lowQualScore : 22222222 1
lowQualScore : 5 77777777 1 1 3 1 1 555 1 2222 88888888888888888 3 1 11 1 444444 1 1 1 111 1 1 9 22 3 33 2 6
lowQualScore : . ........ . . . . . ... . .... ................. . . .. . ...... . . . ... . . . .. . .. . .
lowQualScore : 4 55555555 1 1 2 1 1 555 0 1111 55555555555555555 0 0 33 0 666666 0 0 9 777 0 0 0 99 0 00 4 1
consensus : TACGTAATAAAG----CC--G-G-G-G-TAA-GATAAAC-N-TTTG-CTTT----A-----------------TCGGCA-G--GG-AAG-----G-TTT-A-TCT---TGCAGCA-ACACA-CAAA--TTGAT--GACGTCATTGTTTTT
Reference ( gi|114222 ) : TACATGATAAAG----AT--G-G-G-G-TAA-GATAAAC-T-TTTG-CTTT----A-----------------TCAGCA-G--GG-AAG-----G-TTT-A-TCT---TGCAGCA-ACACA-CAGA--TGGAT--GACATCATTGTCTTT
gi|114223 : TGCATCATAAAG----CG--C-A-A-G-TAA-CATAAAC-T-TTGG-CTTT----A-----------------TCAGCA-G--GG-AAC-----G-TTT-A-TCT---TGCAGCA-ATACA-CAAA--TTGAT--GACTTCATTGTTTTT
gi|114226 : TGCATGATAAAG-----T--G-G-GAG-TAA-GATAAAC-T-TTAG-CTTT----AGCT--------------TTAGCG-GCAGG-AAATGTTTG-TTT-A-TCT---GGCAGCA-ACACA-CAAA--TTGAT--GACATCATTGTTTTT
gi|114224 : TACATTATAAAG-----C--G-T-G-G-AAATGTTAAAC-T-TTTG-CTTT----A-----------------TCGACA-G--GG-ATT-----G-TTT-A-TCT---TGCAGCA-GCACA-CAAG--TTGAT--GACATCATTGTTTTT
gi|114225 : TACAAAATAAAG-----C--G-C-G-A-TAA-GA-AAAC-T-TTTG-CTTT----ATCAGCAGGAACGATTTATCAGCA-G--GG-AAG-----G-TTT-A-TCT---TGCAGCA-ACACA-CAAA--TTGAG--GACATCATTGTTTTT
gi|114236 : TACATAATAAAG-----T--G-G-G-G-TAA-GATTACC-T-TTTT-CTTT----G-----------------TTTGCA-G--GG-AAG-------TTT-A-TCT---TGCAGCA-TCATG-CAAA--TTGAT--GACGTCATTGTTTT
gi|114227 : TACGTAATTAAG-----C--A-G-G-G-TAA-GATAAAC-G-TTTA-CTTT----A-----------------TCGGCA-G--GG-AAG-----G-TTT-A-TCT---TACAGCA-AGACA-CAAA--TTGAT--GACTTTAT
gi|114229 : TACGTAATTAAG-----C--G-G-G-G-CAA-GACAAAC-G-TTTA-TTTT----A-----------------TCGGCA-G--GG-AAG-----G-TTT-A-TCT---TACAGCA-AGACA-CAAA--TTGAT--GACATTAT
gi|114231 : TACGTAATAAGG----A---G-G-G-G-TAA-AATAAAC-G-TTTA-CTTT----------------------TCGGCA-G--GG-AAT-----G-TTT-A-TCT---TACAGCA-AGACA-CAAA--TTGAT--GACATTAT
gi|114232 : TACGTGATAAAG-----C--G-G-G-G-TAA-GAAAAAC-G-TTTA-ATTT----A-----------------TCGGCA-G--GG-AAG-----G-TTA-A-TTT---TACAGCA-AGACA-CAAA--TTGAT--GACATTAT
gi|114228 : TACGTAATTAAG-----C--G-G-G-G-CAA-GACAAAC-G-TTTG-TTTT----A-----------------TCGGCA-G--GG-AAG-----G-TTT-A-TCT---TACATCA-AGACA-CAAA--TTGAT--GACATTAT
gi|114230 : TATGTAATAAAG-----C--A-G-G-G-TAA-GATAAAC-G-TTTG-CTTT----A-----------------TCAGCA-G--GG-AAT-----G-TTT-C-TCT---TATACCA-ACAAA-CAAA--TTGAT--GACATTATgttt
gi|114237 : TACGCAATAAAG-----C--G-G-G-G-AAA-GATAAAC-G-TTCG-CTTT----A-----------------TCAACA-G--GG-AAA-----T-TTT-G-CCA---GGCAGCA-ACACA-AACA--TTGAT--GACGTTATTATTTT
gi|114238 : TACA--ATATAA----ATCGG-A-G-G-CCA-GATAAAC-T-TTTG--TTT----A-----------------TCGGCA-A--GG-AAT-----G-TTT-A-TTT---TGAAGCA-ACATA-CAAA--CTGAT--GACGTCGTTATT
gi|114239 : TACATAATAAAGCGGGAT--G-G-G-G-TAA----AGAC-T-TT-----------A-----------------TCGACA-A--GG-AAA-----G-TTC-A-TTT---TGCAGCA-ACACA-CACA--TTGAT--AATGTAATTGT
gi|114234 : TACGTAATAAAG----CC--G-G-G---TAG-GACAAACGT-TTTT-TTTT----A-----------------TCGGCA-G--GA-AAT-----G-TTT-A-TCT---AACACGA-AGACA-CAAA--TTGAT--GACATTATtgtt
gi|114240 : TACACAATAAAG----AG--A-T-G-G-TAA-GATAAAC-T-TT-----------A-----------------TCGACA-G--TG-ACG-----G-TTTTA-TCG---CGCAGCA-ACACA-AAAA--ATGAT--GACGCCATAGTTTTT
gi|114235 : TACATAA-AAAG----GC--G-G-G-G-TAA-AATAAAC-G-TTTAATTTT----T-----------------TCGGAA-G--GG-AAT-----G-TTT-A-TCT---TACAGCA-A---A-CAAA--T-GAT--GAC
gi|114242 : TACATAATAAAA----CT--T-C-G-T-TAA-GATAAAC-G-TTTG--------------------------------------------------TTT-A-TCT---TGCTGCA-ACACA-CAAA--TTGAT--GACGTCATTGTCTTT
gi|114241 : TACATAATAA-G----TC--G-G-GTG-TGA-ACTTAAT-G-TTTG-TTTT----A-----------------TCGGAA-G--GGGAAG-----G-TTT-T-TCT---TGCAGCA-ACATA-AGAA--TTGAC--GAAAT
gi|114247 : ACATAATAAAG----CG--G-G-T-G-TAA-GATAAAC-T-TTTG-CTTT----A-----------------TCAGCA-G--GG-AAG-----G-TTT-A-TCT---TGCAGCA-ACACA-
gi|114246 : ACATAATAAAG----CG--A-G-G-G-TAA-TATAAAC-T-TTTG-CTTT----A-----------------TCGGCA-G--GG-AAG-----G-TTT-A-TCT---TTCAGCA-ACGCA-TAAA--GTGAT--GATGTCATTATTaaa
gi|114250 : ACATGATAAAG----CT--C-G-G-G-TCA-GAGAACCGTATTTG-CTTC----G-----------------TCAACA-G--GA-AAG-----G-TTT-A-TCT---TGCAGCA-ACACA-CAAA--TTGAT--GACGTCAT
gi|114251 : ACATGATAAAA----CT--G-G-G-G-TAA-GATAAAT-T-TTTG-CTTT----A-----------------TCGACA-A--GG-AAC-----G-TTT-A-TCT---TGTAGCA-ACACA-TAAA--agatttt
gi|114248 : ATATAATAAAA----CG--G-G-G-G-TAA-GCTAAAC-G-TTTG-CTTT----A-----------------TCGGCAGG--GG-GAT-----G-TTT-A-ACTCAGTGCAGCA-ACACA-CAAA--CTGAT--GACGTCATTGTT
gi|114249 : ACATAACAAAG----CG--G-G-G-G-TAA-GATAAAT-T-TTTG-CTTC----A-----------------TTGACA-G--GC-AAG-----A-GTT-A-TCT---TGCAGCA-AAACA-CAAT--TTGAT--GACGT
gi|114253 : ACGTAATAAAG----CG--G-G-G-A-TAT-GATAAAC-T-TTTG-CTGT----A-----------------TCGAAA-G--GG-AAG-----A-TTT-A-TTT---TGCAG----CGTA-TAAA--CGGAA--GACTCCATTATATTT
gi|114252 : ACATTATAAAG-----C--A-G-G-G-TAA-GATAAAC-T-TTTG-CTTT---------------------------------------------CTT-A-TCT---TGCAGTA-ACACT-AAAA--TTGAT--GACGTCATTATTTTT
gi|114254 : ATAATAAA-----AT--G-G-G-GGCAA-GATAAAC-T-TTTG-CATT----A-----------------TCAACA-G--GG-AAG-----G-TTT-A-TCT---TGCAGCA-ACACA-CAAA--CTGAT--GATGTCATTGTTTTT
gi|114255 : ATAATAAAG----CG--A-G-G-A-TAA-GATAA-C-T-TTTG-CTTT----A-----------------TCGGCA-G--AG-AAG-----G-TTT-A-TCT---TGCATCA-ACATA-CAAC--TTGGT--GACGTCATTGTTTTT
gi|114256 : ATTATAAA-----AC--GAG-G-G-TAA-TATAAAT-G-TTTG-ATTT----A-----------------TCGACA-G--GG-AAG-----G-TTT-A-TC
gi|114257 : TAATAAAG-----T--G-G-GTG-TAA-TATAGAC-T-TTA----------A-----------------TCGGTA-G--GG-AAG-----GTTTT-A-TCT-------------------AA--TCGAT--GACGTCATTGTGTT
gi|114233 : ATAAAG----CC--G-G-G---TAA-AATCAAC-G-TTTG-TTTT----A-----------------TCGGCA-G--GG-AAT-----G-TTT-A-TCT---TACAGCA-AGACA-CAAA--TTGAT--TACATTAT
gi|114258 : tacgaaATAAA-----AC--G-GTG-A-TAA-GATAAAT-G-TTTG-CTTTTAATA-----------------TCGGCA-A--GG-ACT-----G-TTT-A-TCT---TGCTGTATACACA-CAAA--TTTAT--GACGTCATTTTTTT
gi|114259 : AAAG----TT--G-G-A-T-TAA-GATTAAC-G-TTTG-TTTT----A-----------------TCTGCA-G--GG-AAG-----G-TTT-A-CCT---TGCAGCA-ACACA-CAAA--TGGAT--GACGCTCTTGTTTTT
gi|114245 : --G-G-G-G-TAA-GAAAGGG-A-TATG-TTTT----A-----------------TCGGCA-C--AA-AAT-----G-TTT-A-TCT---TGCAGCA-
gi|114261 : tgcaaaattaggcgg-G-G-G-TAA-GATAAAC-G-TTTG-ATTT----A-----------------ACGGT--T--GC-AAG-----T-GTC-ATTCT---TACAGCA-ACACA-TA-ACTTGCATAAGACCTCATTGTTTTTtaatgacttcattcgtttt
gi|114260 : gcaa-G-G-G-TAA-GATAAAC-G-TTTG-ATTT----A-----------------ACGGT--T--GC-AAG-----T-GTC-ATTCT---TACAGCA-ACACA-TA-ACTTGCATAAGACCTCATTGTTTTT
gi|114262 : gcaa-G-G-TAA-GATAATC-T-TCTG-CTCA----A-----------------TCAGCA-G--GG-AAT-----G-TTT-T-TCA---GGCAGTA-ACA
gi|114263 : TAAAC-T-TTTG-CTTT----A-----------------TCAACA-G--GG-AAT-----G-TTT-A-TCT---GACAGCA-ACACATTAAA--TTGAT--GACGTCACTGTTTTaaaacactgataa
gi|114264 : AAAC-G-TTTT-CTTT----A-----------------TCAACA-A--GG-AAT-----G-TTT-A-TCT---TTCAGCA-ACATA-CACA--TTGGT--GACGCCATTGTTTTT
gi|114265 : TG-CTTT----------------------TCGGCA-G--GG-AAA-----G-TTT-A-TCA---GACAG---ACACA-C--A--TTGAT--GACGTCATTGTTTT
gi|114243 : CA-G--GG-A---------TTT---TTT---TGCAACA-ACACA-CACA--TTAAT--GGCATCATTGTT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|114244 ): TACATAACAAATCGGGGGATAAGAGAAATTTTCACTTAATCGGCAAGGAATGCTCATTTTGCAATATTTACATGTAAAATGATGAGGTCGCCATTT
Alignments
lowQualScore : 1
lowQualScore : 0 9 1 1 1 33 11 22222 0 0 2222 66666666666666666 0 0 44444 0 0 1 111 222 0 2 22 1
lowQualScore : . . . . . .. .. ..... . . .... ................. . . ..... . . . ... ... . . .. .
lowQualScore : 3 3 0 0 0 88 33 33333 9 9 0000 55555555555555555 9 9 44444 9 9 8 666 666 9 0 77 3
consensus : TACGTAATAAAGCGGGG-G-TAA-GATAAAC-GT--T-----T-G-CTTT----AT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAATTG-AT--GACGTCATT-GTTTTT
Reference ( family-506 ) : TACGTAATAAAGCCGGG-G-TAA-GATAAAC-NT--T-----T-G-CTTT----AT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAATTG-AT--GACGTCATT-GTTTTT
gi|114222 : TACATGATAAAGATGGG-G-TAA-GATAAAC-TT--T-----T-G-CTTT----AT-----------------CAGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAGATGG-AT--GACATCATT-GTCTTT
gi|114223 : TGCATCATAAAGCGCAA-G-TAA-CATAAAC-TT--T-----G-G-CTTT----AT-----------------CAGCA-GGG-AA-C---G-TTT-A-TCT---TGCAGCA---ATACA-CAAATTG-AT--GACTTCATT-GTTTTT
gi|114224 : TACATTATAAAGC-GTG-G-AAATGTTAAAC-TT--T-----T-G-CTTT----AT-----------------CGACA-GGG-AT-T---G-TTT-A-TCT---TGCAGCA---GCACA-CAAGTTG-AT--GACATCATT-GTTTTT
gi|114225 : TACAAAATAAAGC-GCG-A-TAA-GA-AAAC-TT--T-----T-G-CTTT----ATCAGCAGGAACGATTTATCAGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAATTG-AG--GACATCATT-GTTTTT
gi|114226 : TGCATGATAAAGTGGGA-G-TAA-GATAAAC-TT--TAGCTTTAG-CTTT----AG-----------------CGGCA-GGA-AATGTTTG-TTT-A-TCT---GGCAGCA---ACACA-CAAATTG-AT--GACATCATT-GTTTTT
gi|114227 : TACGTAATTAAGC-AGG-G-TAA-GATAAAC-GT--T-----T-A-CTTT----AT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TACAGCA---AGACA-CAAATTG-AT--GACTTTAT
gi|114228 : TACGTAATTAAGC-GGG-G-CAA-GACAAAC-GT--T-----T-G-TTTT----AT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TACATCA---AGACA-CAAATTG-AT--GACATTA-T-GTTT
gi|114229 : TACGTAATTAAGC-GGG-G-CAA-GACAAAC-GT--T-----T-A-TTTT----AT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TACAGCA---AGACA-CAAATTG-AT--GACATTAT
gi|114230 : TATGTAATAAAGC-AGG-G-TAA-GATAAAC-GT--T-----T-G-CTTT----AT-----------------CAGCA-GGG-AA-T---G-TTT-C-TCT---TATACCA---ACAAA-CAAATTG-AT--GACATTAT
gi|114231 : TACGTAATAAGGA-GGG-G-TAA-AATAAAC-GT--T-----T-A-CTTT-----T-----------------CGGCA-GGG-AA-T---G-TTT-A-TCT---TACAGCA---AGACA-CAAATTG-AT--GACATTAT
gi|114232 : TACGTGATAAAGC-GGG-G-TAA-GAAAAAC-GT--T-----T-A-ATTT----AT-----------------CGGCA-GGG-AA-G---G-TTA-A-TTT---TACAGCA---AGACA-CAAATTG-AT--GACATTAT
gi|114233 : TACGAAATAAAGCCGGG---TAA-AATCAAC-GT--T-----T-G-TTTT----AT-----------------CGGCA-GGG-AA-T---G-TTT-A-TCT---TACAGCA---AGACA-CAAATTG-AT--TACATTAT
gi|114234 : TACGTAATAAAGCC-GG-G-TAG-GACAAACGTT--T-----T-T-TTTT----AT-----------------CGGCA-GGA-AA-T---G-TTT-A-TCT---AACACGA---AGACA-CAAATTG-AT--GACATTAT
gi|114235 : TACATAA-AAAGGCGGG-G-TAA-AATAAAC-GT--T-----T-AATTTT----TT-----------------CGGAA-GGG-AA-T---G-TTT-A-TCT---TACAGCA---A---A-CAAA-TG-AT--GAC
gi|114236 : TACATAATAAAGT-GGG-G-TAA-GATTACC-TT--T-----T-T-CTTT----GT-----------------TTGCA-GGG-AA-G-----TTT-A-TCT---TGCAGCA---TCATG-CAAATTG-AT--GACGTCATT-GTTTT
gi|114237 : TACGCAATAAAGC-GGG-G-AAA-GATAAAC-GT--T-----C-G-CTTT----AT-----------------CAACA-GGG-AA-A---T-TTT-G-CCA---GGCAGCA---ACACA-AACATTG-AT--GACGTTATT-ATTTT
gi|114238 : ATAAATCGGAG-G-CCA-GATAAAC-TT--T-----T-G--TTT----AT-----------------CGGCA-AGG-AA-T---G-TTT-A-TTT---TGAAGCA---ACATA-CAAACTG-AT--GACGTCGTT-ATTT
gi|114239 : tacaatTACATAATAAAGC-GGG-A-TGG-GGTAAAG-A-------------CTTT----AT-----------------CGACA-AGG-AA-A---G-TTC-A-TTT---TGCAGCA---ACACA-CACATTG-AT--AATGTAATT-GTTGTT
gi|114240 : TACACAATAAAGAGATG-G-TAA-GATAAAC----------------TTT----AT-----------------CGACA-GTG-AC-G---G-TTTTA-TCG---CGCAGCA---ACACA-AAAAATG-AT--GACGCCATA-GTTTTT
gi|114241 : TACATAATAA-GTCGGGTG-TGA-ACTTAAT-GT--T-----T-G-TTTT----AT-----------------CGGAA-GGGGAA-G---G-TTT-T-TCT---TGCAGCA---ACATA-AGAATTG-AC--GA
gi|114242 : TACATAATAAAACTTCG-T-TAA-GATAAAC-GT--T-----T-G-----------------------------------------------TTT-A-TCT---TGCTGCA---ACACA-CAAATTG-AT--GACGTCATT-GTCTTTaat
gi|114243 : GACA-GGG-A--------TTT---TTT---TGCAACA---ACACA-CACATTA-AT--GGCATCATT-GTTT
gi|114244 : tacataacaaagcaagagtgaTACATAACAAATCGGGG-GATAA-GAGAAAT-TT--T-----C-A-CTTA----AT-----------------CGGCA-AGG-AA-T---G-CTC-A-TTT---TGCAATATTTACATG-TAAAATG-AT--GAGGTCGCC-ATTT
gi|114245 : GGG-G-TAA-GAAAGGG-AT--A-----T-G-TTTT----AT-----------------CGGCA-CAA-AA-T---G-TTT-A-TCT---TGCAGCA--------------TA-AT--GACTTCATTCGTTTT
gi|114246 : tgcaaaattaggcggACATAATAAAGCGAGG-G-TAA-TATAAAC-TT--T-----T-G-CTTT----AT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TTCAGCA---ACGCA-TAAAGTG-AT--GATGTCATT-ATTT
gi|114247 : ACATAATAAAGCGGGT-G-TAA-GATAAAC-TT--T-----T-G-CTTT----AT-----------------CAGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-AAA
gi|114248 : TAATAAAACGGGG-G-TAA-GCTAAAC-GT--T-----T-G-CTTT----AT-----------------CGGCAGGGG-GA-T---G-TTT-A-ACTCAGTGCAGCA---ACACA-CAAACTG-AT--GACGTCATT-GTTT
gi|114249 : ataACATAACAAAGCGGGG-G-TAA-GATAAAT-TT--T-----T-G-CTTC----AT-----------------TGACA-GGC-AA-G---A-GTT-A-TCT---TGCAGCA---AAACA-CAATTTG-AT--GACGT
gi|114250 : ACATGATAAAGCTCGG-G-TCA-GAGAACC-GTATT-----T-G-CTTC----GT-----------------CAACA-GGA-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAATTG-AT--GACGTCATA-GATTTT
gi|114251 : ACATGATAAAACTGGG-G-TAA-GATAAAT-TT--T-----T-G-CTTT----AT-----------------CGACA-AGG-AA-C---G-TTT-A-TCT---TGTAGCA---ACACA-TAAA
gi|114252 : ACATTATAAAGC-AGG-G-TAA-GATAAAC-TT--T-----T-G-CTTT------------------------------------------CTT-A-TCT---TGCAGTA---ACACT-AAAATTG-AT--GACGTCATT-ATTTTT
gi|114253 : ACGTAATAAAGCGGGG-A-TAT-GATAAAC-TT--T-----T-G-CTGT----AT-----------------CGAAA-GGG-AA-G---A-TTT-A-TTT---TGCAG------CGTA-TAAACGG-AA--GACTCCATT-ATATTT
gi|114254 : TAATAAAATGGGG-G-CAA-GATAAAC-TT--T-----T-G-CATT----AT-----------------CAACA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAACTG-AT--GATGTCATT-GTTTTT
gi|114255 : aTAATAAAGCGAGG-A-TAA-GATAA-C-TT--T-----T-G-CTTT----AT-----------------CGGCA-GAG-AA-G---G-TTT-A-TCT---TGCATCA---ACATA-CAACTTG-GT--GACGTCATT-GTTTTT
gi|114256 : aATAAAACGAGG-G-TAA-TATAAAT-GT--T-----T-G-ATTT----AT-----------------CGACA-GGG-AA-G---G-TTT-A-TC
gi|114257 : attTAATAAAGTGGGT-G-TAA-TATAGAC--T--T-----T-A---------AT-----------------CGGTA-GGG-AA-G---GTTTT-A-TCT---------------------AATCG-AT--GACGTCATT-GTGTT
gi|114258 : ATAAAACGGTG-A-TAA-GATAAAT-GT--T-----T-G-CTTTTAATAT-----------------CGGCA-AGG-AC-T---G-TTT-A-TCT---TGCTGTAT--ACACA-CAAATTT-AT--GACGTCATT-TTTTT
gi|114259 : AAAGTTGGA-T-TAA-GATTAAC-GT--T-----T-G-TTTT----AT-----------------CTGCA-GGG-AA-G---G-TTT-A-CCT---TGCAGCA---ACACA-CAAATGG-AT--GACGCTCTT-GTTTTT
gi|114260 : GG-G-TAA-GATAAAC-GT--T-----T-G-ATTT----AA-----------------CGGT--TGC-AA-G---T-GTC-ATTCT---TACAGCA---ACACA-TAACTTGCATAAGACCTCATT-GTTTTT
gi|114261 : gcaaGG-G-TAA-GATAAAC-GT--T-----T-G-ATTT----AA-----------------CGGT--TGC-AA-G---T-GTC-ATTCT---TACAGCA---ACACA-TAACTTGCATAAGACCTCATT-GTTTTT
gi|114262 : gcaaG-G-TAA-GATAATC-TT--C-----T-G-CTCA----AT-----------------CAGCA-GGG-AA-T---G-TTT-T-TCA---GGCAGTA---ACAAA-AACACTG-AT--AA
gi|114263 : TAAAC-TT--T-----T-G-CTTT----AT-----------------CAACA-GGG-AA-T---G-TTT-A-TCT---GACAGCA---ACACATTAAATTG-AT--GACGTCACT-GTTTT
gi|114264 : AAAC-GT--T-----T-T-CTTT----AT-----------------CAACA-AGG-AA-T---G-TTT-A-TCT---TTCAGCA---ACATA-CACATTG-GT--GACGCCATT-GTTTTT
gi|114265 : -----T-G-CTTT-----T-----------------CGGCA-GGG-AA-A---G-TTT-A-TCA---GACAG-----ACACA-CA--TTG-AT--GACGTCATT-GTTTT
Alignments
lowQualScore : 0 88 666666 11 11 0 1111 66666666666666666 0 0 44444 0 0 1 111 222 0 2 22 1
lowQualScore : . .. ...... .. .. . .... ................. . . ..... . . . ... ... . . .. .
lowQualScore : 5 55 111111 33 22 9 9999 44444444444444444 9 9 44444 9 9 8 666 666 9 0 77 3
consensus : TACGTAATAAAGCGGGGG-TAAGATAAAC----G-T--TT--G-CTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAATTG-AT--GACGTCATT-GTTTTT
Reference ( family-506 ) : TACGTAATAAAGCGGGGG-TAAGATAAAC----G-T--TT--G-CTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAATTG-AT--GACGTCATT-GTTTTT
gi|114222 : TACATGATAAAGATGGGG-TAAGATAAAC----T-T--TT--G-CTT----TAT-----------------CAGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAGATGG-AT--GACATCATT-GTCTTT
gi|114223 : TGCATCATAAAGCGCAAG-TAACATAAAC----T-T--TG--G-CTT----TAT-----------------CAGCA-GGG-AA-C---G-TTT-A-TCT---TGCAGCA---ATACA-CAAATTG-AT--GACTTCATT-GTTTTT
gi|114224 : TACATTATAAAGCGTGGA-AATGTTAAAC----T-T--TT--G-CTT----TAT-----------------CGACA-GGG-AT-T---G-TTT-A-TCT---TGCAGCA---GCACA-CAAGTTG-AT--GACATCATT-GTTTTT
gi|114225 : TACAAAATAAAGCGCGA--TAAGA-AAAC----T-T--TT--G-CTT----TATCAGCAGGAACGATTTATCAGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAATTG-AG--GACATCATT-GTTTTT
gi|114226 : TGCATGATAAAGTGGGAG-TAAGATAAACTTTAG-C--TTTAG-CTT----TAG-----------------CGGCA-GGA-AATGTTTG-TTT-A-TCT---GGCAGCA---ACACA-CAAATTG-AT--GACATCATT-GTTTTT
gi|114227 : TACGTAATTAAGCAGGG--TAAGATAAAC----G-T--TT--A-CTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TACAGCA---AGACA-CAAATTG-AT--GACTTTAT
gi|114228 : TACGTAATTAAGCGGGG--CAAGACAAAC----G-T--TT--G-TTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TACATCA---AGACA-CAAATTG-AT--GACATTA-T-GTTT
gi|114229 : TACGTAATTAAGCGGGG--CAAGACAAAC----G-T--TT--A-TTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TACAGCA---AGACA-CAAATTG-AT--GACATTAT
gi|114230 : TATGTAATAAAGCAGGG--TAAGATAAAC----G-T--TT--G-CTT----TAT-----------------CAGCA-GGG-AA-T---G-TTT-C-TCT---TATACCA---ACAAA-CAAATTG-AT--GACATTAT
gi|114231 : TACGTAATAAGG-AGGGG-TAAAATAAAC----G-T--TT--A-CTT----T-T-----------------CGGCA-GGG-AA-T---G-TTT-A-TCT---TACAGCA---AGACA-CAAATTG-AT--GACATTAT
gi|114232 : TACGTGATAAAGCGGGG--TAAGAAAAAC----G-T--TT--A-ATT----TAT-----------------CGGCA-GGG-AA-G---G-TTA-A-TTT---TACAGCA---AGACA-CAAATTG-AT--GACATTAT
gi|114233 : TACGAAATAAAGCCGGG--TAAAATCAAC----G-T--TT--G-TTT----TAT-----------------CGGCA-GGG-AA-T---G-TTT-A-TCT---TACAGCA---AGACA-CAAATTG-AT--TACATTAT
gi|114234 : TACGTAATAAAGC-CGGG-TAGGACAAAC----GTT--TT--T-TTT----TAT-----------------CGGCA-GGA-AA-T---G-TTT-A-TCT---AACACGA---AGACA-CAAATTG-AT--GACATTAT
gi|114235 : TACATAAAAAGGCGGGG--TAAAATAAAC----G-T--TT--AATTT----TTT-----------------CGGAA-GGG-AA-T---G-TTT-A-TCT---TACAGCA---A---A-CAAA-TG-AT--GAC
gi|114236 : TACATAATAAAGTGGGG--TAAGATTACC----T-T--TT--T-CTT----TGT-----------------TTGCA-GGG-AA-G-----TTT-A-TCT---TGCAGCA---TCATG-CAAATTG-AT--GACGTCATT-GTTTT
gi|114237 : TACGCAATAAAGCGGGGA--AAGATAAAC----G-T--TC--G-CTT----TAT-----------------CAACA-GGG-AA-A---T-TTT-G-CCA---GGCAGCA---ACACA-AACATTG-AT--GACGTTATT-ATTTT
gi|114238 : ATAAATCGGAGG-CCAGATAAAC----T-T--TT--G--TT----TAT-----------------CGGCA-AGG-AA-T---G-TTT-A-TTT---TGAAGCA---ACATA-CAAACTG-AT--GACGTCGTT-ATTT
gi|114239 : tacaatTACATAATAAAGCGGGA--TGGGGTAAA-----G--------A-CTT----TAT-----------------CGACA-AGG-AA-A---G-TTC-A-TTT---TGCAGCA---ACACA-CACATTG-AT--AATGTAATT-GTTGTT
gi|114240 : TACACAATAAAGAGATGG-TAAGATAAAC----------------TT----TAT-----------------CGACA-GTG-AC-G---G-TTTTA-TCG---CGCAGCA---ACACA-AAAAATG-AT--GACGCCATA-GTTTTT
gi|114241 : TACATAATAAGTCGGGTG-TGAACTTAAT----G-T--TT--G-TTT----TAT-----------------CGGAA-GGGGAA-G---G-TTT-T-TCT---TGCAGCA---ACATA-AGAATTG-AC--GA
gi|114242 : TACATAATAAAACTTCGT-TAAGATAAAC----G-T--TT--G-----------------------------------------------TTT-A-TCT---TGCTGCA---ACACA-CAAATTG-AT--GACGTCATT-GTCTTTaat
gi|114243 : TACATAACAAAGCAAGAG-TGAGA--------------------------------------------------CA-GGG-A--------TTT---TTT---TGCAACA---ACACA-CACATTA-AT--GGCATCATT-GTTT
gi|114244 : TACATAACAAATCGGGGGATAAGAGAAAT----T-T--TC--A-CTT----AAT-----------------CGGCA-AGG-AA-T---G-CTC-A-TTT---TGCAATATTTACATG-TAAAATG-AT--GAGGTCGCC-ATTT
gi|114245 : AATTAGGCGGGGGGTAAGAAAGGG----A-T--AT--G-TTT----TAT-----------------CGGCA-CAA-AA-T---G-TTT-A-TCT---TGCAGCA--------------TA-AT--GACTTCATTCGTTTT
gi|114246 : tgcaaACATAATAAAGCGAGGG-TAATATAAAC----T-T--TT--G-CTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TTCAGCA---ACGCA-TAAAGTG-AT--GATGTCATT-ATTT
gi|114247 : ACATAATAAAGCGGGTG-TAAGATAAAC----T-T--TT--G-CTT----TAT-----------------CAGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-AAA
gi|114248 : TAATAAAACGGGGG-TAAGCTAAAC----G-T--TT--G-CTT----TAT-----------------CGGCAGGGG-GA-T---G-TTT-A-ACTCAGTGCAGCA---ACACA-CAAACTG-AT--GACGTCATT-GTTT
gi|114249 : ataACATAACAAAGCGGGGG-TAAGATAAAT----T-T--TT--G-CTT----CAT-----------------TGACA-GGC-AA-G---A-GTT-A-TCT---TGCAGCA---AAACA-CAATTTG-AT--GACGT
gi|114250 : ACATGATAAAGCTCGGG-TCAGAGAACC----G-TATTT--G-CTT----CGT-----------------CAACA-GGA-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAATTG-AT--GACGTCATA-GATTTT
gi|114251 : ACATGATAAAACTGGGG-TAAGATAAAT----T-T--TT--G-CTT----TAT-----------------CGACA-AGG-AA-C---G-TTT-A-TCT---TGTAGCA---ACACA-TAAA
gi|114252 : ACATTATAAAGCAGGG--TAAGATAAAC----T-T--TT--G-CTT----T--------------------------------------CTT-A-TCT---TGCAGTA---ACACT-AAAATTG-AT--GACGTCATT-ATTTTT
gi|114253 : ACGTAATAAAGCGGGGA-TATGATAAAC----T-T--TT--G-CTG----TAT-----------------CGAAA-GGG-AA-G---A-TTT-A-TTT---TGCAG------CGTA-TAAACGG-AA--GACTCCATT-ATATTT
gi|114254 : TAATAAAATGGGGG-CAAGATAAAC----T-T--TT--G-CAT----TAT-----------------CAACA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAACTG-AT--GATGTCATT-GTTTTT
gi|114255 : aTAATAAAGCGAGGA-TAAGATAA-C----T-T--TT--G-CTT----TAT-----------------CGGCA-GAG-AA-G---G-TTT-A-TCT---TGCATCA---ACATA-CAACTTG-GT--GACGTCATT-GTTTTT
gi|114256 : aATAAAACGAGGG-TAATATAAAT----G-T--TT--G-ATT----TAT-----------------CGACA-GGG-AA-G---G-TTT-A-TC
gi|114257 : attTAATAAAGTGGGTG-TAATATAGAC------T--TT--A---------AT-----------------CGGTA-GGG-AA-G---GTTTT-A-TCT---------------------AATCG-AT--GACGTCATT-GTGTT
gi|114258 : ATAAAACGGTGA-TAAGATAAAT----G-T--TT--G-CTTTTAATAT-----------------CGGCA-AGG-AC-T---G-TTT-A-TCT---TGCTGTAT--ACACA-CAAATTT-AT--GACGTCATT-TTTTT
gi|114259 : AAAGTTGGAT-TAAGATTAAC----G-T--TT--G-TTT----TAT-----------------CTGCA-GGG-AA-G---G-TTT-A-CCT---TGCAGCA---ACACA-CAAATGG-AT--GACGCTCTT-GTTTTT
gi|114260 : GCAAGGG-TAAGATAAAC----G-T--TT--G-ATT----TAA-----------------CGGT--TGC-AA-G---T-GTC-ATTCT---TACAGCA---ACACA-TAACTTGCATAAGACCTCATT-GTTTTT
gi|114261 : GCAAGGG-TAAGATAAAC----G-T--TT--G-ATT----TAA-----------------CGGT--TGC-AA-G---T-GTC-ATTCT---TACAGCA---ACACA-TAACTTGCATAAGACCTCATT-GTTTTT
gi|114262 : GG-TAAGATAATC----T-T--CT--G-CTC----AAT-----------------CAGCA-GGG-AA-T---G-TTT-T-TCA---GGCAGTA---ACAAA-AACACTG-AT--AA
gi|114263 : TAAAC----T-T--TT--G-CTT----TAT-----------------CAACA-GGG-AA-T---G-TTT-A-TCT---GACAGCA---ACACATTAAATTG-AT--GACGTCACT-GTTTT
gi|114264 : AAAC----G-T--TT--T-CTT----TAT-----------------CAACA-AGG-AA-T---G-TTT-A-TCT---TTCAGCA---ACATA-CACATTG-GT--GACGCCATT-GTTTTT
gi|114265 : T--G-CTT----T-T-----------------CGGCA-GGG-AA-A---G-TTT-A-TCA---GACAG-----ACACA-CA--TTG-AT--GACGTCATT-GTTTT
Alignments
lowQualScore : 0 88 666666 11 11 0 1111 66666666666666666 0 0 44444 0 0 1 111 222 0 2 22 1
lowQualScore : . .. ...... .. .. . .... ................. . . ..... . . . ... ... . . .. .
lowQualScore : 5 55 111111 33 22 9 9999 44444444444444444 9 9 44444 9 9 8 666 666 9 0 77 3
consensus : TACGTAATAAAGCGGGGG-TAAGATAAAC----G-T--TT--G-CTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAATTG-AT--GACGTCATT-GTTTTT
Reference ( family-506 ) : TACGTAATAAAGCGGGGG-TAAGATAAAC----G-T--TT--G-CTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAATTG-AT--GACGTCATT-GTTTTT
gi|114222 : TACATGATAAAGATGGGG-TAAGATAAAC----T-T--TT--G-CTT----TAT-----------------CAGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAGATGG-AT--GACATCATT-GTCTTT
gi|114223 : TGCATCATAAAGCGCAAG-TAACATAAAC----T-T--TG--G-CTT----TAT-----------------CAGCA-GGG-AA-C---G-TTT-A-TCT---TGCAGCA---ATACA-CAAATTG-AT--GACTTCATT-GTTTTT
gi|114224 : TACATTATAAAGCGTGGA-AATGTTAAAC----T-T--TT--G-CTT----TAT-----------------CGACA-GGG-AT-T---G-TTT-A-TCT---TGCAGCA---GCACA-CAAGTTG-AT--GACATCATT-GTTTTT
gi|114225 : TACAAAATAAAGCGCGA--TAAGA-AAAC----T-T--TT--G-CTT----TATCAGCAGGAACGATTTATCAGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAATTG-AG--GACATCATT-GTTTTT
gi|114226 : TGCATGATAAAGTGGGAG-TAAGATAAACTTTAG-C--TTTAG-CTT----TAG-----------------CGGCA-GGA-AATGTTTG-TTT-A-TCT---GGCAGCA---ACACA-CAAATTG-AT--GACATCATT-GTTTTT
gi|114227 : TACGTAATTAAGCAGGG--TAAGATAAAC----G-T--TT--A-CTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TACAGCA---AGACA-CAAATTG-AT--GACTTTAT
gi|114228 : TACGTAATTAAGCGGGG--CAAGACAAAC----G-T--TT--G-TTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TACATCA---AGACA-CAAATTG-AT--GACATTA-T-GTTT
gi|114229 : TACGTAATTAAGCGGGG--CAAGACAAAC----G-T--TT--A-TTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TACAGCA---AGACA-CAAATTG-AT--GACATTAT
gi|114230 : TATGTAATAAAGCAGGG--TAAGATAAAC----G-T--TT--G-CTT----TAT-----------------CAGCA-GGG-AA-T---G-TTT-C-TCT---TATACCA---ACAAA-CAAATTG-AT--GACATTAT
gi|114231 : TACGTAATAAGG-AGGGG-TAAAATAAAC----G-T--TT--A-CTT----T-T-----------------CGGCA-GGG-AA-T---G-TTT-A-TCT---TACAGCA---AGACA-CAAATTG-AT--GACATTAT
gi|114232 : TACGTGATAAAGCGGGG--TAAGAAAAAC----G-T--TT--A-ATT----TAT-----------------CGGCA-GGG-AA-G---G-TTA-A-TTT---TACAGCA---AGACA-CAAATTG-AT--GACATTAT
gi|114233 : TACGAAATAAAGCCGGG--TAAAATCAAC----G-T--TT--G-TTT----TAT-----------------CGGCA-GGG-AA-T---G-TTT-A-TCT---TACAGCA---AGACA-CAAATTG-AT--TACATTAT
gi|114234 : TACGTAATAAAGC-CGGG-TAGGACAAAC----GTT--TT--T-TTT----TAT-----------------CGGCA-GGA-AA-T---G-TTT-A-TCT---AACACGA---AGACA-CAAATTG-AT--GACATTAT
gi|114235 : TACATAAAAAGGCGGGG--TAAAATAAAC----G-T--TT--AATTT----TTT-----------------CGGAA-GGG-AA-T---G-TTT-A-TCT---TACAGCA---A---A-CAAA-TG-AT--GAC
gi|114236 : TACATAATAAAGTGGGG--TAAGATTACC----T-T--TT--T-CTT----TGT-----------------TTGCA-GGG-AA-G-----TTT-A-TCT---TGCAGCA---TCATG-CAAATTG-AT--GACGTCATT-GTTTT
gi|114237 : TACGCAATAAAGCGGGGA--AAGATAAAC----G-T--TC--G-CTT----TAT-----------------CAACA-GGG-AA-A---T-TTT-G-CCA---GGCAGCA---ACACA-AACATTG-AT--GACGTTATT-ATTTT
gi|114238 : ATAAATCGGAGG-CCAGATAAAC----T-T--TT--G--TT----TAT-----------------CGGCA-AGG-AA-T---G-TTT-A-TTT---TGAAGCA---ACATA-CAAACTG-AT--GACGTCGTT-ATTT
gi|114239 : tacaatTACATAATAAAGCGGGA--TGGGGTAAA-----G--------A-CTT----TAT-----------------CGACA-AGG-AA-A---G-TTC-A-TTT---TGCAGCA---ACACA-CACATTG-AT--AATGTAATT-GTTGTT
gi|114240 : TACACAATAAAGAGATGG-TAAGATAAAC----------------TT----TAT-----------------CGACA-GTG-AC-G---G-TTTTA-TCG---CGCAGCA---ACACA-AAAAATG-AT--GACGCCATA-GTTTTT
gi|114241 : TACATAATAAGTCGGGTG-TGAACTTAAT----G-T--TT--G-TTT----TAT-----------------CGGAA-GGGGAA-G---G-TTT-T-TCT---TGCAGCA---ACATA-AGAATTG-AC--GA
gi|114242 : TACATAATAAAACTTCGT-TAAGATAAAC----G-T--TT--G-----------------------------------------------TTT-A-TCT---TGCTGCA---ACACA-CAAATTG-AT--GACGTCATT-GTCTTTaat
gi|114243 : TACATAACAAAGCAAGAG-TGAGA--------------------------------------------------CA-GGG-A--------TTT---TTT---TGCAACA---ACACA-CACATTA-AT--GGCATCATT-GTTT
gi|114244 : TACATAACAAATCGGGGGATAAGAGAAAT----T-T--TC--A-CTT----AAT-----------------CGGCA-AGG-AA-T---G-CTC-A-TTT---TGCAATATTTACATG-TAAAATG-AT--GAGGTCGCC-ATTT
gi|114245 : AATTAGGCGGGGGGTAAGAAAGGG----A-T--AT--G-TTT----TAT-----------------CGGCA-CAA-AA-T---G-TTT-A-TCT---TGCAGCA--------------TA-AT--GACTTCATTCGTTTT
gi|114246 : tgcaaACATAATAAAGCGAGGG-TAATATAAAC----T-T--TT--G-CTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TTCAGCA---ACGCA-TAAAGTG-AT--GATGTCATT-ATTT
gi|114247 : ACATAATAAAGCGGGTG-TAAGATAAAC----T-T--TT--G-CTT----TAT-----------------CAGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-AAA
gi|114248 : TAATAAAACGGGGG-TAAGCTAAAC----G-T--TT--G-CTT----TAT-----------------CGGCAGGGG-GA-T---G-TTT-A-ACTCAGTGCAGCA---ACACA-CAAACTG-AT--GACGTCATT-GTTT
gi|114249 : ataACATAACAAAGCGGGGG-TAAGATAAAT----T-T--TT--G-CTT----CAT-----------------TGACA-GGC-AA-G---A-GTT-A-TCT---TGCAGCA---AAACA-CAATTTG-AT--GACGT
gi|114250 : ACATGATAAAGCTCGGG-TCAGAGAACC----G-TATTT--G-CTT----CGT-----------------CAACA-GGA-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAATTG-AT--GACGTCATA-GATTTT
gi|114251 : ACATGATAAAACTGGGG-TAAGATAAAT----T-T--TT--G-CTT----TAT-----------------CGACA-AGG-AA-C---G-TTT-A-TCT---TGTAGCA---ACACA-TAAA
gi|114252 : ACATTATAAAGCAGGG--TAAGATAAAC----T-T--TT--G-CTT----T--------------------------------------CTT-A-TCT---TGCAGTA---ACACT-AAAATTG-AT--GACGTCATT-ATTTTT
gi|114253 : ACGTAATAAAGCGGGGA-TATGATAAAC----T-T--TT--G-CTG----TAT-----------------CGAAA-GGG-AA-G---A-TTT-A-TTT---TGCAG------CGTA-TAAACGG-AA--GACTCCATT-ATATTT
gi|114254 : TAATAAAATGGGGG-CAAGATAAAC----T-T--TT--G-CAT----TAT-----------------CAACA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAACTG-AT--GATGTCATT-GTTTTT
gi|114255 : aTAATAAAGCGAGGA-TAAGATAA-C----T-T--TT--G-CTT----TAT-----------------CGGCA-GAG-AA-G---G-TTT-A-TCT---TGCATCA---ACATA-CAACTTG-GT--GACGTCATT-GTTTTT
gi|114256 : aATAAAACGAGGG-TAATATAAAT----G-T--TT--G-ATT----TAT-----------------CGACA-GGG-AA-G---G-TTT-A-TC
gi|114257 : attTAATAAAGTGGGTG-TAATATAGAC------T--TT--A---------AT-----------------CGGTA-GGG-AA-G---GTTTT-A-TCT---------------------AATCG-AT--GACGTCATT-GTGTT
gi|114258 : ATAAAACGGTGA-TAAGATAAAT----G-T--TT--G-CTTTTAATAT-----------------CGGCA-AGG-AC-T---G-TTT-A-TCT---TGCTGTAT--ACACA-CAAATTT-AT--GACGTCATT-TTTTT
gi|114259 : AAAGTTGGAT-TAAGATTAAC----G-T--TT--G-TTT----TAT-----------------CTGCA-GGG-AA-G---G-TTT-A-CCT---TGCAGCA---ACACA-CAAATGG-AT--GACGCTCTT-GTTTTT
gi|114260 : GCAAGGG-TAAGATAAAC----G-T--TT--G-ATT----TAA-----------------CGGT--TGC-AA-G---T-GTC-ATTCT---TACAGCA---ACACA-TAACTTGCATAAGACCTCATT-GTTTTT
gi|114261 : GCAAGGG-TAAGATAAAC----G-T--TT--G-ATT----TAA-----------------CGGT--TGC-AA-G---T-GTC-ATTCT---TACAGCA---ACACA-TAACTTGCATAAGACCTCATT-GTTTTT
gi|114262 : GG-TAAGATAATC----T-T--CT--G-CTC----AAT-----------------CAGCA-GGG-AA-T---G-TTT-T-TCA---GGCAGTA---ACAAA-AACACTG-AT--AA
gi|114263 : TAAAC----T-T--TT--G-CTT----TAT-----------------CAACA-GGG-AA-T---G-TTT-A-TCT---GACAGCA---ACACATTAAATTG-AT--GACGTCACT-GTTTT
gi|114264 : AAAC----G-T--TT--T-CTT----TAT-----------------CAACA-AGG-AA-T---G-TTT-A-TCT---TTCAGCA---ACATA-CACATTG-GT--GACGCCATT-GTTTTT
gi|114265 : T--G-CTT----T-T-----------------CGGCA-GGG-AA-A---G-TTT-A-TCA---GACAG-----ACACA-CA--TTG-AT--GACGTCATT-GTTTT
blockSeqs : GA TTTAG AT TA TTAA CAGCAGGAACGATTTAT TGTTT T CAG TTT C AA C
blockSeqs : GG GT . . . . C T . T C AA .
blockSeqs : G T . . . . T . . . . . .
blockSeqs : A T . . . . G . . . . . .
blockSeqs : G T . . . . G . . . . . .
blockSeqs : G G . . . . G . . . . . .
blockSeqs : G G . . . . G . . . . . .
blockSeqs : A G . . . . T . . . . . .
blockSeqs : G G . . . . T . . . . . .
blockSeqs : G G . . . . G . . . . . .
blockSeqs : G G . . . . T . . . . . .
blockSeqs : T G . . . . T . . . . . .
blockSeqs : G G . . . . T . . . . . .
blockSeqs : G T . . . . G . . . . . .
blockSeqs : G G . . . . A . . . . . .
blockSeqs : G T . . . . T . . . . . .
blockSeqs : G G . . . . A . . . . . .
blockSeqs : G G . . . . G . . . . . .
blockSeqs : G G . . . . G . . . . . .
blockSeqs : A T . . . . T . . . . . .
blockSeqs : G A . . . . T . . . . . .
blockSeqs : A T . . . . G . . . . . .
blockSeqs : G T . . . . G . . . . . .
blockSeqs : G G . . . . T . . . . . .
blockSeqs : A T . . . . G . . . . . .
blockSeqs : T G . . . . G . . . . . .
blockSeqs : G T . . . . C . . . . . .
blockSeqs : G T . . . . G . . . . . .
blockSeqs : G T . . . . G . . . . . .
blockSeqs : . T . . . . G . . . . .
blockSeqs : . T . . . . G . . . . .
blockSeqs : . G . . . . G . . . . .
blockSeqs : . G . . . . T . . . . .
blockSeqs : . G . . . . G . . . . .
blockSeqs : . G . . . . G . . . . .
blockSeqs : . G . . . . G . . . . .
blockSeqs : . T . . . . T . . . . .
blockSeqs : . T . . . . T . . . . .
blockSeqs : . G . . . . T . . . . .
blockSeqs : . . . . . . A . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : TACGTAATAAAGCGGGGG-TAAGATAAAC----G-T--TT--G-CTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAATTG-AT--GACGTCATT-GTTTTT
finalCons : TACGTAATAAAGCGGGGG-TAAGATAAAC----G-T--TT--G-CTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAATTG-AT--GACGTCATT-GTTTTT
Alignments
lowQualScore : 0 88 666666 11 11 0 1111 66666666666666666 0 0 44444 0 0 1 111 222 0 2 22 1
lowQualScore : . .. ...... .. .. . .... ................. . . ..... . . . ... ... . . .. .
lowQualScore : 5 55 111111 33 22 9 9999 44444444444444444 9 9 44444 9 9 8 666 666 9 0 77 3
consensus : TACGTAATAAAGCGGGGG-TAAGATAAAC----G-T--TT--G-CTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAATTG-AT--GACGTCATT-GTTTTT
Reference ( family-506 ) : TACGTAATAAAGCGGGGG-TAAGATAAAC----G-T--TT--G-CTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAATTG-AT--GACGTCATT-GTTTTT
gi|114222 : TACATGATAAAGATGGGG-TAAGATAAAC----T-T--TT--G-CTT----TAT-----------------CAGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAGATGG-AT--GACATCATT-GTCTTT
gi|114223 : TGCATCATAAAGCGCAAG-TAACATAAAC----T-T--TG--G-CTT----TAT-----------------CAGCA-GGG-AA-C---G-TTT-A-TCT---TGCAGCA---ATACA-CAAATTG-AT--GACTTCATT-GTTTTT
gi|114224 : TACATTATAAAGCGTGGA-AATGTTAAAC----T-T--TT--G-CTT----TAT-----------------CGACA-GGG-AT-T---G-TTT-A-TCT---TGCAGCA---GCACA-CAAGTTG-AT--GACATCATT-GTTTTT
gi|114225 : TACAAAATAAAGCGCGA--TAAGA-AAAC----T-T--TT--G-CTT----TATCAGCAGGAACGATTTATCAGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAATTG-AG--GACATCATT-GTTTTT
gi|114226 : TGCATGATAAAGTGGGAG-TAAGATAAACTTTAG-C--TTTAG-CTT----TAG-----------------CGGCA-GGA-AATGTTTG-TTT-A-TCT---GGCAGCA---ACACA-CAAATTG-AT--GACATCATT-GTTTTT
gi|114227 : TACGTAATTAAGCAGGG--TAAGATAAAC----G-T--TT--A-CTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TACAGCA---AGACA-CAAATTG-AT--GACTTTAT
gi|114228 : TACGTAATTAAGCGGGG--CAAGACAAAC----G-T--TT--G-TTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TACATCA---AGACA-CAAATTG-AT--GACATTA-T-GTTT
gi|114229 : TACGTAATTAAGCGGGG--CAAGACAAAC----G-T--TT--A-TTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TACAGCA---AGACA-CAAATTG-AT--GACATTAT
gi|114230 : TATGTAATAAAGCAGGG--TAAGATAAAC----G-T--TT--G-CTT----TAT-----------------CAGCA-GGG-AA-T---G-TTT-C-TCT---TATACCA---ACAAA-CAAATTG-AT--GACATTAT
gi|114231 : TACGTAATAAGG-AGGGG-TAAAATAAAC----G-T--TT--A-CTT----T-T-----------------CGGCA-GGG-AA-T---G-TTT-A-TCT---TACAGCA---AGACA-CAAATTG-AT--GACATTAT
gi|114232 : TACGTGATAAAGCGGGG--TAAGAAAAAC----G-T--TT--A-ATT----TAT-----------------CGGCA-GGG-AA-G---G-TTA-A-TTT---TACAGCA---AGACA-CAAATTG-AT--GACATTAT
gi|114233 : TACGAAATAAAGCCGGG--TAAAATCAAC----G-T--TT--G-TTT----TAT-----------------CGGCA-GGG-AA-T---G-TTT-A-TCT---TACAGCA---AGACA-CAAATTG-AT--TACATTAT
gi|114234 : TACGTAATAAAGC-CGGG-TAGGACAAAC----GTT--TT--T-TTT----TAT-----------------CGGCA-GGA-AA-T---G-TTT-A-TCT---AACACGA---AGACA-CAAATTG-AT--GACATTAT
gi|114235 : TACATAAAAAGGCGGGG--TAAAATAAAC----G-T--TT--AATTT----TTT-----------------CGGAA-GGG-AA-T---G-TTT-A-TCT---TACAGCA---A---A-CAAA-TG-AT--GAC
gi|114236 : TACATAATAAAGTGGGG--TAAGATTACC----T-T--TT--T-CTT----TGT-----------------TTGCA-GGG-AA-G-----TTT-A-TCT---TGCAGCA---TCATG-CAAATTG-AT--GACGTCATT-GTTTT
gi|114237 : TACGCAATAAAGCGGGGA--AAGATAAAC----G-T--TC--G-CTT----TAT-----------------CAACA-GGG-AA-A---T-TTT-G-CCA---GGCAGCA---ACACA-AACATTG-AT--GACGTTATT-ATTTT
gi|114238 : ATAAATCGGAGG-CCAGATAAAC----T-T--TT--G--TT----TAT-----------------CGGCA-AGG-AA-T---G-TTT-A-TTT---TGAAGCA---ACATA-CAAACTG-AT--GACGTCGTT-ATTT
gi|114239 : tacaatTACATAATAAAGCGGGA--TGGGGTAAA-----G--------A-CTT----TAT-----------------CGACA-AGG-AA-A---G-TTC-A-TTT---TGCAGCA---ACACA-CACATTG-AT--AATGTAATT-GTTGTT
gi|114240 : TACACAATAAAGAGATGG-TAAGATAAAC----------------TT----TAT-----------------CGACA-GTG-AC-G---G-TTTTA-TCG---CGCAGCA---ACACA-AAAAATG-AT--GACGCCATA-GTTTTT
gi|114241 : TACATAATAAGTCGGGTG-TGAACTTAAT----G-T--TT--G-TTT----TAT-----------------CGGAA-GGGGAA-G---G-TTT-T-TCT---TGCAGCA---ACATA-AGAATTG-AC--GA
gi|114242 : TACATAATAAAACTTCGT-TAAGATAAAC----G-T--TT--G-----------------------------------------------TTT-A-TCT---TGCTGCA---ACACA-CAAATTG-AT--GACGTCATT-GTCTTTaat
gi|114243 : TACATAACAAAGCAAGAG-TGAGA--------------------------------------------------CA-GGG-A--------TTT---TTT---TGCAACA---ACACA-CACATTA-AT--GGCATCATT-GTTT
gi|114244 : TACATAACAAATCGGGGGATAAGAGAAAT----T-T--TC--A-CTT----AAT-----------------CGGCA-AGG-AA-T---G-CTC-A-TTT---TGCAATATTTACATG-TAAAATG-AT--GAGGTCGCC-ATTT
gi|114245 : AATTAGGCGGGGGGTAAGAAAGGG----A-T--AT--G-TTT----TAT-----------------CGGCA-CAA-AA-T---G-TTT-A-TCT---TGCAGCA--------------TA-AT--GACTTCATTCGTTTT
gi|114246 : tgcaaACATAATAAAGCGAGGG-TAATATAAAC----T-T--TT--G-CTT----TAT-----------------CGGCA-GGG-AA-G---G-TTT-A-TCT---TTCAGCA---ACGCA-TAAAGTG-AT--GATGTCATT-ATTT
gi|114247 : ACATAATAAAGCGGGTG-TAAGATAAAC----T-T--TT--G-CTT----TAT-----------------CAGCA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-AAA
gi|114248 : TAATAAAACGGGGG-TAAGCTAAAC----G-T--TT--G-CTT----TAT-----------------CGGCAGGGG-GA-T---G-TTT-A-ACTCAGTGCAGCA---ACACA-CAAACTG-AT--GACGTCATT-GTTT
gi|114249 : ataACATAACAAAGCGGGGG-TAAGATAAAT----T-T--TT--G-CTT----CAT-----------------TGACA-GGC-AA-G---A-GTT-A-TCT---TGCAGCA---AAACA-CAATTTG-AT--GACGT
gi|114250 : ACATGATAAAGCTCGGG-TCAGAGAACC----G-TATTT--G-CTT----CGT-----------------CAACA-GGA-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAATTG-AT--GACGTCATA-GATTTT
gi|114251 : ACATGATAAAACTGGGG-TAAGATAAAT----T-T--TT--G-CTT----TAT-----------------CGACA-AGG-AA-C---G-TTT-A-TCT---TGTAGCA---ACACA-TAAA
gi|114252 : ACATTATAAAGCAGGG--TAAGATAAAC----T-T--TT--G-CTT----T--------------------------------------CTT-A-TCT---TGCAGTA---ACACT-AAAATTG-AT--GACGTCATT-ATTTTT
gi|114253 : ACGTAATAAAGCGGGGA-TATGATAAAC----T-T--TT--G-CTG----TAT-----------------CGAAA-GGG-AA-G---A-TTT-A-TTT---TGCAG------CGTA-TAAACGG-AA--GACTCCATT-ATATTT
gi|114254 : TAATAAAATGGGGG-CAAGATAAAC----T-T--TT--G-CAT----TAT-----------------CAACA-GGG-AA-G---G-TTT-A-TCT---TGCAGCA---ACACA-CAAACTG-AT--GATGTCATT-GTTTTT
gi|114255 : aTAATAAAGCGAGGA-TAAGATAA-C----T-T--TT--G-CTT----TAT-----------------CGGCA-GAG-AA-G---G-TTT-A-TCT---TGCATCA---ACATA-CAACTTG-GT--GACGTCATT-GTTTTT
gi|114256 : aATAAAACGAGGG-TAATATAAAT----G-T--TT--G-ATT----TAT-----------------CGACA-GGG-AA-G---G-TTT-A-TC
gi|114257 : attTAATAAAGTGGGTG-TAATATAGAC------T--TT--A---------AT-----------------CGGTA-GGG-AA-G---GTTTT-A-TCT---------------------AATCG-AT--GACGTCATT-GTGTT
gi|114258 : ATAAAACGGTGA-TAAGATAAAT----G-T--TT--G-CTTTTAATAT-----------------CGGCA-AGG-AC-T---G-TTT-A-TCT---TGCTGTAT--ACACA-CAAATTT-AT--GACGTCATT-TTTTT
gi|114259 : AAAGTTGGAT-TAAGATTAAC----G-T--TT--G-TTT----TAT-----------------CTGCA-GGG-AA-G---G-TTT-A-CCT---TGCAGCA---ACACA-CAAATGG-AT--GACGCTCTT-GTTTTT
gi|114260 : GCAAGGG-TAAGATAAAC----G-T--TT--G-ATT----TAA-----------------CGGT--TGC-AA-G---T-GTC-ATTCT---TACAGCA---ACACA-TAACTTGCATAAGACCTCATT-GTTTTT
gi|114261 : GCAAGGG-TAAGATAAAC----G-T--TT--G-ATT----TAA-----------------CGGT--TGC-AA-G---T-GTC-ATTCT---TACAGCA---ACACA-TAACTTGCATAAGACCTCATT-GTTTTT
gi|114262 : GG-TAAGATAATC----T-T--CT--G-CTC----AAT-----------------CAGCA-GGG-AA-T---G-TTT-T-TCA---GGCAGTA---ACAAA-AACACTG-AT--AA
gi|114263 : TAAAC----T-T--TT--G-CTT----TAT-----------------CAACA-GGG-AA-T---G-TTT-A-TCT---GACAGCA---ACACATTAAATTG-AT--GACGTCACT-GTTTT
gi|114264 : AAAC----G-T--TT--T-CTT----TAT-----------------CAACA-AGG-AA-T---G-TTT-A-TCT---TTCAGCA---ACATA-CACATTG-GT--GACGCCATT-GTTTTT
gi|114265 : T--G-CTT----T-T-----------------CGGCA-GGG-AA-A---G-TTT-A-TCA---GACAG-----ACACA-CA--TTG-AT--GACGTCATT-GTTTT