lowQualScore : 2222 11111111 1
lowQualScore : 2 2222 222 5 111 11 1 1 00000000 11 2 1 2 33 6 111 2
lowQualScore : . .... ... . ... .. . . ........ .. . . . .. . ... .
lowQualScore : 7 5555 000 0 777 33 0 0 33333333 33 9 0 0 11 2 888 0
consensus : AGAGCGAAAGAN-CCA---TAACTCT-ATCTT---GA--ATA-A-TGACA-------GAAT--TATCT-C-C-C-CTTTTGTAC---TTT-ATTTT
Reference ( gi|79666 ) : AGAGTGAAAGGT-TCA---TAACTCT-ATCTT---GA--ATA-A-TGACA-------TAAT--TATCT-C-C-C-TTTTGGTAC---TTT-ATTTT
gi|79669 : AGAATGAACGAA-CCA---TAACTCT-ATCTT---GA--ATA-G-TGAAA-------GAAT--TATCT-C-C-C-CTTTGGTAT---TTT-ATTTT
gi|79668 : AGAGTGAAATAT-TCA---TAATTCT-ATCTT---GA--ATT-A-TGAC---------AAT--TATCT-C-C-C-TTTTTCTAC---TTT-TTTTT
gi|79667 : AGAGTGAAAG-T-ACA---TAACTCT-ATCTT---GA--ATA-A-TGACA-------GAAT----TCT-C-C-C-CTTTTGTA----TTT-ATTTT
gi|79670 : AGAGCAAAAGAA-CTG---TAATTCC-ATCTT---GA--ATA-A-TGATA-------TAAT--TATCT-C-C-C-TTTTTGTTC---TTT-ATTTT
gi|79671 : AGAGAGAAAAAT---A---TAACTCT-----T---GA--ATA-A-TGACA-------TAAT--TATCT-C-C-C-CTTTAGTAA---TTT-ATTTT
gi|79674 : AGAGTGAAAGAA-CAA---TAACTCT-GTCTT---GA--ATA-A-TGACA-------GAAT--TATCT-C-C-A-TTTT-GTGC---TTA-ATT
gi|79677 : AGAGATAAAGAT-CCG---TAACTTT-ATCTT---GA--ATA-A-TGACA-------GGGT--TATTT-C-C-C-CTTTGGTAC---TCT-TTTTT
gi|79673 : AGAATGAAAGAA-TCA---CAACTCT-TTCCT---GA--ATA-A-TGACA-------TAAA--TATCA-C-C-A-CTTTCGTAC---TTT-ATGTT
gi|79675 : AGAGCGAAA----------TAAG-CT-ATCTT---GA--ATA-A-TGACA-------GAAT--TATCT-T-C-C-CTTTTGTAC---TTT-ATTT
gi|79683 : AGAGCAAAAGAA-TCA---TAACTCT--TC------A--ATA-A-TGACA-------TAAT--TATCT-C-T-C-TTTTGTT-C---TTT-GTCTT
gi|79678 : AGAGAGAAAAAT-TTA---AAACTCT-ATCTT---GA--ATA-A-TGAC---------AAT--TATCC-C-C-C-ATTTTGTGA---TTT-AATTT
gi|79676 : AGAGTGAAAGAA-CCT---GAACTCT-ATCTT---GA--ATA-T-T-------------AT--TATCT-C-C-C-CTTTTGTAC---TTT-ATTTT
gi|79680 : AGAGCTAAAGAA-ACA---TAACTCT-ATCTT---GA--ATT-A-TGACA-------AAAT--CATCT-C-C-C-CTTTAATTT---TGT-ATTTT
gi|79688 : AGAGCGAAATGA-ACA---TAACCCTTATCTT---GA--ATA-A-TGGCA-------TAAT--TATCT-T-C-CATTTTaatttt
gi|79672 : AAAGGGAAAGAA-CCA---TCACACT-ATCTT---GA--ATA---TGACA-------AAAT--TATCT-C-C-C-TTT--GTTC---TTT-TTTTT
gi|79689 : AGAGCAAAAGAA-CCA---TAAATCC-ATGTTTATAA--AAA-A-TGACA-------GAGT--TATCC-C-C-C-TTTTTGTAC---TTT-ATTTT
gi|79682 : AGAGCGAAATAA-CTA---TAACTCT-ATGT----GACAATA-A-TGTCA-------TAAT--TATCT-C-C-T-CTTTTGTAC----TT-ATTTT
gi|79686 : AAAGGGAAATAA-TTA---TAACCCTCGTCTT---AA--ATA-A-TGGCA-------GAAT--TGTCT-C-C-T-CTTTTGTAC---CTT-ATTT
gi|79685 : AAAGGGAAATAA-TTA---TAACCCTCGTCTT---AA--ATA-A-TGGCA-------GAAT--TGTCT-C-C-T-CTTTTGTAC---CTT-ATTT
gi|79681 : AGAGTGAAAGAA-CCA---TTACTAT-GT-TC---AA--GAA-A-TGACA-------AATT--TATCT-C-C-C-ATTTTGTAC---TTT-ATTTT
gi|79691 : AGAGTGGAAG-T-GCAGAGTGACACA-ACCAT---GA--GTA-A-TGACA-------CAAT--TATCTCC-C-C-TTTTGGT-----TTT-ATT
gi|79687 : AAAATGAAAGAA-CCA---GAACTCT--TTTT---GA--ATA------CA-------GAAT--TATCT-C-CAC-TTTT-GTAT---TTT-ATTTT
gi|79679 : AGAGGGAAAAAC-ACA---TTACTCTTATCT--------A-A-A-TGACA-------GAAT--TATCT-C-C-C-CTTTTATTC---TTT-ATTTT
gi|79684 : AAAGAGAAAA-T-TCA---TATTTCT-ATCTT---GA--ATTTG-TGACA-------GAAT--TATCT-C-C-C-CTTT--------TTT-ATTT
gi|79692 : AGTGAAAGGT-TCA---TAACTCT-CTCTT---GA--ATA-A-TGACATACACTGTAAT--TATCT-C-C-C-TTTTTCTAC---TTT-ATTTTcaatt
gi|79693 : TGAAAACTATCA---GAACTCT-TTTTT---GA--ATA-A-TGACA-------CAAT--TAGCT-C-CAC-TTTT-TTAC---TTA-ATTTT
gi|79695 : AAAGGTGCCA---TGACTTT-ATCTT---GA--ATA-A-TGACA-------GAAT--TATCTCC-C-C-TTTTTATAC---TTT-ATTTT
gi|79700 : T-CCA---TAACTCT-ATCTT---GA--ATA-A-TGACA-------TAATAATATCC-C-C-C-TTTT-ATGC---CTTAATTTT
gi|79701 : CA---TAACTCT-GTTAT---GA--ATA-A-TGACA-------TTAT--TATCT-T-T-C-TTTTTATAC---TTC-ATTTT
gi|79702 : CA---TAATTTT-ATATT---GA--ATA-A-TGACA-------TAGT--TATAT-C-C-C-CTTAAATAC---CTT-ATTTT
gi|79703 : CA---GAACTTT-GTCTT---AA--ATA-A-TGACA-------GAAT--TATCT-C-A-C-ATTT-GTAC---TTT-ATTTT
gi|79696 : A---CAACTCT-ATCTG---AA--ATA-A-TGACA-------GAAT--TATCT-C-C-C-CTTTTGTAC---TTTAATTTT
gi|79699 : aaagaaca---TAACTCTTATCTT---GA--ATA-A-TGACA-------AAAC--TATCT-C-C-C-ATTTTGTAC---CTT-ATTT
gi|79698 : atttt---TAACTCT-ATCTT---GA--ATA-A-TGAC---------AAT--TATCT-T-C-C-CTTTTTTAC---TTA-ATTTT
gi|79697 : aaacattat---TAACTCT-ATCTT---GA--ATA-A-TGAC---------AAT--TATCT-T-C-C-CTTTTTTAC---TTA-ATTTT
gi|79694 : aaacattatACTTT-ATCTT---GA--ATA-A-TGACG-------GAAT--TATCTAC-T-C-TTTT-GTACAAGTTT-AT
gi|79704 : gaacaatttatgttCTCT-ATCTT---GG--AGA-A-TGACA-------TAAT--TATCT-CAC-C-CTTTTGTAC---CTT-ATTT
gi|79705 : CC-ATTTT---AA--ATA-A-TGACA-------TAAT--TGTCT-C-C-C-CTTTTGTAC---CTT-ATTTT
gi|79706 : T-ATTTT---TA--ATA-A-TGACA-------GAAT--TATCT-C-C-C-CTTCTGTAC---TTT-ATTTT
gi|79690 : T-GTCTT---GA--ATA-AATGACA-------GAAT--TGTCT-C-C-C-ATTTTGTAC---TTT-AGTTT
gi|79707 : agatggaggatacatT---GA--ATA-A-TGACA-------TAAT--TATCT-C-C-C-ATTTTGTTC---TTC-ATTTT
Alignments
lowQualScore : 4 1 333 111 4 111 11 1 1 77777777 11 1 33333 111 2
lowQualScore : . . ... ... . ... .. . . ........ .. . ..... ... .
lowQualScore : 4 4 999 999 9 777 33 0 0 11111111 33 0 33333 777 9
consensus : AGAGCGAAA-GAA-CCA---TAACTCT-ATCTT---GA--ATA-A-TGACA------G-AAT--TATCTC-CCC-----TTTTGTAC---TTT-ATTTT
Reference ( family-518 ) : AGAGCGAAA-GAN-CCA---TAACTCT-ATCTT---GA--ATA-A-TGACA------G-AAT--TATCTC-CCC-----TTTTGTAC---TTT-ATTTT
gi|79666 : AGAGTGAAA-GGT-TCA---TAACTCT-ATCTT---GA--ATA-A-TGACA------T-AAT--TATCTC-CCT-----TTTGGTAC---TTT-ATTTT
gi|79667 : AGAGTGAAA-G-T-ACA---TAACTCT-ATCTT---GA--ATA-A-TGACA------G-AAT----TCTC-CCC-----TTTTGTA----TTT-ATTTT
gi|79668 : AGAGTGAAA-TAT-TCA---TAATTCT-ATCTT---GA--ATT-A-TGAC---------AAT--TATCTC-CCT-----TTTTCTAC---TTT-TTTTT
gi|79669 : AGAATGAAC-GAA-CCA---TAACTCT-ATCTT---GA--ATA-G-TGAAA------G-AAT--TATCTC-CCC-----TTTGGTAT---TTT-ATTTT
gi|79670 : AGAGCAAAA-GAA-CTG---TAATTCC-ATCTT---GA--ATA-A-TGATA------T-AAT--TATCTC-CCT-----TTTTGTTC---TTT-ATTTT
gi|79671 : AGAGAGAAA-AAT---A---TAACTCT-----T---GA--ATA-A-TGACA------T-AAT--TATCTC-CCC-----TTTAGTAA---TTT-ATTTT
gi|79672 : AAAGGGAAA-GAA-CCA---TCACACT-ATCTT---GA--AT--A-TGACA------A-AAT--TATCTC-CC-------TTTGTTC---TTT-TTTTT
gi|79673 : AGAATGAAA-GAA-TCA---CAACTCT-TTCCT---GA--ATA-A-TGACA------T-AAA--TATCAC-CAC-----TTTCGTAC---TTT-ATGTT
gi|79674 : AGAGTGAAA-GAA-CAA---TAACTCT-GTCTT---GA--ATA-A-TGACA------G-AAT--TATCT--CCA-----TTTTGTGC---TTA-ATT
gi|79675 : AGAGCGAAA-----------TAAG-CT-ATCTT---GA--ATA-A-TGACA------G-AAT--TATCTT-CCC-----TTTTGTAC---TTT-ATTT
gi|79676 : AGAGTGAAA-GAA-CCT---GAACTCT-ATCTT---GA--ATA-T-T-------------AT--TATCTC-CCC-----TTTTGTAC---TTT-ATTTT
gi|79677 : AGAGATAAA-GAT-CCG---TAACTTT-ATCTT---GA--ATA-A-TGACA------G-GGT--TATTTC-CCC-----TTTGGTAC---TCT-TTTTT
gi|79678 : AGAGAGAAA-AAT-TTA---AAACTCT-ATCTT---GA--ATA-A-TGAC---------AAT--TATCCC-CCA-----TTTTGTGA---TTT-AATTT
gi|79679 : AGAGGGAAA-AAC-ACA---TTACTCTTATCT--------A-A-A-TGACA------G-AAT--TATCTC-CCC-----TTTTATTC---TTT-ATTTT
gi|79680 : AGAGCTAAA-GAA-ACA---TAACTCT-ATCTT---GA--ATT-A-TGACA------A-AAT--CATCTC-CCCTTTAATTTTGTAT---TTTAATTTT
gi|79681 : AGAGTGAAA-GAA-CCA---TTACTAT-GT-TC---AA--GAA-A-TGACA------A-ATT--TATCTC-CCA-----TTTTGTAC---TTT-ATTTT
gi|79682 : AGAGCGAAA-TAA-CTA---TAACTCT-ATGT----GACAATA-A-TGTCA------T-AAT--TATCTC-CTC-----TTTTGTAC----TT-ATTTT
gi|79683 : AGAGCAAAA-GAA-TCA---TAACTCT--TC------A--ATA-A-TGACA------T-AAT--TATCT--CTC-----TTTTGTTC---TTT-GTCTT
gi|79684 : AAAGAGAAA--AT-TCA---TATTTCT-ATCTT---GA--ATTTG-TGACA------G-AAT--TATCTC-CCC-----TTTTTTAT---TTC-AATT
gi|79685 : AAAGGGAAA-TAA-TTA---TAACCCTCGTCTT---AA--ATA-A-TGGCA------G-AAT--TGTCTC-CTC-----TTTTGTAC---CTT-ATTT
gi|79686 : AAAGGGAAA-TAA-TTA---TAACCCTCGTCTT---AA--ATA-A-TGGCA------G-AAT--TGTCTC-CTC-----TTTTGTAC---CTT-ATTT
gi|79687 : GAAA-GAA-CCA---GAACTCT--TTTT---GA--ATA------CA------G-AAT--TATCTC-CAC-----TTTTGTAT---TTT-ATTTT
gi|79688 : aaaatAGAGCGAAATGAA-C-A---TAACCCTTATCTT---GA--ATA-A-TGGCA------T-AAT--TATCTT-CCA-----TTTT
gi|79689 : AGAGCAAAA-GAA-CCA---TAAATCC-ATGTTTATAA--AAA-A-TGACA------G-AGT--TATCCC-CCT-----TTTTGTAC---TTT-ATTTT
gi|79690 : T-GTCTT---GA--ATA-AATGACA------G-AAT--TGTCTC-CCA-----TTTTGTAC---TTT-AGTTT
gi|79691 : agatggaggatacatAGAGTGGAA-G-T-GCAGAGTGACACA-ACCAT---GA--GTA-A-TGACA------C-AAT--TATCTC-CCC-----TTTTG-GT---TTT-ATT
gi|79692 : AGTGAAA-GGT-TCA---TAACTCT-CTCTT---GA--ATA-A-TGACATACACTGTAAT--TATCTC-CCT-----TTTTCTAC---TTT-ATTTT
gi|79693 : CA---GAACTCT-TTTTT---GA--ATA-A-TGACA------C-AAT--TAGCTC-CAC-----TTTTTTAC---TTA-ATTTT
gi|79694 : tgaaaactatACTTT-ATCTT---GA--ATA-A-TGACG------G-AAT--TATCTA-CTC-----TTTTGTACAAGTTT-AT
gi|79695 : gaacaatttatgttAAA-GGTGCCA---TGACTTT-ATCTT---GA--ATA-A-TGACA------G-AAT--TATCTC-CCCT----TTTTATAC---TTT-ATTTT
gi|79696 : AAA-GAA-CAA---CAACTCT-ATCTG---AA--ATA-A-TGACA------G-AAT--TATCTC-CCC-----TTTTGTAC---TTTAATTTT
gi|79697 : ---TAACTCT-ATCTT---GA--ATA-A-TGAC---------AAT--TATCTT-CCC-----TTTTTTAC---TTA-ATTTT
gi|79698 : aaacattat---TAACTCT-ATCTT---GA--ATA-A-TGAC---------AAT--TATCTT-CCC-----TTTTTTAC---TTA-ATTTT
gi|79699 : aaacattat---TAACTCTTATCTT---GA--ATA-A-TGACA------A-AAC--TATCTC-CCA-----TTTTGTAC---CTT-ATTT
gi|79700 : atttt-CCA---TAACTCT-ATCTT---GA--ATA-A-TGACA------T-AATAATATC-C-CCC-----TTTTATGC---CTTAATTTT
gi|79701 : tCA---TAACTCT-GTTAT---GA--ATA-A-TGACA------T-TAT--TATCTT-TCT-----TTTTATAC---TTC-ATTTT
gi|79702 : CA---TAATTTT-ATATT---GA--ATA-A-TGACA------T-AGT--TATATC-CCC-----TTAAATAC---CTT-ATTTT
gi|79703 : CA---GAACTTT-GTCTT---AA--ATA-A-TGACA------G-AAT--TATCTC-ACA------TTTGTAC---TTT-ATTTT
gi|79704 : CTCT-ATCTT---GG--AGA-A-TGACA------T-AAT--TATCTCACCC-----TTTTGTAC---CTT-ATTT
gi|79705 : CC-ATTTT---AA--ATA-A-TGACA------T-AAT--TGTCTC-CCC-----TTTTGTAC---CTT-ATTTT
gi|79706 : T-ATTTT---TA--ATA-A-TGACA------G-AAT--TATCTC-CCC-----TTCTGTAC---TTT-ATTTT
gi|79707 : T---GA--ATA-A-TGACA------T-AAT--TATCTC-CCA-----TTTTGTTC---TTC-ATTTT
Alignments
lowQualScore : 4 33 1 111 4 111 11 1 1 77777777 11 1 33333 111 2
lowQualScore : . .. . ... . ... .. . . ........ .. . ..... ... .
lowQualScore : 4 00 2 999 9 777 33 0 0 11111111 33 0 33333 777 9
consensus : AGAGCGAAA-GAAC-CAT---AACTCT-ATCTT---GA--ATA-A-TGACA------G-AAT--TATCTC-CCC-----TTTTGTAC---TTT-ATTTT
Reference ( family-518 ) : AGAGCGAAA-GAAC-CAT---AACTCT-ATCTT---GA--ATA-A-TGACA------G-AAT--TATCTC-CCC-----TTTTGTAC---TTT-ATTTT
gi|79666 : AGAGTGAAA-GGTT-CAT---AACTCT-ATCTT---GA--ATA-A-TGACA------T-AAT--TATCTC-CCT-----TTTGGTAC---TTT-ATTTT
gi|79667 : AGAGTGAAA-GTAC--AT---AACTCT-ATCTT---GA--ATA-A-TGACA------G-AAT----TCTC-CCC-----TTTTGTA----TTT-ATTTT
gi|79668 : AGAGTGAAA-TATT-CAT---AATTCT-ATCTT---GA--ATT-A-TGAC---------AAT--TATCTC-CCT-----TTTTCTAC---TTT-TTTTT
gi|79669 : AGAATGAAC-GAAC-CAT---AACTCT-ATCTT---GA--ATA-G-TGAAA------G-AAT--TATCTC-CCC-----TTTGGTAT---TTT-ATTTT
gi|79670 : AGAGCAAAA-GAAC-TGT---AATTCC-ATCTT---GA--ATA-A-TGATA------T-AAT--TATCTC-CCT-----TTTTGTTC---TTT-ATTTT
gi|79671 : AGAGAGAAA-AA---TAT---AACTCT-----T---GA--ATA-A-TGACA------T-AAT--TATCTC-CCC-----TTTAGTAA---TTT-ATTTT
gi|79672 : AAAGGGAAA-GAAC-CAT---CACACT-ATCTT---GA--AT--A-TGACA------A-AAT--TATCTC-CC-------TTTGTTC---TTT-TTTTT
gi|79673 : AGAATGAAA-GAAT-CAC---AACTCT-TTCCT---GA--ATA-A-TGACA------T-AAA--TATCAC-CAC-----TTTCGTAC---TTT-ATGTT
gi|79674 : AGAGTGAAA-GAAC-AAT---AACTCT-GTCTT---GA--ATA-A-TGACA------G-AAT--TATCT--CCA-----TTTTGTGC---TTA-ATT
gi|79675 : AGAGCGAAA--------T---AAG-CT-ATCTT---GA--ATA-A-TGACA------G-AAT--TATCTT-CCC-----TTTTGTAC---TTT-ATTT
gi|79676 : AGAGTGAAA-GAAC-CTG---AACTCT-ATCTT---GA--ATA-T-T-------------AT--TATCTC-CCC-----TTTTGTAC---TTT-ATTTT
gi|79677 : AGAGATAAA-GATC-CGT---AACTTT-ATCTT---GA--ATA-A-TGACA------G-GGT--TATTTC-CCC-----TTTGGTAC---TCT-TTTTT
gi|79678 : AGAGAGAAA-AATT-TAA---AACTCT-ATCTT---GA--ATA-A-TGAC---------AAT--TATCCC-CCA-----TTTTGTGA---TTT-AATTT
gi|79679 : AGAGGGAAA--AACACAT---TACTCTTATCT--------A-A-A-TGACA------G-AAT--TATCTC-CCC-----TTTTATTC---TTT-ATTTT
gi|79680 : AGAGCTAAA-GAAA-CAT---AACTCT-ATCTT---GA--ATT-A-TGACA------A-AAT--CATCTC-CCCTTTAATTTTGTAT---TTTAATTTT
gi|79681 : AGAGTGAAA-GAAC-CAT---TACTAT-GT-TC---AA--GAA-A-TGACA------A-ATT--TATCTC-CCA-----TTTTGTAC---TTT-ATTTT
gi|79682 : AGAGCGAAA-TAAC-TAT---AACTCT-ATGT----GACAATA-A-TGTCA------T-AAT--TATCTC-CTC-----TTTTGTAC----TT-ATTTT
gi|79683 : AGAGCAAAA-GAAT-CAT---AACTCT--TC------A--ATA-A-TGACA------T-AAT--TATCT--CTC-----TTTTGTTC---TTT-GTCTT
gi|79684 : AAAGAGAAA--ATT-CAT---ATTTCT-ATCTT---GA--ATTTG-TGACA------G-AAT--TATCTC-CCC-----TTTTTTAT---TTC-AATT
gi|79685 : AAAGGGAAA-TAAT-TAT---AACCCTCGTCTT---AA--ATA-A-TGGCA------G-AAT--TGTCTC-CTC-----TTTTGTAC---CTT-ATTT
gi|79686 : AAAGGGAAA-TAAT-TAT---AACCCTCGTCTT---AA--ATA-A-TGGCA------G-AAT--TGTCTC-CTC-----TTTTGTAC---CTT-ATTT
gi|79687 : GAAA-GAAC-CAG---AACTCT--TTTT---GA--ATA------CA------G-AAT--TATCTC-CAC-----TTTTGTAT---TTT-ATTTT
gi|79688 : aaaatAGAGCGAAATGAAC--AT---AACCCTTATCTT---GA--ATA-A-TGGCA------T-AAT--TATCTT-CCA-----TTTT
gi|79689 : AGAGCAAAA-GAAC-CAT---AAATCC-ATGTTTATAA--AAA-A-TGACA------G-AGT--TATCCC-CCT-----TTTTGTAC---TTT-ATTTT
gi|79690 : T-GTCTT---GA--ATA-AATGACA------G-AAT--TGTCTC-CCA-----TTTTGTAC---TTT-AGTTT
gi|79691 : agatggaggatacatAGAGTGACA-CAAC-CAT------------------GA--GTA-A-TGACA------C-AAT--TATCTC-CCC-----TTTTG-GT---TTT-ATT
gi|79692 : agagtggaagtgcAGTGAAA-GGTT-CAT---AACTCT-CTCTT---GA--ATA-A-TGACATACACTGTAAT--TATCTC-CCT-----TTTTCTAC---TTT-ATTTT
gi|79693 : A-AAAC-TATCAGAACTCT-TTTTT---GA--ATA-A-TGACA------C-AAT--TAGCTC-CAC-----TTTTTTAC---TTA-ATTTT
gi|79694 : tgACTTT-ATCTT---GA--ATA-A-TGACG------G-AAT--TATCTA-CTC-----TTTTGTACAAGTTT-AT
gi|79695 : gaacaatttatgttC-CAT---GACTTT-ATCTT---GA--ATA-A-TGACA------G-AAT--TATCTC-CCCT----TTTTATAC---TTT-ATTTT
gi|79696 : aaaggtgAAA-GAAC-AAC---AACTCT-ATCTG---AA--ATA-A-TGACA------G-AAT--TATCTC-CCC-----TTTTGTAC---TTTAATTTT
gi|79697 : T---AACTCT-ATCTT---GA--ATA-A-TGAC---------AAT--TATCTT-CCC-----TTTTTTAC---TTA-ATTTT
gi|79698 : aaacattatT---AACTCT-ATCTT---GA--ATA-A-TGAC---------AAT--TATCTT-CCC-----TTTTTTAC---TTA-ATTTT
gi|79699 : aaacattatT---AACTCTTATCTT---GA--ATA-A-TGACA------A-AAC--TATCTC-CCA-----TTTTGTAC---CTT-ATTT
gi|79700 : attttC-CAT---AACTCT-ATCTT---GA--ATA-A-TGACA------T-AATAATATC-C-CCC-----TTTTATGC---CTTAATTTT
gi|79701 : t-CAT---AACTCT-GTTAT---GA--ATA-A-TGACA------T-TAT--TATCTT-TCT-----TTTTATAC---TTC-ATTTT
gi|79702 : -CAT---AATTTT-ATATT---GA--ATA-A-TGACA------T-AGT--TATATC-CCC-----TTAAATAC---CTT-ATTTT
gi|79703 : -CAG---AACTTT-GTCTT---AA--ATA-A-TGACA------G-AAT--TATCTC-ACA------TTTGTAC---TTT-ATTTT
gi|79704 : CTCT-ATCTT---GG--AGA-A-TGACA------T-AAT--TATCTCACCC-----TTTTGTAC---CTT-ATTT
gi|79705 : CC-ATTTT---AA--ATA-A-TGACA------T-AAT--TGTCTC-CCC-----TTTTGTAC---CTT-ATTTT
gi|79706 : T-ATTTT---TA--ATA-A-TGACA------G-AAT--TATCTC-CCC-----TTCTGTAC---TTT-ATTTT
gi|79707 : T---GA--ATA-A-TGACA------T-AAT--TATCTC-CCA-----TTTTGTTC---TTC-ATTTT
Alignments
lowQualScore : 4 33 1 111 4 111 11 1 1 77777777 11 1 33333 111 2
lowQualScore : . .. . ... . ... .. . . ........ .. . ..... ... .
lowQualScore : 4 00 2 999 9 777 33 0 0 11111111 33 0 33333 777 9
consensus : AGAGCGAAA-GAAC-CAT---AACTCT-ATCTT---GA--ATA-A-TGACA------G-AAT--TATCTC-CCC-----TTTTGTAC---TTT-ATTTT
Reference ( family-518 ) : AGAGCGAAA-GAAC-CAT---AACTCT-ATCTT---GA--ATA-A-TGACA------G-AAT--TATCTC-CCC-----TTTTGTAC---TTT-ATTTT
gi|79666 : AGAGTGAAA-GGTT-CAT---AACTCT-ATCTT---GA--ATA-A-TGACA------T-AAT--TATCTC-CCT-----TTTGGTAC---TTT-ATTTT
gi|79667 : AGAGTGAAA-GTAC--AT---AACTCT-ATCTT---GA--ATA-A-TGACA------G-AAT----TCTC-CCC-----TTTTGTA----TTT-ATTTT
gi|79668 : AGAGTGAAA-TATT-CAT---AATTCT-ATCTT---GA--ATT-A-TGAC---------AAT--TATCTC-CCT-----TTTTCTAC---TTT-TTTTT
gi|79669 : AGAATGAAC-GAAC-CAT---AACTCT-ATCTT---GA--ATA-G-TGAAA------G-AAT--TATCTC-CCC-----TTTGGTAT---TTT-ATTTT
gi|79670 : AGAGCAAAA-GAAC-TGT---AATTCC-ATCTT---GA--ATA-A-TGATA------T-AAT--TATCTC-CCT-----TTTTGTTC---TTT-ATTTT
gi|79671 : AGAGAGAAA-AA---TAT---AACTCT-----T---GA--ATA-A-TGACA------T-AAT--TATCTC-CCC-----TTTAGTAA---TTT-ATTTT
gi|79672 : AAAGGGAAA-GAAC-CAT---CACACT-ATCTT---GA--AT--A-TGACA------A-AAT--TATCTC-CC-------TTTGTTC---TTT-TTTTT
gi|79673 : AGAATGAAA-GAAT-CAC---AACTCT-TTCCT---GA--ATA-A-TGACA------T-AAA--TATCAC-CAC-----TTTCGTAC---TTT-ATGTT
gi|79674 : AGAGTGAAA-GAAC-AAT---AACTCT-GTCTT---GA--ATA-A-TGACA------G-AAT--TATCT--CCA-----TTTTGTGC---TTA-ATT
gi|79675 : AGAGCGAAA--------T---AAG-CT-ATCTT---GA--ATA-A-TGACA------G-AAT--TATCTT-CCC-----TTTTGTAC---TTT-ATTT
gi|79676 : AGAGTGAAA-GAAC-CTG---AACTCT-ATCTT---GA--ATA-T-T-------------AT--TATCTC-CCC-----TTTTGTAC---TTT-ATTTT
gi|79677 : AGAGATAAA-GATC-CGT---AACTTT-ATCTT---GA--ATA-A-TGACA------G-GGT--TATTTC-CCC-----TTTGGTAC---TCT-TTTTT
gi|79678 : AGAGAGAAA-AATT-TAA---AACTCT-ATCTT---GA--ATA-A-TGAC---------AAT--TATCCC-CCA-----TTTTGTGA---TTT-AATTT
gi|79679 : AGAGGGAAA--AACACAT---TACTCTTATCT--------A-A-A-TGACA------G-AAT--TATCTC-CCC-----TTTTATTC---TTT-ATTTT
gi|79680 : AGAGCTAAA-GAAA-CAT---AACTCT-ATCTT---GA--ATT-A-TGACA------A-AAT--CATCTC-CCCTTTAATTTTGTAT---TTTAATTTT
gi|79681 : AGAGTGAAA-GAAC-CAT---TACTAT-GT-TC---AA--GAA-A-TGACA------A-ATT--TATCTC-CCA-----TTTTGTAC---TTT-ATTTT
gi|79682 : AGAGCGAAA-TAAC-TAT---AACTCT-ATGT----GACAATA-A-TGTCA------T-AAT--TATCTC-CTC-----TTTTGTAC----TT-ATTTT
gi|79683 : AGAGCAAAA-GAAT-CAT---AACTCT--TC------A--ATA-A-TGACA------T-AAT--TATCT--CTC-----TTTTGTTC---TTT-GTCTT
gi|79684 : AAAGAGAAA--ATT-CAT---ATTTCT-ATCTT---GA--ATTTG-TGACA------G-AAT--TATCTC-CCC-----TTTTTTAT---TTC-AATT
gi|79685 : AAAGGGAAA-TAAT-TAT---AACCCTCGTCTT---AA--ATA-A-TGGCA------G-AAT--TGTCTC-CTC-----TTTTGTAC---CTT-ATTT
gi|79686 : AAAGGGAAA-TAAT-TAT---AACCCTCGTCTT---AA--ATA-A-TGGCA------G-AAT--TGTCTC-CTC-----TTTTGTAC---CTT-ATTT
gi|79687 : GAAA-GAAC-CAG---AACTCT--TTTT---GA--ATA------CA------G-AAT--TATCTC-CAC-----TTTTGTAT---TTT-ATTTT
gi|79688 : aaaatAGAGCGAAATGAAC--AT---AACCCTTATCTT---GA--ATA-A-TGGCA------T-AAT--TATCTT-CCA-----TTTT
gi|79689 : AGAGCAAAA-GAAC-CAT---AAATCC-ATGTTTATAA--AAA-A-TGACA------G-AGT--TATCCC-CCT-----TTTTGTAC---TTT-ATTTT
gi|79690 : T-GTCTT---GA--ATA-AATGACA------G-AAT--TGTCTC-CCA-----TTTTGTAC---TTT-AGTTT
gi|79691 : agatggaggatacatAGAGTGACA-CAAC-CAT------------------GA--GTA-A-TGACA------C-AAT--TATCTC-CCC-----TTTTG-GT---TTT-ATT
gi|79692 : agagtggaagtgcAGTGAAA-GGTT-CAT---AACTCT-CTCTT---GA--ATA-A-TGACATACACTGTAAT--TATCTC-CCT-----TTTTCTAC---TTT-ATTTT
gi|79693 : A-AAAC-TATCAGAACTCT-TTTTT---GA--ATA-A-TGACA------C-AAT--TAGCTC-CAC-----TTTTTTAC---TTA-ATTTT
gi|79694 : tgACTTT-ATCTT---GA--ATA-A-TGACG------G-AAT--TATCTA-CTC-----TTTTGTACAAGTTT-AT
gi|79695 : gaacaatttatgttC-CAT---GACTTT-ATCTT---GA--ATA-A-TGACA------G-AAT--TATCTC-CCCT----TTTTATAC---TTT-ATTTT
gi|79696 : aaaggtgAAA-GAAC-AAC---AACTCT-ATCTG---AA--ATA-A-TGACA------G-AAT--TATCTC-CCC-----TTTTGTAC---TTTAATTTT
gi|79697 : T---AACTCT-ATCTT---GA--ATA-A-TGAC---------AAT--TATCTT-CCC-----TTTTTTAC---TTA-ATTTT
gi|79698 : aaacattatT---AACTCT-ATCTT---GA--ATA-A-TGAC---------AAT--TATCTT-CCC-----TTTTTTAC---TTA-ATTTT
gi|79699 : aaacattatT---AACTCTTATCTT---GA--ATA-A-TGACA------A-AAC--TATCTC-CCA-----TTTTGTAC---CTT-ATTT
gi|79700 : attttC-CAT---AACTCT-ATCTT---GA--ATA-A-TGACA------T-AATAATATC-C-CCC-----TTTTATGC---CTTAATTTT
gi|79701 : t-CAT---AACTCT-GTTAT---GA--ATA-A-TGACA------T-TAT--TATCTT-TCT-----TTTTATAC---TTC-ATTTT
gi|79702 : -CAT---AATTTT-ATATT---GA--ATA-A-TGACA------T-AGT--TATATC-CCC-----TTAAATAC---CTT-ATTTT
gi|79703 : -CAG---AACTTT-GTCTT---AA--ATA-A-TGACA------G-AAT--TATCTC-ACA------TTTGTAC---TTT-ATTTT
gi|79704 : CTCT-ATCTT---GG--AGA-A-TGACA------T-AAT--TATCTCACCC-----TTTTGTAC---CTT-ATTT
gi|79705 : CC-ATTTT---AA--ATA-A-TGACA------T-AAT--TGTCTC-CCC-----TTTTGTAC---CTT-ATTTT
gi|79706 : T-ATTTT---TA--ATA-A-TGACA------G-AAT--TATCTC-CCC-----TTCTGTAC---TTT-ATTTT
gi|79707 : T---GA--ATA-A-TGACA------T-AAT--TATCTC-CCA-----TTTTGTTC---TTC-ATTTT
blockSeqs : T TG A CAG T TAT CA TACACTGT AA TTTAA AAG A
blockSeqs : T G . . C . . G . T . A
blockSeqs : T T . . C . . G . . . A
blockSeqs : C G . . T . . T . . . .
blockSeqs : A G . . T . . T . . . .
blockSeqs : G A . . . . . A . . . .
blockSeqs : T G . . . . . T . . . .
blockSeqs : T G . . . . . G . . . .
blockSeqs : C G . . . . . G . . . .
blockSeqs : T G . . . . . G . . . .
blockSeqs : A G . . . . . G . . . .
blockSeqs : A A . . . . . A . . . .
blockSeqs : G G . . . . . A . . . .
blockSeqs : C G . . . . . T . . . .
blockSeqs : T T . . . . . T . . . .
blockSeqs : C G . . . . . G . . . .
blockSeqs : C T . . . . . G . . . .
blockSeqs : A T . . . . . G . . . .
blockSeqs : G G . . . . . G . . . .
blockSeqs : G G . . . . . T . . . .
blockSeqs : C C . . . . . G . . . .
blockSeqs : C G . . . . . G . . . .
blockSeqs : T A . . . . . C . . . .
blockSeqs : T G . . . . . C . . . .
blockSeqs : . . . . . . G . . . .
blockSeqs : . . . . . . G . . . .
blockSeqs : . . . . . . G . . . .
blockSeqs : . . . . . A . . . .
blockSeqs : . . . . . T . . . .
blockSeqs : . . . . . T . . . .
blockSeqs : . . . . . T . . . .
blockSeqs : . . . . . G . . . .
blockSeqs : . . . . T . . . .
blockSeqs : . . . . T . . . .
blockSeqs : . . . . G . . . .
blockSeqs : . . . T . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : AGAGCGAAA-GAAC-CAT---AACTCT-ATCTT---GA--ATA-A-TGACA------G-AAT--TATCTC-CCC-----TTTTGTAC---TTT-ATTTT
finalCons : AGAGCGAAA-GAAC-CAT---AACTCT-ATCTT---GA--ATA-A-TGACA------G-AAT--TATCTC-CCC-----TTTTGTAC---TTT-ATTTT
Alignments
lowQualScore : 4 33 1 111 4 111 11 1 1 77777777 11 1 33333 111 2
lowQualScore : . .. . ... . ... .. . . ........ .. . ..... ... .
lowQualScore : 4 00 2 999 9 777 33 0 0 11111111 33 0 33333 777 9
consensus : AGAGCGAAA-GAAC-CAT---AACTCT-ATCTT---GA--ATA-A-TGACA------G-AAT--TATCTC-CCC-----TTTTGTAC---TTT-ATTTT
Reference ( family-518 ) : AGAGCGAAA-GAAC-CAT---AACTCT-ATCTT---GA--ATA-A-TGACA------G-AAT--TATCTC-CCC-----TTTTGTAC---TTT-ATTTT
gi|79666 : AGAGTGAAA-GGTT-CAT---AACTCT-ATCTT---GA--ATA-A-TGACA------T-AAT--TATCTC-CCT-----TTTGGTAC---TTT-ATTTT
gi|79667 : AGAGTGAAA-GTAC--AT---AACTCT-ATCTT---GA--ATA-A-TGACA------G-AAT----TCTC-CCC-----TTTTGTA----TTT-ATTTT
gi|79668 : AGAGTGAAA-TATT-CAT---AATTCT-ATCTT---GA--ATT-A-TGAC---------AAT--TATCTC-CCT-----TTTTCTAC---TTT-TTTTT
gi|79669 : AGAATGAAC-GAAC-CAT---AACTCT-ATCTT---GA--ATA-G-TGAAA------G-AAT--TATCTC-CCC-----TTTGGTAT---TTT-ATTTT
gi|79670 : AGAGCAAAA-GAAC-TGT---AATTCC-ATCTT---GA--ATA-A-TGATA------T-AAT--TATCTC-CCT-----TTTTGTTC---TTT-ATTTT
gi|79671 : AGAGAGAAA-AA---TAT---AACTCT-----T---GA--ATA-A-TGACA------T-AAT--TATCTC-CCC-----TTTAGTAA---TTT-ATTTT
gi|79672 : AAAGGGAAA-GAAC-CAT---CACACT-ATCTT---GA--AT--A-TGACA------A-AAT--TATCTC-CC-------TTTGTTC---TTT-TTTTT
gi|79673 : AGAATGAAA-GAAT-CAC---AACTCT-TTCCT---GA--ATA-A-TGACA------T-AAA--TATCAC-CAC-----TTTCGTAC---TTT-ATGTT
gi|79674 : AGAGTGAAA-GAAC-AAT---AACTCT-GTCTT---GA--ATA-A-TGACA------G-AAT--TATCT--CCA-----TTTTGTGC---TTA-ATT
gi|79675 : AGAGCGAAA--------T---AAG-CT-ATCTT---GA--ATA-A-TGACA------G-AAT--TATCTT-CCC-----TTTTGTAC---TTT-ATTT
gi|79676 : AGAGTGAAA-GAAC-CTG---AACTCT-ATCTT---GA--ATA-T-T-------------AT--TATCTC-CCC-----TTTTGTAC---TTT-ATTTT
gi|79677 : AGAGATAAA-GATC-CGT---AACTTT-ATCTT---GA--ATA-A-TGACA------G-GGT--TATTTC-CCC-----TTTGGTAC---TCT-TTTTT
gi|79678 : AGAGAGAAA-AATT-TAA---AACTCT-ATCTT---GA--ATA-A-TGAC---------AAT--TATCCC-CCA-----TTTTGTGA---TTT-AATTT
gi|79679 : AGAGGGAAA--AACACAT---TACTCTTATCT--------A-A-A-TGACA------G-AAT--TATCTC-CCC-----TTTTATTC---TTT-ATTTT
gi|79680 : AGAGCTAAA-GAAA-CAT---AACTCT-ATCTT---GA--ATT-A-TGACA------A-AAT--CATCTC-CCCTTTAATTTTGTAT---TTTAATTTT
gi|79681 : AGAGTGAAA-GAAC-CAT---TACTAT-GT-TC---AA--GAA-A-TGACA------A-ATT--TATCTC-CCA-----TTTTGTAC---TTT-ATTTT
gi|79682 : AGAGCGAAA-TAAC-TAT---AACTCT-ATGT----GACAATA-A-TGTCA------T-AAT--TATCTC-CTC-----TTTTGTAC----TT-ATTTT
gi|79683 : AGAGCAAAA-GAAT-CAT---AACTCT--TC------A--ATA-A-TGACA------T-AAT--TATCT--CTC-----TTTTGTTC---TTT-GTCTT
gi|79684 : AAAGAGAAA--ATT-CAT---ATTTCT-ATCTT---GA--ATTTG-TGACA------G-AAT--TATCTC-CCC-----TTTTTTAT---TTC-AATT
gi|79685 : AAAGGGAAA-TAAT-TAT---AACCCTCGTCTT---AA--ATA-A-TGGCA------G-AAT--TGTCTC-CTC-----TTTTGTAC---CTT-ATTT
gi|79686 : AAAGGGAAA-TAAT-TAT---AACCCTCGTCTT---AA--ATA-A-TGGCA------G-AAT--TGTCTC-CTC-----TTTTGTAC---CTT-ATTT
gi|79687 : GAAA-GAAC-CAG---AACTCT--TTTT---GA--ATA------CA------G-AAT--TATCTC-CAC-----TTTTGTAT---TTT-ATTTT
gi|79688 : aaaatAGAGCGAAATGAAC--AT---AACCCTTATCTT---GA--ATA-A-TGGCA------T-AAT--TATCTT-CCA-----TTTT
gi|79689 : AGAGCAAAA-GAAC-CAT---AAATCC-ATGTTTATAA--AAA-A-TGACA------G-AGT--TATCCC-CCT-----TTTTGTAC---TTT-ATTTT
gi|79690 : T-GTCTT---GA--ATA-AATGACA------G-AAT--TGTCTC-CCA-----TTTTGTAC---TTT-AGTTT
gi|79691 : agatggaggatacatAGAGTGACA-CAAC-CAT------------------GA--GTA-A-TGACA------C-AAT--TATCTC-CCC-----TTTTG-GT---TTT-ATT
gi|79692 : agagtggaagtgcAGTGAAA-GGTT-CAT---AACTCT-CTCTT---GA--ATA-A-TGACATACACTGTAAT--TATCTC-CCT-----TTTTCTAC---TTT-ATTTT
gi|79693 : A-AAAC-TATCAGAACTCT-TTTTT---GA--ATA-A-TGACA------C-AAT--TAGCTC-CAC-----TTTTTTAC---TTA-ATTTT
gi|79694 : tgACTTT-ATCTT---GA--ATA-A-TGACG------G-AAT--TATCTA-CTC-----TTTTGTACAAGTTT-AT
gi|79695 : gaacaatttatgttC-CAT---GACTTT-ATCTT---GA--ATA-A-TGACA------G-AAT--TATCTC-CCCT----TTTTATAC---TTT-ATTTT
gi|79696 : aaaggtgAAA-GAAC-AAC---AACTCT-ATCTG---AA--ATA-A-TGACA------G-AAT--TATCTC-CCC-----TTTTGTAC---TTTAATTTT
gi|79697 : T---AACTCT-ATCTT---GA--ATA-A-TGAC---------AAT--TATCTT-CCC-----TTTTTTAC---TTA-ATTTT
gi|79698 : aaacattatT---AACTCT-ATCTT---GA--ATA-A-TGAC---------AAT--TATCTT-CCC-----TTTTTTAC---TTA-ATTTT
gi|79699 : aaacattatT---AACTCTTATCTT---GA--ATA-A-TGACA------A-AAC--TATCTC-CCA-----TTTTGTAC---CTT-ATTT
gi|79700 : attttC-CAT---AACTCT-ATCTT---GA--ATA-A-TGACA------T-AATAATATC-C-CCC-----TTTTATGC---CTTAATTTT
gi|79701 : t-CAT---AACTCT-GTTAT---GA--ATA-A-TGACA------T-TAT--TATCTT-TCT-----TTTTATAC---TTC-ATTTT
gi|79702 : -CAT---AATTTT-ATATT---GA--ATA-A-TGACA------T-AGT--TATATC-CCC-----TTAAATAC---CTT-ATTTT
gi|79703 : -CAG---AACTTT-GTCTT---AA--ATA-A-TGACA------G-AAT--TATCTC-ACA------TTTGTAC---TTT-ATTTT
gi|79704 : CTCT-ATCTT---GG--AGA-A-TGACA------T-AAT--TATCTCACCC-----TTTTGTAC---CTT-ATTT
gi|79705 : CC-ATTTT---AA--ATA-A-TGACA------T-AAT--TGTCTC-CCC-----TTTTGTAC---CTT-ATTTT
gi|79706 : T-ATTTT---TA--ATA-A-TGACA------G-AAT--TATCTC-CCC-----TTCTGTAC---TTT-ATTTT
gi|79707 : T---GA--ATA-A-TGACA------T-AAT--TATCTC-CCA-----TTTTGTTC---TTC-ATTTT