lowQualScore : 11 111 1 1 11
lowQualScore : 6 66 222 1 111 33 77777 2 1 6 0 1 4 3 1 1 6 1 1 4 1 1 3 111 44 6 11 1
lowQualScore : . .. ... . ... .. ..... . . . . . . . . . . . . . . . . ... .. . .. .
lowQualScore : 0 33 111 2 888 88 44444 9 0 9 8 0 8 8 0 0 3 0 0 3 0 9 3 777 00 8 00 1
consensus : GATAATCCGGACGCGGTA-GT---A-G---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAA-ACAGTTNTAACATTCANA-T-GATATAAGCAGTTTGGATCGCGATGT-AGA-T-TACG-GAACGTGTAGGAGANA---GAA--C-TGTG--TGAA-AAA
Reference ( gi|44430 ) : GATAATCCGGGCGCGGTT-GT---A-G---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAA-ACAGTTTTAACATTCATA-T-GATATTAGCAGTTTGGATCGCGATGT-AGA-T-TACG-GAACGTGTAGGAGATA---GAA--C-TGTG--TAAA-AAA
gi|44429 : GATAATCCGGACGCGGTA-GT---A-G---TATCTT-TAATAC-CA--TTT-TAGTG-CATTTTTAAAA-ACAGTGTTAACATTCATA-T-GATATAAGCAGCTTGGATCGCGATGT-AGA-T-TACG-GGACGTGTAGGAGATA---GAA--C-TGTG--TAAATAAA
gi|44434 : GATAATCCGGACGCGGTA-GT---A-G---TATCTT-AAATAC-CA--TAT-TAGTG-CAATTTTAAAA-ACAGTTTTAACATTCAAA-T-GATATAAGGAGTTTGGATCGTGATGT-AGA-T-TACG-GAACGTGTAGGATATA---AAA--C-TGTG--TAAA-AAa
gi|44428 : GATAATCCGGACGCGGTA-GT---A-G---TATCTT-AAATAC-CA--TAT-TAGAA-CATTTTTAAAA-ATAGTTTTAACATTCAAA-T-GATATAAGCAGTTTGGATCGCGATGT-AGA-T-TACG-GTTTGTGTAGGAGATA---GAA--C-TGTG--TAAA-AAA
gi|44438 : GATAATCCGGATGCGGTA-GT---A-G---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAA-ACAGTTTTAACATTCA-A-TCGATATAAGCAGTTCGGATCGCGACGT-AGA-T-TACG-GAAAGTATAGGAGATA---GAA--C-TGTT--TAAA-AAAa
gi|44425 : GATAATCCGGACGCGGTA-GT---A-G---TATCTT-TAATAC-CA--TAT-AAGTG-CATTTTTAAAA-ACAGTTTTTACATTCAAA-T-GATATAAGCAGTTTGGATTGCGATGT-AGA-T-TACG-TAACGTGTAGGAGATA---GAA--C-CGTG--TGAA-AAAa
gi|44437 : GATAATCCGGACACGGTA-GT---A-T---TATCTT-AAATAC-CA--TAT-AAGTG-CATTTTTTAAA-ACAGTTTTTACATTCATA-G-GATATAAGCAGTTTGGATCGCGATAT-AGA-T-TACG-GAACATGTAGGAGATA---GAA--C-TGTG--TAAA-AAa
gi|44433 : GATAATCAGTACGCGGTA-GT---A-G---TATCTT-AAATAC-CA--TAT-AAGTG-CATTTTTAAAA-ACATTTTAAACATTCATA-T-GATATATGCAGTTTGGATCGCGATAT-AGA-T-TACG-GAACGTGTAGGAGATA---GAA--G-TGTG--TAAA-AAA
gi|44432 : GATAATCCGGACGCGGTA-A----A-G---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAA-ACAGTTTTAACATTCAAA-T-GAGATAAGCAGTTTGGATGTCGATGT-AGA-T-TACA-GAACGTGTAGGAGATA---GAA--T-TGTA--TAAA-AAAa
gi|44435 : GATAATCCGCACGCGGTA-GT---A-G---TATCTT-AAATAC-CA--TAT-TAGTG-TTTTTTTAAAAAACAGTTTTAACATTCAAA-T-GATATAAGTAGTTTTGATCGCGATGT-AGA-T-TACT-GAACGTGTAGGAGATA---GAA--C-TGTG--TAAA-
gi|44439 : GATAATCCGGACGCGGTA-GT---A-G---TATCTT-AAATAC-CA--TAT-TAGTG-CA-TTTTAAAA-ACAG--TTAACATTCATA-T-GATGTAAGCAGTTTGAATCGCGATAT-ATATT-TATG-GAACGTGTAGGAGATA---TAA--C-TGTG--TAAA-AAA
gi|44431 : GATAATTCGGACGCGGTA-GA---A-G---TATCTT-AAATAC-CA--AAT-AAGTG-CATTTTTAAAA-ACAGTTTTAACATTCAAA-A-GATTTAAGCAGTTTGGATCGTGATGT-AGA-T-TACG-GAACGTGTAGGAGATA---GAA--T-AGTG--TAAA-AAA
gi|44440 : GATAATCCGGACGCGGTA-GT---A-G---TATATT-AAATAC-CA--TAT-TAGTA-CATTTT-AAAA-ACAGTT--AACAT-CATA-T-GATGTAAGCAGTTTGAATCGCGACAT-AGA-T-TACG-GAACGTGTAGGAGATA---TAA--A-TGTG--TAAA-AAa
gi|44441 : GATAATCCGGACGCGGTG-GT---A-G---TATCTT-AAATAC-AA--TAT-TAGTG-TATTTT-AAAA-ACAGTTATAGCATTCATA-T-GATGTAAGCAGTTTGGATCGCGATAT-AGA-TAAACG-GAACGTGTAGGAGAAA---GAA--C-T-TG--TGA
gi|44444 : GATAATCCGGACGCGGTA-GT---A-G---TATCTT-AAATAC-AA--TAT-TAGTG-TA-TTTTAATA-ACAGTTATAACATTCATA-T-AATGTTAGCAGTTTGTTTCGCGATAT-AGA-TATACG-GAACGTGTAGGAAAAA---GAA--CTTGTGATTAAA-AA
gi|44423 : GATAATCCGGACGCGATT-GT---A-G---TATC------------------TAGTG-CATTTTTAAAA-ATAGTTTTTACATTCAAA-T-GATATAAGCAGTTTGAATCGCGATGT-AGA-A-TACG-TAACGTGTAGGAGATA---GAA--C-TGTG--TGAA-AAA
gi|44443 : GATAATCTGGACGCGGTA-GT---A-G---TATCTT-AAGTAC-CA--TAT-AAGTG-CATTTTTAAAA-ACAGTTTTAACATTCAAA-T-GATATAAGCAGTTTGGATCGCGATGT-AAA-T-GATA-GAAC-TGTTGGAAAa
gi|44447 : GATAATCCGGATGCGGTA-GT---AAG---TATCTT-AAATAC-AA--TAT-TAGTG-TATTTT-AATA-ACGGTTATAACATTTATA-T-GATGTAAGCAGTTTGGATCGCGATAT-AAA-TAAACG-GAACGTGTATGAGAAA---GAA--T-------TAAA-AAA
gi|44426 : GATAATCCGGACGCGGGTAGT---A-G---TATCT------------------AGTG-CGTTTTTACAA-ACAGTTATTACATTCAAC-T-GATATAAGCAGTTTGGATCGCGATGT-AGA-T-TAAG-GAAAGTGTAGGAGAAA---GAA--T-TGTG--TGAA-AAA
gi|44448 : GATAATCCGGACGCGGTA-GT---A-GAG-TATCTT-AAATAC-AAT-TAT-TAGTG-TA-TTTCAATA-ACACTTATAACAGTTATA-T-AATGTAAGCAGTTTGTATTGCGATAT-AAA-TATACG-GAACGTGTAGGAGAAA---GAA--C-T-TG--TGAa
gi|44451 : GATAATCCGGACGCGGTA-GT---A-GAG-TATCTC-AAATAC-AAA-TAT-TAGTG-TATTTT-AATT-ACAGCTATAACATTCATA-T-AATGTAAGCAGTTTTTATCGCAATAT-AAA-TATACG-GAACGTGTAGGAG--A---AAA--CTTGTGATTAAA-AA
gi|44452 : GATACCCCGGACGCGGTA-GT---A-GAATTATCTT-AAATACAAA--TAT-AAGTG-TA-TTTTAATA-ACAGTTATAACATTCATA-T-AATGTAAGCAGTTTGAATCGCGATATAAAA-A-TACG-GAACGTGTACGAGAAA---GAG--CTTGTG--T
gi|44446 : GATAATCCGAACGCGGTA-GTGAAA-G---TATCA--AAATAC-AAA-TAT-TCGTG-TGTTTT-AATA-ACAGTTGTAACATTCATA-T-AATGTAAGCAGTTTGTATCGCGATAT-AAA-TATACG-GAACGTGTAGGAGAAC---GAA--CTTGTGAATAAA-
gi|44421 : GATA-TCCGGATGCGG---GT---A-G---TATCT------------------AGTG-CATTTTTATAA-ACA---------TTCAAA-T-GATATAAGCAGTTTGGATCGCGATGT-AGA-T-TACG-T-ACGTGTAGGAGATA---GAA--C-TGTG--TGAA-AA
gi|44442 : GATAATCCGGACGCGGTA-GT---A-GAAGTATCTTAAAAAAA-AA--TGT-TAGTG-TA-CTTTGATA-ACAGTTATAACATTCATA-T-AATGTAAGCAGTTTGTATCGCGATAT-AGA-T-T-----AACGTGCAGGAGAAA---AAAACT-TGTGA-TGAA-AAA
gi|44450 : GATAATCCGGACGCGGTA-GT---A-GAAGTATCTT-AAAAAA-CAAATGT-TAGTG-TACTTT-GATA-ACAGTTACAACATTCATA-T-AATGTAAGCAGTTTGTATCGCGATAT-TAA-TATATT-TAACGTGCAGGAGAAA---AAAACT-TGTGA-TGAA-AAA
gi|44449 : GATAATCCGGACGCGGTA-GT---A-GAAGTATCTT-AAAAAA-CAAATGT-TAGTG-TACTTT-GATA-ACAGTTACAACATTCATA-T-AATGTAAGCAGTTTGTATCGCGATAT-TAA-TATATT-TAACGTGCAGGAGAAA---AAAACT-TGTGA-TGAA-AAAa
gi|44418 : GATA-TCTGGACGCGG---GA---A-G---TATCT------------------AGTG-CATTTTTATAA-ACA---------TTCGAA-T-GATAAAAGCAGTTTGGATCGCGATGT-AGG-T-TACG-T-ACGTGTAGGAGATA---GAA--T-TGTG--TGAA-AAAa
gi|44419 : GATA-TCCGGACGCGG---AA---A-G---TATCT------------------AGTG-CATTTTTATAA-ACA---------TTCGAA-T-GATAAAAGCAATTTGGATTGCGATGT-AGG-T-TACG-T-ACGTGTAGGAGATA---GAA--C-TGTG--TGAA-AAAa
gi|44420 : GATA-TCCGTACGCGG---GA---A-G---TATCT------------------AGTG-CATTTTTATAA-ACA---------TTCGAA-T-GATAAAATCAGTTTGAATCGCGATGT-AAG-T-TACATG--CGTGTAGGAGATA---GAA--C-TGTG--TGAA-AAAa
gi|44454 : ATCCGGACGCTGTA-GT---A-G---TATCTT-AAATAC-AA--TAT-TAGTGTCATATT--ATA-AGAGTTTTAACATTCGTA-T-GATGTAAGCAGTTTGGATCGCGATAT-AGA-TATACG-GAACGTGTAGGAGAAA---GAA--C-TGTG--TAAA-a
gi|44456 : tATCCGGACGCGGTA-GT---A-G---TATCTT-AAATACAAA--TAT-TAGTG-TA-TTTCAATA-ACAGTTATAACATTCATA-T-GGTGTAAGCAGTTTGGATCGCGATAT-AAA-TATACG-GAACGTGTAGGAGAAA---GAA--CTTGCGATTAAA-AA
gi|44457 : ATCCGGACGCGGTA-GT---A-G---TATATT-AAATAC-AA--TAT-TAGTT---TTTTTTATA-ACAGTTTTAACATTCATATT-CATA--AGCAGTTTGGGTCGCGATAT-AGA-TATACG-GAACGTGTAAGAGAAA---GAA--C-TGTG--TTAA-AAA
gi|44455 : ATCCGGACGCGGTA-GT---G-G---TATCT--------------AT-T---G-CATTTTTAAAA--TAGTTTTTACATTCAAA-T-GATATAAGCAGTTTGGATCGCGATGT-ATA-T-TACG-TAACGTGTAAGAGATA---GAA--C-TCTG--TGGA-AAA
gi|44458 : A--TAT-TAGTG-TATTTT-AAAA-ACAGTTATAACATTCATA-T-AATATAAGCAGTTTGTATCGCGATAT-AAA-TATACG-GAACGTGTAGGAGAAA---GAA--C-T-T---TAAA-AAAa
gi|44459 : aaA--TAT-TAGTG-TATCTTTATAA--CAGGCTTAACATTCATA-T-GATGTAAGCAGTTTGGATAGCGAAAT-AGA-TATACG-GAACGTGTACGAGAAA---GAA--C-TGTG--TAAA-AAA
gi|44460 : aA--TAT-TAGTG-TATTTT-AATG-ACAGTTATAACATTCATA-T-AATGTAAGCAGTTTGTATCACAACAT-AAA-TATACG-GAATGTGTAGGAGAAAGCTGAA--CTTGTGATTAAA-AA
gi|44436 : aA--TAT-TCGGA-CGCTTTTAA------GTATAAACTTTGGAG-T-GATAGAAACAGTTTGGATCGCGATGT-AGG-T-TACA-T-ACGTATAGGAGTTA---AAA--C-TTTG--TGAA-AA
gi|44453 : g--TATATAGTG-CATTTTTATAA-ACA---------TTCGAA-T-GATACAAGCAGTTTGGATCGCGACGT-AGG-T-TACG-T-ACGTGTAGGAGACA---GAA--C-TGTG--TGAA-GAA
gi|44424 : tatccggacgcagaaag--TATATAGTG-CATTTT-ATAA-AC--TTTTGG-------A-T-GATAGAAACAGTTTAGACCGCGATGT-AGG-T-TACG-T-ACGTGTAGGAGTTA---GAA--T-TTTG--TGAA-AAa
gi|44427 : gatagtcggacgtgtaaag--TATATAGTG-TATTTT-ATAA-AC--TTTTGA-------G-T-GATAGAAGCAAATTGGACCACGATGT-AGG-T--AGA-GTACGTGTAGGAGTTA---GAA--C-TTTG--TGAA-AA
gi|44422 : gatagtcggacgcgtaaagT-TAGTG-CATTTTTATAA-ATA---------TTCGAA-T-AATAAAAGCAGTTTGGATCGCGATGT-AGG-T-TACG-T-ACGTTTAGGAGATA---GAA--C-TGTG--
gi|44461 : gatattcgggcgcaagaagtat-TAGTG-TATTTT-AATA-ACAGTTATATCATTCATA-T-AATGTAAGCAGTTTGTATCGCGATAT-AAA-TATATG-TA-CGTGTAGGAGA-A---AAG--CTTGTGATTAAA-AA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|44445 ): GATATCCGGACACGGAAAGTATCCAGTGCATTTTTATAAACATT
Alignments
lowQualScore : 111 1
lowQualScore : 1 333 000 33 77777 0 0 0 5 0 0 1 4 1 0 0 4 0 11 1 111 33 4 2 77 2
lowQualScore : . ... ... .. ..... . . . . . . . . . . . . . .. . ... .. . . .. .
lowQualScore : 1 111 888 44 88888 9 9 6 4 4 9 0 8 3 9 9 0 9 55 0 777 99 6 9 11 2
consensus : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAAA-CAGTTNTAACATTCANATGATATAAGCAGTTTGGATCGCGATGT-AGA-T-TACG-GA-ACGTGTAGGAGANA---GAA--CTGTG-TGA--A-AAA
Reference ( family-504 ) : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAAA-CAGTTNTAACATTCANATGATATAAGCAGTTTGGATCGCGATGT-AGA-T-TACG-GA-ACGTGTAGGAGANA---GAA--CTGTG-TGA--A-AAA
gi|44418 : GATA-TCTGGACGCGG-GA-----AG---TATCT------------------AGTG-CATTTTTATAAA-CA---------TTCGAATGATAAAAGCAGTTTGGATCGCGATGT-AGG-T-TACG-T--ACGTGTAGGAGATA---GAA--TTGTG-TGA--A-AAA
gi|44419 : GATA-TCCGGACGCGG-AA-----AG---TATCT------------------AGTG-CATTTTTATAAA-CA---------TTCGAATGATAAAAGCAATTTGGATTGCGATGT-AGG-T-TACG-T--ACGTGTAGGAGATA---GAA--CTGTG-TGA--A-AAAa
gi|44420 : GATA-TCCGTACGCGG-GA-----AG---TATCT------------------AGTG-CATTTTTATAAA-CA---------TTCGAATGATAAAATCAGTTTGAATCGCGATGT-AAG-T-TACATG---CGTGTAGGAGATA---GAA--CTGTG-TGA--A-AAAa
gi|44421 : GATA-TCCGGATGCGG---GT---AG---TATCT------------------AGTG-CATTTTTATAAA-CA---------TTCAAATGATATAAGCAGTTTGGATCGCGATGT-AGA-T-TACG-T--ACGTGTAGGAGATA---GAA--CTGTG-TGA--A-AAa
gi|44422 : T-TAGTG-CATTTTTATAAA-TA---------TTCGAATAATAAAAGCAGTTTGGATCGCGATGT-AGG-T-TACG-T--ACGTTTAGGAGATA---GAA--CTGTG-
gi|44423 : gatattcgggcgcaagaagtatGATAATCCGGACGCGA-TTGT---AG---TATC------------------TAGTG-CATTTTTAAAAA-TAGTTTTTACATTCAAATGATATAAGCAGTTTGAATCGCGATGT-AGA-A-TACG-TA-ACGTGTAGGAGATA---GAA--CTGTG-TGA--A-AAA
gi|44424 : A--TAT--AGTG-CATTTT-----A-TA-----AACTTTTGGATGATAGAAACAGTTTAGACCGCGATGT-AGG-T-TACG-T--ACGTGTAGGAGTTA---GAA--TTTTG-TGA--A-AAa
gi|44425 : gatagtcggacgtgtaaagtGATAATCCGGACGCGG-TAGT---AG---TATCTT-TAATAC-CA--TAT-AAGTG-CATTTTTAAAAA-CAGTTTTTACATTCAAATGATATAAGCAGTTTGGATTGCGATGT-AGA-T-TACG-TA-ACGTGTAGGAGATA---GAA--CCGTG-TGA--A-AAA
gi|44426 : GATAATCCGGACGCGGGTAGT---AG---TATCT------------------AGTG-CGTTTTTACAAA-CAGTTATTACATTCAACTGATATAAGCAGTTTGGATCGCGATGT-AGA-T-TAAG-GA-AAGTGTAGGAGAAA---GAA--TTGTG-TGA--A-AAAa
gi|44427 : GATAGTC-GGACGCG-------------------T-AAA-----G--TATATAGTG-TATTTT-ATAAA-C--TTTTGA-------GTGATAGAAGCAAATTGGACCACGATGT-AGG-T--AGA-GT-ACGTGTAGGAGTTA---GAA--CTTTG-TGA--A-AAa
gi|44428 : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGAA-CATTTTTAAAAA-TAGTTTTAACATTCAAATGATATAAGCAGTTTGGATCGCGATGT-AGA-T-TACG-GT-TTGTGTAGGAGATA---GAA--CTGTG-TAA--A-AAA
gi|44429 : GATAATCCGGACGCGG-TAGT---AG---TATCTT-TAATAC-CA--TTT-TAGTG-CATTTTTAAAAA-CAGTGTTAACATTCATATGATATAAGCAGCTTGGATCGCGATGT-AGA-T-TACG-GG-ACGTGTAGGAGATA---GAA--CTGTG-TAA--ATAAAa
gi|44430 : GATAATCCGGGCGCGG-TTGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAAA-CAGTTTTAACATTCATATGATATTAGCAGTTTGGATCGCGATGT-AGA-T-TACG-GA-ACGTGTAGGAGATA---GAA--CTGTG-TAA--A-AAAa
gi|44431 : GATAATTCGGACGCGG-TAGA---AG---TATCTT-AAATAC-CA--AAT-AAGTG-CATTTTTAAAAA-CAGTTTTAACATTCAAAAGATTTAAGCAGTTTGGATCGTGATGT-AGA-T-TACG-GA-ACGTGTAGGAGATA---GAA--TAGTG-TAA--A-AAA
gi|44432 : GATAATCCGGACGCGG-TAA----AG---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAAA-CAGTTTTAACATTCAAATGAGATAAGCAGTTTGGATGTCGATGT-AGA-T-TACA-GA-ACGTGTAGGAGATA---GAA--TTGTA-TAA--A-AAAa
gi|44433 : GATAATCAGTACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-AAGTG-CATTTTTAAAAA-CATTTTAAACATTCATATGATATATGCAGTTTGGATCGCGATAT-AGA-T-TACG-GA-ACGTGTAGGAGATA---GAA--GTGTG-TAA--A-AAA
gi|44434 : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CAATTTTAAAAA-CAGTTTTAACATTCAAATGATATAAGGAGTTTGGATCGTGATGT-AGA-T-TACG-GA-ACGTGTAGGATATA---AAA--CTGTG-TAA--A-AAa
gi|44435 : GATAATCCGCACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-TTTTTTTAAAAAACAGTTTTAACATTCAAATGATATAAGTAGTTTTGATCGCGATGT-AGA-T-TACT-GA-ACGTGTAGGAGATA---GAA--CTGTG-TAA--A-
gi|44436 : A--TAT-TCGGA-CGCTTTTAAGTA-TA-----AACTTTGGAGTGATAGAAACAGTTTGGATCGCGATGT-AGG-T-TAC---ATACGTATAGGAGTTA---AAA--CTTTG-TGA--A-AA
gi|44437 : gGATAATCCGGACACGG-TAGT---AT---TATCTT-AAATAC-CA--TAT-AAGTG-CATTTTTTAAAA-CAGTTTTTACATTCATAGGATATAAGCAGTTTGGATCGCGATAT-AGA-T-TACG-GA-ACATGTAGGAGATA---GAA--CTGTG-TAA--A-AA
gi|44438 : GATAATCCGGATGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAAA-CAGTTTTAACATTCAATCGATATAAGCAGTTCGGATCGCGACGT-AGA-T-TACG-GA-AAGTATAGGAGATA---GAA--CTGTT-TAA--A-AAA
gi|44439 : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CA-TTTTAAAAA-CAGT--TAACATTCATATGATGTAAGCAGTTTGAATCGCGATAT-ATATT-TATG-GA-ACGTGTAGGAGATA---TAA--CTGTG-TAA--A-AAAa
gi|44440 : GATAATCCGGACGCGG-TAGT---AG---TATATT-AAATAC-CA--TAT-TAGTA-CATTTT-AAAAA-CAGTT--AACAT-CATATGATGTAAGCAGTTTGAATCGCGACAT-AGA-T-TACG-GA-ACGTGTAGGAGATA---TAA--ATGTG-TAA--A-AA
gi|44441 : GATAATCCGGACGCGG-TGGT---AG---TATCTT-AAATAC-AA--TAT-TAGTG-TATTTT-AAAAA-CAGTTATAGCATTCATATGATGTAAGCAGTTTGGATCGCGATAT-AGA-TAAACG-GA-ACGTGTAGGAGAAA---GAA--CT-TG-TGA--
gi|44442 : GATAATCCGGACGCGG-TAGT---AGAAGTATCTTAAAAAAA-AA--TGT-TAGTG-TA-CTTTGATAA-CAGTTATAACATTCATATAATGTAAGCAGTTTGTATCGCGATAT-AGA-T-T-----A-ACGTGCAGGAGAAA---AAAACTTGTGATGA--A-AAA
gi|44443 : GATAATCTGGACGCGG-TAGT---AG---TATCTT-AAGTAC-CA--TAT-AAGTG-CATTTTTAAAAA-CAGTTTTAACATTCAAATGATATAAGCAGTTTGGATCGCGATGT-AAA-T-GATA-GA-AC-TGTTGGAAA
gi|44444 : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-AA--TAT-TAGTG-TA-TTTTAATAA-CAGTTATAACATTCATATAATGTTAGCAGTTTGTTTCGCGATAT-AGA-TATACG-GA-ACGTGTAGGAAAAA---GAA--CT-TG-TGATTA-AAA
gi|44446 : GATAATCCGAACGCGG-TAGTGAAAG---TATCA--AAATAC-AAA-TAT-TCGTG-TGTTTT-AATAA-CAGTTGTAACATTCATATAATGTAAGCAGTTTGTATCGCGATAT-AAA-TATACG-GA-ACGTGTAGGAGAAC---GAA--CT-TG-TGA--ATAAAa
gi|44447 : GATAATCCGGATGCGG-TAGTA--AG---TATCTT-AAATAC-AA--TAT-TAGTG-TA-TTTTAATAA-CGGTTATAACATTTATATGATGTAAGCAGTTTGGATCGCGATAT-AAA-TAAACG-GA-ACGTGTATGAGAAA---GAA--TTa
gi|44448 : GATAATCCGGACGCGG-TAGT---AGAG-TATCTT-AAATAC-AAT-TAT-TAGTG-TA-TTTCAATAA-CACTTATAACAGTTATATAATGTAAGCAGTTTGTATTGCGATAT-AAA-TATACG-GA-ACGTGTAGGAGAAA---GAA--CT-TG-TGA--aaaaaa
gi|44449 : GATAATCCGGACGCGG-TAGT---AGAAGTATCTT-AAAAAA-CAAATGT-TAGTG-TACTTT-GATAA-CAGTTACAACATTCATATAATGTAAGCAGTTTGTATCGCGATAT-TAA-TATATT-TA-ACGTGCAGGAGAAA---AAAACTTGTGATGA--A-AAA
gi|44450 : GATAATCCGGACGCGG-TAGT---AGAAGTATCTT-AAAAAA-CAAATGT-TAGTG-TACTTT-GATAA-CAGTTACAACATTCATATAATGTAAGCAGTTTGTATCGCGATAT-TAA-TATATT-TA-ACGTGCAGGAGAAA---AAAACTTGTGATGA--A-AAAa
gi|44451 : GATAATCCGGACGCGG-TAGT---AGAG-TATCTC-AAATAC-AAA-TAT-TAGTG-TATTTT-AATTA-CAGCTATAACATTCATATAATGTAAGCAGTTTTTATCGCAATAT-AAA-TATACG-GA-ACGTGTAGGAGAA-----AA--CT-TG-TGATTA-AAAa
gi|44452 : GATACCCCGGACGCGG-TAGT---AGAATTATCTT-AAATACAAA--TAT-AAGTG-TA-TTTTAATAA-CAGTTATAACATTCATATAATGTAAGCAGTTTGAATCGCGATATAAAA-A-TACG-GA-ACGTGTACGAGAAA---GAG--CT-TG-TGa
gi|44453 : ATCCGGACGCAG-AA-----AG---TAT----------------AT--AGTG-CATTTTTATAAA-CA---------TTCGAATGATACAAGCAGTTTGGATCGCGACGT-AGG-T-TACG-T--ACGTGTAGGAGACA---GAA--CTGTG-TGA--A-GAAt
gi|44454 : tATCCGGACGCTG-TAGT---AG---TATCTT-AAATAC-AA--TAT-TAGTGTCATATT--ATAA-GAGTTTTAACATTCGTATGATGTAAGCAGTTTGGATCGCGATAT-AGA-TATACG-GA-ACGTGTAGGAGAAA---GAA--CTGTG-TAA--A-a
gi|44455 : tATCCGGACGCGG-TAGT---GG---TATCT--------------AT-T---G-CATTTTTAAAA--TAGTTTTTACATTCAAATGATATAAGCAGTTTGGATCGCGATGT-ATA-T-TACG-TA-ACGTGTAAGAGATA---GAA--CTCTG-TGG--A-AAA
gi|44456 : ATCCGGACGCGG-TAGT---AG---TATCTT-AAATACAAA--TAT-TAGTG-TA-TTTCAATAA-CAGTTATAACATTCATATGGTGTAAGCAGTTTGGATCGCGATAT-AAA-TATACG-GA-ACGTGTAGGAGAAA---GAA--CT-TG-CGATTA-AAAa
gi|44457 : ATCCGGACGCGG-TAGT---AG---TATATT-AAATAC-AA--TAT-TAGTT---TTTTTTATAA-CAGTTTTAACATTCATATT-CATAAGCAGTTTGGGTCGCGATAT-AGA-TATACG-GA-ACGTGTAAGAGAAA---GAA--CTGTG-TTA--A-AAAa
gi|44458 : A--TAT-TAGTG-TATTTT-AAAAA-CAGTTATAACATTCATATAATATAAGCAGTTTGTATCGCGATAT-AAA-TATACG-GA-ACGTGTAGGAGAAA---GAA--CT-T--TAA--A-AAA
gi|44459 : aaA--TAT-TAGTG-TATCTTTATAA--CAGGCTTAACATTCATATGATGTAAGCAGTTTGGATAGCGAAAT-AGA-TATACG-GA-ACGTGTACGAGAAA---GAA--CTGTG-TAA--A-AAA
gi|44460 : aA--TAT-TAGTG-TATTTT-AATGA-CAGTTATAACATTCATATAATGTAAGCAGTTTGTATCACAACAT-AAA-TATACG-GA-ATGTGTAGGAGAAAGCTGAA--CT-TG-TGATTA-AAA
gi|44461 : a-TAGTG-TATTTT-AATAA-CAGTTATATCATTCATATAATGTAAGCAGTTTGTATCGCGATAT-AAA-TATATG-TA--CGTGTAGGAGAAA----AG--CT-TG-TGATTA-AAAa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44445 ): GATATCCGGACACGGAAAGTATCCAGTGCATTTTTATAAACATT
Alignments
lowQualScore : 111 1
lowQualScore : 1 333 000 33 77777 0 0 0 5 0 0 1 4 1 0 0 4 0 11 1 111 33 4 2 77 2
lowQualScore : . ... ... .. ..... . . . . . . . . . . . . . .. . ... .. . . .. .
lowQualScore : 1 111 888 44 88888 9 9 6 4 4 9 0 8 3 9 9 0 9 55 0 777 99 6 9 11 2
consensus : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAAA-CAGTTNTAACATTCANATGATATAAGCAGTTTGGATCGCGATGT-AGA-T-TACG-GA-ACGTGTAGGAGANA---GAA--CTGTG-TGA--A-AAA
Reference ( family-504 ) : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAAA-CAGTTNTAACATTCANATGATATAAGCAGTTTGGATCGCGATGT-AGA-T-TACG-GA-ACGTGTAGGAGANA---GAA--CTGTG-TGA--A-AAA
gi|44418 : GATA-TCTGGACGCGG-GA-----AG---TATCT------------------AGTG-CATTTTTATAAA-CA---------TTCGAATGATAAAAGCAGTTTGGATCGCGATGT-AGG-T-TACG-T--ACGTGTAGGAGATA---GAA--TTGTG-TGA--A-AAA
gi|44419 : GATA-TCCGGACGCGG-AA-----AG---TATCT------------------AGTG-CATTTTTATAAA-CA---------TTCGAATGATAAAAGCAATTTGGATTGCGATGT-AGG-T-TACG-T--ACGTGTAGGAGATA---GAA--CTGTG-TGA--A-AAAa
gi|44420 : GATA-TCCGTACGCGG-GA-----AG---TATCT------------------AGTG-CATTTTTATAAA-CA---------TTCGAATGATAAAATCAGTTTGAATCGCGATGT-AAG-T-TACATG---CGTGTAGGAGATA---GAA--CTGTG-TGA--A-AAAa
gi|44421 : GATA-TCCGGATGCGG---GT---AG---TATCT------------------AGTG-CATTTTTATAAA-CA---------TTCAAATGATATAAGCAGTTTGGATCGCGATGT-AGA-T-TACG-T--ACGTGTAGGAGATA---GAA--CTGTG-TGA--A-AAa
gi|44422 : T-TAGTG-CATTTTTATAAA-TA---------TTCGAATAATAAAAGCAGTTTGGATCGCGATGT-AGG-T-TACG-T--ACGTTTAGGAGATA---GAA--CTGTG-
gi|44423 : gatattcgggcgcaagaagtatGATAATCCGGACGCGA-TTGT---AG---TATC------------------TAGTG-CATTTTTAAAAA-TAGTTTTTACATTCAAATGATATAAGCAGTTTGAATCGCGATGT-AGA-A-TACG-TA-ACGTGTAGGAGATA---GAA--CTGTG-TGA--A-AAA
gi|44424 : A--TAT--AGTG-CATTTT-----A-TA-----AACTTTTGGATGATAGAAACAGTTTAGACCGCGATGT-AGG-T-TACG-T--ACGTGTAGGAGTTA---GAA--TTTTG-TGA--A-AAa
gi|44425 : gatagtcggacgtgtaaagtGATAATCCGGACGCGG-TAGT---AG---TATCTT-TAATAC-CA--TAT-AAGTG-CATTTTTAAAAA-CAGTTTTTACATTCAAATGATATAAGCAGTTTGGATTGCGATGT-AGA-T-TACG-TA-ACGTGTAGGAGATA---GAA--CCGTG-TGA--A-AAA
gi|44426 : GATAATCCGGACGCGGGTAGT---AG---TATCT------------------AGTG-CGTTTTTACAAA-CAGTTATTACATTCAACTGATATAAGCAGTTTGGATCGCGATGT-AGA-T-TAAG-GA-AAGTGTAGGAGAAA---GAA--TTGTG-TGA--A-AAAa
gi|44427 : GATAGTC-GGACGCG-------------------T-AAA-----G--TATATAGTG-TATTTT-ATAAA-C--TTTTGA-------GTGATAGAAGCAAATTGGACCACGATGT-AGG-T--AGA-GT-ACGTGTAGGAGTTA---GAA--CTTTG-TGA--A-AAa
gi|44428 : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGAA-CATTTTTAAAAA-TAGTTTTAACATTCAAATGATATAAGCAGTTTGGATCGCGATGT-AGA-T-TACG-GT-TTGTGTAGGAGATA---GAA--CTGTG-TAA--A-AAA
gi|44429 : GATAATCCGGACGCGG-TAGT---AG---TATCTT-TAATAC-CA--TTT-TAGTG-CATTTTTAAAAA-CAGTGTTAACATTCATATGATATAAGCAGCTTGGATCGCGATGT-AGA-T-TACG-GG-ACGTGTAGGAGATA---GAA--CTGTG-TAA--ATAAAa
gi|44430 : GATAATCCGGGCGCGG-TTGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAAA-CAGTTTTAACATTCATATGATATTAGCAGTTTGGATCGCGATGT-AGA-T-TACG-GA-ACGTGTAGGAGATA---GAA--CTGTG-TAA--A-AAAa
gi|44431 : GATAATTCGGACGCGG-TAGA---AG---TATCTT-AAATAC-CA--AAT-AAGTG-CATTTTTAAAAA-CAGTTTTAACATTCAAAAGATTTAAGCAGTTTGGATCGTGATGT-AGA-T-TACG-GA-ACGTGTAGGAGATA---GAA--TAGTG-TAA--A-AAA
gi|44432 : GATAATCCGGACGCGG-TAA----AG---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAAA-CAGTTTTAACATTCAAATGAGATAAGCAGTTTGGATGTCGATGT-AGA-T-TACA-GA-ACGTGTAGGAGATA---GAA--TTGTA-TAA--A-AAAa
gi|44433 : GATAATCAGTACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-AAGTG-CATTTTTAAAAA-CATTTTAAACATTCATATGATATATGCAGTTTGGATCGCGATAT-AGA-T-TACG-GA-ACGTGTAGGAGATA---GAA--GTGTG-TAA--A-AAA
gi|44434 : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CAATTTTAAAAA-CAGTTTTAACATTCAAATGATATAAGGAGTTTGGATCGTGATGT-AGA-T-TACG-GA-ACGTGTAGGATATA---AAA--CTGTG-TAA--A-AAa
gi|44435 : GATAATCCGCACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-TTTTTTTAAAAAACAGTTTTAACATTCAAATGATATAAGTAGTTTTGATCGCGATGT-AGA-T-TACT-GA-ACGTGTAGGAGATA---GAA--CTGTG-TAA--A-
gi|44436 : A--TAT-TCGGA-CGCTTTTAAGTA-TA-----AACTTTGGAGTGATAGAAACAGTTTGGATCGCGATGT-AGG-T-TAC---ATACGTATAGGAGTTA---AAA--CTTTG-TGA--A-AA
gi|44437 : gGATAATCCGGACACGG-TAGT---AT---TATCTT-AAATAC-CA--TAT-AAGTG-CATTTTTTAAAA-CAGTTTTTACATTCATAGGATATAAGCAGTTTGGATCGCGATAT-AGA-T-TACG-GA-ACATGTAGGAGATA---GAA--CTGTG-TAA--A-AA
gi|44438 : GATAATCCGGATGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAAA-CAGTTTTAACATTCAATCGATATAAGCAGTTCGGATCGCGACGT-AGA-T-TACG-GA-AAGTATAGGAGATA---GAA--CTGTT-TAA--A-AAA
gi|44439 : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CA-TTTTAAAAA-CAGT--TAACATTCATATGATGTAAGCAGTTTGAATCGCGATAT-ATATT-TATG-GA-ACGTGTAGGAGATA---TAA--CTGTG-TAA--A-AAAa
gi|44440 : GATAATCCGGACGCGG-TAGT---AG---TATATT-AAATAC-CA--TAT-TAGTA-CATTTT-AAAAA-CAGTT--AACAT-CATATGATGTAAGCAGTTTGAATCGCGACAT-AGA-T-TACG-GA-ACGTGTAGGAGATA---TAA--ATGTG-TAA--A-AA
gi|44441 : GATAATCCGGACGCGG-TGGT---AG---TATCTT-AAATAC-AA--TAT-TAGTG-TATTTT-AAAAA-CAGTTATAGCATTCATATGATGTAAGCAGTTTGGATCGCGATAT-AGA-TAAACG-GA-ACGTGTAGGAGAAA---GAA--CT-TG-TGA--
gi|44442 : GATAATCCGGACGCGG-TAGT---AGAAGTATCTTAAAAAAA-AA--TGT-TAGTG-TA-CTTTGATAA-CAGTTATAACATTCATATAATGTAAGCAGTTTGTATCGCGATAT-AGA-T-T-----A-ACGTGCAGGAGAAA---AAAACTTGTGATGA--A-AAA
gi|44443 : GATAATCTGGACGCGG-TAGT---AG---TATCTT-AAGTAC-CA--TAT-AAGTG-CATTTTTAAAAA-CAGTTTTAACATTCAAATGATATAAGCAGTTTGGATCGCGATGT-AAA-T-GATA-GA-AC-TGTTGGAAA
gi|44444 : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-AA--TAT-TAGTG-TA-TTTTAATAA-CAGTTATAACATTCATATAATGTTAGCAGTTTGTTTCGCGATAT-AGA-TATACG-GA-ACGTGTAGGAAAAA---GAA--CT-TG-TGATTA-AAA
gi|44446 : GATAATCCGAACGCGG-TAGTGAAAG---TATCA--AAATAC-AAA-TAT-TCGTG-TGTTTT-AATAA-CAGTTGTAACATTCATATAATGTAAGCAGTTTGTATCGCGATAT-AAA-TATACG-GA-ACGTGTAGGAGAAC---GAA--CT-TG-TGA--ATAAAa
gi|44447 : GATAATCCGGATGCGG-TAGTA--AG---TATCTT-AAATAC-AA--TAT-TAGTG-TA-TTTTAATAA-CGGTTATAACATTTATATGATGTAAGCAGTTTGGATCGCGATAT-AAA-TAAACG-GA-ACGTGTATGAGAAA---GAA--TTa
gi|44448 : GATAATCCGGACGCGG-TAGT---AGAG-TATCTT-AAATAC-AAT-TAT-TAGTG-TA-TTTCAATAA-CACTTATAACAGTTATATAATGTAAGCAGTTTGTATTGCGATAT-AAA-TATACG-GA-ACGTGTAGGAGAAA---GAA--CT-TG-TGA--aaaaaa
gi|44449 : GATAATCCGGACGCGG-TAGT---AGAAGTATCTT-AAAAAA-CAAATGT-TAGTG-TACTTT-GATAA-CAGTTACAACATTCATATAATGTAAGCAGTTTGTATCGCGATAT-TAA-TATATT-TA-ACGTGCAGGAGAAA---AAAACTTGTGATGA--A-AAA
gi|44450 : GATAATCCGGACGCGG-TAGT---AGAAGTATCTT-AAAAAA-CAAATGT-TAGTG-TACTTT-GATAA-CAGTTACAACATTCATATAATGTAAGCAGTTTGTATCGCGATAT-TAA-TATATT-TA-ACGTGCAGGAGAAA---AAAACTTGTGATGA--A-AAAa
gi|44451 : GATAATCCGGACGCGG-TAGT---AGAG-TATCTC-AAATAC-AAA-TAT-TAGTG-TATTTT-AATTA-CAGCTATAACATTCATATAATGTAAGCAGTTTTTATCGCAATAT-AAA-TATACG-GA-ACGTGTAGGAGAA-----AA--CT-TG-TGATTA-AAAa
gi|44452 : GATACCCCGGACGCGG-TAGT---AGAATTATCTT-AAATACAAA--TAT-AAGTG-TA-TTTTAATAA-CAGTTATAACATTCATATAATGTAAGCAGTTTGAATCGCGATATAAAA-A-TACG-GA-ACGTGTACGAGAAA---GAG--CT-TG-TGa
gi|44453 : ATCCGGACGCAG-AA-----AG---TAT----------------AT--AGTG-CATTTTTATAAA-CA---------TTCGAATGATACAAGCAGTTTGGATCGCGACGT-AGG-T-TACG-T--ACGTGTAGGAGACA---GAA--CTGTG-TGA--A-GAAt
gi|44454 : tATCCGGACGCTG-TAGT---AG---TATCTT-AAATAC-AA--TAT-TAGTGTCATATT--ATAA-GAGTTTTAACATTCGTATGATGTAAGCAGTTTGGATCGCGATAT-AGA-TATACG-GA-ACGTGTAGGAGAAA---GAA--CTGTG-TAA--A-a
gi|44455 : tATCCGGACGCGG-TAGT---GG---TATCT--------------AT-T---G-CATTTTTAAAA--TAGTTTTTACATTCAAATGATATAAGCAGTTTGGATCGCGATGT-ATA-T-TACG-TA-ACGTGTAAGAGATA---GAA--CTCTG-TGG--A-AAA
gi|44456 : ATCCGGACGCGG-TAGT---AG---TATCTT-AAATACAAA--TAT-TAGTG-TA-TTTCAATAA-CAGTTATAACATTCATATGGTGTAAGCAGTTTGGATCGCGATAT-AAA-TATACG-GA-ACGTGTAGGAGAAA---GAA--CT-TG-CGATTA-AAAa
gi|44457 : ATCCGGACGCGG-TAGT---AG---TATATT-AAATAC-AA--TAT-TAGTT---TTTTTTATAA-CAGTTTTAACATTCATATT-CATAAGCAGTTTGGGTCGCGATAT-AGA-TATACG-GA-ACGTGTAAGAGAAA---GAA--CTGTG-TTA--A-AAAa
gi|44458 : A--TAT-TAGTG-TATTTT-AAAAA-CAGTTATAACATTCATATAATATAAGCAGTTTGTATCGCGATAT-AAA-TATACG-GA-ACGTGTAGGAGAAA---GAA--CT-T--TAA--A-AAA
gi|44459 : aaA--TAT-TAGTG-TATCTTTATAA--CAGGCTTAACATTCATATGATGTAAGCAGTTTGGATAGCGAAAT-AGA-TATACG-GA-ACGTGTACGAGAAA---GAA--CTGTG-TAA--A-AAA
gi|44460 : aA--TAT-TAGTG-TATTTT-AATGA-CAGTTATAACATTCATATAATGTAAGCAGTTTGTATCACAACAT-AAA-TATACG-GA-ATGTGTAGGAGAAAGCTGAA--CT-TG-TGATTA-AAA
gi|44461 : a-TAGTG-TATTTT-AATAA-CAGTTATATCATTCATATAATGTAAGCAGTTTGTATCGCGATAT-AAA-TATATG-TA--CGTGTAGGAGAAA----AG--CT-TG-TGATTA-AAAa
blockSeqs : G GAA AAG TA CAAA T G T A A AT T GCT AC G A TT T
blockSeqs : . A AAG T CAAA T G T A A A T . AC G A TT T
blockSeqs : . . AAG T AAA T G A A A A T . AC G A TT .
blockSeqs : . . AAT T AAT T G T A A A T . . G . TT .
blockSeqs : . . AG T AAA T G T A A T T . . G . TT .
blockSeqs : . . AG T AAA T G T G A T T . . T . . .
blockSeqs : . . . T AAA T G T A A G T . . G . . .
blockSeqs : . . . T CA T G T A A A A . . G . . .
blockSeqs : . . . T CA T T T A A A T . . T . . .
blockSeqs : . . . T CA T G T T A A T . . G . . .
blockSeqs : . . . T CA T G T T A A T . . G . . .
blockSeqs : . . . T CA T G T A A A T . . G . . .
blockSeqs : . . . T CA T G T A A A T . . G . . .
blockSeqs : . . . T CA T G T T A A T . . G . . .
blockSeqs : . . . T CA T G A A A A T . . G . . .
blockSeqs : . . . T CA T G A A . A T . . G . . .
blockSeqs : . . . T CA T G T A . A T . . G . . .
blockSeqs : . . . T CA T G A T . A T . . T . . .
blockSeqs : . . . T CA T G G A . A T . . G . . .
blockSeqs : . . . T CA T G A T . A T . . G . . .
blockSeqs : . . . T AA T G A T . A T . . G . . .
blockSeqs : . . . T AA T C A T . A T . . G . . .
blockSeqs : . . . C CA T G A T . A A . . G . . .
blockSeqs : . . . T AA C G A A . A A . . G . . .
blockSeqs : . . . T AA T G A T . A A . . G . . .
blockSeqs : . . . T AA T G T T . A A . . G . . .
blockSeqs : . . . T AA T G T T . A A . . G . . .
blockSeqs : . . . . G C G A T . A A . . C . . .
blockSeqs : . . . . . T G T T . A A . . G . . .
blockSeqs : . . . . . T G A T . A A . . G . . .
blockSeqs : . . . . . . G T T . A A . . . . . .
blockSeqs : . . . . . . G A T . A A . . . . . .
blockSeqs : . . . . . . G A A . A C . . . . . .
blockSeqs : . . . . . . G . T . A A . . . . . .
blockSeqs : . . . . . . . . A . A T . . . . . .
blockSeqs : . . . T . A A . . . . . .
blockSeqs : . . . T . . A . . . . .
blockSeqs : . . . T . . A . . . . .
blockSeqs : . . . T . . A . . . .
blockSeqs : . . . T . . A . . . .
blockSeqs : . . . T . . A . .
blockSeqs : . . . . . .
blockSeqCons : T* CA*** A*
originalCons : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAAA-CAGTTNTAACATTCANATGATATAAGCAGTTTGGATCGCGATGT-AGA-T-TACG-GA-ACGTGTAGGAGANA---GAA--CTGTG-TGA--A-AAA
finalCons : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATACCA---TAT-TAGTG-CATTTTTAAAAA-CAGTTNTAACATTCANATGATATAAGCAGTTTGGATCGCGATGT-AGA-T-TACG-GA-ACGTGTAGGAGANA---GAA--CTGTG-TGA--A-AAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44445 ): GATATCCGGACACGGAAAGTATCCAGTGCATTTTTATAAACATT
Alignments
lowQualScore : 111 1
lowQualScore : 1 333 000 33 77777 0 0 0 5 0 0 1 4 1 0 0 4 0 11 1 111 33 4 2 77 2
lowQualScore : . ... ... .. ..... . . . . . . . . . . . . . .. . ... .. . . .. .
lowQualScore : 1 111 888 44 88888 9 9 6 4 4 9 0 8 3 9 9 0 9 55 0 777 99 6 9 11 2
consensus : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAAA-CAGTTNTAACATTCANATGATATAAGCAGTTTGGATCGCGATGT-AGA-T-TACG-GA-ACGTGTAGGAGANA---GAA--CTGTG-TGA--A-AAA
Reference ( family-504 ) : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAAA-CAGTTNTAACATTCANATGATATAAGCAGTTTGGATCGCGATGT-AGA-T-TACG-GA-ACGTGTAGGAGANA---GAA--CTGTG-TGA--A-AAA
gi|44418 : GATA-TCTGGACGCGG-GA-----AG---TATCT------------------AGTG-CATTTTTATAAA-CA---------TTCGAATGATAAAAGCAGTTTGGATCGCGATGT-AGG-T-TACG-T--ACGTGTAGGAGATA---GAA--TTGTG-TGA--A-AAA
gi|44419 : GATA-TCCGGACGCGG-AA-----AG---TATCT------------------AGTG-CATTTTTATAAA-CA---------TTCGAATGATAAAAGCAATTTGGATTGCGATGT-AGG-T-TACG-T--ACGTGTAGGAGATA---GAA--CTGTG-TGA--A-AAAa
gi|44420 : GATA-TCCGTACGCGG-GA-----AG---TATCT------------------AGTG-CATTTTTATAAA-CA---------TTCGAATGATAAAATCAGTTTGAATCGCGATGT-AAG-T-TACATG---CGTGTAGGAGATA---GAA--CTGTG-TGA--A-AAAa
gi|44421 : GATA-TCCGGATGCGG---GT---AG---TATCT------------------AGTG-CATTTTTATAAA-CA---------TTCAAATGATATAAGCAGTTTGGATCGCGATGT-AGA-T-TACG-T--ACGTGTAGGAGATA---GAA--CTGTG-TGA--A-AAa
gi|44422 : T-TAGTG-CATTTTTATAAA-TA---------TTCGAATAATAAAAGCAGTTTGGATCGCGATGT-AGG-T-TACG-T--ACGTTTAGGAGATA---GAA--CTGTG-
gi|44423 : gatattcgggcgcaagaagtatGATAATCCGGACGCGA-TTGT---AG---TATC------------------TAGTG-CATTTTTAAAAA-TAGTTTTTACATTCAAATGATATAAGCAGTTTGAATCGCGATGT-AGA-A-TACG-TA-ACGTGTAGGAGATA---GAA--CTGTG-TGA--A-AAA
gi|44424 : A--TAT--AGTG-CATTTT-----A-TA-----AACTTTTGGATGATAGAAACAGTTTAGACCGCGATGT-AGG-T-TACG-T--ACGTGTAGGAGTTA---GAA--TTTTG-TGA--A-AAa
gi|44425 : gatagtcggacgtgtaaagtGATAATCCGGACGCGG-TAGT---AG---TATCTT-TAATAC-CA--TAT-AAGTG-CATTTTTAAAAA-CAGTTTTTACATTCAAATGATATAAGCAGTTTGGATTGCGATGT-AGA-T-TACG-TA-ACGTGTAGGAGATA---GAA--CCGTG-TGA--A-AAA
gi|44426 : GATAATCCGGACGCGGGTAGT---AG---TATCT------------------AGTG-CGTTTTTACAAA-CAGTTATTACATTCAACTGATATAAGCAGTTTGGATCGCGATGT-AGA-T-TAAG-GA-AAGTGTAGGAGAAA---GAA--TTGTG-TGA--A-AAAa
gi|44427 : GATAGTC-GGACGCG-------------------T-AAA-----G--TATATAGTG-TATTTT-ATAAA-C--TTTTGA-------GTGATAGAAGCAAATTGGACCACGATGT-AGG-T--AGA-GT-ACGTGTAGGAGTTA---GAA--CTTTG-TGA--A-AAa
gi|44428 : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGAA-CATTTTTAAAAA-TAGTTTTAACATTCAAATGATATAAGCAGTTTGGATCGCGATGT-AGA-T-TACG-GT-TTGTGTAGGAGATA---GAA--CTGTG-TAA--A-AAA
gi|44429 : GATAATCCGGACGCGG-TAGT---AG---TATCTT-TAATAC-CA--TTT-TAGTG-CATTTTTAAAAA-CAGTGTTAACATTCATATGATATAAGCAGCTTGGATCGCGATGT-AGA-T-TACG-GG-ACGTGTAGGAGATA---GAA--CTGTG-TAA--ATAAAa
gi|44430 : GATAATCCGGGCGCGG-TTGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAAA-CAGTTTTAACATTCATATGATATTAGCAGTTTGGATCGCGATGT-AGA-T-TACG-GA-ACGTGTAGGAGATA---GAA--CTGTG-TAA--A-AAAa
gi|44431 : GATAATTCGGACGCGG-TAGA---AG---TATCTT-AAATAC-CA--AAT-AAGTG-CATTTTTAAAAA-CAGTTTTAACATTCAAAAGATTTAAGCAGTTTGGATCGTGATGT-AGA-T-TACG-GA-ACGTGTAGGAGATA---GAA--TAGTG-TAA--A-AAA
gi|44432 : GATAATCCGGACGCGG-TAA----AG---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAAA-CAGTTTTAACATTCAAATGAGATAAGCAGTTTGGATGTCGATGT-AGA-T-TACA-GA-ACGTGTAGGAGATA---GAA--TTGTA-TAA--A-AAAa
gi|44433 : GATAATCAGTACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-AAGTG-CATTTTTAAAAA-CATTTTAAACATTCATATGATATATGCAGTTTGGATCGCGATAT-AGA-T-TACG-GA-ACGTGTAGGAGATA---GAA--GTGTG-TAA--A-AAA
gi|44434 : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CAATTTTAAAAA-CAGTTTTAACATTCAAATGATATAAGGAGTTTGGATCGTGATGT-AGA-T-TACG-GA-ACGTGTAGGATATA---AAA--CTGTG-TAA--A-AAa
gi|44435 : GATAATCCGCACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-TTTTTTTAAAAAACAGTTTTAACATTCAAATGATATAAGTAGTTTTGATCGCGATGT-AGA-T-TACT-GA-ACGTGTAGGAGATA---GAA--CTGTG-TAA--A-
gi|44436 : A--TAT-TCGGA-CGCTTTTAAGTA-TA-----AACTTTGGAGTGATAGAAACAGTTTGGATCGCGATGT-AGG-T-TAC---ATACGTATAGGAGTTA---AAA--CTTTG-TGA--A-AA
gi|44437 : gGATAATCCGGACACGG-TAGT---AT---TATCTT-AAATAC-CA--TAT-AAGTG-CATTTTTTAAAA-CAGTTTTTACATTCATAGGATATAAGCAGTTTGGATCGCGATAT-AGA-T-TACG-GA-ACATGTAGGAGATA---GAA--CTGTG-TAA--A-AA
gi|44438 : GATAATCCGGATGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CATTTTTAAAAA-CAGTTTTAACATTCAATCGATATAAGCAGTTCGGATCGCGACGT-AGA-T-TACG-GA-AAGTATAGGAGATA---GAA--CTGTT-TAA--A-AAA
gi|44439 : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-CA--TAT-TAGTG-CA-TTTTAAAAA-CAGT--TAACATTCATATGATGTAAGCAGTTTGAATCGCGATAT-ATATT-TATG-GA-ACGTGTAGGAGATA---TAA--CTGTG-TAA--A-AAAa
gi|44440 : GATAATCCGGACGCGG-TAGT---AG---TATATT-AAATAC-CA--TAT-TAGTA-CATTTT-AAAAA-CAGTT--AACAT-CATATGATGTAAGCAGTTTGAATCGCGACAT-AGA-T-TACG-GA-ACGTGTAGGAGATA---TAA--ATGTG-TAA--A-AA
gi|44441 : GATAATCCGGACGCGG-TGGT---AG---TATCTT-AAATAC-AA--TAT-TAGTG-TATTTT-AAAAA-CAGTTATAGCATTCATATGATGTAAGCAGTTTGGATCGCGATAT-AGA-TAAACG-GA-ACGTGTAGGAGAAA---GAA--CT-TG-TGA--
gi|44442 : GATAATCCGGACGCGG-TAGT---AGAAGTATCTTAAAAAAA-AA--TGT-TAGTG-TA-CTTTGATAA-CAGTTATAACATTCATATAATGTAAGCAGTTTGTATCGCGATAT-AGA-T-T-----A-ACGTGCAGGAGAAA---AAAACTTGTGATGA--A-AAA
gi|44443 : GATAATCTGGACGCGG-TAGT---AG---TATCTT-AAGTAC-CA--TAT-AAGTG-CATTTTTAAAAA-CAGTTTTAACATTCAAATGATATAAGCAGTTTGGATCGCGATGT-AAA-T-GATA-GA-AC-TGTTGGAAA
gi|44444 : GATAATCCGGACGCGG-TAGT---AG---TATCTT-AAATAC-AA--TAT-TAGTG-TA-TTTTAATAA-CAGTTATAACATTCATATAATGTTAGCAGTTTGTTTCGCGATAT-AGA-TATACG-GA-ACGTGTAGGAAAAA---GAA--CT-TG-TGATTA-AAA
gi|44446 : GATAATCCGAACGCGG-TAGTGAAAG---TATCA--AAATAC-AAA-TAT-TCGTG-TGTTTT-AATAA-CAGTTGTAACATTCATATAATGTAAGCAGTTTGTATCGCGATAT-AAA-TATACG-GA-ACGTGTAGGAGAAC---GAA--CT-TG-TGA--ATAAAa
gi|44447 : GATAATCCGGATGCGG-TAGTA--AG---TATCTT-AAATAC-AA--TAT-TAGTG-TA-TTTTAATAA-CGGTTATAACATTTATATGATGTAAGCAGTTTGGATCGCGATAT-AAA-TAAACG-GA-ACGTGTATGAGAAA---GAA--TTa
gi|44448 : GATAATCCGGACGCGG-TAGT---AGAG-TATCTT-AAATAC-AAT-TAT-TAGTG-TA-TTTCAATAA-CACTTATAACAGTTATATAATGTAAGCAGTTTGTATTGCGATAT-AAA-TATACG-GA-ACGTGTAGGAGAAA---GAA--CT-TG-TGA--aaaaaa
gi|44449 : GATAATCCGGACGCGG-TAGT---AGAAGTATCTT-AAAAAA-CAAATGT-TAGTG-TACTTT-GATAA-CAGTTACAACATTCATATAATGTAAGCAGTTTGTATCGCGATAT-TAA-TATATT-TA-ACGTGCAGGAGAAA---AAAACTTGTGATGA--A-AAA
gi|44450 : GATAATCCGGACGCGG-TAGT---AGAAGTATCTT-AAAAAA-CAAATGT-TAGTG-TACTTT-GATAA-CAGTTACAACATTCATATAATGTAAGCAGTTTGTATCGCGATAT-TAA-TATATT-TA-ACGTGCAGGAGAAA---AAAACTTGTGATGA--A-AAAa
gi|44451 : GATAATCCGGACGCGG-TAGT---AGAG-TATCTC-AAATAC-AAA-TAT-TAGTG-TATTTT-AATTA-CAGCTATAACATTCATATAATGTAAGCAGTTTTTATCGCAATAT-AAA-TATACG-GA-ACGTGTAGGAGAA-----AA--CT-TG-TGATTA-AAAa
gi|44452 : GATACCCCGGACGCGG-TAGT---AGAATTATCTT-AAATACAAA--TAT-AAGTG-TA-TTTTAATAA-CAGTTATAACATTCATATAATGTAAGCAGTTTGAATCGCGATATAAAA-A-TACG-GA-ACGTGTACGAGAAA---GAG--CT-TG-TGa
gi|44453 : ATCCGGACGCAG-AA-----AG---TAT----------------AT--AGTG-CATTTTTATAAA-CA---------TTCGAATGATACAAGCAGTTTGGATCGCGACGT-AGG-T-TACG-T--ACGTGTAGGAGACA---GAA--CTGTG-TGA--A-GAAt
gi|44454 : tATCCGGACGCTG-TAGT---AG---TATCTT-AAATAC-AA--TAT-TAGTGTCATATT--ATAA-GAGTTTTAACATTCGTATGATGTAAGCAGTTTGGATCGCGATAT-AGA-TATACG-GA-ACGTGTAGGAGAAA---GAA--CTGTG-TAA--A-a
gi|44455 : tATCCGGACGCGG-TAGT---GG---TATCT--------------AT-T---G-CATTTTTAAAA--TAGTTTTTACATTCAAATGATATAAGCAGTTTGGATCGCGATGT-ATA-T-TACG-TA-ACGTGTAAGAGATA---GAA--CTCTG-TGG--A-AAA
gi|44456 : ATCCGGACGCGG-TAGT---AG---TATCTT-AAATACAAA--TAT-TAGTG-TA-TTTCAATAA-CAGTTATAACATTCATATGGTGTAAGCAGTTTGGATCGCGATAT-AAA-TATACG-GA-ACGTGTAGGAGAAA---GAA--CT-TG-CGATTA-AAAa
gi|44457 : ATCCGGACGCGG-TAGT---AG---TATATT-AAATAC-AA--TAT-TAGTT---TTTTTTATAA-CAGTTTTAACATTCATATT-CATAAGCAGTTTGGGTCGCGATAT-AGA-TATACG-GA-ACGTGTAAGAGAAA---GAA--CTGTG-TTA--A-AAAa
gi|44458 : A--TAT-TAGTG-TATTTT-AAAAA-CAGTTATAACATTCATATAATATAAGCAGTTTGTATCGCGATAT-AAA-TATACG-GA-ACGTGTAGGAGAAA---GAA--CT-T--TAA--A-AAA
gi|44459 : aaA--TAT-TAGTG-TATCTTTATAA--CAGGCTTAACATTCATATGATGTAAGCAGTTTGGATAGCGAAAT-AGA-TATACG-GA-ACGTGTACGAGAAA---GAA--CTGTG-TAA--A-AAA
gi|44460 : aA--TAT-TAGTG-TATTTT-AATGA-CAGTTATAACATTCATATAATGTAAGCAGTTTGTATCACAACAT-AAA-TATACG-GA-ATGTGTAGGAGAAAGCTGAA--CT-TG-TGATTA-AAA
gi|44461 : a-TAGTG-TATTTT-AATAA-CAGTTATATCATTCATATAATGTAAGCAGTTTGTATCGCGATAT-AAA-TATATG-TA--CGTGTAGGAGAAA----AG--CT-TG-TGATTA-AAAa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|44445 ): GATATCCGGACACGGAAAGTATCCAGTGCATTTTTATAAACATT