
gi|19921 : TCATGCGGACAAAAGTCG-ACG-TTTTT-A-T----GA----TTT--TT-CTGCGGACAAAAGGCGT
gi|19922 : TCATGCGGACAAAAAGCG-TCA-TTTTT-C-T----GA----ATT--TT-CTGCGGATAAAAGGCGT
gi|19923 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AA----ATT--TT-CTGCAGACAAAAGGCGT
gi|19924 : TCATGCGGATAAAAGGCG-TCA-TTTTT-C-T----AA----CTT--TT-CTGCGGATAAAAGGCGT
gi|19925 : TTATGCGGACAAAAGTCGGACG-TTTTT-C-T----AA----TTT--TT-TTGAGGATAAAAGGCGT
gi|19926 : TCATGCGGACAAAAGTCG-ACG-ATTTT-C-T----TT----TTT--TT-CTGCGGATAAAACGCGT
gi|19927 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AA----ATT--TT-CTGCGGACACAATGCGT
gi|19928 : TCGTGCGGACAAAAGTTG-ACGTTTTTT-T-T----GT----TTT--TT-CTGCGGATAAAAAGCGT
gi|19929 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AA----ACT--TT-CTGCGGACAAAA
gi|19930 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AT----TTT--TT-CTGCGGACAAAAGGCGT
gi|19931 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-C----AA----ATT--TT-CTGCGGGCAAAAGTCGT
gi|19932 : TCATGCGGACAAAAAGCG-TCA-TTTTT-C-T----TT----TTT--TTTCTGCGGACAAAAGGCGT
gi|19933 : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AT----TTT--TT-CTGTGGATAAAAAGCGT
gi|19934 : TCATGCGGACAAAATTCG-ACG-TTTTTTC-T----GA----TTT--TT-CTGCGGACAAAAGGCGT
gi|19935 : TCATGCGAACAAAAGGCG-TGA-TTTTT-C-C----AA----ATT--TT-CTTCGGATAAAAGTCGT
gi|19936 : TCATGCGGATAAAAGTCG-ACG-TTTTT-C-T-----A----TTT--TT-TTGCAGATAAAAAGCGT
gi|19937 : TCATGAGGACAAAAGTCG-ACG-TTTTT-TAT----AT----TTT--TT-CTGCGGATAAAAAGCGT
gi|19938 : TCATGCGGACAAAAGTCG-ACGTTTTTT-C-T----GATTTTTTT--TT-TTGCGGACAAAAGGCGT
gi|19939 : TCATGTGGACAAAAGGCG-TCA-TTTTT-C-T----AT----TTTC-TT-CTGCAGACAAAAGGCG
gi|19940 : CATGTTGATAAAATTTG-ACG-TGTTT-C-T----AT----TTT--TT-CTGCGGACAAAATGCGT
gi|19941 : ATGCGGACAAAAGTTG-ACG-TATTT-C-T-----A----TTT--TT-CTGTGGACAAAAAGCGT
gi|19942 : ATCCGGAAAAAAATCG-ACG-TATTT-C-T----AA----TAT--TT-CTGCGGACTAAAAGCGT
gi|19943 : ATGAAGACAAAAGTCG-ACG-TATTT-C-T----AT----TTT--TTCCTGTGGATAAAAAGCGT
gi|19944 : ATTCGGACAAAAGTCG-ACG-TTTTT-C-TAAAAAA----ATT--TT-CTATTGATAAA
gi|19945 : ATGCGGACAAAGGCCG-GCG-TATTT-C-G----AT----TTTTGTT-CTGCGGACAAAAAGCGT
gi|19946 : TGCGGACAAAAGTCG-ACG-TTTTT-C-TA---AA----TTT--TT-CTGCGGATAAAAAGCGT
gi|19947 : TGCGGACAAAAGGCG-TCG-TTTTT-C-T----AA----ACT--TT-CCGCGGATAAAAGGCGT
gi|19948 : TGCAGACAAAAGGCG-CAA-TTTTT-C-C----AA----ATT--TT-CTGCGGATAAAAGTCGT
gi|19949 : TGCGGACAAAAGTCC-ACG-TGTTT-C-T----AT----TTT--TT-CTGTCGA-AAAAAGCGT
gi|19950 : GGACAAACGTCG-ACG-TATTT-C-T----AAG---TTT--TT-CTGTCGATAAAAAGC
Alignments
lowQualScore : 0 22 2 1 1 55555555555 33 1 1
lowQualScore : . .. . . . ........... .. . .
lowQualScore : 7 44 0 0 0 66666666666 33 0 0
consensus : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----TTT--T-T-CTGCGGACAAAAGGCGT
Reference ( family-527 ) : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----TTT--T-T-CTGCGGACAAAAGGCGT
gi|19910 : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----ATT--T-T-CTGCGGATAAAAGGCGT
gi|19911 : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----ACT--T-T-CTGCGGACAAAAGGCGT
gi|19912 : TCATGCGGACAAAAGTCG-ACG-TTTTT-G-T----GA----TTT--T-T-CTGCGGACAAAAAGCGT
gi|19913 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-C----AA----ATT--T-T-CTGCGGATAAAAGTCGT
gi|19914 : TCGTGCGGACAAAAGTCG-ACG-ATTTT-C-T----TT----TTTC-T-T-CTGCGGATAAAAAGCGT
gi|19915 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AT----TTT--G-T-CTGCGGACAAAAGGCGT
gi|19916 : TCTTGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----ATT--T-T-CTGCGGATAAAAGGCGT
gi|19917 : TCATGCGGACAAAAGTCG-ACG-ATTTT-C-T----TT----TTT--T-T-CTGCGGATAAAAAGCGT
gi|19918 : TCATACGGACAAAAGGCG-TCA-TTTTT-C-T----AT----TTT--T-T-CTGCGGACAAAAGGCGT
gi|19919 : TCATGCGGACAAAAGTCG-ACG-TTTTG-T-G----AT----TTT--T-T-CTGCGGACAAAAGGAGT
gi|19920 : TCTTGCGGACAAAAGGCG-TCA-TTTTT-C-C----AA----ATT--T-T-CTTCGGATAAAAGTCGT
gi|19921 : TCATGCGGACAAAAGTCG-ACG-TTTTT-A-T----GA----TTT--T-T-CTGCGGACAAAAGGCGT
gi|19922 : TCATGCGGACAAAAAGCG-TCA-TTTTT-C-T----GA----ATT--T-T-CTGCGGATAAAAGGCGT
gi|19923 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AA----ATT--T-T-CTGCAGACAAAAGGCGT
gi|19924 : TCATGCGGATAAAAGGCG-TCA-TTTTT-C-T----AA----CTT--T-T-CTGCGGATAAAAGGCGT
gi|19925 : TTATGCGGACAAAAGTCGGACG-TTTTT-C-T----AA----TTT--T-T-TTGAGGATAAAAGGCGT
gi|19926 : TCATGCGGACAAAAGTCG-ACG-ATTTT-C-T----TT----TTT--T-T-CTGCGGATAAAACGCGT
gi|19927 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AA----ATT--T-T-CTGCGGACACAATGCGT
gi|19928 : TCGTGCGGACAAAAGTTG-ACGTTTTTT-T-T----GT----TTT--T-T-CTGCGGATAAAAAGCGT
gi|19929 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AA----ACT--T-T-CTGCGGACAAAA
gi|19930 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AT----TTT--T-T-CTGCGGACAAAAGGCGT
gi|19931 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-C----AA----ATT--T-T-CTGCGGGCAAAAGTCGT
gi|19932 : TCATGCGGACAAAAAGCG-TCA-TTTTT-C-T----TT----TTT--TTT-CTGCGGACAAAAGGCGT
gi|19933 : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AT----TTT--T-T-CTGTGGATAAAAAGCGT
gi|19934 : TCATGCGGACAAAATTCG-ACG-TTTTTTC-T----GA----TTT--T-T-CTGCGGACAAAAGGCGT
gi|19935 : TCATGCGAACAAAAGGCG-TGA-TTTTT-C-C----AA----ATT--T-T-CTTCGGATAAAAGTCGT
gi|19936 : TCATGCGGATAAAAGTCG-ACG-TTTTT-C-T-----A----TTT--T-T-TTGCAGATAAAAAGCGT
gi|19937 : TCATGAGGACAAAAGTCG-ACG-TTTTT-TAT----AT----TTT--T-T-CTGCGGATAAAAAGCGT
gi|19938 : TCATGCGGACAAAAGTCG-ACGTTTTTT-C-T----GATTTTTTT--T-T-TTGCGGACAAAAGGCGT
gi|19939 : TCATGTGGACAAAAGGCG-TCA-TTTTT-C-T----AT----TTTC-T-T-CTGCAGACAAAAGGCG
gi|19940 : CATGTTGATAAAATTTG-ACG-TGTTT-C-T----AT----TTT--T-T-CTGCGGACAAAATGCGT
gi|19941 : ATGCGGACAAAAGTTG-ACG-TATTT-C-T-----A----TTT--T-T-CTGTGGACAAAAAGCGT
gi|19942 : ATCCGGAAAAAAATCG-ACG-TATTT-C-T----AA----TAT--T-T-CTGCGGACTAAAAGCGT
gi|19943 : ATGAAGACAAAAGTCG-ACG-TATTT-C-T----AT----TTT--T-TCCTGTGGATAAAAAGCGT
gi|19944 : ATTCGGACAAAAGTCG-ACG-TTTTT-C-TAAAAAA----ATT--T-T-CTATTGATAAA
gi|19945 : ATGCGGACAAAGGCCG-GCG-TATTT-C-G----AT----TTTTGT-T-CTGCGGACAAAAAGCGT
gi|19946 : TGCGGACAAAAGTCG-ACG-TTTTT-C-TA---AA----TTT--T-T-CTGCGGATAAAAAGCGT
gi|19947 : TGCGGACAAAAGGCG-TCG-TTTTT-C-T----AA----ACT--T-T-CCGCGGATAAAAGGCGT
gi|19948 : TGCAGACAAAAGGCG-CAA-TTTTT-C-C----AA----ATT--T-T-CTGCGGATAAAAGTCGT
gi|19949 : TGCGGACAAAAGTCC-ACG-TGTTT-C-T----AT----TTT--T-T-CTGTCGA-AAAAAGCGT
gi|19950 : GGACAAACGTCG-ACG-TATTT-C-T----AAG---TTT--T-T-CTGTCGATAAAAAGC
Alignments
lowQualScore : 0 22 2 1 1 55555555555 33 1 1
lowQualScore : . .. . . . ........... .. . .
lowQualScore : 7 44 0 0 0 66666666666 33 0 0
consensus : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----TTT--T-T-CTGCGGACAAAAGGCGT
Reference ( family-527 ) : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----TTT--T-T-CTGCGGACAAAAGGCGT
gi|19910 : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----ATT--T-T-CTGCGGATAAAAGGCGT
gi|19911 : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----ACT--T-T-CTGCGGACAAAAGGCGT
gi|19912 : TCATGCGGACAAAAGTCG-ACG-TTTTT-G-T----GA----TTT--T-T-CTGCGGACAAAAAGCGT
gi|19913 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-C----AA----ATT--T-T-CTGCGGATAAAAGTCGT
gi|19914 : TCGTGCGGACAAAAGTCG-ACG-ATTTT-C-T----TT----TTTC-T-T-CTGCGGATAAAAAGCGT
gi|19915 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AT----TTT--G-T-CTGCGGACAAAAGGCGT
gi|19916 : TCTTGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----ATT--T-T-CTGCGGATAAAAGGCGT
gi|19917 : TCATGCGGACAAAAGTCG-ACG-ATTTT-C-T----TT----TTT--T-T-CTGCGGATAAAAAGCGT
gi|19918 : TCATACGGACAAAAGGCG-TCA-TTTTT-C-T----AT----TTT--T-T-CTGCGGACAAAAGGCGT
gi|19919 : TCATGCGGACAAAAGTCG-ACG-TTTTG-T-G----AT----TTT--T-T-CTGCGGACAAAAGGAGT
gi|19920 : TCTTGCGGACAAAAGGCG-TCA-TTTTT-C-C----AA----ATT--T-T-CTTCGGATAAAAGTCGT
gi|19921 : TCATGCGGACAAAAGTCG-ACG-TTTTT-A-T----GA----TTT--T-T-CTGCGGACAAAAGGCGT
gi|19922 : TCATGCGGACAAAAAGCG-TCA-TTTTT-C-T----GA----ATT--T-T-CTGCGGATAAAAGGCGT
gi|19923 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AA----ATT--T-T-CTGCAGACAAAAGGCGT
gi|19924 : TCATGCGGATAAAAGGCG-TCA-TTTTT-C-T----AA----CTT--T-T-CTGCGGATAAAAGGCGT
gi|19925 : TTATGCGGACAAAAGTCGGACG-TTTTT-C-T----AA----TTT--T-T-TTGAGGATAAAAGGCGT
gi|19926 : TCATGCGGACAAAAGTCG-ACG-ATTTT-C-T----TT----TTT--T-T-CTGCGGATAAAACGCGT
gi|19927 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AA----ATT--T-T-CTGCGGACACAATGCGT
gi|19928 : TCGTGCGGACAAAAGTTG-ACGTTTTTT-T-T----GT----TTT--T-T-CTGCGGATAAAAAGCGT
gi|19929 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AA----ACT--T-T-CTGCGGACAAAA
gi|19930 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AT----TTT--T-T-CTGCGGACAAAAGGCGT
gi|19931 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-C----AA----ATT--T-T-CTGCGGGCAAAAGTCGT
gi|19932 : TCATGCGGACAAAAAGCG-TCA-TTTTT-C-T----TT----TTT--TTT-CTGCGGACAAAAGGCGT
gi|19933 : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AT----TTT--T-T-CTGTGGATAAAAAGCGT
gi|19934 : TCATGCGGACAAAATTCG-ACG-TTTTTTC-T----GA----TTT--T-T-CTGCGGACAAAAGGCGT
gi|19935 : TCATGCGAACAAAAGGCG-TGA-TTTTT-C-C----AA----ATT--T-T-CTTCGGATAAAAGTCGT
gi|19936 : TCATGCGGATAAAAGTCG-ACG-TTTTT-C-T-----A----TTT--T-T-TTGCAGATAAAAAGCGT
gi|19937 : TCATGAGGACAAAAGTCG-ACG-TTTTT-TAT----AT----TTT--T-T-CTGCGGATAAAAAGCGT
gi|19938 : TCATGCGGACAAAAGTCG-ACGTTTTTT-C-T----GATTTTTTT--T-T-TTGCGGACAAAAGGCGT
gi|19939 : TCATGTGGACAAAAGGCG-TCA-TTTTT-C-T----AT----TTTC-T-T-CTGCAGACAAAAGGCG
gi|19940 : CATGTTGATAAAATTTG-ACG-TGTTT-C-T----AT----TTT--T-T-CTGCGGACAAAATGCGT
gi|19941 : ATGCGGACAAAAGTTG-ACG-TATTT-C-T-----A----TTT--T-T-CTGTGGACAAAAAGCGT
gi|19942 : ATCCGGAAAAAAATCG-ACG-TATTT-C-T----AA----TAT--T-T-CTGCGGACTAAAAGCGT
gi|19943 : ATGAAGACAAAAGTCG-ACG-TATTT-C-T----AT----TTT--T-TCCTGTGGATAAAAAGCGT
gi|19944 : ATTCGGACAAAAGTCG-ACG-TTTTT-C-TAAAAAA----ATT--T-T-CTATTGATAAA
gi|19945 : ATGCGGACAAAGGCCG-GCG-TATTT-C-G----AT----TTTTGT-T-CTGCGGACAAAAAGCGT
gi|19946 : TGCGGACAAAAGTCG-ACG-TTTTT-C-TA---AA----TTT--T-T-CTGCGGATAAAAAGCGT
gi|19947 : TGCGGACAAAAGGCG-TCG-TTTTT-C-T----AA----ACT--T-T-CCGCGGATAAAAGGCGT
gi|19948 : TGCAGACAAAAGGCG-CAA-TTTTT-C-C----AA----ATT--T-T-CTGCGGATAAAAGTCGT
gi|19949 : TGCGGACAAAAGTCC-ACG-TGTTT-C-T----AT----TTT--T-T-CTGTCGA-AAAAAGCGT
gi|19950 : GGACAAACGTCG-ACG-TATTT-C-T----AAG---TTT--T-T-CTGTCGATAAAAAGC
blockSeqs : GA T GATTTTT TG
blockSeqs : A T AAAAAAA C
blockSeqs : A . AAAT C
blockSeqs : T . AAGT .
blockSeqs : A . AAA .
blockSeqs : T . GAT .
blockSeqs : A . AAA .
blockSeqs : A . TTT .
blockSeqs : T . ATT .
blockSeqs : A . AAA .
blockSeqs : T . TTT .
blockSeqs : A . ATT .
blockSeqs : T . ATT .
blockSeqs : T . AAA .
blockSeqs : T . GAT .
blockSeqs : A . GAA .
blockSeqs : T . AAA .
blockSeqs : A . AAC .
blockSeqs : T . AAT .
blockSeqs : T . TTT .
blockSeqs : T . AAA .
blockSeqs : T . GTT .
blockSeqs : A . AAA .
blockSeqs : A . ATT .
blockSeqs : T . AAA .
blockSeqs : A . TTT .
blockSeqs : A . ATT .
blockSeqs : A . GAT .
blockSeqs : T . AAA .
blockSeqs : A . ATT .
blockSeqs : A . ATT .
blockSeqs : A . ATT .
blockSeqs : A . AAT .
blockSeqs : A . ATT .
blockSeqs : G . ATT .
blockSeqs : A . AAA .
blockSeqs : T . AAA .
blockSeqs : C . ATT .
blockSeqs : A . AT .
blockSeqs : A . AT .
blockSeqCons :
originalCons : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----TTT--T-T-CTGCGGACAAAAGGCGT
finalCons : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----TTT--T-T-CTGCGGACAAAAGGCGT
Alignments
lowQualScore : 0 22 2 1 1 55555555555 33 1 1
lowQualScore : . .. . . . ........... .. . .
lowQualScore : 7 44 0 0 0 66666666666 33 0 0
consensus : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----TTT--T-T-CTGCGGACAAAAGGCGT
Reference ( family-527 ) : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----TTT--T-T-CTGCGGACAAAAGGCGT
gi|19910 : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----ATT--T-T-CTGCGGATAAAAGGCGT
gi|19911 : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----ACT--T-T-CTGCGGACAAAAGGCGT
gi|19912 : TCATGCGGACAAAAGTCG-ACG-TTTTT-G-T----GA----TTT--T-T-CTGCGGACAAAAAGCGT
gi|19913 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-C----AA----ATT--T-T-CTGCGGATAAAAGTCGT
gi|19914 : TCGTGCGGACAAAAGTCG-ACG-ATTTT-C-T----TT----TTTC-T-T-CTGCGGATAAAAAGCGT
gi|19915 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AT----TTT--G-T-CTGCGGACAAAAGGCGT
gi|19916 : TCTTGCGGACAAAAGTCG-ACG-TTTTT-C-T----AA----ATT--T-T-CTGCGGATAAAAGGCGT
gi|19917 : TCATGCGGACAAAAGTCG-ACG-ATTTT-C-T----TT----TTT--T-T-CTGCGGATAAAAAGCGT
gi|19918 : TCATACGGACAAAAGGCG-TCA-TTTTT-C-T----AT----TTT--T-T-CTGCGGACAAAAGGCGT
gi|19919 : TCATGCGGACAAAAGTCG-ACG-TTTTG-T-G----AT----TTT--T-T-CTGCGGACAAAAGGAGT
gi|19920 : TCTTGCGGACAAAAGGCG-TCA-TTTTT-C-C----AA----ATT--T-T-CTTCGGATAAAAGTCGT
gi|19921 : TCATGCGGACAAAAGTCG-ACG-TTTTT-A-T----GA----TTT--T-T-CTGCGGACAAAAGGCGT
gi|19922 : TCATGCGGACAAAAAGCG-TCA-TTTTT-C-T----GA----ATT--T-T-CTGCGGATAAAAGGCGT
gi|19923 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AA----ATT--T-T-CTGCAGACAAAAGGCGT
gi|19924 : TCATGCGGATAAAAGGCG-TCA-TTTTT-C-T----AA----CTT--T-T-CTGCGGATAAAAGGCGT
gi|19925 : TTATGCGGACAAAAGTCGGACG-TTTTT-C-T----AA----TTT--T-T-TTGAGGATAAAAGGCGT
gi|19926 : TCATGCGGACAAAAGTCG-ACG-ATTTT-C-T----TT----TTT--T-T-CTGCGGATAAAACGCGT
gi|19927 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AA----ATT--T-T-CTGCGGACACAATGCGT
gi|19928 : TCGTGCGGACAAAAGTTG-ACGTTTTTT-T-T----GT----TTT--T-T-CTGCGGATAAAAAGCGT
gi|19929 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AA----ACT--T-T-CTGCGGACAAAA
gi|19930 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-T----AT----TTT--T-T-CTGCGGACAAAAGGCGT
gi|19931 : TCATGCGGACAAAAGGCG-TCA-TTTTT-C-C----AA----ATT--T-T-CTGCGGGCAAAAGTCGT
gi|19932 : TCATGCGGACAAAAAGCG-TCA-TTTTT-C-T----TT----TTT--TTT-CTGCGGACAAAAGGCGT
gi|19933 : TCATGCGGACAAAAGTCG-ACG-TTTTT-C-T----AT----TTT--T-T-CTGTGGATAAAAAGCGT
gi|19934 : TCATGCGGACAAAATTCG-ACG-TTTTTTC-T----GA----TTT--T-T-CTGCGGACAAAAGGCGT
gi|19935 : TCATGCGAACAAAAGGCG-TGA-TTTTT-C-C----AA----ATT--T-T-CTTCGGATAAAAGTCGT
gi|19936 : TCATGCGGATAAAAGTCG-ACG-TTTTT-C-T-----A----TTT--T-T-TTGCAGATAAAAAGCGT
gi|19937 : TCATGAGGACAAAAGTCG-ACG-TTTTT-TAT----AT----TTT--T-T-CTGCGGATAAAAAGCGT
gi|19938 : TCATGCGGACAAAAGTCG-ACGTTTTTT-C-T----GATTTTTTT--T-T-TTGCGGACAAAAGGCGT
gi|19939 : TCATGTGGACAAAAGGCG-TCA-TTTTT-C-T----AT----TTTC-T-T-CTGCAGACAAAAGGCG
gi|19940 : CATGTTGATAAAATTTG-ACG-TGTTT-C-T----AT----TTT--T-T-CTGCGGACAAAATGCGT
gi|19941 : ATGCGGACAAAAGTTG-ACG-TATTT-C-T-----A----TTT--T-T-CTGTGGACAAAAAGCGT
gi|19942 : ATCCGGAAAAAAATCG-ACG-TATTT-C-T----AA----TAT--T-T-CTGCGGACTAAAAGCGT
gi|19943 : ATGAAGACAAAAGTCG-ACG-TATTT-C-T----AT----TTT--T-TCCTGTGGATAAAAAGCGT
gi|19944 : ATTCGGACAAAAGTCG-ACG-TTTTT-C-TAAAAAA----ATT--T-T-CTATTGATAAA
gi|19945 : ATGCGGACAAAGGCCG-GCG-TATTT-C-G----AT----TTTTGT-T-CTGCGGACAAAAAGCGT
gi|19946 : TGCGGACAAAAGTCG-ACG-TTTTT-C-TA---AA----TTT--T-T-CTGCGGATAAAAAGCGT
gi|19947 : TGCGGACAAAAGGCG-TCG-TTTTT-C-T----AA----ACT--T-T-CCGCGGATAAAAGGCGT
gi|19948 : TGCAGACAAAAGGCG-CAA-TTTTT-C-C----AA----ATT--T-T-CTGCGGATAAAAGTCGT
gi|19949 : TGCGGACAAAAGTCC-ACG-TGTTT-C-T----AT----TTT--T-T-CTGTCGA-AAAAAGCGT
gi|19950 : GGACAAACGTCG-ACG-TATTT-C-T----AAG---TTT--T-T-CTGTCGATAAAAAGC